LOCUS       DAPIWU010000001        57496 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.001, whole genome shotgun sequence.
ACCESSION   DAPIWU010000001 DAPIWU010000000
VERSION     DAPIWU010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 57496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 57496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..57496
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.001"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..213)
                     /locus_tag="RJ285_000001"
     CDS             complement(<1..213)
                     /locus_tag="RJ285_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7382837.1"
                     /translation="MGFRINTNVAALNAKANSDLNSRALDQSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDA"
     gene            complement(308..2158)
                     /locus_tag="RJ285_000002"
     CDS             complement(308..2158)
                     /locus_tag="RJ285_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7382838.1"
                     /translation="MTILEKNIQALLSGVNEPLGNKLLKFIQNKTCFRFSIDENLNIY
                     DKTHNVFMYENLEEELNFFYQGILEKTPRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELCSGKIYLVDVCEPKMELQLSILFDQKDMFEWLNLYEMFI
                     SCNFYKMYYQDVILKTDQTCMDNIFVVIRNFDPNDQLTTICYKQFLQNIPHLLQNIPF
                     QRLLSERKAKFDTAVVVSAGPSLHKQLALLRQYQENVVIFCADGALNMLENEGIVADY
                     VLNLDIEDLAVKFFNCSKSLDYSKTIAVLAVNTHPNVIDCLINKFLYCIALRDEYLYK
                     QFHLDDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDKDGNSHSKGFAFGENS
                     NAEKNFQLLQVPSYYKDGNKVTTHVSWNDYRIKLEYLIARNSEINFYNATEGGAYINF
                     AKNTSFKECCEKFFTQKKPCFDIPKTFTYNRSLKFLSKVFLHLKNDLQNAQDILRDAH
                     LLNNVLIGVVNIKNPLPLDFLQNIYKSIGDFNSVLDDDKFIQDGILKGVLYYRGSFLS
                     EAIKKDLKDEAYYLLNFISAYQKWLEKFIERLEIKNAIIKDTVLKYGNLI"
     gene            complement(2168..3417)
                     /locus_tag="RJ285_000003"
                     /pseudo
     CDS             complement(2168..3417)
                     /locus_tag="RJ285_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            complement(3417..3932)
                     /locus_tag="RJ285_000004"
     CDS             complement(3417..3932)
                     /locus_tag="RJ285_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDV7382839.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGNFNGTKEVNFRVGDDKECLKLLF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(3933..4940)
                     /gene="tsaD"
                     /locus_tag="RJ285_000005"
     CDS             complement(3933..4940)
                     /gene="tsaD"
                     /locus_tag="RJ285_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDV7382840.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNTNLKLAPLKFCSDNALMIARAAVDAYEKKEFVSIEEDILSPKNKNFSR
                     I"
     gene            complement(4937..6331)
                     /locus_tag="RJ285_000006"
     CDS             complement(4937..6331)
                     /locus_tag="RJ285_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HDV7382841.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINRELEVKLFNDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            complement(6333..7403)
                     /locus_tag="RJ285_000007"
     CDS             complement(6333..7403)
                     /locus_tag="RJ285_000007"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDV7382842.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAIDFSKIPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            complement(7400..8125)
                     /locus_tag="RJ285_000008"
     CDS             complement(7400..8125)
                     /locus_tag="RJ285_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDV7382843.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVAFL"
     gene            complement(8134..8472)
                     /locus_tag="RJ285_000009"
     CDS             complement(8134..8472)
                     /locus_tag="RJ285_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382844.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            complement(8474..9781)
                     /locus_tag="RJ285_000010"
     CDS             complement(8474..9781)
                     /locus_tag="RJ285_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HDV7382845.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            9844..10419
                     /locus_tag="RJ285_000011"
     CDS             9844..10419
                     /locus_tag="RJ285_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDV7382846.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVNKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     KNELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSELR"
     gene            10416..11405
                     /locus_tag="RJ285_000012"
     CDS             10416..11405
                     /locus_tag="RJ285_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HDV7382847.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALKYEKQGDYKKAMEIYKKLALK
                     NSSVLISREQNNSSEATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDFPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            11491..12459
                     /locus_tag="RJ285_000013"
     CDS             11491..12459
                     /locus_tag="RJ285_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7382848.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVGIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKAYA"
     gene            12452..13390
                     /locus_tag="RJ285_000014"
     CDS             12452..13390
                     /locus_tag="RJ285_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDV7382849.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISMVINFLGGIYFIYLVLKGNKL"
     gene            13387..14142
                     /locus_tag="RJ285_000015"
     CDS             13387..14142
                     /locus_tag="RJ285_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7382850.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            14155..15147
                     /gene="ceuB"
                     /locus_tag="RJ285_000016"
     CDS             14155..15147
                     /gene="ceuB"
                     /locus_tag="RJ285_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HDV7382851.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(15220..15309)
                     /locus_tag="RJ285_000017"
     tRNA            complement(15220..15309)
                     /locus_tag="RJ285_000017"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15273..15275),aa:Ser,seq:gct)
     gene            complement(15373..15927)
                     /locus_tag="RJ285_000018"
     CDS             complement(15373..15927)
                     /locus_tag="RJ285_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382852.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQK
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            complement(16063..17895)
                     /locus_tag="RJ285_000019"
     CDS             complement(16063..17895)
                     /locus_tag="RJ285_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HDV7382853.1"
                     /translation="MKKNILRLGIVVLVLLIVGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            complement(17910..18425)
                     /gene="nrfH"
                     /locus_tag="RJ285_000020"
     CDS             complement(17910..18425)
                     /gene="nrfH"
                     /locus_tag="RJ285_000020"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HDV7382854.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            18613..20697
                     /locus_tag="RJ285_000021"
     CDS             18613..20697
                     /locus_tag="RJ285_000021"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HDV7382855.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYKLKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            complement(20840..21790)
                     /locus_tag="RJ285_000022"
                     /pseudo
     CDS             complement(20840..21790)
                     /locus_tag="RJ285_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799189.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(22642..23099)
                     /locus_tag="RJ285_000023"
                     /pseudo
     CDS             complement(22642..23099)
                     /locus_tag="RJ285_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002898691.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
     gene            complement(23305..23663)
                     /gene="ssrA"
                     /locus_tag="RJ285_000024"
     tmRNA           complement(23305..23663)
                     /gene="ssrA"
                     /locus_tag="RJ285_000024"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(23664..24074)
                     /locus_tag="RJ285_000025"
     CDS             complement(23664..24074)
                     /locus_tag="RJ285_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HDV7382856.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            24165..25172
                     /gene="ruvB"
                     /locus_tag="RJ285_000026"
     CDS             24165..25172
                     /gene="ruvB"
                     /locus_tag="RJ285_000026"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDV7382857.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKSYSALKLNYEKTLFE
                     E"
     gene            25176..26219
                     /locus_tag="RJ285_000027"
     CDS             25176..26219
                     /locus_tag="RJ285_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDV7382858.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITM
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(26249..27640)
                     /gene="fumC"
                     /locus_tag="RJ285_000028"
     CDS             complement(26249..27640)
                     /gene="fumC"
                     /locus_tag="RJ285_000028"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDV7382859.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFISSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRVKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGSKA"
     gene            complement(27696..30821)
                     /locus_tag="RJ285_000029"
     CDS             complement(27696..30821)
                     /locus_tag="RJ285_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDV7382860.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPIAFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYE
                     LHLMSSVGKRF"
     gene            complement(30824..32620)
                     /gene="glmS"
                     /locus_tag="RJ285_000030"
     CDS             complement(30824..32620)
                     /gene="glmS"
                     /locus_tag="RJ285_000030"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDV7382861.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFELYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGNEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            complement(32625..34973)
                     /locus_tag="RJ285_000031"
     CDS             complement(32625..34973)
                     /locus_tag="RJ285_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HDV7382862.1"
                     /translation="MIFEIQLIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKTKFES
                     ILKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDK
                     HVIFDLNLVFALRRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPF
                     WTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIES
                     ENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSK
                     LENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKE
                     LTLKRSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWFNNETN
                     LSLQIVAPLHFNIAIILSSLTNLNLIFMNFFELFDNKIYLRFEYDNIISDEQKLKLCE
                     LLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNEL
                     ELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            35046..36854
                     /locus_tag="RJ285_000032"
     CDS             35046..36854
                     /locus_tag="RJ285_000032"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDV7382863.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            36851..37369
                     /locus_tag="RJ285_000033"
     CDS             36851..37369
                     /locus_tag="RJ285_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDV7382864.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            37408..38499
                     /locus_tag="RJ285_000034"
     CDS             37408..38499
                     /locus_tag="RJ285_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDV7382865.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANILAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            38541..41999
                     /locus_tag="RJ285_000035"
                     /pseudo
     CDS             38541..41999
                     /locus_tag="RJ285_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            42080..43108
                     /locus_tag="RJ285_000036"
     CDS             42080..43108
                     /locus_tag="RJ285_000036"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDV7382866.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKKKIILQFTPHLVSMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            43118..43564
                     /locus_tag="RJ285_000037"
     CDS             43118..43564
                     /locus_tag="RJ285_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7382867.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVVDEEIVGSILCGHDGRIGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            43568..44413
                     /gene="argB"
                     /locus_tag="RJ285_000038"
     CDS             43568..44413
                     /gene="argB"
                     /locus_tag="RJ285_000038"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDV7382868.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKVTIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDVACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            44417..45604
                     /locus_tag="RJ285_000039"
     CDS             44417..45604
                     /locus_tag="RJ285_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDV7382869.1"
                     /translation="MKMDYKEQSHIVPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKSGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNTVFEIFKEEKILENVNKLTPYLEQSLDELIKEFDFCKKRKGLGF
                     MQGLSLDKSVKVFKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(45623..46252)
                     /locus_tag="RJ285_000040"
     CDS             complement(45623..46252)
                     /locus_tag="RJ285_000040"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HDV7382870.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            46341..46889
                     /locus_tag="RJ285_000041"
     CDS             46341..46889
                     /locus_tag="RJ285_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HDV7382871.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESGIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEI
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(46858..48231)
                     /locus_tag="RJ285_000042"
     CDS             complement(46858..48231)
                     /locus_tag="RJ285_000042"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDV7382872.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(48218..49240)
                     /locus_tag="RJ285_000043"
     CDS             complement(48218..49240)
                     /locus_tag="RJ285_000043"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDV7382873.1"
                     /translation="MQRKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(49254..49664)
                     /locus_tag="RJ285_000044"
     CDS             complement(49254..49664)
                     /locus_tag="RJ285_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDV7382874.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKESFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKA"
     gene            complement(49665..50273)
                     /gene="pyrE"
                     /locus_tag="RJ285_000045"
     CDS             complement(49665..50273)
                     /gene="pyrE"
                     /locus_tag="RJ285_000045"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDV7382875.1"
                     /translation="MNLGQIYKDCGAYLEDHFLLSSGKHSQFYLQSAKVLENPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(50276..50839)
                     /gene="frr"
                     /locus_tag="RJ285_000046"
     CDS             complement(50276..50839)
                     /gene="frr"
                     /locus_tag="RJ285_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDV7382876.1"
                     /translation="MIMLSEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDAYTIKIDESVKSKESELLKV"
     gene            complement(50849..51220)
                     /gene="secG"
                     /locus_tag="RJ285_000047"
     CDS             complement(50849..51220)
                     /gene="secG"
                     /locus_tag="RJ285_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDV7382877.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAAQLPSDVNSSK"
     gene            complement(51324..52019)
                     /locus_tag="RJ285_000048"
     CDS             complement(51324..52019)
                     /locus_tag="RJ285_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HDV7382878.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVIGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            52180..52815
                     /locus_tag="RJ285_000049"
     CDS             52180..52815
                     /locus_tag="RJ285_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HDV7382879.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            52812..54695
                     /locus_tag="RJ285_000050"
     CDS             52812..54695
                     /locus_tag="RJ285_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDV7382880.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(54718..55689)
                     /locus_tag="RJ285_000051"
     CDS             complement(54718..55689)
                     /locus_tag="RJ285_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HDV7382881.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(55699..56880)
                     /locus_tag="RJ285_000052"
     CDS             complement(55699..56880)
                     /locus_tag="RJ285_000052"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HDV7382882.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYTGLGANDLDDIVVTSCATESINWVLKGVYFDHILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            complement(57058..57459)
                     /locus_tag="RJ285_000053"
     CDS             complement(57058..57459)
                     /locus_tag="RJ285_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7382883.1"
                     /translation="MTYNEKIISMNNDLLDHQHKELFEISKKLSLMNQRHVGTKELKI
                     VLRELLIMINRHFSDEEAFMREIGYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
BASE COUNT        19696 a         9069 c         8622 g        20109 t
ORIGIN      
        1 agcatcatta ccattagata tagcctgacc caaagtattt gcctgagatc ttaaactatc
       61 tgctatcgcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactgag
      121 tcttgaaagt gattgatcta atgctctgct gtttagatcc gaatttgctt tagcatttaa
      181 tgctgcaaca tttgtgttaa tacgaaatcc cattttaaat ccttttaaat aaattcaagt
      241 ccatccatga acttgttata aactatatcg tttaaaagga aaaatagttt agagttttta
      301 taaaatttta tatcaaattt ccatatttta acactgtatc ttttatgatg gcatttttta
      361 tttctagcct ctcaataaac ttttcaagcc atttttgata agcgctaata aaatttaaaa
      421 gataatacgc ctcatctttc aaatcttttt ttatagcttc agataaaaaa ctcccacgat
      481 aatacaatac cccttttaaa ataccatcct gtataaactt atcatcatct aaaacagaat
      541 taaaatcacc gatacttttg taaatatttt gcaaaaaatc taaaggcaga ggatttttta
      601 tatttactac gccaattaag acattattta gcaaatgagc atctcgcaaa atatcttgag
      661 cgttttgaag gtcatttttt aaatgcaaaa aaactttaga taaaaattta agtgaacgat
      721 tataagtaaa agtttttgga atatcaaagc aaggtttttt ctgagtaaaa aatttttcac
      781 aacattcctt gaaacttgta ttctttgcaa aattaatata agcacccccc tctgtagcat
      841 tgtaaaaatt tatctcgcta tttcttgcaa taagatattc cagctttatg cgataatcat
      901 tccagctaac atgagtggta actttattac catccttata ataagatggg acttgaagaa
      961 gttgaaaatt tttttcagca tttgaatttt caccaaatgc aaaaccttta gagtgagaat
     1021 ttccatcttt atcaaaagct aaatcttgtc ctatcataat gatattttta aatcctaaag
     1081 ccaaagctaa agtataagaa aaatggctta catgggtacc tgtatctata taaccaaaat
     1141 catccaaatg aaactgctta tataaatact catctcttag cgcgatacaa taaagaaatt
     1201 tatttattaa acaatctatc acattagggt gcgtattgac cgctaaaacc gctatggttt
     1261 tagaataatc taaggatttt gaacaattaa aaaatttcac tgccaaatct tctatatcca
     1321 aattcaatac atagtctgca acaataccct cattttcaag catatttaaa gcaccatctg
     1381 cacaaaaaat aactacattt tcttgatatt gtcttaacaa agcaagttgt ttatgaagac
     1441 taggaccagc tgaaactaca acggctgtat caaatttggc cttacgctcg cttaaaagtc
     1501 tttgaaaagg tatattttgt aataaatggg gtatattttg caaaaactgc ttatagcaaa
     1561 tagttgttaa ttgatcattg ggatcaaaat ttctaataac cacaaaaata ttatccatac
     1621 atgtttgatc agttttcaat ataacatctt gataatacat tttataaaaa ttacaactta
     1681 taaacatttc ataaagattt aaccattcga acatatcttt ttgatcaaat aatatactaa
     1741 gctgaagctc catttttggc tcacaaacat ccacaagata aatttttcca ctacaaagct
     1801 cttcactcaa atctatcgtg cttaaagcta ggataaaaag ttctatttca ctttcaaata
     1861 caaaaagatg tttatagtgt ttagctaaat ttttaatcag taaagcattg cctataccat
     1921 aaatacatat aaaaggatat ctaggagttt tttctaaaat accttgatag aaaaaattta
     1981 attcttcttc taagttttca tacatgaaaa cattatgagt tttatcatag atattcaaat
     2041 tttcatctat actaaaacga aaacaagttt tattttgtat gaattttaaa agtttatttc
     2101 ctaagggttc atttacccca cttaataaag cttgtatgtt tttttctagt atggtcatta
     2161 gatttcctta aattttatct atttttagtg atattttgtc atctttttcg ctaaatttat
     2221 acaacaaatc ctcacaagga taagagatgt atttttcttt acaatctttt tttggatttt
     2281 gttttatttt ttctagcatt aaaggaagtt ctttggaaat taaagttttt atagacattc
     2341 ccatgccatg ttctaaactt ttgataaatc taccatcaac ttgatctgga ttttttatca
     2401 tataaagctc tgcatcaaac ccaaattgtt ctaaatattt gtaaagttct aatttttcat
     2461 caggtggagc tatttcttta tcataaaaag aatgataact tgtatagcat ggttttggat
     2521 aatttgtttg aatttcaaga tgctttggtt ctaagatata tcttatcatt ctccttggta
     2581 ttgaaaaaaa attatttgaa cttgaattac ttgtccaaaa agtttttgtc gagcaatgtg
     2641 ttttaatatg atgaaaaaaa tcaaaagtag aaaattcgct atattgcaca aaatccattt
     2701 cctttccaaa acctataaga cgccaaagaa atttagcata acttgagtta tctataactc
     2761 catctattag ccaaggtgca atcttagccg ccaaatgcgc taaatatccc ccgtgagaac
     2821 tacctatcat gataactggt ataccccccc catagtatca aaaggagcat gttttttaag
     2881 ataaagtgca acatttaaaa gatcttgagc ttgcatgatt ccaaaatttt gatattcgtt
     2941 ttttgcaggt tgcaaactca catgtaaatt tagaaaataa tttggtgtaa aattaccttt
     3001 ttgcttacct tcaactattt gattatttac aaaatgaaaa atttcactca tttgtttata
     3061 atcttgaatt ttatcaacat cataaggaag cttgatatcc gcagcttcac aacttacttt
     3121 taaaataagc ttgtctatgt catctaaata aaaagttgat ccagtttgag gacgattacc
     3181 tatacaatga taattcacac ttgctacagc cacattaaat tcgcctgcta caaattcagc
     3241 taagtgttca cggtaatttt catccacatc tccaccaagc ccagggatga taaacactaa
     3301 agcttttatt tctttttcat catcaaaaca aagcttaaat tcaagctttg attctctttt
     3361 tatatcaagt tctacatcat cacaagagtc aatctcataa gttttactca ctatcattac
     3421 attcccccta ttaaaagata agttttactc gctaggtttt taaaattttc attcttactt
     3481 aagatcacac aagctttatt actagaagag cttgtaaagt ctatattttc taaatcttca
     3541 tggctttgat tggctgcgtt aatgatagca tttttacttg cttcattgct tgaaattccc
     3601 atgagtataa aatcagcttt atttataaaa agaagtttta agcattcttt atcatcgcct
     3661 acgcgaaaat ttacttcttt tgtgccatta aaattgccaa gatcgacatt ttcaacccca
     3721 cttacattac tcatcgtttt tatagagctt aaatgatcct tttttaaagt ataaatgctt
     3781 atatcgttga tcaaagtttt aaggttattt aaagacttac taacttcagc ttcatcctta
     3841 cttgaactca tttttggtaa agcaatagcg gctaaaattc ctaaaataac aatcacaaaa
     3901 acaagttcta atatggtaaa agcttttttc atttatatcc ttgaaaaatt tttattttta
     3961 gggcttaaaa tatcttcttc tatgcttaca aattcctttt tttcataagc atcaaccgca
     4021 gctcttgcta tcatcaaagc attatcagag cagaatttta aaggagctag ttttaaattt
     4081 gtattatatt tttgacataa attttgcaaa cgcgaacgca agttaagatt tgcactagct
     4141 ccacctacaa cgccaaaatt tttaaattta taaagattaa aaattttttc taatttatcc
     4201 atgatatgat cacaagctgt attttcaaag gcataagcta tttctgcttt tatatcatcg
     4261 cttaaatttt catgctttaa aatttccaaa cgcactgcat ttttaagccc tgaaaaacta
     4321 taagcgagtt ctttagaatg ctttaaaggt atattaaaag agatattttt aagtttggcg
     4381 ttttttgcta aattttctat gatgacccca ccaggataac ctaaattcat cattttagcc
     4441 actttatcaa aactttctcc aaagctatca tcatttgtac ttgctaaaag ctctaagctt
     4501 gcatcatctt taagataaag caccatagtg tgcccaccac taacaagtaa aattcccata
     4561 tctaaagaaa ttttttcttc taaaaaaaga ctataaatat gacctttaag atgatttata
     4621 gggattaagg gtaaatttag agcacttgct aaggtttttg ccatagaaat tccactgagc
     4681 aaagaaacgc taagcccagg ttcatttgtc acagctatgg cacaaagatt tttaaaatgc
     4741 tctttgcatt gcttaagtat ctttggcaaa gcctcgctat gaagtcttgc agcaagttca
     4801 ggtaccactc ccccatagat actatgatct aattcttggg aaattttttt atgaaattta
     4861 cattctaagg tatttttatc aatgatagct atagaactat catcacaaga actttctata
     4921 gctaggataa gatttttcat tcaaattcca ctaaaataga acctaagaat ttatcttttg
     4981 atcttgccat tttaagagta tttaaatcca aatttttagc gtttttgatc aacttgctat
     5041 tgatatttgc ctctaaaagt tgttgcaaat ttgcacctct taactcataa aattccactc
     5101 tataaatttt acctgccatg tctaaagaat attgtgtttg catatttttt ttatgaacta
     5161 aaataccact ttcatctttt gagtgatcaa agcctatgat atttacgcgc acattagcta
     5221 tctttggaat aagaaaattc tcttttactt tcaccttggt tccaaaagga acggtggttt
     5281 cattgccatc aacttgaaaa gttacctcat taaaagcatc gctaaattct aaatactcag
     5341 gatataatct tgtttgaaaa cgattgccat actggatata aaaagaattt ccttctgcga
     5401 taacagcagt aagttcatta cttgtgttat aatttaactc tttatttacc ggaaaaggca
     5461 catagttgat aacctttctt ggatttttta aagaaagtaa aattctatca ttaaaaagct
     5521 tcacttcaag ctctcggttt atggctttat caaccccttg tggagtgagt tcgaaatctc
     5581 tgctaaattc aattcctgca gtttttaaat aattttcaat tgccaaaaga tgataataag
     5641 ctcttaaatt tacaggcaga tttttacttg cttcatttgc aaaagcggct ttgtgatttg
     5701 aaatcacaaa ataagttaaa gctttaagca tttccgtatc gccaagctct tgggttttgg
     5761 tgtttttaag atgataagca tgctttggat cagcaagtga agaattgaca ctatttacgg
     5821 tttgagtggc gatattttca agatcagggt atttgcttgc attgatttcg cttgtatcaa
     5881 tcacacttga atttccccaa cgcttaggat tttgcatcgc atcgatataa gtaggtttat
     5941 aaaaacccca accatcgtga agattgatca ccatactaac ttcaggaagt aaaataagct
     6001 ctttaatgcg ttgaacggtt ttataatcag gatcttttgg gctaatgctt gcaaatttac
     6061 ggtttaaatc cccattattc ccacgagaac gcttgataat gctatcaaaa gctaaatttg
     6121 gagccactat aatcttaccc ttagtgatat tataatcact caaaagcaaa cttgccgcat
     6181 gaaatccacc aggctcatcg ccttgaattc caccaaaaat taaaactgta ttattatcat
     6241 ctagactttt tccattttct cctacgctaa agtctagctc taaagcaaaa atgcttgtta
     6301 taaaaaataa aattgttaaa aaaaatttca ttttaactcc ttaaatactc tcttgtttta
     6361 aaatcatact caaaaacttc ttctatgctt gaaattttag gtactccaaa atgatcaagg
     6421 gctttaaaaa tgcatttagc aatgtctaaa aatccacttt tattttctaa aaaattataa
     6481 acaccaactt cattagcagc attgatgata acacctaaat ttggctcttt taaaaatgta
     6541 tttttaagct taaaaatagg gtattttttt gtgctgattg gatgaaattt taaagcaggt
     6601 attttactaa aatcaatagc ctctaaaata ggcgtatctt gtttttcaaa tatagcatct
     6661 gaaatagcta gtttcatatc tgcttttgaa aaatacgccg tgctagctcc atttttaaat
     6721 tcacacattg catgcactaa agatcttggt tctattaaag catcaatttc tttaaaatca
     6781 tataaatgat aagcctctat aatctcaaaa agcttatttg ccatagtcgc actatctata
     6841 gtgatctttg ctcccatgtt ccaattagga tgttttaaag catctttgac actgacttga
     6901 tttaaatctt tgattttata cttataaaaa gctccgccgc ttgctgtgat ataaagtttt
     6961 gctatatttt ttttaccttc gagtaaaaat tttaaagctg catgctcact atcaacgggt
     7021 aaaaatttag cccctttcaa aaaactccca gctactacaa gactttcttt gttagctaaa
     7081 gctatgtttt tgccaagctc tttagccttt aaagtgcttt taagtcctgc aaaacctaca
     7141 atggcattga gtaaaagctt atcttgacat tctgttaaaa tttgctctaa accttcttgc
     7201 cctataaaaa ctctatcgtg tttaactaaa tgcttatttt ttgaatcttt tatggcaaca
     7261 aatttgggtt taaaccttgc gatttgttca tttaaaagag cgatgttatc cccgcaagct
     7321 aaagcagaaa tacgaatgtt ttttaaagca gcaagtttaa gagcgtttac tcctatgctg
     7381 cccgtgcttc caaaaagtat cataaaaaag caaccatcac aaaagcagca atgatcactg
     7441 catcgatcct atcaagcaca cctccatgac cagggataag atctccacta tcttttacac
     7501 ctgcttctct tttaaaataa ctctcaagca aatctccaat cactgcaaaa atcgctacaa
     7561 aaaacgaaca aagtaaagaa agccaaaaac tataaacaaa aactcccaaa atagttccaa
     7621 taacactcgc acaaatcaaa ccacctataa caccttctaa ggttttattt ggacttgttg
     7681 gagaaaaagg agttttaccc ataagttttc cgataaaata cgccccacta tcgcaagctg
     7741 caacgataat gataagccaa aaaagcgcaa acataccctg atctaaatac acttgccaaa
     7801 gtgctaaaat aggcaaacta ggataaatat aaataagagc tggttttaag gaagcctttt
     7861 tataaaccaa atatccaacg actaataaca aagctaaaat cccaaaaagc aaagctttat
     7921 gcgataaact tcccaaaata aaagctatag ccaaagggat aatagaaata ttttctaaag
     7981 caaaaagttt ttttgcttca ctaaaagata aatacaataa aaccgcaaaa acgataaaat
     8041 tgataaaaaa ttgatcaatc aacgcgataa taataatagc ccctatcatc acaagagctg
     8101 aaataattct agttgtatta aacatatttt tccttatata ctaatatcta agcgatgaat
     8161 gctttgtgcg tctttaaaat ttggatcttt agactcatct tcttcatttt tctcatcatc
     8221 gctggtttta gcttcttgat tgtgtttttt ctttttttct tcttgttcgg ctttttcttt
     8281 gatctcttct ttgatttcat gagtctcatt gactttctca agcttgttta aagttttttc
     8341 tttttcatta aattcagcca tatttagcgt agctgcaaaa ccttcttttg caagctcatt
     8401 gcttgcttgt gtagctggat aagccatatt ctgatttata taattgatat ttcctaaagg
     8461 gctaactggc attttaatcc tttgtgatat taatactttt aaaatttgta taatttacaa
     8521 acgccttttg ctgaacctta acaaaatttt ttaaggtata atcgacccaa tacgaacctt
     8581 tctttaactt agaaaagctt acacaaagcc ttgcagcaaa ttctatcaca tcgaggctga
     8641 ttttttgctt gtttgataca atcaaagtat gtgcgctagg aatatccctt acatgaagcc
     8701 acaaatcatc ttttttagca tttttaagta aaaattcatt gcctttttca tttttaccca
     8761 cgcaaatttt aaactcgtta aaataaaaat ttgccacaag atcttcttgt ttatgatctt
     8821 gatttttttt gctatttttt ttaggtagta aaatttcaag ctctatctca ctcttagctt
     8881 gaagcaataa ttctttcaaa ctcaaggtaa aatctaactt ttcttttaaa ttttgtcttt
     8941 gtatgtttaa atttttagct ttttgttcta attttttagc atttttataa tataaattag
     9001 cgctttgctt aggattaaat tcaagcttaa attcaagctc tttgccttca aaatcatcaa
     9061 gcttaaattc cctttcataa tcttttaaaa cactcaaatt tgcaaacaat acatcagccc
     9121 tttttctgta ttctaaagct tttaagagta aagaattttc ttcatctaaa ctagaaaaaa
     9181 gttcttgtaa attttgtatt tttttatcca cttgtgcaag ttttaaattt tttatttgtt
     9241 tgattttact ctcataaatg cttgtaaatt tgcgagaaaa ataatctgca aagtctttaa
     9301 tttcctcaaa attttcatcc attttataag gctttaaaga ctctaaaatc acattaggtt
     9361 ttacaacacg ataactttta tcaatgtgcc ttaaagcctc tatgatcaaa tctttttcat
     9421 ctgtaagaat aacattggta tttttacccg taaattcaaa ataaattttg ctctcatagc
     9481 ttttataagc cttattagct tttacactaa aacataaaat acgattgcct tcaaggactt
     9541 taacttcctt tataaaagca ttgctaaaat actttttaag cataaaatca aaaggtgcat
     9601 tataattttt tgcattaaat ttagctgtat aaatcgcact cattgcacga gtaagatcaa
     9661 aaataaatct ttctctatca aagcttaatt ccaaaatatt gtcattgata cgcttgataa
     9721 aatcgatttt tttaaactga gaaaaaaaag tttgtaattg taaaagttct gtgtatttca
     9781 taaaagaaat tataaaatat tttggcgaat tttgtggtag aattacatta aaaaaggaaa
     9841 tttgtgcagc ttaatgagct aaattgcgtg attttatgtg gtggtaaatc tagtcgtatg
     9901 ggacaagata aaagcaaatt gattcttaaa aatcaaaatt taactcaatt tcaagtaaat
     9961 aaattttcta aaatttttaa aaatgtctat gtgagtgcga aagaagacaa atttgaaaac
    10021 cattttagct tgataaaaga ttctttagaa tttgaagttt actctcctat gcttgcgctt
    10081 tactctatac tttcaaattt taaaaatgaa tttgtttttg ttttaagtgt agatagtcct
    10141 aaagtaggta aaaatgagct tttaaaaatg cttccttttt tagagcaaaa ctataaaata
    10201 atcatagcca aaaccccttt acataaacat cccttatgtg gcttttatca cagctcttta
    10261 gctcaaactt gtaaaaattt cttagaaaaa aatgaacaaa aaataggact tttattttct
    10321 gagattaaaa ccaaatttgt agaatttgaa gatgaagatg cttttttaaa tcttaatttt
    10381 tatgaagaat atgaaaaatt taaaagcgag ttaagatgag aaaaattgct ttatttttaa
    10441 gcttatgcgt ttttatatgg gctagtgatt tacaacaagc tttaaagtat gaaaaacaag
    10501 gcgattataa aaaagctatg gaaatttaca aaaaactcgc tttaaaaaat tcatctgttt
    10561 tgatttctcg agaacaaaat aactcaagcg aagcaacaca aatgcaaaat tctatcacta
    10621 taaaaaaaga agaaaaacaa gacttttctc gcttagcttt ggctaattat cttggtgaaa
    10681 atgaaagctt taatcccctt ggcattagct cttataagat gaattatttt ttaccttttg
    10741 cttatagttt taattcttta ggagtaaata ataataagag tgaggcgaaa ttccaactta
    10801 gtgttaaaaa aagacttttt gaaaatttac taggactaga tgaaaaatat tatatagcct
    10861 atactcaaac ttcttggtgg caaatttatg agcattcttc tccttttaga gaaaccaact
    10921 atcaaccaga attttttata gattttcctt tgtatcttaa agattatgaa ttttttaaca
    10981 atctacgcgt aggtatattg catgaaagca atggcaaggg agatgagaat ttacaatctc
    11041 gctcatggaa tagaatttat gtatctactg ctattttata taataaattt ttatttgttc
    11101 cacgcctttg gtatagaatt cctgaaaaca aaaaagatga tgataatcct gctatcttgc
    11161 attatatggg aaattttgat gtgaatttag cgtatttggg cgatgattat tttatcaatc
    11221 ttatgctaag aaacaatctt aaattccaca ataacaaagg tgctatacaa gttgatctag
    11281 gatatgatat ttttaataac ggaatttatt ggtatttaca atactttaat ggctatggag
    11341 aaagccttat agactataac aaacacttgc aaagactttc cactggattt ttgatttctt
    11401 actaaaatat cctttgtagt tttatcattt cttaaaacaa atttcattac aatttcattt
    11461 ttgataatta ttattactat aaggaaagat ttgtttttta agcatatatt gagtttaaaa
    11521 gtgcttatag ctttactttt attctttgga atgataagtt tatttatagg agttatcagt
    11581 atcaatgtaa aagatattct taatcttaac tccactcaac tagaaatcat aaccctcaca
    11641 agaattccta gacttatagc gattttactc acaggaatga gtcttagtat atgtgggctt
    11701 atcatgcaac aactcacgca aaataaattc gtttctccaa ctacagcagg gactatggat
    11761 tgtgctaaat ttggcatact tatttcttta atatttttta ctggagcgtc ttttttcact
    11821 caagctatca ttgcttctgt atttgcactt ttgggttctt ttatatttat tcaaatttta
    11881 agaaaaatca aactcaaaga tgtgattttt gtacctttga taggcttgat gtttggaggc
    11941 attattagtg ctataactac tttttttgcc tatgctttaa attatataca aaatatccaa
    12001 ggctggttac aaggcagtat ggcaaatgtt atgcagggaa attatgaatt gctctacatt
    12061 tctttaccac tttttatact tgcttatttt ttagctcata aaatcaccat agttggcatg
    12121 ggcgaagata tagctttaaa tcttggaatt tcttataatg ggatattatt tttaggcttg
    12181 atgattgtag gcattatcac tagcttagtg attgtaagcg ttggaattat ccctttttta
    12241 gggctaatta tcccaaattt agtagctctt tatctaggtg ataatcttag aaaaaatctt
    12301 atctatatag cactttgtgg agctttgttt ttacttgttt gcgatatcat ttcaagactt
    12361 gtcatctttc cttttgaaat gcctttaagt atcactacag gtgttttagg atctttaatc
    12421 tttatctttc ttttgctaaa aaggaaagct tatgcgtaaa aaaatgctga ttttaagctt
    12481 tttaacactt ggtatgatag ggatttttat acttgtgggt ttaaatggct ttgatgagta
    12541 tgccttaaaa agtcgttttt tacaaattgc agctattatc atagtagcta tttgtatcgc
    12601 tgtttcaaca gtaatctttc aaactttatg caataacaaa attctaaccc ctgccatcat
    12661 aggattagat tctttatata tgttacttca aagtgctctt atcttttctt ttggtgcagc
    12721 taatttaagt gtttataaaa acgatatcaa ttttttaatc actctagttt gtatggtggt
    12781 tttttcacta ggactttata aaattttatt tagtagcgat agaagtattt atcttatcat
    12841 gcttttaggc ttagtttttg gaacactttt tagcacttta agctcttttt ttgaagtatt
    12901 aatcgaccct gatgaattca tggtaataca aggaagaatg tttgctagtt tcgataatat
    12961 tgcttttgat gttttaattc ttgcttatat cattagcttt ttaagtttta tatggatttt
    13021 tcgctatatg aaatttttag atcctttaaa tttaggcaaa gatttagcga taaatttagg
    13081 gataaattat caaaaaattt caaaacaatt gatgattatc atagctattt taacttctat
    13141 tagcaccgca cttgtaggtc ctataacctt tttagggctt ttggtggtaa atatcactta
    13201 tgaactattt aaaactgcaa agcatagtat tttgctaagc gcttgtatac ttattagtat
    13261 tttggctttg cttggagggg tgttttttgt ctctagagtt tttgattata atgccactat
    13321 aagcatggtt attaatttct taggtgggat atattttatc tatcttgtat taaagggtaa
    13381 taaattatga ttaaactaaa aaatatcacc aaattttatg ataataaagt cattatttca
    13441 gatcttagcc ttgattttca taaaggcaaa atcacttcta taataggagc caatggcgct
    13501 ggaaaatcca ctcttttagc tctagcaagt cgtttgataa aacctagtag tggagaaatt
    13561 tatatcgatg gaatgaattt aaaaaattat aaagagcaaa tcttagcaca aaaaatttcc
    13621 attctcaaac aacaaaacaa tatcaattta agattaaaag ttgaagaatt agtcgctttt
    13681 gggcgttttc cgcattctca aggaagactt aatacaaacg ataaaatcaa aatcaatgaa
    13741 gctttagaat acatggaact tagcaactta agaaatgaat ttttagatac attaagcggg
    13801 ggacaaaagc aaagagcttt tatagccatg atcatcgctc aggatactga atttataatg
    13861 tttgatgaac ctttgaacaa tcttgatatg aagcatagcg tacaaatcat gcaactaatg
    13921 aaaaatttag tcaaagactt taacaaaagt atagctgttg tattacatga tattaatttt
    13981 gcttcgattt attctgatga aatcatagcc ttaaaagatg gaaagctttt aaaacaaggc
    14041 tcaaaagatg aaatcatcaa tcaagaaaat ttaaaacaaa tttatgatat ggatataccc
    14101 gtaagtcaaa ttaatggtaa gaaaatttgt atttattttt aaaaaggaga aaatatgaaa
    14161 aaatctttag tttttgcatt ttttgcattt tttttaagtc taatcttaac agcttgtaat
    14221 tcaaactcaa atgaaaacaa cgcaagttct acaacaaaaa ccaacactgc tacggtgaaa
    14281 gttttgccta ttagtatgag cgatgagggt gatagttttt tagtgaagga tagtctagga
    14341 gaaaataaaa tccctaaaaa tccttctaag gtagtgatct tagatcttgg aattttagat
    14401 acttttgatg ctttaaaatt aaatgataaa gtcgttggcg ttcctgctaa aaatttacca
    14461 aaatacctac aacaatttaa aaacaaacct agtgtaggtg gagtacaaca agttgatttt
    14521 gaagccatta atgctttaaa acctgatctt atcatcattt ctggacgcca aagtaaattt
    14581 tatgacaaat taaaagaaat agctccaact ttatttgtag gtcttgataa tgcaaatttt
    14641 ttaagctctt ttgaaaacaa tgtcttaagc gttgcaaaac tttatggttt agaaaaagaa
    14701 gctttagaaa aaatttcaga tattaaaaat gaaattgaaa aagccaaaag tatagttgat
    14761 gaagataaaa aagctcttat cattcttaca aattctaaca aaatttcagc ctttggtcct
    14821 caatctcgct ttgggattat tcacgatgtt ttagggatta acgcggtaga tgagaatata
    14881 aaagtaggca cacacggaaa aagtatcaat tctgaattta tattagaaaa aaatcctgat
    14941 tatatttttg ttgttgatag aaatgtcatc ttaggcaaca aagaacgtgc tcaaggcata
    15001 ctcgataatg cacttgtcgc taaaaccaaa gcagcgcaaa ataaaaaaat catctatctt
    15061 gatccagaat actggtattt agcaagtgga aatggactag agtctttaaa aactatgatt
    15121 ttagaaatca aaaacgctgt aaaataatat aacttcgcaa gggctagtct cttgcttcga
    15181 tacctaataa aatacttggg attttcaaga aagttttagt ggcggacaga gagggatttg
    15241 aaccctcgag acccgttaag atctgcaccc ttagcagggg tgtggtttca gccactcacc
    15301 catctgtcca ataaagtaaa gtatgattat acaaaaaaat aaataatacc tagcttaaaa
    15361 agctaggaaa aatcaaaggc taagataagc caaaagcaaa gttacaacaa cccctactcc
    15421 aagaactgca aattgcttac ttctatcttt tttatttgca aacaaagtaa tcataagccc
    15481 tgaaatataa agcataaata aagtaatacc aaagcctaca ctaagcacag aaaaatacca
    15541 agcaccctta tctttatgaa gcataatcat atcgccaagt aaagatcttg tttttaaggt
    15601 aatattgtat tcattagtag atttttgagt tatattagca ctataatgag ttccacctat
    15661 tgttatacct ttatctttac ttttaattat atttgtatta gatggtactt ttaaaccatt
    15721 tgtttttaaa tactctatta aagcttctct ttctttacca ctttctataa cttttgacaa
    15781 ttgatactgc tcaactttta agcccacatc ttgattaata ccaaaaatat acgctatacc
    15841 cgttaaagca aaaagcaaag cacaaggcaa aaagaacaaa ctaagataga tatgaacctg
    15901 tctaaacaat ttatttttat tgatcatttt aactcctttt tgattatcaa aatttgtgat
    15961 attttgacaa aacaaagtga agcaaaagtg aattttaaat aaaaagttta tattttttaa
    16021 aacaaagaaa agaaaaagcc ctatgattat agggcttaag aattattttt tatcaatcac
    16081 ttgataatta taaggagcaa gctctttatc atgctctaaa agttcttttg gaggattgcc
    16141 attaacatct ttttcatctg catagtaacg ctctccagct ttatgattat taacatctac
    16201 tttataataa agctctcctg gattaaattt ttgaatatct tcaaaaccta aatttgaagt
    16261 tttaaaatct ttaattccat ttgccgctgc aatttctaca agtttagttt gtcccattct
    16321 tgccatatca acagcttgca ataacattct tgaagcttcg cgaggattat ggaaaccagt
    16381 tgagttttca gcattaacaa aatccgctct catttgagct ttacgatgaa gttctaaaac
    16441 ttcttttagt tcttcgctaa tttttttcgc atcagctttt ccatcgcttt ggaatttttc
    16501 catattacct agttcatcgc gtagtttttt agtatccata atcaaactaa caattgcata
    16561 ctctgcagtt ctttgatcat gcgcaacgct gttttgtatg tcaagcactt gagcttttaa
    16621 ataatcttcg ctttgtttat gacaagactt acaagcagag ttaatatctc ttaaaggaga
    16681 agtgatattg tgttgagtaa cctttttagc tccttctcta acataaggca tatgacaatc
    16741 cacgcaactt accccatttg cagcatgcac accgccacta taaagttcgc tttctggatg
    16801 ttgaatttta ataatttgtg cccctgttaa tttatgagta aaatcagctc caaatactcc
    16861 acgaacttta tcataataat catctagcat ttcaattcta aatggctgtc cttttttcca
    16921 ctcactccaa ggaaaagtta aaactatacc atcggtttca atctctttag ctttattacc
    16981 atctctccaa aattcatact catcataatt tttctgagtt ccattccacc attttttaga
    17041 actatcatct acaatagttt cacccattac ttttactttt tcccctgttg gtttaaaata
    17101 gtattcaaca tggcattgag agcaaactaa agttctcatt tcttctcttg tagcttttac
    17161 gccttgcact ggatcttttt catatcctct agaaactaaa gcattaatag ctgctggacg
    17221 agtaagtctt aaactcatat catttggatt gtgacaatct gcacaagtta cacccattct
    17281 tttaccacca tgtggacctg catgttcagg tgaattttcc actataccat caacggctgg
    17341 gatattttta atcatagtcc aataatttgt agagttaaaa gcagtaaaat ctcctttagc
    17401 aacatttttt ataagccatg gagtccatcc actatgacaa ttcatacaag ctgcgggctg
    17461 gcctttaaaa gcagcaaggc cgtgagcatt aagaaaatct ttgttgtttc ttgctgtttt
    17521 catttgatct acttgaaccc aaaaatgccc tctttcttca ttgaaatcaa gactaaaagg
    17581 atatcctgcc caaagtatgg ttaattgagg aaagcgaatt aattttgaat aagctaaatt
    17641 accaccaaat tcagtagctt taggctcttc tttttcaact gttaaataca tttttagctg
    17701 ctctggaaaa accttacccc atttttcaaa atttggatca tcatcactaa gcaaagaaaa
    17761 atcagcattt gctgcaatgg catttttatt tgcttcatct tctttttttt gattgatatc
    17821 attatttagc cataaaactc ccactataag taaaaccaaa acaacaatac ccaagcgtaa
    17881 aatatttttt ttcattcatc ttctccttat taaattccgt gtttatgtcc aacatcttta
    17941 tgacaagaag cacaatttaa tgacttgtct gcatgtggat ttgttgtagc attgatagct
    18001 gtttgagcaa aatctgcatg acagcgtatg cagttttctt gcaccatttt tctgcttttt
    18061 tcagtcgcac tcaaatttgt aggcaactca tcaagtttaa aagtaaaagc ataagcatgt
    18121 cctaaaccac tttgcgcttt agctatccac ttagctacaa aattatgtgg caaatgacaa
    18181 tccacacaag ttgctcttgg ttcgcctttg actttttgag agtgtggtcc tgccatgtat
    18241 tcgttataaa cttcattcat aatatggcag ttattacaag attcacttgc attgcttaaa
    18301 taagatgtgc ccttagcgtt ataaaaagta taaaacccaa ccgcaaagaa aacaaaaagc
    18361 aaaacaagaa aaatagtaaa aagattcgaa gttttcttca aaattttcct ccttaaaatt
    18421 atcatttctt aaaatcttca atgaaacaac aatgtcacag aatttcccag aaataaattt
    18481 tttaatttta acatagatga atttaatata attttaaaga tatatttact cttaattaac
    18541 ctaaaaaatt taaaactttt attcaataat ttcaaaataa atgataaaat acaactaaaa
    18601 aaggaaaaat taatgcaaac aagtcctgat atgtttatca atcgcgaact ttcttggctt
    18661 cgctttaatt ctcgtgtttt agaccaatgt tctaaaaatt tacccttgtt agaaaaatta
    18721 aaatttatag ctatatattg cactaattta gatgaatttt atatgatacg cgtcgcaggc
    18781 ttaaaacaac ttttttcagc tggagttaat gcaagcagta gcgatgaaat gacaccgttg
    18841 caacaattaa aagccatacg caaatactta caccaagaaa aagagctttt ggagcgttat
    18901 tttaatgaaa tcacaagtga attagaaaaa gaaaatcttt tcataaaaca ttatgaaaat
    18961 ttagatgaaa atttaaaaca aaaatgtgat gagtattttt tctccaatat ttttcctgtt
    19021 attgttccaa tagctgttga tgctactcac ccctttccgc atttaaacaa cttatctttt
    19081 tcactagcgg ttaaaatttg cgataaagcg catcctgaac ttgtaaaatt tggaatgatt
    19141 agaattccga gagttttacc tcgtttttat gaagtaagtg caaatattta tgttcctata
    19201 gaaagtatag tccatcaaca cgcagaagaa atttttccag gctataaact cttagcttca
    19261 gcagcattta gagtgactag aaatgcagat atggtaatag aagaggaaga agctgatgat
    19321 tttatgatga ttttagaaca aggcttaaaa cttcgcagaa aaggagcttt tgtaagattg
    19381 caaattcaaa aagatgcaga tgagcaaatc gtagaatttc ttaatactca catgaaaatt
    19441 tttcataaag atgtttatga atattctatt ttactcaatc tccctagcct ttggcaaatc
    19501 gcaggaaata aaacctttac gcatctttta agcccacttt acacgcctaa aactttacca
    19561 ccttttgatg aaaatttatc tatttttgac gctgtagaaa aagaagatat actcatcata
    19621 caaccttttg aaagttttga tccagtttat aaatttatca aagaagcaag caaagatcct
    19681 gaagtaattt ccataagaat gacactttat agagtcgaaa aaaattccaa tatagttcaa
    19741 gctttaattg atgctgcaag tgatggaaaa caagtaactg tgatggtaga attaaaagca
    19801 cgctttgatg aagaaaataa tcttcattgg gcgaaagctt tagaaaatgc cggagctcat
    19861 gttatttatg gcattacagg ttttaaagtc cacgctaagg tttctcaagt catacgcaaa
    19921 caaggagata aacttaaatt ttatatgcat ttaagtacgg gaaattataa tgcaagcagt
    19981 gctaaaatct atactgatgt gagttatttt acaagcaaag cagaatttgc aagagatacg
    20041 acaagctttt ttcacatctt atcgggcttt agtaaaaatc gtcgccttca aactctttca
    20101 atgagcccaa atcaaatcaa agaaaaagtt ttagaaatga tacgcattga aacaagcaag
    20161 aaaaatgaag gtgtcattgt agctaaaatg aattctcttg tggatagtga tatcatacaa
    20221 gcgctttatg aagcaagtat ggaaggagtg caaatcgatc ttatcatacg cggaatttgt
    20281 tgcttaaaac ctgatgaaga atacagcaaa aacatacgcg ttagaagcat cataggaaaa
    20341 tacttagaac atgctagagt attttatttt aaacatagtg agccaaatta ttttatatcg
    20401 agtgcagatt ggatgccaag aaatttagaa cgccgtttag aacttatgac tcctatatat
    20461 gatgaaagaa gcaaagctaa attagctcaa tttttacgct tgcaacttag tgataatgtt
    20521 ttagcttata agcttaaaaa taatggagaa tatgaaaaaa ttccttcttc tgaaaaaatc
    20581 atagattctc aacaaacctt agaagaatat gtaagtaaaa tttataaaac acttaaaaaa
    20641 gatacagatc aaagtcgtgc aacgcactta gcttccaaac ttttcaaaga aaactaaaag
    20701 tttttagggt tttttactct aaagacttat ttacttgttt gttataaaaa agggctttaa
    20761 gataaagccc taggagattt cccatagaaa taaacaatta tttctaaact ataaaaagat
    20821 ttagaaatga tttttaagat taaattttat acttaagtcc tacttgacca cttaagtaag
    20881 tttcattttt attatctact ttacctgcta gtatttgttt agcaccaaag ccaagattca
    20941 tactgagttg atttgtaaaa tctacattac cccctacgat aatttgtccg tatgtttttt
    21001 tcttgttgtt agcttctaca ctagtaaaga aagcattatt tacagctagg ttagctgtgt
    21061 aatcatcacc actattgata acaaattgtt ctatttttgg agttacaaaa atataagagt
    21121 tttcattcat atattttcta aattcagcac ccacttcaat acttacagaa ttgtttttca
    21181 tagaatcaat atctttagca atagcaccat tttctgtatg agatggagta taactgaaat
    21241 aataatttac tcccgcaaaa ggtttaataa ataaagtatt atcactaaag tcaaacacac
    21301 gacctgcatt agcactaagt cctaagaatt tacttgtata atctgagtta tatgcaccat
    21361 ctatttaaac attgtcttgt ttagttggag aaacttgagc ataagcttta agattaagtt
    21421 cccattgtgg agctatattg atagtagaat acatacctaa ttggaagtta tcgctttttt
    21481 gttctaaatt attgtctttg attttagcat ttgcataagt aaaataagca ccccataaaa
    21541 catcatcatt agcttgttta tctacaccta tagtagcacc atgcattgca ccactatccc
    21601 catcgataat gttagcacca ccaaaagcat tagcccaaac actattggta tattcattta
    21661 catagcttgg tctcatatca ctatctaaag cagcaaattt aagaccattc attttagaag
    21721 cataagttcc aaaaggattg tttagcattg ctacacgaga acctatagaa acatcattag
    21781 aaatattcat agtggtattt actgcactag aagctgaatt gagattagat acagatttac
    21841 ctgtattgtc tgtgtctttt ttgatatcta aagctagttt tacaccttct ctacttgcta
    21901 aatctgctcc tatacttcct aattgttctg tgatagaacg aagtgctagg atagaagctt
    21961 tatcattagt actaagattt aaatttgaat ttttatttac taaatcaatg tatttttcat
    22021 catcgatttt accgccattt ttctcagctt cttctaacat tgtttgaagt tcagtttttt
    22081 gtttttcaag agcttctttt gcttgtttcc attcttcatc ttgactagaa tcaaattcat
    22141 ttttaagcaa tttatcgata gtatctatat ctacttgaag ttgaactagc ttatttttag
    22201 ctgctgcagt agcacctcca ttgattacta agcatttatt gccaccgcag ttttgaacgc
    22261 taagtttata atctactaaa cctccgctat atttgtcatc agtgatatcc agtacagttc
    22321 ctgcttccaa aggatctttg ccttgaacac tggttgagat ataatcactt gcgaatttta
    22381 aaagtaatgc acctgcgtta ttatttgctt ttaaaatatc ttcattgaaa tctttagctt
    22441 gaactattac tacattattt gcttctaagt ctgtataaga gcgcttcata agtccaaaat
    22501 ttgaattttt aagatttgca gttccattta ccttaacaaa atttccataa gtagcaaaaa
    22561 gcgttttatc ggcagtaaaa tttccattta tagttaagct accattagca ctttttcctt
    22621 caactgctcc attataaaga attatacctg aacttttttt tcatcctcgg taatagcttc
    22681 acctcctgag ctagtcatag ttaaatttcc attaatcacc gaagatgcaa aagcttgtaa
    22741 aactatatct gttgttttaa cctctttagc agtagcgttt agatttgtta cataagcagg
    22801 attttcttta ttgttatgtg taaagcttaa agtattgtct ttaccgatat caagttaaat
    22861 cgataatcag cgctatcata atcatcgttt ggtaaatccc aaacacccat tttgatactt
    22921 aaatcttttc ctttgtaatc atcaggattt ttaagattga tatccttacc attttcttca
    22981 aaataatttc ccacatctga agaccctgta agattgattt cttcagcaaa agcactcgaa
    23041 taaagcaaag ttgctacacc taagcttagc aatatcttgc tcgaagcatt tttcttcata
    23101 agtttctcct tcaataaatt taaactgaag gaataattat accccccccc taaaaataag
    23161 cttaaaaata aaactataaa tttttaatga aaaattataa aacctaatat atcaaagttt
    23221 taagggtaat aaatcgttct taacttcata taaaaaattc taaaaatttg aaataaactt
    23281 atgatttact taaaattagc gtgatggtgg aagcgagggg aatcgaaccc ctgtccaaaa
    23341 ataatcccac aaagacctct acatgcttag caaagatgac tacttcaccc tacttcgctc
    23401 atcttccaaa actcaaaagc aaggctaaga ccttatttca cctcaacgct tgtcaaacgc
    23461 aaggctacac tatcaaaaat gaccgaaaat taagctagat agtatgactt aaatttcagg
    23521 ctcaactgaa cttacgcagc tttagcgtaa gcaggagcga atttaacgtt gtttgcgttt
    23581 aattttattt gggcttttta cgctttgccc aaagcgacat gccatctaag cagacttact
    23641 cctgtcgaag ccaagtcgct cccttattta gaaataatat ttggaacatt aacaattaaa
    23701 ggattaaaaa ccgctaaaac agaatcatca ttttcatacg aacgacaata tttttcaaat
    23761 tgatcactca tcaaaagcat ccaatccgta aattcatcac tagcaggccc gttaaagcga
    23821 tttgcttgcg ccatcatctc ttcacaaaat acacaaaaat cagtcacttc ttcaagattt
    23881 aaacgtcttg ctgcccaagc ggtattgtgt gctaaagttt caagctcttt tatggcttct
    23941 ttataacgca cgctatcgct tccaagcttg atgattaaag gttcaaacct atcgcacatg
    24001 gttctaaaaa attgtaaaaa tttttctata tcgtcaattt cataatctaa ttctaatttt
    24061 gttaaaattc ccatttttaa accataatca ttaaagttta atgtaaattc tagcaaattt
    24121 tagctaaaat cttattttaa tttttccaaa atataagcaa agatatggat agaatagtag
    24181 aaatagaaaa atactccttt gatgaaactt acgaaacttc gttgcgtcct tcaaattttg
    24241 atggttatat aggtcaagaa agcattaaaa aaaatttaaa tgtctttata gctgcagcta
    24301 aaaaacgcaa cgaatgttta gatcatatac tttttagcgg tcctgcagga cttggaaaaa
    24361 caacactagc caatatcatc tcctatgaaa tgggtgcaaa tatcaaaaca accgccgctc
    24421 ctatgataga aaaaagcgga gatttagccg ctattttaac taatcttagc gaaggggata
    24481 tactttttat cgatgaaatt caccgcttaa gccctgctat cgaagaagta ctttaccctg
    24541 caatggagga ttaccgcctt gatattatca taggtagtgg cccagctgct caaaccataa
    24601 aaatcgattt accaaaattt actcttatag gggctacaac tcgtgcaggt atgcttagca
    24661 atcctttgcg cgatcgtttt ggtatgcaat ttagattaga attttacaaa gatagcgaac
    24721 ttgccctaat cttgcaaaaa gcagctttaa aacttaataa aacttgcgaa gaaaaagccg
    24781 cacttgagat cgctaaaaga agtcgttcaa cccctagaat agctctaagg cttttaaaaa
    24841 gggtaagaga ttttgccgat gttaatgatg aagaaattat cacagaaaaa agagctaatg
    24901 aggccttaaa ttctttagga gttaatgagc ttggttttga tgcgatggat ttaagatatc
    24961 ttgaactttt aaccgctgct aagcaaaaac ctatcggact tgcaagcatt gctgcggctt
    25021 taagtgaaga tgaaaatacc atagaagatg taatcgagcc ttatttatta gctaatggct
    25081 atatagaacg cactgcaaaa gggcgtatag caagcacgaa aagctatagt gctttaaaat
    25141 taaactatga aaaaacttta tttgaggagt aaattttgca aaatggaaaa ttctttctta
    25201 taagctttat tttagtcatt ttatttcttt tgctttacct ttttaaaggt tttttacttg
    25261 taattatcat agctagttta atggcggtag ctacctcaaa tatcaatgcg aaatttttaa
    25321 atcttactaa agggcataaa tttttagctt ccattcttac aacaacttgt atggttttgc
    25381 ttttctttgc accttttgtt tatgctatga tagaacttgc caaagcttta aagaattttg
    25441 atattaattt agttacacaa acacttgatt atgtcaaaaa ctatcaattt accttgcccg
    25501 aaagctttaa ttttttagaa cctaaaatca aagaattttt agcttctata gatttaaata
    25561 gcatttctaa acaaattcta agttatgctt caagttttac aaaatcagga gctaaatttc
    25621 ttatagatat ggttttaatt tgtgtgtttt atttctttgc aaatctatat ggaacagaac
    25681 ttgttatcta tcttaaatct atcattccta ttgataaaaa agaactcgat gatgttttaa
    25741 gcgaagtggg taatgttatg gctgttgtgc tttactctat ggtaattgta gcaatatttc
    25801 aaggtgcact ttttggttta atcacaatgt tttatggtta tgatggaatt ttaatgggag
    25861 taatttttgc tgtaagttct ctcatacctg ctataggagg agctttaatt tatgtgcctg
    25921 taagtcttta tgaatttgcc tcaaacaatc ttaactcagc tcttgttatt tttatttatt
    25981 ctgtaattgt aatttctttt atagcagata ctttaatcaa acctttaatc atcaaatgga
    26041 tcaacaaaaa acttgtaaaa actcccacta aaatcaacga acttttaatt ttcttggcca
    26101 tgatagcagg aatttcaacc tttggttttt ggggtattat actaggtcct gcgattttaa
    26161 ctttttttgt atcaacttta agaatgtatg tgattttaaa agataagaat ttaatttaac
    26221 ttgccttaaa aaaggcaagt tttatgttct aggcttttga gcctatcatt ttagtaggat
    26281 caacaaattt attgaaatct tcttcactaa ccaaaccaag ctccattgcg ctttctttta
    26341 aagaaatacc ttttttatga gcatttttgg ccactttagc agcgttttca taacctatgt
    26401 gtggatttag agcggtaact agcattaaag aattatgaag attatgatcg atttttacac
    26461 gatttggttc tatgcctaca gcacaatgga tattgaatga atgcatagaa tcagccaaca
    26521 aatcaagact ttgcaagaaa ttataaataa tcacaggctt aaacacatta agttcaaaat
    26581 ttccttgact tgctgcaaat ccgatagctg catcatttcc catcacttgt acagcaacca
    26641 tagtaacagc ttcacactgg gtaggattta ccttacctgg cataatcgaa cttcctggct
    26701 cattttcagg aatgataagc tcaccaagac cacatcttgg acccgaagct aaccatctta
    26761 tatcatttgc aattttcatt aaatttgcag ccaaaccttt catagctcca tgagtaaaat
    26821 taatcgcatc atgacttgtt aaagcatgaa atttatttgg acttgaaata aattttgtac
    26881 ctataagttg agttagctct tcgcttactt tttggcttaa ttctggatgt gcattaagcc
    26941 ctgttcccac tgcggttcct cctatggcaa gttctcttaa agttggtaaa gaagcgatga
    27001 tttgctcttt tgaatgtaaa agcatagaaa gatatccact aaattcttgc gctagagtaa
    27061 gtggagtagc atcttgtaaa tgcgtgcgtc ctatcttgat aataccatca aattctttta
    27121 cttttttttc aaaagttgca ataagctcat caagcgcagg gataagcttt ttctctactt
    27181 gctcaaccgc aacgatactc atagctgttg gaaaagtatc atttgaactt tgactcatat
    27241 taacatgatc atttggatgt acaagctttt ctttgcgaaa atccccgccc atgatttcag
    27301 tggcacgatt tgcaataact tcattcatat tcatattgct ttgtgtgcct gaacctgttt
    27361 gccaaatcgc aagtggaaaa ttatcatcaa atttacctgc gataatctca tcgcaagctt
    27421 gaactatagc atttttctta gcatcatcaa gtttgccaag tttgttattg accaaagcta
    27481 aagatttttt aagatttgca aaagcataga ttaaaacctt tggcattttc tcacaaccga
    27541 ttttgaaatt ttcaaaactt ctttcagttt gagctcccca atatttgtca tttggaacct
    27601 taacttcacc catggtatca tgttcaactc tgtattccat aattttttcc tttgattaaa
    27661 attttattta ttataagcta aaaaaataaa tactttcaaa aacgttttcc cactgaactc
    27721 attaaatgca attcataggc attatgagaa aatctattca ttaacataaa ctgccaaaat
    27781 acattgtttt tatataaaaa ttctgaatta aaaccttgac ttaaaatatt atcttttaat
    27841 ttatattttt gaataaaagc aataggaaaa tcaacaaaac tagccttatt ttctaaagtt
    27901 cttccataaa ttcttttttc aaaaattaca aaagtagaaa aagaagcttg ataatcatct
    27961 tgctctatat ttttagcaag attaaaacct aaatttgcat ttatgctatg atgttttaaa
    28021 ctttcataat ttttagcaaa aggactttta ttttctttaa aatcttcttg ataaaaaaaa
    28081 ctatgtgtaa aatacattaa aggattaaaa ataaaatctt gacctaaaat aatatcttta
    28141 gttacaccaa gctgggctga agtttgcaat gttttatatt tgccttcaat tggctgctct
    28201 actacaaaac gattaagagt attaaatcct acacctatac ctaatccact taatattttt
    28261 ataaaatcta aatcatggtt ataattaagc aataaatcca tgttataact cttcaaatca
    28321 ctaccattat taaaattaaa tttagcgcta gaaagagata aagcataagc taaaaagcct
    28381 gatgagaaat tttctcctaa agagatatta gcacctgttt tttgacctga aaaatcttta
    28441 tctttatagt atttataact tggagtaaga tgccaaaaat attcttcatt gctaaaaatt
    28501 ctaggtaaat aagtactagc aagtaagata ttattgtttt gtgcaaaatt attaatatta
    28561 agaggatgaa gggtaaataa catattattt tgcattaaat tagattgatt atgattacta
    28621 aaagtgctta aataccctga accttctatt ctatttaatt tagtctttac atctattcca
    28681 ttatctaaag aagcaaaaaa ttcctgataa gtctgactca agtctgccct agatcgcaat
    28741 tgtcttaaag catttcccaa gcttgtatta ggaatttcgt aagcatttgg ctttaaatta
    28801 ggttttatta aggttttatt aatactcact aaatcatcac ttaaaacaaa atcaaaattt
    28861 aaagcatagg tattttgtat caaaacatga ttaaaagatg ataaactttt ttccaaatct
    28921 cctaaattaa ttttcactgg cttatttaag atatagtatt taggtaaagg aatatattct
    28981 aaattcccgc tcttaatatc ataagttttt gcaatcagtt tagaattttt ataattacca
    29041 aaatcaagtt gcaatttaga atcaactcct tcttgagtat aagttccttg cacggttaaa
    29101 tcattcaaat cttcatttcc aggtctaact atgcctttat tgtttaaatt ttgccctaca
    29161 ataccattac cgcttaatat tgctttttgt tctacataag cattattttt aacttttcct
    29221 ttaagcttta attctccttg tttgattaaa gttgcaccct cataagtatt ttgaccactg
    29281 ataatcaaaa taccttcacc ttctttagat aaccctatgt taagattagc taaatgtgta
    29341 ggtttattaa tagcacttga taaatgagta ctttcatccc attttctttg actaatatca
    29401 ttagaaaatt cagcatcata acctgcagtg tttatagtat aataagctgt attaggttct
    29461 tgctcatatt ttaatacatc ctgatcactg agtctgtttg catctaaaat actcagtcct
    29521 tttaacgcct tttgtgcatc taaaattcct tgtccaaata attcttcttt ctcaactcta
    29581 actactccat taatagaact aatagtagaa gtattaagtt tttgtgactg cgcactatct
    29641 ctattatccc aaatataatc actataatca atccattgtc cattaacttg aacttgtatt
    29701 ccattgtaaa gctgttttaa atcccgtttt atttcatctt ctatcctagg tggatcttgc
    29761 gaaatataca caataagaaa tttaggttga tttgttccat cggttacttg tttaacagta
    29821 aattttggag ccttataatt tttatttgct gtacttaaca gtatatcagc aatttgctta
    29881 ccatccaaaa aggggaaatt ttgcttgacc agtgccgctg ttccacttac cataggtgct
    29941 gccatagaag ttccactttt ttttgtaaac ttatcattag tgcttgaatc aacattatta
    30001 atatttactc cagcagcaac taaagaaaaa ttcgtagccc ccttaaaacc attactaaaa
    30061 tcagccaaac cttgactttt aattattaaa gtcccatctg attctaaagt aatctcattt
    30121 gcatccaaag ctccaacagc caaccaagct cttaaagatt catcataact tggtaaaatc
    30181 gcatgcaaag cagggctaag aattccttca ttaccagcag caaatacatt taatactccc
    30241 ttgtccttgc taagcctcat catatcatta gcaaccttat ctgctttcat aacatattcc
    30301 aaaggagtat tacagatatt atagcttgtc ccttgattag tttgagtaca atctactaat
    30361 ccagaatttg aagccttaag attaaaataa ggataaaaat taatacccca gctattatta
    30421 ataatactca catctttgaa aaaattataa atatcaggaa tttgagtgta agagccattt
    30481 ggaaacaccc cagctccata aaattttgcc ccataagcca ctccataagg tttgctatcg
    30541 cctatctttg ctccaacagc tatacctgct acatgacttc cgtgtgttga ttttttcaaa
    30601 tcaggtataa gctgtttccc agctgtatca gtaggataag tagactttaa aatcttatcc
    30661 tttaaactaa tatgatcttg attaaaagca tcatcggcta cacctattat aatagtatct
    30721 ccactatacc ctagcttatg tactttatca atatgatgaa gttcaaattc gcttaaagca
    30781 aaaagtttac aaactaaagt taaacaaaaa aattttttca tttctattct accgttacgc
    30841 ttttagccaa atttcttggc atatccacat cattgccaag tcttatggaa atttccatcg
    30901 ccaaaagttg agtaatgacc atcatttcaa aaaattcaca catataatga tcttgctcat
    30961 tggtttttat aaaatcatca cttaaatcaa attctaaagg tgaaatgcta agcactgtag
    31021 aatccctagc aataagctct tcaacatttg attttgtttt ttcataaagc atgtgctttg
    31081 gcattaaagc tatagtataa agcttagaat cagccaaagc aatagggcca tgtttcatct
    31141 ctcctgcagg ataaccctca gcgtgaagat aagataattc tttaagtttc aaagctcctt
    31201 ctaaagccaa aggataaaac acatctctgc ctataaagaa aaagccatgt ccatctaaat
    31261 aacgcttgga taaacgatga attttttcat gtaaagcctg ttttacactc acgcaatttg
    31321 gagtatgcaa aagtgcttta atttcagcag aaacatttaa atttcttttt tgtgccataa
    31381 aaatagcaag catccaaagt gttaaaacct gagtagcaaa agctttagtt gaagcaactc
    31441 ctttttctat gcccgcacga gttaaaagac ttagatgtgc taaacgcact atattagaat
    31501 tatccacatt gcaaattgca aaagtcttag caccctgctc ttttgcaatc tttaaagcct
    31561 ctaaagtgtc tgctgtttct ccactttgag aaataacgat aaataaagaa tcttttttta
    31621 taattgcttc acggtatcga aattcacttg caatttctac tttagcttta actttagcaa
    31681 ttctttcaaa caaataagca cttgccattg cagcatgata gcttgttcca caagcacaaa
    31741 gcgtgatttc atctacttga cttaaatctt cattgtttag ctcatcaaaa acgacttcat
    31801 tgccttgaat acgccccatt aaaacttcac tcatcacgcg actttgttca taaatttctt
    31861 tttccataaa aaaacgaaag ccgtcttttt ttgcataagc cttatcgcct gaaagcttag
    31921 aaaaacaaag tgattttaaa atatcatttt cataaacgac aagctcatct ttactcgcgt
    31981 atcccaagct taaatcttca agatacatta cctcatcaca acttcctatc aaaggcgcat
    32041 cacctgaaga aaaataccat tctttatttg catttttacc gataatcaaa ggagcagcat
    32101 tttttgcaaa atacacatga ttgggatctt tttttgttac taacaaagta gcaaaagcac
    32161 cgcgaagttc tttgatggtt ttttgccaag cttcaaaaac tcccaaattt cttgcatata
    32221 attcaaaaag ctggacaata acttctgtat cggtttgact taaaaaactc acgccttctt
    32281 tttcaagttt atctttgatt tctttataat tttctataat accattgtga atcacacaag
    32341 aatactgtcc taaatgagga tgtgcgttga tttcagtagg cttaccatga gttgcccatc
    32401 ttgtatgacc tatagcaaaa ccataacctt gactttcaaa atccgtgcat ttattcgcca
    32461 aattttcaag ctttcctaca gctttaaaaa aactgagctc tccttcttgc atcactgcca
    32521 tacccgcact atcatagcca cgatattcca attctttaag tccatttagt ataatttgtt
    32581 ttttttcatt atttcctata taacctacga ttccacacat ttttttactc acttattaat
    32641 aaattaacta acttttgctc gctatgttct aatttttcat tcttttgaaa aataaaaata
    32701 ttacgcgtcc tttgtcttat ggtttgaatt tttgctgcac ataaaacaag ttcaagttca
    32761 ttaaaaacat tcatcaaata cgccattaaa ccctgctgat ctttcgtatt aagacctaat
    32821 ttggcataca ttttagaata gtttaagtct aattttaact catctttttt aatgattggc
    32881 tttttaattt ttttcaaatt aaaaccagaa agatttgaat ttaaaagctc gcaaagtttt
    32941 agtttttgct catcactgat aatattatca tattcaaatc ttaaataaat tttattatca
    33001 aaaagttcaa aaaaattcat gaaaataaga tttaaatttg ttaaagaact taaaataatg
    33061 gcaatattaa aatgaagtgg tgcaacaatt tgcaaactaa gatttgtttc attattaaac
    33121 caaaatttaa aatcattttc tttggctaat ttagaaatca taacaatatc ttcaaaagta
    33181 ttttttataa taaaaagatt tgatttgata tgtatgattt tatcttgcaa aatttcatct
    33241 tgctctaaaa aaatcttact tcttttaagt gttaattctt tttttactct tcttgcgctt
    33301 tcttcaagta gattttcatc ttcaaaacct tgttttgcat tttctaaaag tttatcaaga
    33361 actctaaaat aaaaagcatt ataatttaaa gccttagcct ttagccaagt taaagtatat
    33421 aaaagctcta aattttctaa attttctagc ttagaaacca agctacttac aacaatagga
    33481 ttgtatatat cttctttttc tacaagatct tttaaggcat tattgttttt aaatatctta
    33541 agaccccatt ctaaaatttc attctttaaa tcaaatttag agcaatacgc tctatatatg
    33601 cctgctaaag aaatttcatt ttcactttct atagcgctta aaagtatcac aagctttaaa
    33661 atcatttttt catcggtttt aagtttttgg agtatctcaa gctcatcttc gtatttttca
    33721 aattcactta acataagaaa aacttgctca tcaaaactat aatttccttc ttcatcgctt
    33781 aaaaaacgaa ctgtccaaaa aggcttacat aaatctttta aaattccact atcaagcaaa
    33841 agttttaaaa cacaaaaact atgcctttta taaaaaattt tctcaaaaag tattaaagct
    33901 ttttctatat cttttttacc gtatttcaat cttcttaggg caaaaaccaa gttaagatcg
    33961 aaaataacat gtttatcttc aagttttaat aagtattcta aaacttccac aagagtttta
    34021 aatttatatt cttgtttaag agtatgattt aatccatctt gaatttgctt tgctaaaaag
    34081 tgtgtataaa aacctatagt atgcatactt tgcaaagcct tttgaaccaa caactcattt
    34141 gctccaaaat gttttttagc ttttttatac attaattcac tcaaatcatg aacattaata
    34201 agtaaaaatt catcctcatc tttagcactt aataaattca tcgctgattt taaagaaagt
    34261 aaaaaatctc cagctaaacg caactcgctt aaattttttt catctataaa atttaaagca
    34321 taattttttg gagaagtctt aaaaagaaca agcaaactct ctaaggatct taaatgattt
    34381 aatccgccaa aatcttttaa gatattaaat tcttgcttta taaatggaat gtcaaattct
    34441 ttaaaatttt ctagcaaaag cttggcaaaa tcatttttat tttcttttaa aatactctca
    34501 aattttgtct taatcccttt aaataaaatc ctagaaccac atatgaaacg agtttgtatt
    34561 atagaagtct taagctcatt gctagcatta taaagtccat taaattctaa gataaccgaa
    34621 tcaatttgca aatgcgcatc atttaaaatt tcgataaaag ccttaatcat aggttttaaa
    34681 tgaaaagcct taatatcttt ataaacaaaa atcaaagaaa tactttcatt aaaacaaaga
    34741 ctattatttg catatgcttt gcttgctaaa acacaaaaag ggatattatc acttggaggt
    34801 gaaaaatcat caaaataatc tttaagaact atatcataag ctttttttat gaaattatcc
    34861 atatttttag aatgatataa gctaaacgcc ccttgcttaa gaaaaaattt tctacaactt
    34921 tgggtatagg aactaagatt ttttttaaaa ataagctgaa tttcaaaaat aattaagtct
    34981 tagaaagtta aaattagaac tttataaaca ctcacagggt aagtgagcga caaagggtta
    35041 aaaatatgga aaaagaagtt attgcgtatt tggacaatga gacgataatt gactctcaaa
    35101 gtgtgaaaaa tacaaattta aaagaaattt attttgataa ttctaaagaa agtttagaag
    35161 tgatacgcca ttcttgtgcg catttgatgg cacaggcgat taagagcttg tatcctgagg
    35221 ctaaattttt cgttggtcct gttatagaag atggatttta ttatgatttt cgtgtagaaa
    35281 gtaagattgg cgaagaagat ttagtaaaaa ttgaaaaaaa gatgaaagaa cttgctgaag
    35341 caaagattga aatttcaaaa tatgaaatca caaaaaacga agctttggct aaatttcaaa
    35401 atgatgattt aaaacaagaa gttttattgc gtattcctga tggagctgta agtatttata
    35461 aacaaggtga atttgaagat ttgtgtcgtg gtcctcatgt gccaaatacg aaatttttac
    35521 gcttttttaa actcactcgt gttgcaggag cgtatttggg tggcgatgaa aaaagagaaa
    35581 tgcttactcg aatttatggg actgcttttg cagataagga aagtttaaaa gagtatttaa
    35641 ccattattga agaagctaaa aaacgcgatc atagaaagct tggaacagag cttaaacttt
    35701 ttacttttga tgatgagatc ggaggaggcc ttcctatctg gttaagtaat ggtgcaagac
    35761 ttagatctaa acttgaacat atgctttata aaattcatcg tttgcgtggt tatgagcctg
    35821 tgcgtgggcc tgagctttta aaagcagatg catggaaaat cagtgggcat tatgcaaact
    35881 ataaagaaaa tatgtatttt acacaaattg atgaacaaga gtatggtatt aagcctatga
    35941 actgtgtggg acatattaaa atttatcaaa gtgatgtaag aagctatcgt gatttgcctt
    36001 tgaaattttt tgaatacggc gtagtgcatc gtcatgaaaa aagtggggtt ttgcacggac
    36061 tttttagagt gagagaattc actcaagatg atgcacatat tttttgtatg ccaagtcaga
    36121 ttaaagagca ggttttagaa attttagctt ttgtggataa tttgatgaaa ttatttgatt
    36181 ttagctatga aatggaaatt tcaactaaac ctgaaaaagc cataggtgat gatgaaattt
    36241 gggaaatagc gactaaggct ttaaaagaag ctttagatga acaaggttta aaatacggta
    36301 ttgatgaagg tggcggggct ttttatgggc caaagattga tattaaaatc accgatgctt
    36361 taaaaagaaa gtggcaatgt ggaaccatac aagtagattt taacctgcca agtcgtttta
    36421 aacttgaata cactgatagt gataatgaaa aaaaacaacc tgtaatgttg catcgtgcga
    36481 ttttaggttc ttttgaaaga tttataggaa ttttaaccga gcattgtgcg ggtgagtttc
    36541 cgttttttat cgcaccaact gcggtgggta tagtgccaat aggcgaagca catattgctt
    36601 acgcaaaaga aattcaaaaa gaattattag agcttaatat cgatagcgag gtgtatgaaa
    36661 aaaatgagag cttaagtaaa aaaattcgta tcgctgaaaa gcaaaaatta cctatgattt
    36721 tagttttagg cgatgatgag gtggcaaagc gtagcgttgc tttaagagat agaagagcta
    36781 aagaacaaaa aaatcttagc ttggacgaat ttattaaatt agttaaggag aaaatgagtg
    36841 aggtacactt ttgagtaaag aaaaagaagt attgctcaat gaagaaataa gagcggatga
    36901 aatcagatgt gttggcgatg atggcaaagt ttatggtatt atcagtagtg atgaagcttt
    36961 agaaattgca aatcgtttag gacttgatct tgtaatgata gctgcagatg ctaagccacc
    37021 tgtttgcaag atcatggact atggtaaatt ccgttatcaa caagagaaaa aacaaaaaga
    37081 agcaaagaaa aaacaaaaag tgattgatat aaaagaaatc aaactttctg taaaaattgc
    37141 tcaaaatgat attaattaca aggtaaaaca tgctttagaa tttttagaac aaggtaagca
    37201 tgtgagattt cgtgtgttct taaaaggacg tgaaatggca actcctgaag caggtgtagc
    37261 tttgcttgaa aaaatttgga ctatgataga aaatgaagct aatcgtgaca aagagccaaa
    37321 ttttgaaggt cgttatgtaa atatgcttgt aactccaaaa aaagcttaat ccacttttgt
    37381 ggataaggct tttaaaggtt ttaaattttg aaagaaaatc cttctttttt aaaagagcaa
    37441 attataactt atcttggaaa taaaagagca cttttaagtt ttttaaataa tggctttaag
    37501 gtagctaaaa aagaacttgg taaagataaa tttagttttt gtgatatatt tagtggctca
    37561 ggtgttgtaa gtcgttttgc aaaagcacac tcaaattata ttttagccaa tgatttagaa
    37621 gattattcaa aactcatcaa tgagtgttat cttgctaata aagacaaaga tttacttcaa
    37681 aatataaaaa agtattataa aaatttaatc caaaatttag attttcaaaa aggttttatc
    37741 agtgagcttt atgctccaaa agatgatgat gatattaaaa aaaatgaaag ggttttttat
    37801 acttttaaaa atgctttata tcttgatact ataaggcaaa aaatcgaaaa tgaaattcca
    37861 aaagaattga ggcatttctt tatagctcct ttgatttatg aagccagtgt tcattcaaat
    37921 actagcggag tttttaaagg tttttataag ggtaaggatg gcatcggaaa atttggtggc
    37981 gaaggacaaa atgcacttaa acgcattaaa ggagaaatag agcttaaaat gcctattttt
    38041 tcaaattttt cttgtgaatt tgaagtgatg caaaaggatg caaacatact tgcaaaagaa
    38101 cttgattttt ttgatgtagt gtatcttgac cccccttata atcagcaccc ttatagttct
    38161 aattatttta tgctaaattt aattgcaaat tataaaaaac ctgaagaaat ttctaaaatc
    38221 agtggcattc caaaggattg gaaccgcagt acttttaata agtcaaaatt tgcccaagat
    38281 gctttatttg aacttattaa tgatttaaaa gcaagagtga ttttactttc ttataattgt
    38341 gaaggttttg taaaaaaaga aattttttta aagcgcttaa gcactcttgg aaaatgccgg
    38401 attttagagc aaaaatataa tacttttaga gcttctcgca atcttaaaaa tcgcaacatc
    38461 catcttcatg agcaacttta tattttagtt aaaaattagt ttttcgtgct aaaattgcac
    38521 ttaaaaatga ggagggattt atgaaactaa aattatcttt ttgtgcatta atggcatttg
    38581 gtttttctaa ctatcttttt gcttcagcta ttgatccaaa gttattttca agaatatctt
    38641 gattttgcca gtaataaagg caaatttcaa gtaggtcaaa ttggctttta aattttagca
    38701 aaaaatccta gtcaaaatat ctcttttaat gtgcctatga ttgatttttc tacttcaaat
    38761 cgtggaggaa aattccaagg agaatttacc aatataggac aatcttatat agtcagcgct
    38821 tctcatatga gtacaagttt aaatactggg aagtaaataa aggctatgtg aaacaaggta
    38881 gtgttttaca ctttggaggg gtagcaaata gaatcgtaag ctcaagtgat aattttactt
    38941 ataaaaaaga aaatgtggat tttgctgttt taaaaatgag taagattagt ctcaataaaa
    39001 gtgcaaattt gagtaaagat ttaaatctta ttgaaaaaaa ttctggcgat ggtggagata
    39061 tttatgaata caaggatcca ttttgggata gttgtcaaag tggaaaatgt gattattcaa
    39121 aaggtaaagg caagcttttt gatagttcgc gttatgagta ctttgcaaga gagggaagtg
    39181 gtattgtagc tttaggtttt gaagatacaa ataaagtacc cattaagatt tttgattcta
    39241 atgaaatcaa tttaggaggt tttgtcagtt taactcctaa aaatactgaa gataagcgtt
    39301 ttaagttgca atttcttaat tataccaatg ataaaagaaa ttcttttaca agttctttaa
    39361 tatcctggga ttctggaagt ggagtgttta tgataagatg gataaaaatg gtatttagtg
    39421 ggtgtggtaa gtacgagtaa ttgtaatgtc cattttacta tggatatact tgtttacagg
    39481 ttgattatgc tttgatcaat caagtaaaga tcaatgaatt ttaaaatgct cataaagtag
    39541 ccataggatc tggaacttat acacttagta gcgatggttt ggtgaaagat ggtaaaaaat
    39601 agaaaatgta agtttgattt ctaagactaa tgtgggttat gtaagctata aaaattcttt
    39661 tgatgataaa aataattgtg ataagagaat tgaagaaatg caaaatagca aggatttgta
    39721 tttttctcaa aatggaagta taaatttaaa tagcgatgtg gatttaggcg ctagtgtttt
    39781 aaatttgata aaaattcaaa ttggcaaata acaggcgata aatggcttat acatggcgga
    39841 atttatgctg ataagggttc aaggtagaat ataatgttaa aaccaaaaaa gatgattttc
    39901 tttataaaat gggtgaagga gagcttgttg tcaaaagtca aagtgtggat acaggactta
    39961 gaatgggtga ggaccaaggt aagtcttgag ggtgaaggtt gaagttttgg cgaaatttat
    40021 atgaatggtg gaactttgga tctatcgggc ttaacattaa aatttgatca aattaaagct
    40081 aactctaata atgtttttat cacaagctct aaagcagggg caaatttaaa tttagaaaac
    40141 aagcaaaatt atctttatca tggcaatatt tttcagatga ggccataaca attagtgcta
    40201 atacagataa agctttgatt tttgatggta atatttacaa taaagaaggt gtttttagga
    40261 cagaaaatgc caagttaaat tttcaaggac atgctagaat acacgcttat gtaagcaaag
    40321 aacaagctaa aaaacttcaa gaacatggtt taagtgcttt aactaagcct gtaagtttta
    40381 cacaagaaga ttgggaagat agggtttttg ttttaaaaga gcttaattta gaaaaaaagc
    40441 gagttttatt tagggcgtaa tgtaagctta aaagtagaaa accttaatgc taaaaattcc
    40501 aaaatagagc ttggaagtaa aaatttgtgg atcgatgaaa aagatgggga aaatattatt
    40561 gataagactg atgattattc ttatggagat gttgtataaa caggagttgg caaagaaatg
    40621 gcttttgagc aaaagcttta aaatacccaa aatgctaaga tagaaaaggt ttattttagt
    40681 gtaaatttaa atcttgatca ttctgatgtt actttgcaaa acacattttt tagtggtaat
    40741 atcaaaggta tcaatgatac gcaaaaaaaa atcttgcgat taaagattct ttgcttgagt
    40801 ctcatatata aatgagcaat cttcaagtag aaaaaagtgc tatttatagg aaagttgatg
    40861 caaaaaaatt aagtgcaaat aatacaatat ttaaaatcaa tgcggatttt gaaaattcta
    40921 aagcagatta tattaattct aaggaaagca cacaaggagt aaataatact ttagtattaa
    40981 tttttcttaa taatcctagt aaaaagcggg tttaaatatc ttactagctc atttaaaaga
    41041 tgaaaataaa catttaacaa aggaattttt tactatgcca aatgtgagca aggttttagt
    41101 acgtataccc caaatgttgt tttttctcat aatgaagaaa attttgccca gagtggaatt
    41161 tagaaaaaat tgattctaag attaaagatg aatatttttt tactaatgat aatactcaag
    41221 ctattgtaaa aactaaatct atacttgctc aagctatttt aggctccatg ataggagtgg
    41281 gataatatgc ataaaagaat gggggaatta cgcaataatc cttatgaaag tggtgtatgg
    41341 ttaagaactt ttggatgggg tacgagtgat gagtataata gtggaaaata ctttgaaatt
    41401 caaagcggac atgataaatt aaacgagtat tcgaatttcg agctttacag tggagtaagg
    41461 tttttatagt gattttgttt tagatatatt tattatcaaa atgaaataaa tgcaaatttt
    41521 attccaggaa atcaaggtag attagatgat aatgatggtt cgcataatat tatcttaagt
    41581 gctgagttag gttatagaaa agcttatgat aaattttatc ttgagccgag tttggaattt
    41641 atcagtggtt atgtaggagc tatggatcta aaaggagata ttgctagttt aaaacgattt
    41701 tcttatattc ctttagtcgt aaaaacagca tttttcatag gaagtcaaaa ttaaaattta
    41761 aattttagaa caggacttgg tttgtatgcg gatccgatta aagcaggaga tcaaatcttg
    41821 gaggatcaag caagtcagag aagatatgaa ggaaaaaaga tcaaagaatg tttataaatt
    41881 taggaaatga ttataagctt aacgataaaa cacgctttag ttttgaattt gaaaagacat
    41941 tttttggcga tttaaatgta gattggagtg caaatgctaa tttaagatat agtttttaaa
    42001 taaaaaataa tttaaaaatt gtatttttat tttaagcttt tttgtttata atacttgctt
    42061 ttacatttaa aggataaaga tgaaaataaa agttgggatt ttaggagcga gtggttatgc
    42121 gggaaatgaa cttgttcgca ttttgcttaa tcatcccaag gttgaaattt cttatttggg
    42181 ttcgagttct agcgtggggc aaaattatca agatctttat cctaacaccc ctttaaattt
    42241 atgttttgaa aataaaaatt tagatgaact tgaacttgat cttttgtttt tggctactcc
    42301 gcatgaattt agtgctaaac ttttaaatga gaatttatta aaaaagatga aaatcattga
    42361 tttaagtgcg gattttcgtc ttaaaaatcc taaagattat gagctttggt ataaattcac
    42421 tcatcctaat caagagcttt tgcaaaatgc ggtttatgga ctttgtgagc tttataaaga
    42481 agagataaaa aaagcaagtt tagtggcaaa tccaggttgt tataccactt gttctatctt
    42541 aagtctttat ccgcttttta aagaaaagat cattgatttt agctcagtta ttattgatgc
    42601 aaaaagtgga gtaagtggag caggaagaag tgcaaaggtg gaaaatcttt tttgtgaagt
    42661 taatgaaaat atcaaagctt ataatttagc tttgcatcgc catactcctg aaattgaaga
    42721 gcatttaagc tatgcagcca aaaagaaaat cattctacaa tttacccctc atcttgtgtc
    42781 tatgcaaaga ggaattttaa tcagtgctta tgcaaattta aaagaggatt tgcaagaaca
    42841 agatatacgc gatatttata caaaatacta tcaaaacaat aaattcataa ggcttttacc
    42901 gccgcagtcg cttccgcaga ctcggtgggt taaatcaagc aattttgcgg atataaattt
    42961 tagtgtagat caacgcacaa agcgtgttat tgtgcttggt gctattgata atttaatcaa
    43021 aggtgcagca ggacaagctg ttcaaaatat gaatttaatg tttgattttg atgaagatga
    43081 aggacttaaa ttctttgcaa atttgtaaag gataaaaatg ttaatacgag ctatgcaaaa
    43141 aagcgattat gaagccgttt ataagctttg gtgtgagata aaaggctttg ggataagaag
    43201 cattgatgat agcaaagaaa atatagaaaa ttttttagat agaaacccaa atcttagcgt
    43261 tgtagcagtg gttgatgaag aaattgtagg aagtatactt tgcgggcatg atggacgcat
    43321 aggaggattt tatcatgtat gtgtacataa agatcataga aaaaagggta tagcgcacga
    43381 gatgactaaa ttttgtcttg aggctttaaa agctcaaaag attaataaaa tcgccttaat
    43441 cgcttttaaa aacaatgatt taggcaatga gttttggaaa cattatggtt ttactttaag
    43501 agaggatgcg aattattacg atctttcttt aaatgagtat aatcaaacta gctttaatgc
    43561 ttaaggaatg atcatgcaaa aatatttaga aaaagctaat gtcttaatcg aagctttgcc
    43621 ttatatacgc aaatttaatt ctaagattat acttataaaa tacggcggat cagctatgga
    43681 aaatgaagag ctaaagcatt gtgtgatgca agatatagct cttttaaaac tcgtgggttt
    43741 aaagcctatt attgtacatg gtgggggaaa agatatttct gctatgtgtg aaaaattagg
    43801 cgtaaagagt gagtttaaaa acggtcttag ggttagtgat aaagtcacta ttgaagtagc
    43861 cagcatggtt ttaaatcata tcaataaaaa tttagtccat agtttgcaaa atttaggagt
    43921 taaagccata gggctttgtg gtaaagatgg cgcgctttta gaatgtgtga aaaaagatga
    43981 aaatttagct tttgttggca cgatacaaaa ggtaaattcg aaaattttag aagagctttt
    44041 agagaaagat tttttaccta tcattgctcc tattggcatg gatgaggatt ttaatactta
    44101 taatattaac gctgatgacg tagcttgtgc gatcgccaag gctttaaggg ctgaaaaact
    44161 tgctttttta accgatactg caggacttta tgaggatttt agtgataaaa attctttgat
    44221 ttctaaaatt agccttgaac aagctaaaat tttagctcct aaaatagaag gtggtatgca
    44281 tgtaaaatta aaatcttgca ttgatgcttg tgaaaatgga gtcaaaaagg tgcatatttt
    44341 agatggacgc gtgaagcatt ctttattgct tgagtttttt actgatgaag gtataggcac
    44401 tttggtgggt taaaggatga aaatggatta taaagaacaa agtcatattg tccctactta
    44461 taagcgtttt gatatagttt tagaaaaagg gcagggggtt tatctttttg atgataaggc
    44521 taaaaaatat cttgattttt caagtggtat aggtgtttgt gctttaggat ataatcatgc
    44581 taaatttaat gctaaaatca aagctcaagt ggataaactt ttacatacta gcaatttata
    44641 ttataatgaa aacatagctg ctgcagctaa aaatttagcc aaagctagtg ctttagagcg
    44701 tgtttttttt acaaattctg gtacagaaag tatagaagga gcgatgaaaa cagctagaaa
    44761 atacgctttt aacaaaggca ttaagagtgg acaatttatc gcttttaagc attcttttca
    44821 tgggcgtact ttaggggctt tatcgcttac tgctaatgaa aaatatcaaa agccttttaa
    44881 acctttaatt tcaggggtta aatttgcaaa atataatgat atttcaagcg ttgaaaaact
    44941 ggtgaatgaa aaaacttgtg ccattatctt agaaagcgtg caaggagaag gtgggataaa
    45001 tcctgcaaat aaagattttt acaaagcctt aagaaagctt tgcgatgaaa aagatatatt
    45061 attaatcgct gatgaaattc aatgtggtat gggtagaagt ggaaaatttt ttgcctatga
    45121 gcacgcacaa attttgcctg atatcatgac ttcagcgaag gccttgggtt gtgggcttag
    45181 tgtgggtgct tttgtaataa atcaaaaggt agcaagcaat tctttagaag cgggcgatca
    45241 tggtagcact tatgggggaa atcctttggt ttgtgcagga gtgaatacag tttttgaaat
    45301 ttttaaagaa gaaaaaattt tagaaaatgt caataaactc acgccttatt tagagcaaag
    45361 tttagatgag ttgatcaaag aatttgattt ttgtaaaaaa cgcaaaggtt tagggtttat
    45421 gcaagggctg agtcttgata aaagtgtaaa agtattcaag gtcattcaaa aatgccaaga
    45481 aaatgcactt ttactgataa gttgtggaga gaatgatttg agatttttac ctcctttaat
    45541 tttgcaaaaa gaacatattg atgaaatgag cgaaaagtta agaaaggctc taaagagttt
    45601 ttaataaatt ttgtaaaaaa gtttattctt ttccatctac tataggcaca aataaacatt
    45661 cttctaaaat ttctttttgt aaatttgtgc cattttttct aaggcgtgtg atgaattgtt
    45721 tgccattgtg taaaatagga gcgactaaaa tcccgtcatc gcttaattga tcgagtaaaa
    45781 tttcaggaat ttgtgtcgca taagcagaaa ataaaatcct atcataagga gcataatttt
    45841 tccagccatt ttgcccatca tcaaatttta cattgatatt aaaaagttct aattctctga
    45901 aagtttgagc ggcttttttg gctaaatttt ctatgcgttc tatggtaaaa acacgcctta
    45961 tgactttgct taaaatcgca gcttgatagc cacttccaca acctatctct aaaatactat
    46021 cagcattttt aaaatctaag gccatagtca ttttagctac agttaaaggt gaactaatcc
    46081 attgagaatt tgccaaaggc aaagcatcaa ggcgataagc atgggctttt aaaggagaaa
    46141 aaatttcacg cggaatttga caaaaagcat taaaaagttc ttcattgata aaaacttttt
    46201 gtgcaatttc ttcagccata ttttgacatc ttttttgttc aaatgcgttc attacttctc
    46261 ctataaattt aaataaaaat tgtaactaaa aaagttgaaa tagagttaaa cttagctata
    46321 cttaaataaa aaggaaaaaa atgcttataa aatttaaaaa tcatagtccc aaactaggtc
    46381 aaaatgtttt tgttgcagag ggcgctaaaa tcataggaga aatagaaata ggagatgaaa
    46441 gtggtatttg gtttaattgt gttttaagag ccgatgttaa ttttataaaa attggcaaaa
    46501 gaaccaatat tcaagatctt agcacggtgc atgtttggca tagggaattt gatgaaaaag
    46561 gaaagttaaa agacgctggt tttcctacga taataggaga tgatgtaacc ataggacata
    46621 attgcgttat ccatgcttgt gtgataaaaa atcgtgtttt aatcggaatg aatgctgtta
    46681 tcatggacaa tgctttgata gaagaagata gcatagtggg tgctggaagc gttgtaacaa
    46741 agggtaaaaa atttccgcca cgctctttga tacttggaaa tcctgcaaaa tttgtgcgtg
    46801 aattaaacga tgaagaaata agctttctaa aacaatccgc tttaaattat gtggatttta
    46861 aaaacgagtt tttaaaagat cttcagtgat attttgaagt ttaggtgaga gttttacttc
    46921 aaatttcaca aaacgatcaa gatctaaaaa actctcatcg agttttgaaa tttgctcttt
    46981 tgtataatct tgaatagtat ttaaagatga ctttttaaga agtctttttt ctttgtagac
    47041 taattctaaa agttctttgc gttctaaatt ttcatcttga tttgggtttt cgtcaaaaac
    47101 ataaagctca tcaaaaagga ttttttgcgt gtttttatca taaaccctaa aaagcttttt
    47161 aaaatgaggt agggttgatt tttcgttatt ttcgctgatt ttgattttag gttttatgcc
    47221 ttgatcttct aaggctgcga gtttataaac gcaactaaaa atagggtcac ttgaagcagt
    47281 gatcaatctt tcacctacac caaagatatc aataggtgca ttttgttctt tgagtttttt
    47341 aatactccat tcatcaaggg cgttagaaac tatgatttta catttttgaa gtcctgcttg
    47401 atcaagttct tgtctgattt tcaaactcaa cttaagtaaa tttccagaat ctattctcac
    47461 accgccttct tggataccaa attctttaaa aactttaatc gcatttttaa gtccgctatt
    47521 tagacaatca taagtatcaa tcaaaaaaac aggatttttt ggataaattt tcacataagc
    47581 tttaaaagct tcaagttcat tttcaaacat ttgcacccaa gaatgtgcca tagttccatt
    47641 gatagggata ttataaattt ttcctgctaa agtacaagca cttcctatgc aacctcctat
    47701 aaaagctgct cttgctcctt ttaaggctgc ttcacttcct tgtgctctgc gtgaaccaaa
    47761 ttctaaaatt ttactgtctt tagctgcacg cacgatacga ttggttttgg tagcaataag
    47821 gctttggtgg tttaaactta aaagtaaaaa agtttctaaa agctgtgctt ctatggttgt
    47881 agctttaata catagcaaag gttcgtttgg aaaaatcact tctccttcac gcatagcata
    47941 aatttcaccc ttaaatttaa agttagctaa aaaatctaaa aattctgtat caaaaatacc
    48001 ttgttttctt aaaaattcta tatcttctgc atcaaaactc aaattttcaa caaagtctaa
    48061 aatatcttca agacctgcaa aaatagcaaa agatcctgaa tctggaattt ttctaaaaaa
    48121 tatatcaaaa taacaaattt gatctttttt attgtttttg aaatagcctt gagacattgt
    48181 aaattcataa aaatcacaaa gcaaggctaa agaagtttta gaagtcatca aagcttatac
    48241 tacccttaga ataattcgtt actttacttt caaagaaatt gctcttttga tcgttaaatt
    48301 ttgaaaaatc atctacccat ttaataggat gttttgcatt gtataactta tctaaattga
    48361 tcgcgcttaa tctttgatct acaagataat ggatatattc ttctatgata tcatcagtaa
    48421 agcccatgat ttgattttga gtgatgtatt taccccattt gatctcaaga tctccagctt
    48481 ttttaaacat atcataaatt ttattgatat tttcatcatg gaacaaatca ggtctttctt
    48541 tgcgtactga attgatcata ttttgaaata ataaaagatg tgtgatttca tctctttgga
    48601 taaagcggat catttgtgct gaacctagca tttttcctgc acgtgcaagt gcgtaaatgg
    48661 cagtaaaacc actataaaaa tatactcctt ctaaaatttg atttgccacc atagccaaaa
    48721 gaagtttatt atcatctaca tcgcctgcta attcttcata aatgcttgaa ataaagtcat
    48781 ttttttcacg caaagtttca tcatgctttt ccatttcata aatcaaatct gtattatcgc
    48841 aaatcgcttc taccataaca gcgtaagatt ttgaatggtt tgcctcttca taagcttggc
    48901 gtgctaaaac tgcattgatt tcaggagctg tgatgtaagg gttgatattg tctgctaaat
    48961 tattggtttg aaaactatcc atagaaataa gctgactcca aaccaaatca tacattcttt
    49021 tttcacctgc agttaaatta cagcgataat caagtgcatc tttagttgta tccacttctt
    49081 ttggaaacca agtatttgcc tccattaaat cccaaagttt taaagcccaa gtatattttg
    49141 ccttagtaaa atttaaaatt ccatgtgggt taccatcaaa aactttacga tctcctaagg
    49201 tttcgtttga acttggattg taaattcttt ttctttgcat ttttaacctt tctttatgct
    49261 ttagtagcta tacaactttg agttaaaata tcgtgtaaat ttaaacgatc ttttcttaca
    49321 aaactgacaa ataaaccaaa gagtaagcca aaacttataa taaatatcac atatcttagt
    49381 aaaattctaa gaaaacttag tttctttccc gtttttatat caataagata taaatcatat
    49441 gctttaagac ctgggctttg tgcctttttt gttaaaaaaa tagcttgaat caaaccaaat
    49501 aaaaaagtac ataaagttgt gataaaatgg ttgtttaaaa aagattcttt agagcctaat
    49561 agaaaataaa ataaatacaa aataggaaca taaataagaa aaatatctat aagcaaagct
    49621 ctaaatctta gccatctaga gctaattttt gctttagttt tcatttaatt tccacggctt
    49681 cctggtttta tagctttact ccctttttta caaagtggac aatttgtttc atcataaatt
    49741 tcaaattcaa aatttcctag agtaaagagt ggtaaatttt caggtaattt cgcattatct
    49801 tttcttggag attttaaatt ttctactgca caaaaaccac gatttgccaa tgctgcaaaa
    49861 cctacaacaa tgccacctaa actttcaatg atttttgcac tctctaaagc actaccacct
    49921 gtagtaatga tatcttcaca aattataaat ttttcaccct ttttcacctc aaaaccacgt
    49981 cttaaagtca tttctttatt tactctttca gtgaagataa aacgtttact acaagctctc
    50041 gcaagctcat aacctgctaa aattccacct aaagcaggag aacaaatgct atcaaattct
    50101 atcttatagc ttgcaataat ctttgcaagt tcgtcacaaa gttttgctgc taattttgga
    50161 ttctctaaaa cttttgcact ttgaagataa aattgcgaat gtttacctga acttagtaaa
    50221 aaatggtctt ctaaataagc accacaatct ttataaattt gccctaaatt catcgttaaa
    50281 cctttaaaag ttcactttct ttacttttta cactctcatc aatttttatt gtgtaggcgt
    50341 cggtaagttt ttgcacttca tcataagctt tttttgcttc atcttcgctt attgccttat
    50401 ctttttctag ttttttaact gcatcgttgg catctttgcg tatatttctt atagaaactt
    50461 ttgccttttc acccatagct ttagcttgct ttacgttttc ttctctttgc tctctagtca
    50521 tcggagggaa aaataatttt acactttcgc cgtcattgtt tggatttaca ccgatatttg
    50581 cagctgcaat agcactttct atggttttta gtaaaggttt ttcccaagga gtgatgctaa
    50641 tagttgaagc atcgcttgct aaaacagttg ctacttgatt taaaggagtt tgagttccgt
    50701 aataatccac tgtaatatga tctaaaatat gggtattaac ttttccagtt cttaaagtgg
    50761 tgaagtcttt ttttaaggct tctaaagatt tttcactttg ggttttttgt ttgttaaaaa
    50821 tttcacttag cattatcatt tcctttaatt atttacttga attaacatcg cttggaagtt
    50881 gtgctgcact tggagcgata gaatttgtgt ttggggtagc aggcacaata ggagcgcttg
    50941 gaatagtagt gttgttgttt tctactttaa ttttctctgc tagtgagtcc ttgctagctt
    51001 tattgtataa ataaccaaga ccaatagtat ttgcaataag taaaattccc atgacaaagg
    51061 taaattttgc caaaaatcca gccggtcctt tggcaccaaa taaactttca ttgcttccac
    51121 tataagctcc aagtcctata cttgaacttt tttgaagtaa aactgctata caaataacta
    51181 caacgatgat aaattgtaaa atgattaaaa gagtgatcat tgaaaattcc taaaagttaa
    51241 tttttaaatg attattttaa ctaaataaaa cttgaaaagt tttgaaactt gaaaagtttt
    51301 tgtgagaaaa atcccacaaa aacttatctg ctattgaagc ttcttaagat attaagtaaa
    51361 gatacgaaaa gattaacaaa atcaagataa agtgctactg caccttcgat tggagtttca
    51421 taatttccgc ggataatatt ttgcgtatca taaagaatgt aaaatgaaaa taatattgca
    51481 gctactgctg aaatagctag attaactata ctgctttgga agaaaaggtt tagtaaagat
    51541 gctgctacaa taacgattaa tactataaat aaagctttgc ctataacagt aaaatctttt
    51601 tttgtattca tagcaaatac gctaagtcct gcaaaagcaa ctgttgttaa agcaaaagct
    51661 tgagcgatga taattcctcc agctggtaga gctaaaactg aaataagcaa aggtgtaagt
    51721 gttaaacctg agcagaaagt aaaaccaaaa agtaaaacaa gatttaatgg agcttctctt
    51781 tttttccatt gcaaagcaaa taaaagtccg atttcaacag caaaaaggat ccaaaaagtt
    51841 acttgtgatt gtataaaaaa tgatgctaaa gcaaaaattc ctacatacgc acctactgtt
    51901 gcagctaata atgaagcagc aaaaagttga taagtttgtt taataaaaat acttaattcg
    51961 cttgagcgtg tattttcaaa ttcttttgat cttgagtagt ctctatcata aagactcata
    52021 aaattctcct tgcaaaattg ttagattttt taaaatcttg agcgaaatct aacatattag
    52081 actaaataaa aagttaattt atataatatc tttatgatta aatgaaatct ttgctgaaat
    52141 tttgttataa ttttaagatt ttagtttcag gttggtttta tggaaaatct tattagtggt
    52201 gcgattaagt ttatgcaaga agactttaag gagcatgaag aactttttga aagtctaaaa
    52261 aataagcaaa atccccatac tctttttata ggttgttctg attctagagt aattccaaat
    52321 ttgatcacca atacgggtcc aggtgagctt tttgtaatac gaaatattgc aaatatagtt
    52381 ccaccttatc gcattgggga agattactta gcgacaactt cagcaataga gtatgcttta
    52441 aattcattgc atattaaaaa tatcgtcgtt tgtggccata gtaattgtgg aggttgcaat
    52501 gctctttatt attctgatga agagttaaat aaaattccta atgtgaaaaa atggcttact
    52561 atgttagatc cgataaaaaa agatgtaatg atttttgcaa gagacgattt ggctatgcgt
    52621 tcatggctta cagaaaaatt aaatttagta aattctttgc aaaatatact tacttatcca
    52681 ggcgtgcaag aagctttaga tgaaggaaaa atagaagtac atgcttggta ttatattata
    52741 gagacaggtg aaatttatga gtatgatttt aaagcaaaaa tttttacttt aatacaggat
    52801 aggaaagttc aatgaagaaa attattttta gtttatgttt ttttatttta taccttggag
    52861 cacaagaatt taaatttatt gatgcgaata ttagtaaaga ggatgaagga atttatgctt
    52921 tagttgaaaa atatgttgat cttaacaatc aaattaaaga atttaagaaa aacaatgatg
    52981 aaaattcaag cacttttaat ggtattttaa gtgaatttga aaaagacaaa aagactattt
    53041 tagcaaaaat acccgatatg atagtaggac aaaagattaa tgaagaggca gtggctagat
    53101 ttttaaaagc aaaagaaaaa ttactagatg ttcaaaaaaa gaatattaat aagccttata
    53161 tttatacaga tgccactctt aatctagttt attttaatat tgtggaaagt ttttattctt
    53221 ctttgtttga agtggaaaaa ctttttaaaa atacagcaag cagtgaagat ttgattgcta
    53281 ctgttgataa ggcaatggaa aatttacaaa attcttctaa tgttaattta gatagtttta
    53341 aaagcaaaat tacaaattca gaagaattag aaaaaattac cctaaaagaa agatatatca
    53401 gtaatgctgt agattcttat tctgaaattc ttaagtattt acgctcaaat gcagatttgc
    53461 ttgaaagtaa ttatattttt tcattactcg agcttcaagt ttggatagat cgtataaatg
    53521 aggcaattgg ggtaagtttt gttaatatcg gaaaaatagt aatttctgct ctggttttag
    53581 tattttttat atctttaaga cgtttttttg caaatatagt atattttttc cttgttcagt
    53641 ttttttatag aaataaaaat gatgtagatg atattaaagt catttttatt gagaatatta
    53701 aaaaacccgt aggcttcttg ttgattgtct atgctatttc tctttgtctt actatagcaa
    53761 cttatcctgc acctttgagt gtaaatttaa gtaatttttt tcatatagtt tatgcagttt
    53821 taattgcatg gcttatttta agaatgcttg atggttatgg cgtggtattg gtttctaaac
    53881 ttgctcaaaa aagtggaaaa aaagaagttg taaatttaat tattaaaatt ttatattttg
    53941 tcattattat tatagcctta ttatatattc ttgctcaact tggttttaat atttcggcta
    54001 ttattgcatc tttgggaatt ggtggtttag ctgttgcttt agcggcgaaa gatatcattg
    54061 caaatttctt tgcttctata ctcttacttt ttgataatag ctttaatcaa ggagattggg
    54121 tagaggtttc aggcatagaa ggaaccgtgg ttgaaacagg acttagaaaa actactatta
    54181 gaacttttga taattgtctt gtatttttac caaattcaac tattatggga gctaatatca
    54241 aaaattggag caaaagacgc atgggtcgcc atgttagaat gtatttgggt gttggttatg
    54301 atgctactcc tgaaaaacta gaacaatgtg taaaagatct aagagaattt ttgcatacaa
    54361 gtgatttagt agctcacgat gaggatagcg cattaaaata tggcgatcat acaacaaaat
    54421 atcgtcaaaa tcttgtatct attaatgatt tagaaggcta taaaaatgct tgttatgtgg
    54481 ctttaagtga atttgcagat agtagtatta atatagagct ttatttttat atcaaagaaa
    54541 taggtggaaa agattttaga gaagctagac aaagtttaat gcttgagttt atgcgtataa
    54601 ttgaaaaaaa tggtttaacc tttgctttcc caagtcgtag tatttatata gaaaatttac
    54661 caccccttga tttgcaagca aaagctataa aatagcaaga ttttatcttg ctatttttta
    54721 aaccggcata acgcgtatat ttggacttaa ttcttcttgt aaaattgttt caatagcata
    54781 aagtgttgca ccacttccac tagaacaacc actacaagca ccaagataac gaatataaac
    54841 atcaattgct gcaccttcag ccttttgtat atcaatcact tccaaatctc caccatcatt
    54901 atgaagcata gggcgaattt cagcatctaa aacactttca actgctttta attgtcccac
    54961 tacggtcatt tcatcaaaag ctacatcact tttcattgta tttttgagtt tttctctatc
    55021 tatttcagct ctagtttcag ctaaaatatc tacaaggtaa taatctcttt tttcatgtcc
    55081 gcctggtttg atacaggatt tacaaaaagc acccgcttta gtgtattgtg tgatttcttc
    55141 tacgctatgc aaatcattaa gtttaatcac ttctttaata gttccaagac ttaccctagc
    55201 gcactcgcaa actataattt gatcttcaaa atcttcagga cttatgcctt tataatgcgc
    55261 tgctgcttgt ttgattacat cataagccat aaccgaacag tgcatttttt gaggtggaac
    55321 agctggagtt tctggattat cacgcatagc aaattccaca tctaaatttg tgatttttac
    55381 tgcttcatct acagtttttc ctatacaaag atccaccata gtatcactac ttgctatagc
    55441 tgtaccacaa ccaaaacttt taaattttgc atcgataatt ttatcagttt tttcatctac
    55501 aagccaaaaa agtcttaccg catcgccgca actttctgcg ccaaaatcag ctacgatcaa
    55561 ttttgcattg cgtgctttag catcttcttc actaaattct cccatatgtt gaggattatt
    55621 cattctatct tgaacttttt gtgaatactc atcccaaatg gatccaccaa ttaaactatt
    55681 ttttcccatt tttcatcctt atttgtaatt atttggatta taagcataag tacaagaaat
    55741 tgctcttaat ctctgtgttg catttttaat ttgttttgct gcataatcaa tttcttcttc
    55801 agtgttaaaa cgtgacaaag aaagccttaa agctgtatgc gctaaatcat gctccgcacc
    55861 gatagcttcc ataataggat tgctttctaa agcttcactt gcacaggctg agcccgtact
    55921 tgcagctata ccatttttat ttaaatccca aagcattgct tcgccttcaa ctcctttaat
    55981 acttgctaag attgtattag gcacacggtg ttctcttttt ccaaccactg ttgtatcagg
    56041 caaggctaaa atttgatctt ctagtttatc tcttaaacgg cgtatatgag aatcttcaaa
    56101 atcaagcata gtatttgcaa tacgcaaagc ctcgcccata gccactatat aaggtacatt
    56161 taaagtcccg cttctacgac cacccatgtg ttctccaccg tgtaaaagtg gagtaagctt
    56221 aagtcctttt tttataaaaa gtccacccac accctttggt ccatgaaatt tatgtgccga
    56281 aaatgaagca aaatcaactc ctacttgagt taaattaacc tttattttac ctactgcttg
    56341 agtagcatct gtatgaaaaa gagcaccaaa ttcatgtgca agttctgcca tcgctttaat
    56401 atcaaaaatc atacctgttt cattatttgc ccacataaca cttacaagtg ctgttttatc
    56461 gctaatcact ttacgcaaat cttctacagt agaaacccct tcttcgttta caggaagttc
    56521 tataactttt actccaagac tttttaaaaa ataagcagca gcagtaacag cagggtgttc
    56581 tacactagaa ataatcactt cattgcgttc tttatctaaa atatgatcaa aatacacacc
    56641 cttaagcacc cagttaatgc tttctgtcgc acaggaggtt acaactatat catctaagtc
    56701 atttgctcca agccccgtat aaagtttatc caaagcttct cttaaggcag gatgtgttgc
    56761 gcttccatat tgatgaaggc tatttggatt tccatacata tcctttaaaa aaggtagcat
    56821 caactcataa gcattaggat caagcattgt cgttgcgttg ttatctaaat atactttcac
    56881 tttaaaatcc ttaatttatc cttaatttta attaggatat tttttatctt tatttgaaaa
    56941 tggataataa caaaaattta taaaaattag gttaaaaatt ataacaaaaa taaaatgcta
    57001 aagtaaaatt ttaaagtgaa atattttgtg aattttatat agcaaaaatg agaaatacta
    57061 tttcttaaat ttttcttcgt aatactttac tatctttgaa tcttctttgg ctgtatgttt
    57121 aaagataaaa tcttgaacaa cgagatttaa tttttcggtc attatattta caaatttagc
    57181 ttcactgatg ataatttctt caatttctaa gataattttt ctatgaattc ttgtatgatg
    57241 gttgatataa ggatatccta tttctctcat aaaggcttct tcatctgaaa aatgtctatt
    57301 gatcattatc aacaactctc ttaagacaat ttttaattct tttgttccaa catgacgttg
    57361 gttcattaaa gagagttttt tagaaatttc aaaaagttct ttatgttgat gatctaaaag
    57421 atcattattc attgaaataa ttttttcatt ataagtcatg gttttgagta tttttatatt
    57481 tatatttttc gagagc
//
LOCUS       DAPIWU010000002        43112 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.002, whole genome shotgun sequence.
ACCESSION   DAPIWU010000002 DAPIWU010000000
VERSION     DAPIWU010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 43112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43112
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.002"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..633
                     /locus_tag="RJ285_000054"
     CDS             <1..633
                     /locus_tag="RJ285_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDV7382884.1"
                     /translation="QEKKYIKCDLKNKSYYLDFKIIELGCNIKNENNIFEIIKKHMKN
                     IRNLTNQTCQMGILKDGNVLYLEKIDANNTVQLKSFIGTSYPAYATSLGKALLSNKNK
                     KELEKLYPKNFDKITENTLNNINELYQQIKQIKKEKIAIEIGEMNPQIECMAIGIEHK
                     NKIIAAISISYLIYCSNKAFREKNKKILLEEKNKIEKVLKIYFNDLDTLY"
     gene            complement(664..5217)
                     /gene="rpoC"
                     /locus_tag="RJ285_000055"
     CDS             complement(664..5217)
                     /gene="rpoC"
                     /locus_tag="RJ285_000055"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDV7382885.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(5210..9346)
                     /gene="rpoB"
                     /locus_tag="RJ285_000056"
     CDS             complement(5210..9346)
                     /gene="rpoB"
                     /locus_tag="RJ285_000056"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDV7382886.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(9455..9832)
                     /gene="rplL"
                     /locus_tag="RJ285_000057"
     CDS             complement(9455..9832)
                     /gene="rplL"
                     /locus_tag="RJ285_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDV7382887.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMIAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(9853..10332)
                     /locus_tag="RJ285_000058"
     CDS             complement(9853..10332)
                     /locus_tag="RJ285_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDV7382888.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLGVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(10484..11185)
                     /locus_tag="RJ285_000059"
     CDS             complement(10484..11185)
                     /locus_tag="RJ285_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDV7382889.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(11240..11665)
                     /gene="rplK"
                     /locus_tag="RJ285_000060"
     CDS             complement(11240..11665)
                     /gene="rplK"
                     /locus_tag="RJ285_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDV7382890.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11691..12224)
                     /gene="nusG"
                     /locus_tag="RJ285_000061"
     CDS             complement(11691..12224)
                     /gene="nusG"
                     /locus_tag="RJ285_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDV7382891.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(12234..12413)
                     /gene="secE"
                     /locus_tag="RJ285_000062"
     CDS             complement(12234..12413)
                     /gene="secE"
                     /locus_tag="RJ285_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDV7382892.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVVVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(12432..12507)
                     /locus_tag="RJ285_000063"
     tRNA            complement(12432..12507)
                     /locus_tag="RJ285_000063"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12472..12474),aa:Trp,seq:cca)
     gene            complement(12520..12678)
                     /gene="rpmG"
                     /locus_tag="RJ285_000064"
     CDS             complement(12520..12678)
                     /gene="rpmG"
                     /locus_tag="RJ285_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDV7382893.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(12731..13930)
                     /gene="tuf"
                     /locus_tag="RJ285_000065"
     CDS             complement(12731..13930)
                     /gene="tuf"
                     /locus_tag="RJ285_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDV7382894.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(13999..14073)
                     /locus_tag="RJ285_000066"
     tRNA            complement(13999..14073)
                     /locus_tag="RJ285_000066"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14039..14041),aa:Thr,seq:ggt)
     gene            complement(14178..14254)
                     /locus_tag="RJ285_000067"
     tRNA            complement(14178..14254)
                     /locus_tag="RJ285_000067"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14218..14220),aa:Gly,seq:tcc)
     gene            complement(14261..14346)
                     /locus_tag="RJ285_000068"
     tRNA            complement(14261..14346)
                     /locus_tag="RJ285_000068"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14310..14312),aa:Tyr,seq:gta)
     gene            complement(14396..14471)
                     /locus_tag="RJ285_000069"
     tRNA            complement(14396..14471)
                     /locus_tag="RJ285_000069"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14436..14438),aa:Thr,seq:tgt)
     gene            complement(14587..15324)
                     /locus_tag="RJ285_000070"
     CDS             complement(14587..15324)
                     /locus_tag="RJ285_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7382895.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKDKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLQEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHK"
     gene            complement(15326..15982)
                     /locus_tag="RJ285_000071"
     CDS             complement(15326..15982)
                     /locus_tag="RJ285_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7382896.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISTIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWFFVVYFGFPRWFGWDLSSVSVAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(15975..16676)
                     /locus_tag="RJ285_000072"
     CDS             complement(15975..16676)
                     /locus_tag="RJ285_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7382897.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLNLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLYA"
     gene            complement(16691..17287)
                     /gene="nssR"
                     /locus_tag="RJ285_000073"
     CDS             complement(16691..17287)
                     /gene="nssR"
                     /locus_tag="RJ285_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HDV7382898.1"
                     /translation="MKDYLELLSSVGKLKKFQKNSILFYEGEEAKKFFILLKGKIRIY
                     KSTSSDKEITLHYFNPPNFIAEMPAFKKLNYPANAIFEEDGEILEIDFINFQNLCSEN
                     KEFNFLLISSLFDKIKILEKKLSQNALDLRTRLLKYLLENEKKLDTISQKQIAIDLNV
                     RAQSLSRVLKELKISELIDTKKGKIEILNKDMIIKELW"
     gene            17383..17766
                     /gene="ctb"
                     /locus_tag="RJ285_000074"
     CDS             17383..17766
                     /gene="ctb"
                     /locus_tag="RJ285_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HDV7382899.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
     gene            complement(17763..19586)
                     /gene="recG"
                     /locus_tag="RJ285_000075"
     CDS             complement(17763..19586)
                     /gene="recG"
                     /locus_tag="RJ285_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDV7382900.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKELIFNAKLS
                     HFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASDKIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSACYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKLPN"
     gene            complement(19576..20796)
                     /locus_tag="RJ285_000076"
     CDS             complement(19576..20796)
                     /locus_tag="RJ285_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDV7382901.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELGK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNISFASIQNEN"
     gene            complement(20796..21842)
                     /locus_tag="RJ285_000077"
     CDS             complement(20796..21842)
                     /locus_tag="RJ285_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HDV7382902.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALVRLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            21916..23103
                     /locus_tag="RJ285_000078"
     CDS             21916..23103
                     /locus_tag="RJ285_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7382903.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            complement(23119..24207)
                     /gene="nusA"
                     /locus_tag="RJ285_000079"
     CDS             complement(23119..24207)
                     /gene="nusA"
                     /locus_tag="RJ285_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDV7382904.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            24335..24577
                     /locus_tag="RJ285_000080"
     CDS             24335..24577
                     /locus_tag="RJ285_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382905.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            24574..25875
                     /gene="miaB"
                     /locus_tag="RJ285_000081"
     CDS             24574..25875
                     /gene="miaB"
                     /locus_tag="RJ285_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDV7382906.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            25859..26488
                     /locus_tag="RJ285_000082"
     CDS             25859..26488
                     /locus_tag="RJ285_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HDV7382907.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            26490..27449
                     /locus_tag="RJ285_000083"
     CDS             26490..27449
                     /locus_tag="RJ285_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HDV7382908.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNIQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNNDTEVTLDNFNEALNNKF
                     DLLDQENNLETLNNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            27446..27973
                     /locus_tag="RJ285_000084"
     CDS             27446..27973
                     /locus_tag="RJ285_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382909.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDNEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            27963..28481
                     /locus_tag="RJ285_000085"
     CDS             27963..28481
                     /locus_tag="RJ285_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382910.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKLKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(28473..29765)
                     /gene="thiC"
                     /locus_tag="RJ285_000086"
     CDS             complement(28473..29765)
                     /gene="thiC"
                     /locus_tag="RJ285_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HDV7382911.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQINAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVIDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     regulatory      complement(29822..29926)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(29947..30708)
                     /locus_tag="RJ285_000087"
     CDS             complement(29947..30708)
                     /locus_tag="RJ285_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDV7382912.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPKNITELTGITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     gene            complement(30705..31352)
                     /gene="rpe"
                     /locus_tag="RJ285_000088"
     CDS             complement(30705..31352)
                     /gene="rpe"
                     /locus_tag="RJ285_000088"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDV7382913.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            31492..31686
                     /locus_tag="RJ285_000089"
     CDS             31492..31686
                     /locus_tag="RJ285_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDV7382914.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            31871..32086
                     /locus_tag="RJ285_000090"
     CDS             31871..32086
                     /locus_tag="RJ285_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDV7382915.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            32096..33193
                     /locus_tag="RJ285_000091"
     CDS             32096..33193
                     /locus_tag="RJ285_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HDV7382916.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(33225..33821)
                     /locus_tag="RJ285_000092"
     CDS             complement(33225..33821)
                     /locus_tag="RJ285_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDV7382917.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(33904..35967)
                     /locus_tag="RJ285_000093"
     CDS             complement(33904..35967)
                     /locus_tag="RJ285_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7382918.1"
                     /translation="MKNIKFKKSLLCFLILSGALLKAEEKYQLNDVVVSASGFEQDLV
                     DAPASISIITKEELEKKPIKDIGEAIGDIPGVDVTMNKTGTYDFSIRGFGSSYTLVLI
                     DGKRQSVANGFYDNGFSGSESGYLPPLSMIERIEVIRGPASTLYGSDAVGGVINIITK
                     KNPDKIEANIEFNTLLQQHSNHYGNAGGFNAYVATPLIEDTLSISARLKYYDKAASDL
                     KWPTPVWNNNNQRPDNYQIASHSPGAFTSLGFGSRLNWTVDDKNNIYFDIERYINEIS
                     VNSTSSRAIKSERQLFKDNIVLNHDGNYDFGSTNSYLQYGSTKDKELHSQIWVGEGKV
                     VLPWNLGQYGNLVNTFGARIDYEILKNDQASAGSQIRGKNLDQTTVALYGENEYFITD
                     DLIFTTGLRYIYSDLFDSEFTPRVYLVYHLNDNIALKGGVSKGYKTPAAKQLTNGYYN
                     YANNNAYFGNPDLKPEESINYELGVDFMVFDFAHYSITGFITDFTNQISSEDLTGMQN
                     DINCSNGIVCKRPINLGKTQTKGIEFAFNTKTYNGFSLNSSYTFMDNRYKDGQKNWFG
                     GDRIENLPRHIAMLKLNYERGKFSSYIKTRARLDTIAKAKGGGNGSLPWQKYKPFYIV
                     DLGINYKINKQSSLSFAVQNLFDKNFFDPQVTRWDGANPAGYANRYQDYIEGRSFWLS
                     YKYDF"
     gene            complement(36110..37048)
                     /locus_tag="RJ285_000094"
     CDS             complement(36110..37048)
                     /locus_tag="RJ285_000094"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HDV7382919.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEATAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(37050..38264)
                     /locus_tag="RJ285_000095"
     CDS             complement(37050..38264)
                     /locus_tag="RJ285_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HDV7382920.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAIQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVVGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(38291..38524)
                     /gene="acpP"
                     /locus_tag="RJ285_000096"
     CDS             complement(38291..38524)
                     /gene="acpP"
                     /locus_tag="RJ285_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7382921.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            38634..39302
                     /gene="tenA"
                     /locus_tag="RJ285_000097"
     CDS             38634..39302
                     /gene="tenA"
                     /locus_tag="RJ285_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HDV7382922.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVGAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(39326..40183)
                     /locus_tag="RJ285_000098"
     CDS             complement(39326..40183)
                     /locus_tag="RJ285_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HDV7382923.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     IFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(40187..41152)
                     /locus_tag="RJ285_000099"
     CDS             complement(40187..41152)
                     /locus_tag="RJ285_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDV7382924.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            complement(41149..42984)
                     /locus_tag="RJ285_000100"
     CDS             complement(41149..42984)
                     /locus_tag="RJ285_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDV7382925.1"
                     /translation="MGEFSRRDFIKTACISVGALVASSSGVYALDDSSKMDKDANLPS
                     CDVLIIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGVKTHELAQKWQVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKKLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
BASE COUNT        14396 a         8089 c         5692 g        14935 t
ORIGIN      
        1 caagaaaaaa aatatatcaa atgtgattta aaaaataaaa gttattattt ggattttaag
       61 attatagaat taggatgtaa tataaaaaat gaaaataata tttttgaaat aatcaaaaag
      121 catatgaaaa atataagaaa tttaaccaat caaacttgtc aaatgggaat tttaaaagat
      181 ggaaatgtgc tttatttaga aaaaattgat gctaataata cagtacaatt aaaatctttt
      241 ataggcactt cgtatcctgc ttatgcaaca tctttaggca aagccttact atcaaataaa
      301 aataaaaagg aattagaaaa actttatcct aaaaattttg ataaaattac agaaaacacc
      361 ttaaataata taaatgaact ctatcaacaa atcaaacaaa ttaaaaaaga aaaaattgcc
      421 atagaaattg gagaaatgaa tcctcaaatt gaatgtatgg ctataggcat agaacataaa
      481 aataaaataa ttgctgccat tagtatatct tatctaattt attgctctaa taaagctttt
      541 agagaaaaaa ataaaaaaat acttctagaa gaaaaaaata aaatagaaaa agttttaaaa
      601 atttatttta atgatttaga tacactgtat taatatagcc ccgaagggct ataaaataga
      661 gttttattct tgttctttaa gttttaaatt ttgttcgcca taaagccctg ttccaacagg
      721 aatcattcta cctagaataa cattttcttt taaatcttct aagtagtcaa atttacctgc
      781 tatacttgct tcagttaaaa ctttggtagt ttcttggaat gaagccgcag aaatcacact
      841 atcacttcca atcgctgctc ttgttacacc taaaagcaca ggctcggcaa tagctggttc
      901 tccacccatt ctaatgattc tttcattttc ttcacggaat ttacgtcttg aaaccaaatc
      961 accttcaata aatttcgtat gtccactatc tacaactttt acttgtctta gcatttgaga
     1021 aacgataact tctatatgtt tatcagaaat cacaacacct tgtccgcgat aaacttgctg
     1081 aatttcagaa atcaaataat aatgcaaggc tttttcacct aaaattttaa gcacatcatg
     1141 actcgaaaca actccatctg taagtttttc acctgcatga ataaactctc catctcttac
     1201 ttgaatatgt tttgatttgt cgattaaata ctcagcactt gttccatctt ctgcttggat
     1261 aataattctt tctttagaac gcaaaggctt atcaaaacga acaacaccat caatttctgc
     1321 aatcacagcc gcattttttg gttttcttgc ttcaaaaagt tcagaaactc ttggaagacc
     1381 tcctgtaata tcctttgatt tagctgctgc ttttggagtt tttgctaaaa tatctgcttg
     1441 agcaatttta tcgccatcat gaacaaaaat aacggttttt ggttcaaggt gataacgcac
     1501 agctttatca ccttttcctg caattaccaa agttggtcta actccgctag gtaaatactc
     1561 attaattact aaagaacgct tacctgtagc ttcatcaatt tgctcatcag cactataacc
     1621 tgcttcaata tcctcaaagc ttacaacacc atcaatttct gcaatgatag tattattata
     1681 agcatcccat tctgcaatca cttttctttc ttttttagga gcacttgcaa tgatagtatt
     1741 tgcgtcatcg attttttcac tatcgttaaa ttctatctta gattctcttg ggatatagtg
     1801 tctttttgct tctctatcat tttcatcagc aatcactaca aagaatcctt tttctttaac
     1861 aatatcacct tttttaacat tttttactct atctaaacca tcgcctttaa ggatgtaaaa
     1921 tttgagtgtt cctttttcgc ctgctttgat attttgaact acaggctcgc catcttctac
     1981 taaaatttca ctcgcaaaag gaatacgatt tggtacattc caaccctctt taatcacttc
     2041 tacgatactt tcattttctt ctacttgcat gccgctttga tatggcaaat aaagttttcc
     2101 atctatactg ccacttacac ctgctaattc atttggttta gcaagatcgt attttcttaa
     2161 tatgtatttt acttcttgtt ttttatcttt aatagaaaca atcacatctt catgaatatt
     2221 ttctatatta atcacacctt taaatggagt tttgattttt ggctccacaa gtaaaaccgc
     2281 cgcatttcta cgatttgcta cgatattttt accttctttg tttttataag ttttaagatt
     2341 ataaaatctt ataaaacctt ctttttgtgc gcttacttgt ctatcttgta aatccgtact
     2401 tgcagttccc ccgctatgga aagttcttag agttagctgc gttcctggtt caccgataga
     2461 ttgagcggaa ataattccca ctgcttcgcc tggttttact aatttacctt caccaagatt
     2521 gataccataa cattttgcac aaattccttt tttagctttg caggtaatag gagtgcggat
     2581 attgacactt tttataccgc tttcgccaag aatttttgct ttttcctcat ccattaaagt
     2641 accttctgca aaaagcacag aatttgtaat aggatcaatc acatcctcag ctaaaaccct
     2701 gcctaaaatt ctttcttcta aagtttctat aatagaacta tctgcggtaa tttcattgat
     2761 ttcaacaccc tcatgtgttc cacaatcttc aatggtaatt tttacatttt gtgcaacatc
     2821 gatgagtttt cttgtcaaat aacccgcatt tgctgtttta agagcggtat ctgcaagacc
     2881 ttttctagca ccgtgagttg aaataaagta ttcaagaaca tttagccctt cacggaaatt
     2941 tgaaataata ggcgtttcga taatagaacc atcaggtttg gtcataagtc ctctcatcgc
     3001 agcaagctga gaaatttgag ctgcactacc cctagcacca gaatctgcca tcatataaat
     3061 agagttaaaa ccttctttat ctttttctac aagcttcatc atttcttttg aaagaacatt
     3121 gtttgtactt ttccaaatat caatgatttt attgtatctt tcccctgaag taatcaaacc
     3181 gagattataa gaattttgaa tttctcttac ttgttttttt gcttcatcga tagctttttg
     3241 tttatcatta ggaacaataa tatctgcaat cgaaattgaa atacctgctt tagttgcata
     3301 ttcaaaacct aaatttttaa gtctatccaa gaaacttgct gtaatctcta aaccaccttg
     3361 tttataaaca taatccacaa gcgcagcaat gtcttttttc tttaagactt tattccaact
     3421 attttcaggc acaaaatcag gcaagatgga tttaacaatc aatcttcctg ctgtagtggt
     3481 aatctttcta ccatctacca tagtttgtat gctcgcatga atatccaaac acttgctttc
     3541 aagtgccatc atcacttcat caatgcctgt acaaatttta tgcgaacctt tagcacctgc
     3601 tttttccaac gaaagataat aaattcctaa aaccatatct tgcgatggaa cggttacaga
     3661 cttaccgctt gctggtaaaa gaatattcat tgatgaaagc ataagcactt tacattctgc
     3721 aatagcctct tgagaaagcg gtacatgcac tgccatttga tccccatcaa agtctgcgtt
     3781 aaatgctgca caaaccaaag gatgaagttg tatagcctta ccttccacta aaacaggatg
     3841 aaaagcttgg atagaaagct tatgcaaagt aggtgcacgg tttagcataa caggatgtcc
     3901 ctttactacc tcttctaaac attcccaaac ttcattggtt ttattttcta tcattttttt
     3961 agcttgtttt actgtggttg cataaccttt ttcttcaagc ttagctaaaa gatgtggctt
     4021 aaaaagctct aaagccattt ttttaggtaa accgcattga tccattctaa gttttggacc
     4081 tacaacaata acgctacgac ctgagaaatc caccctttta cctagtagat tttgtctaaa
     4141 acgtccttgt ttccctttga tgatttcact taaagatttc aatgggcgtt tatttgctcc
     4201 ttttacagca ttagcacgac gaccgttgtc aaaaagcgca tcaacagcct cttgaagcat
     4261 tcttttttca tttctgataa tgatttcagg tgcatcaagt tccataagtt ttttaagacg
     4321 tgtatttcta ttgataacac gacgatataa gtcattcaca tcagaaactg caaatttccc
     4381 accatctaaa gccactaaag gacgcaaatc tggcggtaaa actggaagat ttgtaatcat
     4441 catccattca ggacgatttg gtacagcttc gtcgctatcg gtattggcgt ttaaatttga
     4501 atttaagaaa ttttctacaa cttttaagcg tttaatgata gtttttttct tagcctctga
     4561 atttgtagcc cccatttctt ctttaagttg atttaaaagc gctacaagat ctaaatttgc
     4621 aagtaaatca cgaacaactt ctccacccat tcttgcttta aagccgctat tttcatagcg
     4681 ttgcattaaa ttttgatatt gctcttcgtt caaaacatcg caatattcca cttttttagt
     4741 actttcatta tcatagaaag catcacctgg gttttcaaca atataagctt cataataaag
     4801 cacgcgctca agatctttca tcttaacacc caaaagcgtt cctatacggc ttggaagaga
     4861 attaacatac caaatatgag ccacaggagt tacaagctcg atatgcccca ttctagaacg
     4921 acgcactttt gaatttgcta cttcaacacc acatttttca cacttaacgc ctttaaaacg
     4981 catttttttg tatttaccgc aaagacactc ataatctctt ataggtccaa aaatctttgc
     5041 acaaaaaagc ccatctcttt caggctttaa ggttctataa ttaatagttt ctggtttttt
     5101 tacttctcca taagaccatg atttgatttt ttcaggactt gcaagtctca gttgaaatgc
     5161 ttcaaaatct ctaggtcttg catcttcttt aatttctatt actttaaatt tactcattat
     5221 cttcatcctt atcaaaaatc tcaacatcta aagcaagaga tttaagctca ttggttaata
     5281 caaaaaatgt ttcaggaatt cctgttgctg gaacattttc accttttgtc aatgctttat
     5341 aagcactaaa tctaccttct acatcatctg attttatggt taacatttct cttaaagtgt
     5401 gagccgctcc ataagcttca agtgcccaaa cttccatttc tccaaatctt tgtcccccaa
     5461 agagtgcttt accacccaca ggttgttggg taaccaagct ataaggtcct gtacttcttg
     5521 catgaacttt ttcatcaacc aagtgatgga gttttagcat atacatacat cctacatgaa
     5581 cacgctctgc aattttttcc cctgttcgtc catcgtaaag ttctgttttg ccatccatat
     5641 ctatcttagc cattttaaaa agcttgctaa attcttctat atttacacct tcaaaaacag
     5701 gagtagaaaa tttaactcct ttactccagt ctctagcata gtttaaaagc tcttcatcgc
     5761 ttaagctttt aataaattct ttttcgtttg caagtcttgg aatagaacaa atttcaagca
     5821 ttttcgctct taattcttta agaaaatctt tttgctttct atcaaaaatt tcttgaattt
     5881 gatccccaag tctaagtcca actaaaccta aatgactttc taaaatttga cctatattca
     5941 tacgacttgg aacgccaagt ggattaagcg caatatccac gctcttacca tttggcaaat
     6001 aaggcatatc tacttcagga actatagttg aaactatacc tttatttcca tgacgtcctg
     6061 ccattttatc accgacttta agctttcttt ttgtagcaat ataaacttta acaagcttaa
     6121 ttaccccact tggtaaaata tcatcttttt ctaaaatttc aagcttttca tcgtgttctg
     6181 cttttaattt tttcttctca ttttggaaat gattttttaa atcatcgtat tctttttgaa
     6241 tctctttaga ataagcttta atcaaagttg ttaaagtaaa acgattgatt ttttcaagtt
     6301 cgctaatatc tgcagtttgt ccttttttat aatttttatc tccaattttt tgatcgctat
     6361 ttaaagaggc tttggaaaga agagcacaaa cacgaagcat ttcttctcta tccatcatca
     6421 aaagtctatc atgatgctct ttttctaaag ccattttttc tttatcataa gattttattg
     6481 cgcgatcatc tttttcatag ccttttttag tgaaaatttt aacatccaca acaacaccct
     6541 ctaaagaagc ggttgcataa agggatttat tcacaacatg tcctgctttt tctccaaaaa
     6601 tcgctcttaa aagtctttct tcaggagttg gtttaacctc accttttgga gaaaccttac
     6661 ccaccaaaat catacctggt ttgatatggg taccaatttt tgcaataccg ctctcatcaa
     6721 gatgcgcaac atcttcttct tttacatttg gaatatcttt ggtaatttct tctataccgt
     6781 cttttagttc tcttgcttca atttcttttt cataaatgtg cacgcttgta aaagtatctt
     6841 cacgaataat tctctcactt acaactatag catcctcata gttataacca ttccaaggca
     6901 taaaagcgat taaagcattt ttacctatag caagttcgcc ttgatccata gaaggaccat
     6961 ctgcgataat ttgtcctgct tttactatat cacctttttt aacaataggg tgttgaatat
     7021 aatttgtatt ttgattggtt cttaaatttt tctccatagt gtaatggtca ataaatggac
     7081 ctttatcatc ttcacctaaa atgaaaatgc ttttattatc cactttctca accacaccgc
     7141 cacgctttgc tttaacagct tcccaagcat cacgcgcaat aatttgttcc atacctgttc
     7201 ctactatcgg agctgaagca gtaagaagtg gcacagcttg acgttgcatg tttgaaccca
     7261 ttagtgctct gtttgcatca tcgtgctcta aaaacggaat caaagaagcc gcaaccccaa
     7321 caaccatacc tgagcaaaga tcgattaatt gcacttcttc gcgtcttgca agtatagttt
     7381 caccatcttg tctagcctca acaaattctt ctactatatt gcctttagca tcaaccttag
     7441 ttgaagctgg tgcgataaat aagccttctt cttgtgttgc tgtaagataa acaacttcat
     7501 tagtcacttt accatttaca acttttctat atggtgcttc aacaaagcca agttcgttta
     7561 cttttgcata agtagaaaga gtgttaatca aaccaatatt ttgaccttca ggtgtttcaa
     7621 ctggacaaat tctaccataa tgtgtcgcgt gaacatcacg cacttcaaaa cctgctcttt
     7681 cttttacaag tccaccttca ccaagcgctg ataaacgacg cttatgagta acctcgctta
     7741 aagggttggt ttgatccata aattgcgaaa gctgacctcc tgtaaaaaat tcaatgatag
     7801 ttgtagtaat cattttagga ttgattaaat cataaggcat tactttatca agatccgcat
     7861 ttaaagaagt aaatttatct ctgatcgcct tttgcatttt tgcaagacct aaatgaagtt
     7921 cattggctaa aagttcacct atagaacgga tacgacgatt tcctaaatga tctctatcat
     7981 caatatgtcc tttaccattt tttactttaa ttaaatattt tgcagtttta ataatatctt
     8041 cattagtcaa aacagtaaca tactcaggta cttcaagacc taatttatgg ttcattttca
     8101 tacgacctac cttggtaaga tcgtatcttt caggattgaa gaataaatca tttacaaaag
     8161 ccttcgctgc atcttttacc acaggttcac ctgggcgcat aactttgtaa attctaatcg
     8221 cagctaaatc attttcatca tcgatatttt cactttgttt aagaagtttt agagtttctc
     8281 catcttgagc aaaggagtta ataatcgctg catcaacgcc attagccaag tcatttgcta
     8341 tatcaaaact tttttgctct ttaatcttag caagcttact ctcatctaac aaagttaaag
     8401 aatcaaataa aacctctcca ctttctttat caataatagg atttgctaaa taacgattaa
     8461 gtaaaatttc tacaggatat tctatccatt ttaaaccgtc tttaataagc tgttctgctt
     8521 ttttctttgt aagtcttttt ccagcttgat gaacgatttt tcctttttca tctttaatat
     8581 catattctat tctatccata aaatcatttg gattaaattc tgttaaaaat ttatcttttt
     8641 tcacatgtat agtctgaata ggataaaaca acttaataat atcttgtttt ttatacccta
     8701 aagctctaaa aagcatagtt acaggaactt ttctacgctt attgattctt acatacaaaa
     8761 catctttggc atcgtattca aaataaagcc acgaaccacg atcaggaata atttgtgctg
     8821 tataaacaag cttatttgca accgttgaac tttcttcttc tttaaaaata acaccagggc
     8881 ttctatgtaa ttgatttaca accaccctct caaccccatt aatgataaaa gatacacgat
     8941 ctgtcattaa aggaatttcg cggatataaa tttcttgttc tttaatatct tttacgccaa
     9001 ctttttcccc tgttttttca tctttttcat gcagagtaag acggattttc atttttaaat
     9061 ttacagaata agtcaaacct ctttccatgc attcgcgaat ggtatatttt ggcttgccta
     9121 tttcactact aacatattca agactcaatc tattttgcgg atcatgaata ggaaaaattg
     9181 atttaaaaac tttttctata ccactttcac cattatcaag atttaaaaaa taatcaaaac
     9241 tctttttttg taattgtaga agatttggga tttctatttg ttttgaaatg tttgagaagt
     9301 ctactcttaa acgatttcct aatttattat ctaacatatc gcacatacct catggtaaat
     9361 tttgtaaatt taaaaaagaa gacctaaaaa ttaggtaaaa ataaaaaaag aagacttgcc
     9421 ttggcaaatc ttcttctaac tttaaagctt aaaattactt aagttctact ttagcaccag
     9481 cttcttcaag ttgtttttta gcttcctcag cttcagcttt agccacaccc tcttttagag
     9541 ttgaaggagt ttgctcaact gcatcttttg cttctttaag accaaggcct gtaagagcac
     9601 gaacgatttt aataacttca atctttttag caccgccatc agttaaaacg atatcaaatt
     9661 cagttttttc ttcagcagca gctgcagcac caccagctgc agcaccacca gctatcatta
     9721 caggagcagc agacacacca aatttttctt caaactcttt tacaagttct gataactcaa
     9781 gaacacttaa atttgaaata tattctaata catcttcttt agagattgcc attttttatc
     9841 cttttattta atttattcag attctttttt atttttaagc gcatttaaac ctattgtgaa
     9901 attggtaatt ggcgcattcc aaacttgcaa aagcatagca agcaactcat tgcgtgaagg
     9961 cattttagca agagctttaa ccttagcaac atctgcaact tcgccttcaa tatgagctgt
    10021 tttgatttca aatttatcgt tattttcttc aaatttagca gctacttttg aaacacctag
    10081 ctgatcttcg ccccaaagat aaatatttgt atctttaaga actagacctg ttttaccgga
    10141 attattaaga gcaatgttag ccaaagtatt tttaacaatt tgaactttta cattgttttc
    10201 tcttgcatta tttctaagct cttctagttt ttttgtgcta agacctctgt aattacaaac
    10261 tacaatagct tcactagctt taaaaccttc ttcaagttta gcaataatct caactttttc
    10321 gcttctagtc acattttctc ctttccgatt gagatttcaa gtagagtgga aatccaatta
    10381 agcttacgcc tcgactatct tcaatctaaa ataaacatct caaaaaatca aaaatttttt
    10441 caaatgttta ttttaaaaca aaagagttgc aaaaaagcaa ctcttatttc atatcaagca
    10501 attcttgtgt ttcaagcttt acagaagggc tcattgtcaa agataaagcc gcatttttaa
    10561 tatatctacc tttagctgca gcaggtttat gtttgttaat tgcctttaca aaagtgctaa
    10621 cattgtccca taattgttct ttggaaaaac ttactttacc aagacctgca tggatatttc
    10681 cttgcttatc aacacggaaa tttacctgac cactttttgc attattaact gcttgagcaa
    10741 catccatagt cactgttcca gttttaggat ttggcattaa accttttggc cctaaaattc
    10801 taccaacttt accaacaagt cccattaaat ttggagtagc aatcaaaaca tcaaaattca
    10861 tattaccttt ttgaatttct tctactaaat catcgctacc cacaatatct gcaccagcat
    10921 ttttcgcttc atcagctttt gcgtcttttg caattacagc aacacgaact tttttacccg
    10981 ttccagcagg taaaacaaca gatcctctta ccatttgatc tgcatgtctt ggatcaacat
    11041 taagttttaa agcaatttct acagtctcat caaatttagc agactttaaa gtctttattg
    11101 tatcaattgc atcgcttaaa gcatactctt tatttgaatc aattttttgt gataattctt
    11161 ttaatctttt tgctatctta gccatttatt ttctccgcat tttaaagtgc taccgccttt
    11221 taccttggcg gtgaaaggat taatctacga tttcaacacc catagaacga gctgaacctg
    11281 caataatttt agcagcttga tctctatctt tagtatttaa atctgcaatt ttcttatcta
    11341 ctatttctaa aacttgagca cgagttaact tacccacctt atttttaagt ggattatccg
    11401 tacctttaga aattccagct gcttttttga tcaaatccgt agctggcggt tgttttgtaa
    11461 taaaagtaaa acttttatct gcataaacag tgataacaac agggatatta aaacctgcca
    11521 tatcttttgt tctttcatta aaagccttac aaaactccat aatattaaca ccttgctgac
    11581 ccaaagcagg accaacaggt ggtgatgggt ttgcttttgt ggcagcaatt tgcaatttaa
    11641 tttcgcctac gactttttta gccataacaa atctccttac ttgatataaa ttaaattatt
    11701 ttctcaactt gagaatataa gatctccact ggagttgaac gtccaaaaat agaaacattt
    11761 aattttaata aaccacgaac catatcatac tcttctacaa ttgcagtaaa gtttgcaaat
    11821 ggcccttctg tgattctcac attttcccct tcttcaaaag aaatctttgg tttaggcgct
    11881 gcacgattgt gaactttttc caaaatcaaa ttaatatctt tttctgttaa aggggttggc
    11941 tttttggatt ctccaataaa acgaccaacc tttggaagag attgaatgcg atgccaaagc
    12001 tctgtattta aatcaagaag tgcaaaaacg tatcctgaat acaaacttct ttcgctaatc
    12061 ttctcctttc cattcttaaa ttcaataaca tcttcagttg gaacaacaat ttctttaagt
    12121 tgttcttcaa ttccgttatc ttttactaaa ttttcaatgg ctcttttaac tgccatttca
    12181 ctgccagcat aagtttgaat tgcataccat ttatgagtac tcatttactc tccttatacg
    12241 atcgcagaaa caatagagga cataagccaa tccactaacg ccaaaaacaa agaaatcacc
    12301 acaacaacca caaaaactgt aatataggca tttcttacct gttcttttaa aggaaaaatt
    12361 actttcctta attcggcttt tgataattta aaataagtta ttaatttttc catttattta
    12421 aaccttaatt atggcagggc aagagggatt cgaaccccca accatcggat ttggaatccg
    12481 gcgctctacc gttggagcta ttgccctaag ggcgcaagct taacttttta gcttaacttc
    12541 tttgtgaagt gtatgttttt ttaatcttgg gcaatatttt tttaattcta atttttcagt
    12601 agtattttta ctatttttat aggtgctata attaatatca ccacattctt cacactttaa
    12661 accaacttta attctcattt caattttcct taaaaaatta aagccaagct tttaacttgg
    12721 ctttattaaa ttatttaata attttagaaa caacacctga accaacagtt ttaccacctt
    12781 cacgaatagc aaaacgagtt ccttcttcaa gtgctactgg agcgatcaag cttacagtaa
    12841 ttctcacatt ttcacctggc ataaccattt caacaccatc agctaattta atcgaacctg
    12901 taacatcagt tgttcttaca taaaactgcg gtctatagtt gttaaagaat ggagtatgtc
    12961 taccaccttc atctttattt aagatataaa cttcagcttc gaagtcagtg tgtggagtaa
    13021 ttgattttgg tttagcaaga accataccac ggataacttc ttctttttta gtaccacgaa
    13081 gaagaacacc tacgttatct cctgcttcgc cttgatccat ttcttttctg aacatttcaa
    13141 cacctgttac agttgttgtt tgagtatctt taataccaac gatttcgata gtatcaccta
    13201 cttttacaac acctttttca attctacctg taacaacagt accacgacct gaaattgaga
    13261 aaacgtcttc aattggcatc aagaagtctt tttcagtatc acgagttgga gttggaatat
    13321 agctatcaac tgcagccata agatccataa tttttgctga ccattcacca tcttgtccag
    13381 ctttagcttc ttcaagagct tttaaagcag aaccagaaat aataggtgta tcatcgcctg
    13441 ggaaatcata agagcttaat aattctctaa tttccatttc aactaactct agaagttcag
    13501 catcatcaac catatctgct ttattcataa aaacaacaat atatggaaca cctacttgac
    13561 gagaaagaag aatgtgctct ctagtttgtg gcatagggcc atctgcagca gaaacaacca
    13621 agatcgctcc atccatttgt gcagcacctg taatcatgtt tttaacataa tctgcgtgac
    13681 ctgggcagtc aacgtgtgca tagtgacgat tgtctgtttc atattcaata tgagaagtag
    13741 caatagtaat accacgctct ttttcttctg gagcattatc gatattatca taatctttaa
    13801 gctctgccaa acctcttcta gaaagaacag cagaaatagc agctgttaaa gtagttttac
    13861 catggtcaac gtgaccaata gtaccaatat ttacgtgtgg cttattacgt gaaaattttt
    13921 ctttagccat ttttttcctc cgtataaaaa ataaattgag caaagcaagt cttatatcta
    13981 tataattttt tcaattcatg gagctcatag cgggaattga acccgcgacc tctcccttac
    14041 caagggagtg ctctacctct gagctatacg agcgctcaga aaaattatac acaataacag
    14101 acaacaaaaa ctcttaaatg ggatatatac tgtaagttaa aggttttaaa atacagctcc
    14161 cagttctttt aaattattgg agcgggaaac gggactcgaa cccgcgaccc tcagcttgga
    14221 aggctgatgc tctagccaac tgagctactc ccgcaaagca tggtggtgag tcgtggattc
    14281 gaaccacgga aggcgaaagc cagcagattt acagtctgcc ctcgttggcc acttgagtaa
    14341 ctcaccataa aaatattgct ttttcaatat tctggtcaaa cactgctaaa ataaatggag
    14401 ctggttaagg gacttgaacc cccgacctgc tgcttacaag gcagctgctc taccaactga
    14461 gctaaaccag caaaaataaa agtaagatta taactcaaaa aaaaaatttt gtcaagactt
    14521 ttttagtttt tctataaaat ttttagtctt gtaaatttta ttatcataaa ccaatattat
    14581 ttttatctat ttgtgataat caaataaatt taaaaatttc tttgctcttt cgctttttgg
    14641 atttttaaaa aaacttttag gatcattttc ttcgatgatt tttccttcat ccataaaaat
    14701 aattttatct gctacagctt tagcaaaacc catttcatga gtaacaataa gcatagtcat
    14761 accctctttt gcaagattta acatcacttc taaaacttct ctgacaatct caggatccag
    14821 cgctgctgta acctcatcaa aaagcattaa ctcaggattc atgcataaac ttcttactat
    14881 agcaattctt tgtttttgtc ctccgctaag ttctcttgga taagcatgaa ttttatgcaa
    14941 aagccccacc ttttcaagcc aaattttagc ctcttgtaaa acctcatctt tctttctttt
    15001 ttgcactttc ataggcccta aaagtatatt ttcttcaaca cttaaatgct caaaaagctc
    15061 ataagattga aaaaccatac caactttttg acgcattctt ggccattctt tgaaatcttt
    15121 atctattttt tcattgtcaa tataaatatt accacttgca atctcttcaa gcccattaat
    15181 acaacgcaaa agcgtagatt ttccgcaccc actaggaccc aaaatcacca caacttcctt
    15241 atccttaact tctaaattaa tatcttttaa agcatgatgc gaaccataat acttttgtaa
    15301 attttctatt tttagtatac tcattttagc tccatttttt ctctaatttt cttgaatata
    15361 aagtgatagg ataacaaagt ataaaaaaga taaaaaaaat caaaccataa ataataaaag
    15421 gtgcaaaatc atttctatta tgaaattcta taatttgttg ccctactttt acaagctcta
    15481 ccgcgccgat taaataagca aaggttgtac ttttgatcat gcgagtaagt aaattcatgc
    15541 tcataggagt taaacgacgc atagcttgtg gaataataac ataagcaaaa ctttgcaccg
    15601 tatttaaacc taaagatgat gcactttcat actgatgttt tggaatactc tgtaaggaaa
    15661 cacgcaccaa atccatcatc tcaaaacaac cccaaatgct aaaaacaata atagctacac
    15721 ttacagaact caaatcccac ccaaaccatc taggaaaacc aaaatacacc acaaaaaacc
    15781 atactaaaag tggcataaca cgtacaaatt ctaaacctaa acgacaaaaa gcatagatat
    15841 aggtattttt aaaactcatt aaaattccca aaaacaaccc gcctatcgaa gtaataatag
    15901 tgctgataaa tgaaatttca agagtgacaa aaagcccttg ccagagtctt aaaagcgtat
    15961 cggtatttaa aagttcaagc ataaagcaac cttttttcaa actttagcaa aataaaagac
    16021 aaaggcaaaa taatgcacaa atatcccata aacaacaaaa acaatagctc atctgtctta
    16081 taggttaagg aatttaaact cttcattaaa ttcaccaaat ctggcaaggc aataatgcta
    16141 acaactgaag tttctttgat taaaaatata atattagcac taatacttgg catagaaata
    16201 gccaaagctt gcggcaaaat cacataacgc aaatttccaa attttgaaaa acccaaagaa
    16261 agtcctgctt caaactgctg ttttcttatg gcttcaaatc ccgcccttaa actctcagcc
    16321 atataagaac cccctaaaaa actaagtcct actatagcac aagcaaaaga aggtcttaaa
    16381 gtttcttcta cgcttaaaca aattaaattg agcggtggaa tttgctctaa atgtatatta
    16441 aatttaggca aagcataata taagaaaaaa agttgaatta ataaaggcgt atttcttgaa
    16501 aactctatat aaagcttgca aatattttct aaaattttta ttttaaaata actcattaaa
    16561 atgcaaaaca agcctattat taaagaaaaa ataattccaa aaaagcttag ttttatcgta
    16621 agccaagcag ctgttaaaaa agcgggagct tgagctaata taaaatcaaa atccattctc
    16681 taccttaatt ttaccaaagt tcttttataa tcatatcttt atttaaaatt tcaattttac
    16741 ctttttttgt atcaataagt tctgaaattt taagctcttt taacactcga gataaagatt
    16801 gcgctctaac atttaaatca attgcgattt gtttttgcga aattgtatct aatttttttt
    16861 cattttccaa aagatacttt aacaatctcg ttcttaaatc taatgcattt tgagataatt
    16921 tcttttctaa aattttgatt ttatcaaaaa gtgagctgat aagtaaaaaa ttgaattctt
    16981 tattttcact gcataaattt tgaaaattaa taaaatcaat ttccaaaatt tctccatctt
    17041 cttcaaagat ggcattagca ggataattta attttttaaa agcaggcatt tctgctataa
    17101 aatttggagg attaaaataa tgcaaagtaa tttctttatc acttgatgta cttttataaa
    17161 tgcgtatttt tcccttgagt aaaataaaaa attttttagc ctcttcgcct tcataaaata
    17221 aaatactatt tttttgaaat ttttttaatt ttcctacact agataaaagt tctaaataat
    17281 ctttcattat ataatatttt ccattcttaa cttatgttaa atttaattta tcttattttt
    17341 gctatattaa cgccataaaa ttaacattca agaaaggctt atatgaaatt tgaaacaatt
    17401 aatcaagaaa gcatagcaaa actcatggaa atattttatg aaaaagttag aaaagataag
    17461 gatttaggtc ctatttttaa caatgctatt ggaacaagtg atgaagagtg gaaagaacat
    17521 aaagcaaaaa taggaaattt ttgggcaggc atgcttttag gcgaaggtga ttataatggg
    17581 caacccttaa aaaagcactt agatctacct ccttttcctc aagagttttt tgaaatttgg
    17641 ctaaaacttt ttgaagaaag tttaaatata gtttataatg aagaaatgaa aaatgtcatt
    17701 ttacagcgtg cacaaatgat agcttcacat tttcaaaata tgctttacaa gtacggcgga
    17761 cattaatttg gcaatttttt tgccaaatct ttttttacct tttctaaaat ctcctcatcc
    17821 ttggaaaaat caaaaaattt aaactcattt ccatgttgca taaaaccatc gagcaaatct
    17881 ccactcaaac gatttttaag atcaagctct gctattttaa acccatctaa agtgctagca
    17941 aattctttta aacgactcgg aatttcttta agcttagtat aaagatagca agcactttta
    18001 agccctacac gacctacacg gccacgaagt tgatgtaaag tagcaagtcc taaacgttcc
    18061 gctcctacaa tcactatcat actcaatctt ggcaaagaaa tacctacttc caccactgta
    18121 gtgcttagta aaatatttcc ctcgtctcta aaacgctcta aaatttcatc tttttgttta
    18181 tcttttccat gagttacaaa aactttttca taatgactct gccaatattc tttggcctgc
    18241 tctaaagaaa gataaggaat cttatcacta gcactcaata agggataaat aatgataatt
    18301 tgatgatttt tagcgatttc ttctttgatc ttctcgctaa gcttagaaaa accttcattt
    18361 tgtatgcaat aagttgtaat atctttttta aaaggcattt gtttaataaa gctaaaattt
    18421 aaaagttcag attgtatcat gcttaaagtt cttggaatag gcgtagctga aaactgtata
    18481 aaatgagggg caaattcttg tttatttaaa gaatgaattt tctcacgctg agctgatcca
    18541 aaacgatgtt gttcgtctat cattacaagt acggcattat ggctttctaa atgaattaga
    18601 gcatgagtgc ctataacaag atttgctttt tggatatttt gttctaaatc tttttctttt
    18661 ttaccccctt taataaacaa aatattcata aaatcaggta aaaatttctt agcctcttca
    18721 taaagctgat acgctaaaat actagtaggt gccattaaaa tagcttgctt aggataaacc
    18781 atcaaagccg caccaagtaa aaccaaggtt ttaccacacc ccacatcacc cataatcaca
    18841 cgccttttgg cttcttttga gtgtaaatct ttttctatgt cttttaaggc attaagctga
    18901 tctttagtaa gagaaaaagg caaatcttta agccaattgg ctatattaaa aacattgatt
    18961 tgatgagctt taaaatgcgt ttttttagct tttaaacgct ttaaaaaatt atatatttct
    19021 atatatttta aatctttgct aaaattttgc aaattttcaa acataaaaaa acttttttca
    19081 tcataagcat gcaaatttaa aagaaaatgt atatatttat cctctatgcc actttctttt
    19141 aaattttcat aattaagata tttatgtata aaagcagcaa tttttgtatc ttttaaacct
    19201 aaaatttgat actttggact aaaaccctca aaagaagtta aaattttagg attgttaaat
    19261 tgccaagtgt gattaaaatg cgagagttta gcattaaaaa taagctcttt tcctacctta
    19321 caaataccaa aatgccaagc tctaggatga aaaaacacaa aagaaatatt ttcttgccat
    19381 tcctcacaaa aacctaaacc aaaaagttga ttttttcttg aactaacgct ttttatagtg
    19441 attttttggg tacaaatttc attttcttta ggatttttac ttggatttaa attttcaatt
    19501 tttttaggta aaagaagcgc taaatcaata gcacttctaa tttttaattt tttaaaaaat
    19561 tcaaaatcac tttctttaat tttcattttg tatgcttgca aaacttatat ttaaaagctc
    19621 ttgatgtttt ttaatataag catttatggt ttcaagttta accttttcca taagttttaa
    19681 ctcttcttta taatatccca aatttaaacc ttgataaaat tcgttaaaag acatagataa
    19741 acgcttgctt aagctttcat aacgcaaagg agttgatcct atgagaaaat ttttagcttg
    19801 atcaagttca ttttgagtca tgccattttt tataaaatct tcaaaaagct cttttacgat
    19861 ttttttagct tctttagcgc tttcattttt agtttgtaaa tatccaaaaa ctctagaaaa
    19921 agacatattc atatcaagca tagcataagc tgagtatgca agacctcttt taacacgaat
    19981 ttcttccata atccttgaac caaatcctcc ttgccctagc acaaataagg caatttttgc
    20041 aagatataaa tccttatctt taaaatcagc aaaaaaaggc gtagcaaaat aaatataagc
    20101 ttgttcactt tctgggcgta ccaaaatttc atctttgatg tttttgccta actcatattt
    20161 ttttggagta ttttttttgc ctatttgaag ttttgataag agttttaaaa gatcttcctt
    20221 ggcttgtttt tcttctaaat ctcctcctaa aatcacaacc aaatcactaa gatggataaa
    20281 atttttataa aaattttgca aatcttttaa agacaaagtt tctatacttt tttcatctcc
    20341 atcatttgga ctttgaaatt ctttacattt aaaaatttga gcattgagta aattttttgc
    20401 taaataatca aaatcactat ttttactcgc gagctcacct aaggcattga tttttaattt
    20461 ttgcaaagtt ttttcttcta ttcttggttt taaaagcaat ttttctaaac tctttaaagc
    20521 aaaatcaaaa ttttctttca agcaagaaag attgatttcc aaactttcaa aaccactact
    20581 tgcctctaaa tttatcgctc taaattctaa atccttaaaa aatttatcat ccacgccttc
    20641 atttaaaata cgtgaaaaca tcttagctaa gcctgctatt tcatcataac ttctagcaca
    20701 atttctaaaa acaagcttta aaacaacaat aggaaaatca gaattttttt caaaaataaa
    20761 agggatttta atacccctac tctctaaata ctgcattaaa acctttctaa aatttcataa
    20821 gcggtattgc gtttagctgg attttcgcct aaacttctaa tcagccttat catctcatct
    20881 tgattcattc tataacttgc tcctgcagca cttactacat tttcttccat catagttgag
    20941 cctaaatcat tggccccaaa ttttaaagca agttgaccta taagcgagcc ttgagttacc
    21001 caagaacttt gtaaattttt aaaattatct aaataaagtc ttactaaagc taaaagtctt
    21061 aaatatttgt tagaactttg tttcataatc tctggatgtt tttggattaa agcagtatta
    21121 tcactttgaa agctccataa aataaaagct ctaaatcccc ctgtttcatc ttgtaatttt
    21181 ctcaaatgct caaaatgatc gatgatttct tcatcatttt caaccgttcc aaacatcata
    21241 gtagctgtac ttttcatacc aattttatga gcttggcgat gtacttctaa ccaagtagct
    21301 gtatcacatt tattgggtgc gataatatca cgcaccctat cgcttagcac ctcagcacct
    21361 gctcctggta tagaaaataa acctttagct tgcaatcttt ttaacacttc agtgattgaa
    21421 attttagatg cttttgcaat ataagcgatc tcaactgctg aaaaaccatg cacagtgata
    21481 tttggataat gttcttttat ccaagaaact aattcttcat accattctat ttttaatttt
    21541 ggatgcaccc cgccttgaaa aagaatttgt gttcccccga tagcttcaag ctcttctatc
    21601 tttttgccta tctcttcaaa gcttaaaata taagcatcat cttctttatg atggcgataa
    21661 aaagcgcaaa aagaacaatc aatacaacaa acattggtat aattaatatt tctatccaca
    21721 acaaaagtgg tgattttttc aggatgaagt tctaattttc ttttataagc catttctcca
    21781 agttctgtta aacttgcatg gtgtaataaa tctaaagctt cttttttatc cagtcttttc
    21841 aaaatttttc cttgtttttt acataattaa aataattata gcatttaaaa tataaattat
    21901 gctatagttt cgcttatgaa ttacattgaa ctattaaaaa ataataaaaa tatcagaata
    21961 ttagcttcgg ttcagtttat agtatatttt ggagcatggt tttctcaaac gggagttttt
    22021 acccttttag tcgaacttaa tgctcctact tgggcaacag ctacaagtgc tatgcttgct
    22081 tttttacctg gagttttact tgctcctatt aatggcgtca tagtagagaa aaataaacct
    22141 aaaaaacttt tactcagtat gattagcata gaattaattt ctattttttg tcttattttt
    22201 gtcacaagtc ttagtatgct ttggctttta tttattttaa ttttcataag actttgtgtt
    22261 gcttcgattt attttcaagc tgaaatgagt ttattggcca aaattttaac tcctcaagaa
    22321 cttaaactcg ctaatgaaat gcacagtgtc atttgggcga tttcttatac agcaggtatg
    22381 gcaagtgcgg gaatttttat ttattttcta ggagttaaaa ccgcttttct atttgactgt
    22441 atacttatac tcataggcat ttctttttta gtaagattaa gcattcctga ttttcatcaa
    22501 aaaacacaaa gtcgcttttt taccatgata aaagaaggat ttttctatgt tttaaacaat
    22561 aagataattt ttcatcttat cttgcttcac gcttttatag gtttaactgc ttatgaaacc
    22621 ttggttacgc ttttagcgca acatcaatat aaagaagttt tatctgctgc tttagtaata
    22681 gggtttttaa atgcagtacg tgcttgttct ttagctatag gacctatggt tttaagcaaa
    22741 tttattaatg ataaaaattt attttacatg tatcttggtc aaggcttggg tattatactt
    22801 tgggctttaa ctcaatttaa tttttatatt tcttttttag gtttaatcgg tgcaggtttt
    22861 tttacctcag cgctttgggc ttacacctac actatgatac aaaaaaatgc cgacaaagaa
    22921 tatcatggta gagtgatcgc ttatacagat atgatttatc ttagttttag cgctattatt
    22981 tcaatgctta tgggcttttt atttgaaata ggcttgagtt tagaactaat tacaggctta
    23041 ttgggtatga tttttatctt tgcggcattt tattggaagt ggttttataa aaaatatttg
    23101 tgaaaattca caaatatttt aaattttaaa caaatcttga agatttttca ttgcttcttc
    23161 attgctgatg gcattattta gctgcgatga gcttaattca ttgagctcta tttcataacc
    23221 acttaacata gaagcaaggc gaatattaat accatttttt cctatagctt tgcttttttg
    23281 ttcgctattt aaacttacaa tagctttttt atcttcaatt tttacagaat ttacaatagc
    23341 aggagccaag gcacgagaaa ttaaaatttc actctcattt gtaaattcta tacaatcaat
    23401 attttcatta tgaagctctt tgcttaccgc attaattctt acacctttaa cacctactgt
    23461 agctcctaca ggatcgatat ttgttccatt ggcctgaaga atgatttttg ctctttcacc
    23521 tggaattcta gcacatccta taatattgac ataaccatct ttgatttctg gaacctcagc
    23581 ttcaagtaaa cattctaaaa atttaggact tgtacgacta agctcgattt taataccctt
    23641 atctgtataa acacggcgta tcacagcttt taccacatca cctattttaa acttttcccc
    23701 tttaatgcga ttttttctcg gtaaaaaagc tcttaattca tctatttcaa taaaagtatt
    23761 ttcttcatta tccactctaa caactgtacc aaaaaccatt tgccctactt tgtttttata
    23821 cttttcaaaa atagtttgtt ctaataattt ttgtatatga tattcaagtt ctttatgcaa
    23881 ggtatttacc gcagttcttc ctaaattttc caaagaacat tcataggtta attcatctcc
    23941 tatttcaaca tctggagctt ctgattttgc cttacttaac gcgataaaac tctcactttt
    24001 attttgcaat ctctcgtcat tatctgctac tatggtaatt ttttgataaa gatttaaatt
    24061 tttaggatcc acaaaaaact catattcttg tccataaatt ctttttgcag tattgattaa
    24121 agcggtagct accttttctc ttacattctc taagtttaaa tttttttcat tagcaataga
    24181 ttcgataata tctgctatct tttccatatt ttataaaacc ttttttgtgg gaaatttaaa
    24241 taatgtagat aaaaattata tccttaataa gtttaattaa aagtaaaatt tgctaaaatt
    24301 atagattaaa atgaaaattc ttaaggattt agctatggaa ttaaaattgg caagaacttt
    24361 gattaatgaa aaacctaaaa atattagcct agaaaaaatc gaagaggcta tagaaaaaga
    24421 aggacaaaag tttttttatt ttgataaaga taatacacac aaacaactca ttgcccttgt
    24481 aaatcatttt gaaaaaaaag gagtaagcat ttatcataga accgtaaaat acggacttga
    24541 tgataatgat tttatgtatg aggtacatat tctttgagtg ctaaaaaact ttttatccaa
    24601 actttaggtt gtgcgatgaa tgtcagagat tctgagcata tgatcgcaga attaacacaa
    24661 aaagaaaatt acgcactaac agaagatatc aaagaagcag atcttattct tatcaatacc
    24721 tgttcagtgc gtgaaaaacc tgtgcataaa cttttctcag aagtaggtgg ttttgaaaaa
    24781 gttaaaaaag aaggtgctaa aataggagtt tgtggatgta ctgcatcaca tttaggaaat
    24841 gaaattttca aacgtgctcc ttatgtggat tttgttctag gagcaagaaa tatttccaaa
    24901 atcactcaag ctataaaaac tccaaaattt atgggcgtgg acatagacta tgatgaaagt
    24961 gaatttgctt ttgcagattt tagaaatagt atttataaat cctatattaa tatctccata
    25021 ggttgtgaca aacactgcac ttattgtata gtgccacata ctagaggaga tgaaatttcc
    25081 atacctttta acatcatcta caaagaagct caaaaagcta ttgaaaaagg cgctaaagag
    25141 attttcttgc taggacaaaa tgtcaataac tatggcaaaa gatttagaaa cgaacataaa
    25201 aaaatggact tttcagatct tttagaagaa cttagcacta tagaaggttt ggaacgcatt
    25261 cgctttacaa gtccacatcc tttgcacatg gatgataaat ttttagaagt ttttgccaat
    25321 aatccaaaag tttgcaaatc catgcacatg cctttacaaa gcggctcaag tgaaatttta
    25381 aaagctatga agcgtggcta tactaaagaa tggtatttaa atagagcttt aaaacttaga
    25441 gaactttgtc caaatgttag catttctaca gacattattg tagcttttcc aggggaaagt
    25501 gaaaaagatt ttgaagaaac tatggatgtt ttggaaaaag tgcgttttga acaaattttt
    25561 tcttttaaat actccaaacg ccctttaaca aaagccgcaa ccatgcctaa tcaaatcgat
    25621 gaagaaacag cttcaagaag acttagcacc ttacaaaatc gtcatagtga aattttagat
    25681 gaaattgtaa aaaaacaaga aaataaaact tttaaagttt tatttgaaga attaagagca
    25741 ggcaatagca ttgctggaag aacagataat aattttttag ttcaagttga aggtagcgaa
    25801 gaacttttag ggcaatttaa agaagtaaaa ataactaatg caaagcgtat ggttttatat
    25861 ggggaaatcg tttaaaatcc attgcttaac atatataatt ttcatcttgc aatggcttat
    25921 ttttttaagc tgtaaaaagc actataaagg tgaaaaagtt gaccgtaaag ctggtgtgat
    25981 acttttttgg catggaaaat tagcactcat gccttttgcg tttagacatt atagacaaaa
    26041 aaataaaaaa gcctatgtca tgatctccca ccataaagat ggagaacaaa ttgcaaaaat
    26101 catcaagctt ttcggtcttg atactgtaag aggaagcact tcaaggggtg ctagcagtgc
    26161 acttagagct gcatttaaag ttttagaaca aaatgacgat atagttatca cgcccgatgg
    26221 tccacgaggg ccttatcata gtatttcaga tggttctatc attttggctc aaaaaaaaga
    26281 actaaagata agaattttaa actatgaagc aaatcgtttt tggaaattta aaagttggga
    26341 taagatgatc ttgccaaaac cttttagtaa gattacttat agtctaagtg aacctttgga
    26401 tattttatct ttagataaag aaaaagctaa agaatttcta atgaaacaat ttgataaaat
    26461 tagcttagct gatcaattta aggaatgaaa tgttattttt acttaaaaaa atatttccac
    26521 aactttttat tagtattatt ttagaagata aaaaaaatat tgtaaaagct tctatttata
    26581 gaggaaataa actaatcagt agcaatgaaa aaacttttga taaaagcgaa aatttactag
    26641 aatacataaa aaatttaagc aagcatttct tattttacca cactgcttta tttttagatg
    26701 ccaaagaaca aggattaata cctagtacaa atattcaaga ttgtgagcac tttaatatag
    26761 gaaaaatcag cttacagcat attttgttta ataatgccct tgtttatacg gctaccgaac
    26821 atgtggaata ttatagcgag ctttttgaag aatatagagg tttagatttt ttatattccc
    26881 cttttgctct tctttactac aatatacaaa aagaaaaaca gcctgatgat caaattttac
    26941 tttatggatt taagcaagga catcttttgg caattattgt tgctaaaggc aatactattt
    27001 tatacggtga ttttaaaata tttgagcaag aattaggttt agagcttgaa cttccatcag
    27061 aagataatca agaaattgaa aacaacaaca atgatactga agttacccta gataacttca
    27121 atgaagcctt aaataataaa tttgatctac ttgatcaaga aaataatctt gaaactttga
    27181 ataataatga taattttaat cttgatgaat taaatcaatt tagcaatgat atggaactat
    27241 gccgttatat tattacgagc attgaaaaat tttataatga tgataaatat gctggggtat
    27301 ttatcaatgg tattttatta tatagtgaat cagatattaa cataagtgct attgattttt
    27361 tagaaagtga aactttttta gagataaaaa cgaaacaaat caacacctta gatcttatga
    27421 tagaattgat gcaaaaggag cttaaatgac ttatagcttc atacagccaa gaaaaaaacc
    27481 tattttcaca ctctttgata aaatttggct aggacttttt ggttttagta tattatttat
    27541 cttgctagta tattttacat atacaataaa aattgcatta atcaatagct ctatcgataa
    27601 tgaaaaacaa caagttatag tgcttcaaaa tcaaactaag caaaatgaaa tgctttatga
    27661 aattttattt gatcaaagcc aaatagcgaa aaattttaac actcaaaatc aaattgttaa
    27721 agaaagctta agaaatctat ttgatattat tgtaaaaact gataatatta ctcttgaaag
    27781 tgttgaacaa gacgaatatt ccttaaaact tatcggagtc actcctacaa gagaaatgtt
    27841 tactctactt ttagaaaccc ctttaaaaag catctttgat caaagctata caacctatta
    27901 tcgcttagat aatgggtggt atcgttttgt tagtattagt aaacaaattc caggagttgc
    27961 agatgaaaga taaaagtcta gaagaaattg atttattaaa gcttatcatt tgcgcgttaa
    28021 gttttataag cgtttgcaca gccttgatct tatttttact tttaccgaca ttaaaaaatt
    28081 ataaacaagc aaatcttaga gaaaactcac aacttgctat cttaaaagcc gctaaattaa
    28141 aatttgactt tagtgaagat aaaatatcaa ctctaagaag cgaaaacaac aaaagtttag
    28201 agcaatttga gcaaaatttt aatataggaa attttgatat ttttttacaa aaatattttc
    28261 aaaatgtaaa aattcaagaa actaagcccg aaaaacaaga aaaatatcta aaaaaccgct
    28321 tagccattaa agcgacaatg aacaatccta gaaggcttta tgattttatt gatgctctaa
    28381 aaaactataa taacttaatc aagcttgatt atccacttaa tcttaaagca ggagagcaag
    28441 gtatctctat agatcttact ctcaaagttt attcaagcta aactcacatc ttcgcctttt
    28501 aaaatttgat tcatagtatt cattgcacac atttttccac acatagaaca tgagtttaaa
    28561 tcatcaggac gacgctcatt aaacattttt ttggcctttt ctccatcaat agcaagttta
    28621 aacattttct cccaatctat ctcttgccta gccttactca tctcatcatc tcttgctctt
    28681 tcttttggaa gtttagctat atctcctgca tgagctgcaa ttttagtcgc aactataccc
    28741 tctctaacat cttctaaatt tggaagtctt aagtgttcag caggtgttac ataacacagc
    28801 atatcagcac cgctagctgc agccacagct cctccaatag caccactaat atgatcatac
    28861 cctgcgccaa tatctattac caaaggtcct aagacataaa aaggcgctcc tttacataaa
    28921 cgcttttcta attgcatatt tgcctctatt tcattaatag ccatatgccc tggaccttct
    28981 atcattactt gaatcccaac atcccaagcc ctttgagtaa ggagtgataa ttctataagt
    29041 tctgaaattt gtgccccatc acttgcatcg tgagtagagc caggacgcaa agcatcgccc
    29101 aaagataaag ttacatcgta ttttaaacaa atgtcaagca aatcatcata atactcaaaa
    29161 aaaggatttt cagcatcttt catcatcatc caagcataaa gtacagagcc tcctcttgaa
    29221 actatatttg taagtctttt actttgttta aaaatatgcg ctgcgcgaga attaatacct
    29281 gcatgaattg tcataaaatc aaccccactt ttagcatgat gatatacaac atctaaaaag
    29341 tctttggcat taatttgctt taaatctttt tctaaaaatc ctaccgcatc atatacagga
    29401 actgttccta tcatagcttt tgaaacatta acaagctcgt ctctaaaacg acttgttttg
    29461 ccataattgc ttaagtccat aatcgcttct atatcaaatt tatgagcaag ctctactttt
    29521 ttcatttcct cgctataatc aacacaatca tttgaaactc ctaaatttac attaacctta
    29581 gtacgcagtc caaaacctat accatttgga tcaagacttt tatgattaat atttgcaggg
    29641 ataataattt taccgcaagc aatattttca agcaaaaaat ctttacttaa attttctttt
    29701 tgtgcaacaa tctgcatttc tttagtaaaa ataccttctt tcgcataatt catttgagtt
    29761 ttcataaatt tatcctttaa aaaatttgga taaatgaagg gtgagtataa atttttaaag
    29821 tattgaaatt tataaatctt cccgacgctg gcattatcca gatccggttc ggtctaagct
    29881 tttagcttac tctcagcctg ttacacaagc tcccgtcatt tatgttttat tatacacttt
    29941 aaatatttat ttttgcttta tacgtgcagt ttttgtaaaa tttataagtt cttctgtagt
    30001 ttttatatga taaggaagtt ttccaaggca atatttaaaa atttcagcag ctgccaaagc
    30061 atcatctaag gctctatgat gcatattttc cacgccaaga aattctttca aaacctctag
    30121 tttatatttt ggactttcta tacaacattg tgcaaattct atagtgcaaa tacgacgatt
    30181 aagcaaaatg ccaaaaccac actcatttaa agccttagaa ataaaactat aatcaaaacg
    30241 cacattatgc gctacaaaaa tactgtcttt taaaaaaagc ctaaaatcac ttaaaacctt
    30301 tgctaaactt ggagcatttt ccaccatctc ataagtaata cccgtaagtt cagttatatt
    30361 ttttggaatt tcttttactt taacaaaact ttgaaagcgt ccaatttctt tagaattttg
    30421 aatttttacc gctccaattt ctaaaatttc ccccttgctc accccaccag tactttctat
    30481 atccactatg caaaaaattt catctttaat ttttgttgtg cgtgttttaa gagtaaaaat
    30541 attatcttta tttaaagtta aacctaaccc caaaagctca aaagtttcta aatctaaatc
    30601 aaaatttttt aattcttcaa ctttggcaaa ctcttgcatc acccaatcat aaggcttgct
    30661 ttgcttattt aatatagaaa taatctgatc aatttgctgt aaactcaaaa ttcaagcttt
    30721 aaagatgaaa ttgcagtttt ataatcattg gaagaaaaaa tataacttcc agccaccaaa
    30781 atatcagctc cagattcttc taaatcacta gcatttaaac cattaacacc accatcaacc
    30841 tctataaaaa ctttagcatt ttttttatca atcatttggc gcaattcttt gattttttca
    30901 tgtatcaaag gtaaaaattt ttgcccacca aatccaggat taacactcat taaaagcacc
    30961 atatctacaa attctagcat gtgtttaata gaatcaatag gagtatgtgg atttaaaaca
    31021 atagcaggat ggattccttg acttcttata tattcacaaa gccttatagg atgaacttcg
    31081 ctttccatat gaaaagagat aaatttcggt tttaaagaga taaaaagatc tacaaattta
    31141 cttacatctt taaccattaa atgcacatct aatggcaact tactaatagt tgaaatcttt
    31201 tcgatcacgc aaggtccgaa agtcaaattt ggaacaaagt gtccatccat tacatcaatg
    31261 tgtaaaagat ccgcacctgc agcttcaata gctttaactt cttcttctaa tttcaaaaaa
    31321 tttgcagaca ataaacttgg agctacatac atgatcaaaa ccttaaacta tatataaatg
    31381 tgataaataa tattttatcg acttatatat taaaaaaact ataaattatg gaatatttta
    31441 agcttaattt tgataaaatc tccatttaaa aattttcata aggacaaaaa aatggcaaga
    31501 gtatgtcaaa tcacaggcaa gggtccaatg gtgggtaata atgtcagcca tgctaacaat
    31561 aaaacaaaaa gacgcttttt acctaatctc agaacagttc gtgtaacttt agaagatggc
    31621 accacgagaa aaatgagaat tgcagcttct actctaagaa ctctaaaaaa acaaaattct
    31681 aaataatttt gaggatttat tcctcaattt taaaatttcc aatttaaaaa taaactttaa
    31741 caaatcactt atataacaca catttaaaaa ttattattaa ttttattatt ttttaagcta
    31801 aaaatatctt ttaatagtgt aaaatacctt gttaaatgaa ttttaaattt cactaataca
    31861 aggagagttt atgctacatg aatatagaga attaatgtca gagctaaaag gtaaagatgc
    31921 tcattttgat aaactatttg atcgtcataa tgaacttgat gacatgatta aagatgcaga
    31981 agaaggtaga acttctctta gcagcatgga aatttcaact ttaaaaaaag aaaagcttca
    32041 tgtaaaagat gaacttagcc aatatctagc aaattataaa aaataaggca aaacaatgtt
    32101 tggaagtaaa ataaaccatt ctgatcttca aaaacttgaa gaagaaaata aaaatcttac
    32161 acataaaatt gaaaaatttc aatcggaaaa tttagaatta aaaaataaaa ttacatcatt
    32221 agaacaagcg gctttagagt ctaaacttaa aacagatctt ttaaatgttt tattaactgg
    32281 ggttttaaaa aatattacta ttattcaagg cgatatgtta gaaaatgtaa ataaggcaga
    32341 agttatctct agctattcta aaacttctct tgctgaaatg gatgaactta accatattgc
    32401 taattctatc aatgcctctt tgggaaatat tacagaatca gccaataaaa caagagatgt
    32461 tgcaggaaca ttgcatagaa gtgtagatga aattactaat gtaattaatc taattaaaga
    32521 tgtttccgat caaaccaatc ttttagctct taacgctgcc atagaagctg cacgcgcagg
    32581 tgaacatggg cgtggttttg ctgttgttgc cgatgaagta agaaaactag ctgaaaaaac
    32641 acaaaaagca accacagaag ttgaaatgaa tatcaacctt ctaaagcaaa atgcaaatga
    32701 aatgtatact caaagtgagc aagttgaaaa aatttctata gattctaatg ctcatattat
    32761 gagtttttcc gaaaaattta ctcacttagt aaatgaagcg cattctacta attcaaatgc
    32821 agttggtatc gcttcagaag ctttcgtatc tttagcaaaa ctagatcata tagcttttaa
    32881 attaaatggt tataaagaaa ttttttccaa atcaggaaag caattagccg atcatacatc
    32941 ttgtcgctta ggaaaatggc ttgctagcac aggaaaagaa agatttgggc aaaataaaag
    33001 cttcttaaaa attaacgagc cacatgaaaa agttcatgaa aatatgaata atgctataac
    33061 aatagcaaat acagaagata ttagcaaaga tattactcaa cacagcataa ttaataaatg
    33121 cgaagttgct gaaaatgcat cgcttgatct tttcaatgta tttaaagaaa tgcttgatga
    33181 gtcagatcat taaaatccta ggttgaacct ttttaaggtt taacctaaat aatctttaat
    33241 tttccccact tttcctttaa aaaccacata taagcaaaat caagcaaagg cgttcttatc
    33301 atatttttac attttttttc aaaatcctgc accttaacat aaacagcttc aatctcttca
    33361 tcatcaactc cacctccaga agaaatttta tctttttcat caacttctac gaaataaaag
    33421 ctttgcttgc ttacacctga accaaaccct gtataaaaat ctcctatttt ttctaaattt
    33481 ttaggagcat atcctagttc ttctatacat tcttcttttg ctatttcctc taaagataat
    33541 tttttatcca caagcccaga acaaagctct atagtatagc ccatatcatc atcttttaca
    33601 taatctttat catgcatttg atgataccaa agtggtatac gaaattggcg tacaaaaata
    33661 aaactttcta attctttatg atacaaaagc actgaaacac tatctttaga ttctataaaa
    33721 tcccaagtgc aaagcctacc attactttca taagcaaatc tcttaggctt aatataattt
    33781 gatttttcaa aagaaagttc ttttaaattt ttaaacgcca taataaaacc ttttatttat
    33841 ttttcacatt gtactttatt tttgcttttt tgaaaatata aaggtgatta aagccttaaa
    33901 aaattaaaaa tcatatttat aacttaacca aaaacttctt ccttctatat aatcttgata
    33961 gcgatttgca tatccagcag gattagcccc atcccatctt gtaacttgcg gatcaaagaa
    34021 atttttatca aaaagatttt gcactgcaaa acttaagcta gattgcttat tgattttata
    34081 atttatccct aaatctacta tataaaaagg cttatatttt tgccatggca gactaccatt
    34141 accgccacct tttgctttag ctatagtatc aagtcttgct cgtgttttta tataggaact
    34201 aaatttacct cgctcatagt ttaattttaa cattgctata tgtcttggta aattttctat
    34261 tctatcacca ccaaaccaat ttttttgacc atctttgtag cgattatcca taaaagtata
    34321 acttgaattt aggctaaagc cattgtaagt tttggtatta aatgcaaatt ctataccttt
    34381 agtctgcgtt tttccaagat taataggacg cttacaaaca atgccattgc tacaattaat
    34441 atcattttgc atacctgtta aatcttcact actgatttga tttgtaaaat cagtaataaa
    34501 tcctgtaata gaataatgtg caaaatcaaa taccataaaa tcaacaccca attcataatt
    34561 tatactttct tctggtttta agtcagggtt tccaaaataa gcattattat tggcataatt
    34621 ataatatcca tttgtcaact gcttggcagc aggagtttta tagccttttg aaacacctcc
    34681 tttcaaggct atattatcat ttaagtgata aaccaaataa accctaggcg taaattcaga
    34741 atcaaacaaa tcgctataaa tataacgcaa acctgtagta aaaatcaaat catcggttat
    34801 aaaatactca ttttccccat aaagcgcaac cgtggtttga tcaagatttt tacctcttat
    34861 ttgactacct gcgcttgctt gatcattttt taatatctca taatcaatcc ttgcaccaaa
    34921 ggtatttact aaattaccgt attgacctaa attccaaggt aaaacaacct taccttctcc
    34981 tacccaaatt tggctatgca gctccttatc cttagtgcta ccatattgta aatatgagtt
    35041 agttgaacca aaatcatagt taccatcatg attcaaaaca atattatcct taaaaagttg
    35101 tctttcactt ttaatagccc tactacttgt agaattcact gaaatttcat taatatatcg
    35161 ttctatatca aaatatatat tatttttatc atctactgtc caattaagcc tagaaccaaa
    35221 acccaagcta gtaaaagcac ctgggctatg actagcaatt tgataattat caggtctttg
    35281 attgttatta ttccaaaccg gtgtaggcca ttttaaatca gaagctgcct tatcataata
    35341 cttcaacctt gcagaaattg ataatgtatc ttcaatcaaa ggagttgcta cataagcatt
    35401 aaatccccca gcattaccat agtgattaga gtgctgttgt aaaagagtat taaattctat
    35461 atttgcttcg attttatcag gatttttctt agtgataata tttatcacac cgcctacagc
    35521 atcactgcca taaagtgtag aagctggacc acgtataacc tcaatacgct ctatcataga
    35581 caaaggtggc agatatcctg actcactgcc actaaaacca ttatcataaa acccatttgc
    35641 aacactttga cgttttccat caattaaaac tagagtataa gaactaccaa aacctcgtat
    35701 gctaaaatca taagtgcctg ttttattcat agtcacatct acacctggaa tatctcctat
    35761 agcctctcct atatccttaa ttggcttttt ttcaagctct tcttttgtaa tgatagaaat
    35821 actagcaggc gcatcaacca aatcttgttc aaaaccacta gcactaacca caacatcatt
    35881 aagttgatat ttttcttctg cttttaacaa agctccagat aaaattaaaa aacacagtaa
    35941 acttttttta aattttatat ttttgatttg agtcaaatta attcctttaa aaataattat
    36001 tttgatattt aaaatcattt ttgaagtata aaaaaagaat acttttaatt aacttaattt
    36061 tgataacaat tataaataat aaaattattt aaaaaagcga agtaaaagcc taagcctctt
    36121 gataggctcc aagctttaaa attttctgca tacgatttgc agaaagttct cgtacatcaa
    36181 tattttcaag ttcatttaga gattttttta cataatcagc aatagctact gctgtagcct
    36241 ctttattgcg atgtgcacca tttgtaggct catctataac atcatcaatt aaaccttgag
    36301 attttaaatc atcagccgtt accttcatag ccttggttgc agcttcactt tttgcaggat
    36361 cattccaaag tattgcagca caaccttcag gagaaattac tgaaaaaaca gaatttttca
    36421 tcattgcaag tttatctgca acccctatag ctaacgcccc gccactaccg ccttctccga
    36481 taactatagc aatggtcggt attttcaaat cacttaattc atataaattt ctagcgatag
    36541 cttcactttg tcctctttct tcagcaccta ttccaggata agcacctgga gtatctatca
    36601 aaaataaaat aggaatttga aatttctctg caagtcttgc tactcttaag gctttgcgat
    36661 atccttcagg atgtggcatc ccaaaatttc tagcgatttt atcttttgtt ccacgtcctt
    36721 tttgctcacc aattacaatt atttttttct ctcctaaata acccataaaa caaacaatag
    36781 caggatcatc tctaaaggca cgatcaccat gtatttcgtg agcgtcattt aaaataagtt
    36841 caatatagtc aagagcataa gggcgatctg gatgacgcgc taattgcaaa cgctgaaaat
    36901 cacttaaatt cttataagtt ttagaaattt ctttttcaag atttttcttt aaaattgata
    36961 cagcttcagt atctccttta atctgagcat tgataatgtc ctcgtcaatt tgctgaatat
    37021 ttttttcaaa atctaaataa gaagccatat taatctactt ttttaaatac aacacagcca
    37081 tttgtgccac caaaaccaaa agaattactc atcaccactt ttaaatctac ttttcttgat
    37141 atatttggaa tataatcaag atcacattca tcatctttta caagctgatt gattgtaggt
    37201 ggaactaccc catctcttaa agccataaca ctaacaactg cttcaattgc acctgcagca
    37261 cccaagcaat gacctgtttg tcctttggtg gaacttataa gcgggatatt attgccaaaa
    37321 agctctttaa ttgctgctgt ttcatttttg tcatttacag gggttgaagt tccatgtgca
    37381 ttgatataat ctacctttgg attccctgcc atatttaaag cttttttcat agctcttaaa
    37441 ggcccatcta aagttggtga agtaatatga tgcgcatctg cactttctcc aaatccaatt
    37501 aattcagcat aaatcgtagc accgcgtttt ttagcctctt catattcctc aaaaactaaa
    37561 gctccagcac cttctcccat gacaaaacca tctctttctt tgtcaaatgg tcttgaagca
    37621 tgctgtggat cttcatttct agttgataaa gctttcattg aagcaaaacc acctataccc
    37681 acaggacaaa tcgcagcttc tgcacctacg actaacatct ttttagcatt tcccaaagct
    37741 atacttttat aagcttctcc tatagcatga gttcctgctg cacaagctgt aacacaagaa
    37801 atatttggcc ctttaagtcc atgctctata gaaatcaaac ctcctaacat atttacaagt
    37861 gccgaaggta tgaaaaaagg ggaaatttta cgcggacctc gctcggaaca aataatggaa
    37921 tttttttcta tgttaggcaa acctccaata ccagaagccg aaacaatgcc aaattcttct
    37981 ttatctaatt cttcactaaa tccagcatcc tgtattgctt ctcttgctgc tttaattcca
    38041 agttgtatga aacggtcaat tttttttact tctttgccat caacaacctc taatggatca
    38101 aaatttttaa cttcagctgc aatttgaaca ggaaagtccg tagcatcaaa aagagtaatt
    38161 ttatttactc cgctttctcc attgcaaatt gctttaaatg aactttcttt atctaaacca
    38221 agggcattga tcataccaat acctgtaact acaactcttt tcaagaataa gctccttgca
    38281 agaaaaaaaa ttattttttt agattgtcaa tataatttac aacatcttca attttaatta
    38341 atttttcagc atcactatct ggaatttcta cttcaaattt ttcttctaaa gccataataa
    38401 gctctacaac atctaaagaa tcagcaccta aatcttcaat aatttttgat tccattttaa
    38461 ctgcatctgc atcaatactt aattgctcta ctactactgc ttttacatca tcaaatgttg
    38521 ccatttgttc tccttcaaaa aattaaaata aagcgtattt tactataaaa agcttaaaat
    38581 atttatagtt tttcattata cttgaaaata aaatattaaa acataaagga aaaatgatgc
    38641 ttttctctaa tttaatcaaa gaaaatcaaa aaatttggaa tgcttatcta catcatgatt
    38701 ttgttaaaaa attggaagat aaaagcctaa agcaagaaaa ttttcttttt tatctcaagc
    38761 aagattatat ttatttgctt aattacgcaa aatgttatgc aagattagca cttaactcaa
    38821 atactgcaaa agaacttcgt tttgctatga aatttcaaaa ttatatagtt gaaggagaaa
    38881 tggaacttca tcgtgcaatt ttatctcttg gcattaatgc agatgaactc gatataaaag
    38941 atgaaagttt agtcaatata gcctattcgc gttatatgtt aagcgtaggt gaaaatggag
    39001 attttttaga tatgttagtt gctcttagtg cttgcgctat aggctatgca aaaataggtg
    39061 ctgaaattat aaatcgttta aaaaatgaaa atttaaaaga tcatccttac aaggaatgga
    39121 ttttgaccta tggaagtgaa aattttcaaa atgaagctaa agaatttgaa gattttgtta
    39181 attcttatac ttcaagtgtt ggtgcacaaa aattccaaaa actcagcgaa atttttcata
    39241 ctgtaacacg cttagaagtg gctttttggg agcattcttt aagaatggaa ttaaatcttt
    39301 aaacatgggc tttttgccca tgtttttatg caattttact tgcatcaata atattataat
    39361 ctaaaccaac catttcttta gaaagtccta atgcaagtcc tactaattgt gataaatgaa
    39421 taataggcaa tcttgcttta gaattagtat aatcttgaaa tctttcttga tagatatcaa
    39481 gctgcatttg acaaagtgga caaggtgtta caacacaatc agcttgattt tcacttgcat
    39541 tattgacaat ttgactagac atttttttca cagatttttc tgcaggataa gaagcatgaa
    39601 aaccacaaca atcaaggcgt ttttcaaaag gaactatttt agcccctaaa acttctacta
    39661 cactttcaaa actttttgga ttggttgaac tttctttttt accgaaagca tcttcaggtc
    39721 ttaaactatg gcaaccataa aataaagcta cttttaaatt tgaaagcggc tttttcacct
    39781 tgctttttaa attatccaaa tcctcataaa gctcccacaa aagacttgta ataggcgttg
    39841 aaccttgata tttcattcca ccttgtgcta aaaaaatatt gatgcgttct tttgcaccct
    39901 tatcaagagt attttttgct ttagttaaag ttagcataca agtactacaa gttgtaagca
    39961 ttggcatttt catctcttct gctaaagcaa tatttcttgc attagctacc aaagtcgcaa
    40021 taggatcaac acactgcgct tgagaagccc cacaacaact ccacccctta atttcattca
    40081 acttccaacc caaaataggt gcaatagctt caagtgaaat tttagattct tttgcagctt
    40141 gagataaaac acaacctgga aaaaaagcgt attctttttg catattttac tccttaacag
    40201 cagcttcttg tgccgccttt atcattttaa ccaaatcttt atgaccttct atttcatcct
    40261 cgccaaaaac atgcatagga ttcatttttc ctgcacgcat aagtttaaaa gctatatctg
    40321 ttttacccat agaacctata acaccctcag aacgcaaagc aagataaatt tcattcaagc
    40381 gtcctgaacc ttcaactaaa tctttataaa aagcttcagc atgatcaggc cctaagcctt
    40441 catttaaacc ttttttaatc gccatcactc ttaaatttgc tatatcactt actgaactta
    40501 taccctttgg acaacgatca gcgcactctt gacaatgaac acaaagccaa agtccattca
    40561 ttacgctggg ttttacatgc aacataggat ccttacctcg agagtctgcc gctgcacgcc
    40621 aagcatgagt aaaaacaaaa ggttgcatat aatcgctact atctgcttct aatttattac
    40681 actctgaggc acagctacca cataaaatac aatcccattg cttgctaata cgatcaaatt
    40741 cttcttgact ttgtttacag cccttttccg ctgaaaattc attttttgcc accatggcag
    40801 gacgaatttt tcttaaattt tctatagaag gctcccaatc cacaattaaa tcagaaatta
    40861 ctctaaaatt tccaagcgga gaaatgcgta tacttgaagg attatcatat tcttttaata
    40921 aatcttgcat tttagtatca caagcaagat aagaatgccc attcacacga actgcacaag
    40981 ccccacaaat tgcagattga caagaggcgg taaaatttaa agtaatatct tttgtttttt
    41041 tgataaaaag caaaagagag agcagagttt ttccttgtat atccttatca tcaatatcat
    41101 aactttgttc atatttttcc ttgccattaa aacgatctat gataattttc attgtactct
    41161 ccttccatca agtgaaaact cagttaccac gacatcttta taactaagtt ttaattcatc
    41221 attttctaaa tttacaatgc tatgttttaa gaaattttta tcatctcgct ttggataatc
    41281 ttctctagta tgagccccac ggctttcaag tctatttcta gctgctaaac aagcacagcg
    41341 agaaagtaaa atcaaattac caagctctac ataatctgta aaagcagtat tcatcacttc
    41401 attaggattt ggaatacgaa ttttttcata tctcgcttgt atatcttcta atttttttgc
    41461 tagaagatcg agtttttctt gagttctaaa aatccccata ttatcccaat tttgacttcc
    41521 tagctcttct cgcaattcat acatttcttg accatttccg ccattatttg taatttcttt
    41581 aaatctaacc tgccattttt gagcaagttc atgagttttt accccttttc caaaacttgc
    41641 atctttagca taatttgtcg caccaatgcc tgctaaatgc cctgttacaa ctgcatcggc
    41701 taaagaattt ccccctagtc tattagctcc atgtatagaa atgcaagaag cttctccacc
    41761 tacataaatt ccagcaattt tagtactcat atcttcaaat ttagccactt caattccacc
    41821 catagaataa tgcgccgttg gacggatagg tacaggagta tctactaaat caatattttc
    41881 aaaaagcatt gcagtgtgac gaatttttgg taaatctttt aaaatttttt cttttcctaa
    41941 gtggcgtaca tcgcacaaaa cataagctcc aagtccctcg ccataacctc taccttcacg
    42001 aatttctgtt tctatagcac gcgcaaccac atctcgcggt gcaagctcca ttttttcatg
    42061 gtaatttttc ataaaacgct caccacgatt atttaaaaga tatccccctt caccgcgcgc
    42121 cgcttctgta ataagagttc caccatttgc aactcctgtt gggtgaaatt gtatcatctc
    42181 aggatcttca aaaccaagtc ctgctctaag agcagctgcc acaccatctc ctgtggcaat
    42241 aaaaggagtt gaagttctat tataaaatat ccttgtgtat ccccctgtag caatcaccaa
    42301 agctttgcat aacacaggat aaattccacc gctttgtata tctcttaaaa cgacaccctc
    42361 gcattttcca tccacaacac ctatatccaa aagttcatga tccattaaaa atttcacacc
    42421 actactaata gcatcatcta aacaagaatg cattaaaata tgacctgttt tatctgcaga
    42481 atagttacag cgtttcttag aagctcctcc cattaaacgc tgagctactc caccttgctc
    42541 atttcttgaa aacaaggttc ctataaaatc catattaaaa atagcctttc cagctaattc
    42601 gcaaaatttt aaagccgcgt cttgatctac caaataagct ccgcctttaa tagtatcata
    42661 agcatgtaat ttataggaat ctccattaga aaaatcagta actccattaa ttccaccctc
    42721 tgccatacaa gttgcgttac gcgatggcat catctttgta gctactacaa cgcttaattt
    42781 tggattttct tttctcactg cggctgcagc acgcaaacct gctccacctg atccaattat
    42841 caaaacatcg caagaaggta aatttgcatc tttatccatc ttagatgaat catctaaagc
    42901 ataaactcca cttgaacttg caactaaagc tcctacacta atacaggctg tttttataaa
    42961 atctcttcta gaaaattcac ccatatcatt ctccttattt aaaaaaatta ataataattt
    43021 ttaatgtaag tcaatcttac ataaccgcat gccaaaaatc caaaaacaaa ctctcctttc
    43081 aatataaaat ggattaaaaa caaatttata at
//
LOCUS       DAPIWU010000003        37170 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.003, whole genome shotgun sequence.
ACCESSION   DAPIWU010000003 DAPIWU010000000
VERSION     DAPIWU010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 37170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37170
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.003"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            42..713
                     /locus_tag="RJ285_000101"
     CDS             42..713
                     /locus_tag="RJ285_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7382926.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            710..1945
                     /locus_tag="RJ285_000102"
     CDS             710..1945
                     /locus_tag="RJ285_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7382927.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            1945..2517
                     /gene="recR"
                     /locus_tag="RJ285_000103"
     CDS             1945..2517
                     /gene="recR"
                     /locus_tag="RJ285_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDV7382928.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2514..3050)
                     /locus_tag="RJ285_000104"
     CDS             complement(2514..3050)
                     /locus_tag="RJ285_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HDV7382929.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(3047..3739)
                     /gene="cybH"
                     /locus_tag="RJ285_000105"
     CDS             complement(3047..3739)
                     /gene="cybH"
                     /locus_tag="RJ285_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HDV7382930.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(3750..5465)
                     /locus_tag="RJ285_000106"
     CDS             complement(3750..5465)
                     /locus_tag="RJ285_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HDV7382931.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNHVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(5468..6607)
                     /locus_tag="RJ285_000107"
     CDS             complement(5468..6607)
                     /locus_tag="RJ285_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDV7382932.1"
                     /translation="MIDYHQIESRLSTLEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLENAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6727..8568)
                     /gene="mnmC"
                     /locus_tag="RJ285_000108"
     CDS             complement(6727..8568)
                     /gene="mnmC"
                     /locus_tag="RJ285_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDV7382933.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETIPSKRPKKLFYITVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNLQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQA
                     YKFENGCFSLKFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEKYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(8565..10544)
                     /locus_tag="RJ285_000109"
     CDS             complement(8565..10544)
                     /locus_tag="RJ285_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDV7382934.1"
                     /translation="MAKIFVFLVFAFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVIHEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTGQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(10544..11635)
                     /locus_tag="RJ285_000110"
     CDS             complement(10544..11635)
                     /locus_tag="RJ285_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDV7382935.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(11632..12837)
                     /locus_tag="RJ285_000111"
     CDS             complement(11632..12837)
                     /locus_tag="RJ285_000111"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDV7382936.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDKIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(12849..15044)
                     /locus_tag="RJ285_000112"
     CDS             complement(12849..15044)
                     /locus_tag="RJ285_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HDV7382937.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LESAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(15028..15252)
                     /locus_tag="RJ285_000113"
     CDS             complement(15028..15252)
                     /locus_tag="RJ285_000113"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDV7382938.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKFADIALYEIAENKITLEGLVETNR"
     gene            complement(15263..15982)
                     /locus_tag="RJ285_000114"
     CDS             complement(15263..15982)
                     /locus_tag="RJ285_000114"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDV7382939.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(16034..17227)
                     /locus_tag="RJ285_000115"
     CDS             complement(16034..17227)
                     /locus_tag="RJ285_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDV7382940.1"
                     /translation="MRKNILIFFCFFLFVGISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLASQNEDLLKSKSN
                     MESKLISLMAKDFAYDLPIPQGYIESEESFVAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINDSLKDYNAQLVKLQSLKQKQISEINKQKTDRTIYAKKLDDLQAQ
                     QEELRKTLNQLKIINNKEGANLNKNDTKIVKNNQQIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(17224..18030)
                     /locus_tag="RJ285_000116"
     CDS             complement(17224..18030)
                     /locus_tag="RJ285_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDV7382941.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILVTNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNLIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(18017..18682)
                     /locus_tag="RJ285_000117"
     CDS             complement(18017..18682)
                     /locus_tag="RJ285_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7382942.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(18752..19930)
                     /gene="trmB"
                     /locus_tag="RJ285_000118"
     CDS             complement(18752..19930)
                     /gene="trmB"
                     /locus_tag="RJ285_000118"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDV7382943.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLTKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLTQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKAQFKI
                     "
     gene            complement(19930..21165)
                     /locus_tag="RJ285_000119"
     CDS             complement(19930..21165)
                     /locus_tag="RJ285_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HDV7382944.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKNLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDSKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     EPSQVVSSTSKALPPQVEHLSASTDGSNKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDARAVEYEIRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(21110..22078)
                     /locus_tag="RJ285_000120"
     CDS             complement(21110..22078)
                     /locus_tag="RJ285_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7382945.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKFCDEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRHILGDGLYGYNGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            22156..23256
                     /locus_tag="RJ285_000121"
     CDS             22156..23256
                     /locus_tag="RJ285_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDV7382946.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            23310..23386
                     /locus_tag="RJ285_000122"
     tRNA            23310..23386
                     /locus_tag="RJ285_000122"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23344..23346,aa:Ile,seq:cat)
     gene            complement(23495..23570)
                     /locus_tag="RJ285_000123"
     tRNA            complement(23495..23570)
                     /locus_tag="RJ285_000123"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23535..23537),aa:Phe,seq:gaa)
     gene            23725..25068
                     /locus_tag="RJ285_000124"
     CDS             23725..25068
                     /locus_tag="RJ285_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDV7382947.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLAMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKIVVVASIFLILSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            25079..25729
                     /locus_tag="RJ285_000125"
     CDS             25079..25729
                     /locus_tag="RJ285_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HDV7382948.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(25726..26397)
                     /locus_tag="RJ285_000126"
     CDS             complement(25726..26397)
                     /locus_tag="RJ285_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HDV7382949.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGFKASMEHKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTLNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQKYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(26403..27029)
                     /gene="upp"
                     /locus_tag="RJ285_000127"
     CDS             complement(26403..27029)
                     /gene="upp"
                     /locus_tag="RJ285_000127"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDV7382950.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEV
                     SKDFSLKEIEISTPIQKTIVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEVCNFLKSQGVKKIKFISIL
                     AALQGLQKFSQTHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(27026..28261)
                     /locus_tag="RJ285_000128"
     CDS             complement(27026..28261)
                     /locus_tag="RJ285_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDV7382951.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSVEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKDVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDTIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFNEKAYFESLK"
     gene            complement(28263..29654)
                     /locus_tag="RJ285_000129"
     CDS             complement(28263..29654)
                     /locus_tag="RJ285_000129"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDV7382952.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNVKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            29719..30534
                     /gene="salC"
                     /locus_tag="RJ285_000130"
     CDS             29719..30534
                     /gene="salC"
                     /locus_tag="RJ285_000130"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HDV7382953.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLTQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(30571..31902)
                     /locus_tag="RJ285_000131"
     CDS             complement(30571..31902)
                     /locus_tag="RJ285_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDV7382954.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(31904..32359)
                     /gene="accB"
                     /locus_tag="RJ285_000132"
     CDS             complement(31904..32359)
                     /gene="accB"
                     /locus_tag="RJ285_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDV7382955.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            32507..33067
                     /locus_tag="RJ285_000133"
     CDS             32507..33067
                     /locus_tag="RJ285_000133"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDV7382956.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            33116..34120
                     /gene="pseB"
                     /locus_tag="RJ285_000134"
     CDS             33116..34120
                     /gene="pseB"
                     /locus_tag="RJ285_000134"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HDV7382957.1"
                     /translation="MFNGKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            34122..35252
                     /gene="pseC"
                     /locus_tag="RJ285_000135"
     CDS             34122..35252
                     /gene="pseC"
                     /locus_tag="RJ285_000135"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HDV7382958.1"
                     /translation="MLTYSHQNIDQSDIDTLTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVQEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNKELITKIKLLRSHGIIKKRLWDS
                     DMIELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGVGVQVHYKPTYEFSFYKKLLGEIKLRN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCE"
     gene            35273..35587
                     /locus_tag="RJ285_000136"
     CDS             35273..35587
                     /locus_tag="RJ285_000136"
                     /inference="COORDINATES: protein motif:HMM:NF027579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HDV7382959.1"
                     /translation="MLAKLERLCNKLACELFPIPRSITGQGFRDSLEILNKTLGGGGI
                     LKFHSIKSGTKVFDWIVPDEWNVKEAYIITSEGEKICDFKKHNLHLLNYSEAIDKEIE
                     LE"
     gene            35618..36555
                     /locus_tag="RJ285_000137"
                     /pseudo
     CDS             35618..36555
                     /locus_tag="RJ285_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859336.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            36552..>37170
                     /locus_tag="RJ285_000138"
     CDS             36552..>37170
                     /locus_tag="RJ285_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038850140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HDV7382960.1"
                     /translation="MKYFLEHNDKKYSDKDLIDAFYQLGIKRGDILCVHTELFKFGIP
                     LLSRNEFLQTILNCFFEVIGQEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNKYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLAKENGKYIIFGLNEGHA
                     LVHYAEEKNTTFCRYFKNFKGILINEKRKEKTITIDYYVRDLQQSY"
BASE COUNT        12391 a         6657 c         5105 g        13017 t
ORIGIN      
        1 aagattttaa agactacata aaaatttaca aggacactag aatgattaat gtgttgatga
       61 tagaagatga tcctgacttt gcacaattat tatctgaata tttagcgcaa tttaatatta
      121 aaatcacaaa ttttgaaaat cctaaaagtg ctttaaatgt gggtattcaa ggctatgatt
      181 gtctgatttt agatttaact ttacctggaa ttgatggtct tgaagtttgt agagaaatcc
      241 gacaaaaaag caatattcct attatcatct catcggctag aggtgactta agcgataaag
      301 ttgtggggct tcaaatcggt gctgatgatt atctaccaaa gccttacgat ccaaaagaaa
      361 tgtatgcaag gattatgagt cttattcgtc gcacaaaaag agttgaacac actaataatg
      421 aaaatattaa ctctgctttc aaaattgatg aaagaagaca tgagatcacc tatgaagata
      481 aggttttaac acttactcct gctgaatttg aaattttaga ataccttatc caacaacacg
      541 gatatagtgt ttcaagagaa cagcttgtaa gtcgctgtaa aaatctaaaa gataaagatt
      601 ctaaaagcct tgatgttatc atcggtcgct taagggtaaa aataggagat agttcaaaat
      661 ctccaaaaca tattttttct gttagaggta taggatataa actgatagga tgacaaaaaa
      721 ttattctatt cataccaaac tgattatttt atttgttgtt acttttttct tggtttgtgt
      781 gctttttatc gttcttttaa aaatagaagg gaatacctat aatgaagaag aaagtttaaa
      841 acaagaaaat cttataaaaa atttactcat ctcctatgaa aacacttcag gtgttgaaat
      901 aggagcttat cttggaaaca gcggttttaa cgctatacaa aatcccaatc ttgtaaaagc
      961 tataagaaat aatggacaat cactttttaa agcaggcgga gagctttgta ctctttcttc
     1021 tttaaaatat catagcaatc tttattttga tgttcaatgt aaagattttg atggcttgta
     1081 tgaagaaaat actagtgata gggtttataa tcttttattg ataggatttt tctctttttc
     1141 tttgttggtt gtttttatgt atttttctgt attaaaatcc ttagaacctt taaaaaaatt
     1201 aagaagacaa gttgccgaag ttgcaaatgg ggaacaacct gattttctag actatcaaga
     1261 agatgaagta ggcaagatcg cctttgaatt tcaaaaagct ttcaagaaaa accaagaatt
     1321 aatccaatca agacaacttt tcctaagaac aatcatgcat gagttaaaaa cccctatagg
     1381 aaaagggaga atcatttctg aaatgatcaa agaagacaga caaaaagaaa gacttatcgc
     1441 tatattttta cgcatggatt ctttgatcaa tgaatttgcc aaaatcgaaa atttattttc
     1501 aaaaaactac aacttacact ttaaacctag tcgttttagc gctatacttg aagaagctaa
     1561 agaacacctt atgatagatg attttaataa agttgtaaaa gtcgatataa gatatgacgc
     1621 tttaatcaat gttgatatgg aaattttctc tgtaatttta aaaaatctta tcgataatgc
     1681 cttaaaatac tcaaacaatg gcacttgtga gcttttttgt tgtaaagaat gttttaccat
     1741 taaaaatcca ggcaaacctt tagcagaacc tatagagcat tatcttgaag cttttacaag
     1801 agaaaaacac aatcaagtca aaggtatggg actaggactt tatatagttt cagaggtatg
     1861 taaactgcat aattttgatt tgatttattt ttatgatgat ggaaagcatt gctttaaaat
     1921 tttctttgga gataaagaaa aataatggta aaaggcctgg aaaaattcaa tgaacttgtt
     1981 gaaagttttg caaatttacc taccatagga aaaaaaaccg ccataaggct tgcttatcac
     2041 ctttgtataa ataatcaaat cgatggtatg aaactcgcac acaatataga aaatgctatc
     2101 cgctttataa aaccttgtga gcaatgcggt gctttaagcg aaaatgagct ttgcgaaatt
     2161 tgtagcgatg aagaaagaaa taaaaacatt ttatgtatag ttgaaagccc aaaagatata
     2221 ctaacactcg aagagagtca aagttacaat gggctatatt ttgttttaga tgagttaaat
     2281 gaagaaaaac ttgaaaaact aaagcaaatc atacttaagc taaatatctc tgagctcatt
     2341 tttgcattga cacatagcat taattctgat gcaactatct tttttataga ggataaattt
     2401 aaaggcttaa acctaacttt tagtaaaatc gctcaaggaa ttccaagtgg tgtaaattta
     2461 gaaaatgtgg atttaatctc tttaaataaa gctatgaatt ttagaacaaa aatttagtaa
     2521 tttttataag aaatatcggc taattcttgc aaagaaaaat ccgcaatctt ttcataagta
     2581 aaaccttcct tgcttaaaaa gtcaagtaaa gttttttcca tgattttagc tccttgtata
     2641 agctcatctg agagcttaaa actcatcgct tcaatacgct ttggcacaca agctaagata
     2701 tgtgttttag gcaaatctcc tgcaagttcc atgtattgta aggtttgaag catttctatt
     2761 tcatgggcac ttccactcca gctaatttta ttaggcatag catcataagg aaagaaaaat
     2821 acatctccta tactcgcacc ttgcgcttct atacagtcta aaacgataag tctatcgtac
     2881 ctagcaatga tatagctaag ctgcaaagcc aaagttccac catcaacaaa atctaaagta
     2941 aattcagaat gagtgaattt gtagtttttt tcaagttgtt tgcaaagatg aacgcctaag
     3001 ccttcatccg caaacatgat attacctatt ccaaggacta agaatttcaa tgcttttctt
     3061 cttttacaaa tttatatccg ctaataatag catccatagc accatcttta ccttttactg
     3121 cgttaaaaat cgccatgtaa atatgtactg gcacaaaaat cataattacc cacatcaaaa
     3181 ttctatgata agttcttaca tcggccaaac cgcccattgc agcttcaagc ggtcttaaaa
     3241 tatgatataa aagcccacct aagccctcat ggtaagtatg agtataaaga ataagccctg
     3301 taagaatgat acctaatatc acaagataaa agaaaaaata agttacaaat tgcaaaggat
     3361 tataaacccc ttttaaatgc ggatgttttc ctaagaaaat gtaaaatttt acttgttcta
     3421 tccataattt gatattaaaa atatcccata cacttctgcg ttcttttgcg cttaccttat
     3481 cgcagaaaaa caaatatact ttaaaaataa tacaagcgat taaaacaaaa cccaccgctt
     3541 gatgtactaa gcggtatttt gcttgcataa aatttacggg ttcaccgtta ctaatagggc
     3601 tttggaacac ataggaaaga taataccctg tgccaataag aatcactata gcaatagctc
     3661 ttacccagtg cgttaaacgc aaacctatgc taaattcata ttcagctttt ctttgcaatt
     3721 tttcttcttt gttttgcatg aaagcctcct tataaattga cattcacttt atattcactt
     3781 agattattgc ccttagtatc cattacatgc accgcacaag caatacaagg atcataagag
     3841 tgaatttttc taatgatttc aagtggttgt tttacatcag cgattttaag tcctatcaaa
     3901 cattgctcat aacttccgcc tacgccattt gcgtcttttg gacttgcatt ccaagtagaa
     3961 ggcaccacag cttgccaatt ttcaataaca ccatttttaa ttctacacca atggcttaat
     4021 gttccgcgtg gcacatgccc catatagcgt cctttgtatt ctttagaatt atcgatcaca
     4081 taaggagcac aagtactctg gtctactttt aaattttcaa ctaaattatt aaacgctttt
     4141 aaagcattgt ttgcaacgat ttttgcttca atacaacgag cagctgttct tccaagtgta
     4201 ctaaatacag catttaaagg aagtcctgtt tcttttaaga actcatctac tacaggaaca
     4261 acattttgat tacctttagc ataatttaca acgatatttg ctaaaggtcc tacttgcata
     4321 gggtttcctt catagcgtgg agctttaatc caactatatt tacccttagt atcaaacact
     4381 ttagaatgaa catgatttcc atgatgatct acgctttccc catctacaag tcctgtataa
     4441 tttggatttg ttttgccgtc ataaggatgt aaaggttcat tgtctgcata ccaagaatga
     4501 gttgcctctt cagtaatctt atcttcttct acttcataaa ccttgcttaa atctccattt
     4561 ttgataatac cactttcaaa aagccattca tctcttccga tttgaaattc tttaaaggtg
     4621 taaagattat ttacccctat atcatttaaa acacttgctt catgtgcata agcttttcct
     4681 gccatcacaa gatcaggata atacgcacga ttaacaaagt cttgcacttc ttggaattta
     4741 accatatatt cacccattct tgcaggatca agtaaatcca taacgcaagt tacaccacca
     4801 acggttaagc tttgtggatg tgggttttta gctccaaaaa tcgccataca ttgagcaatg
     4861 attctttgaa ttcttaaaca ttctagatag tgagaaagaa cgattaaatt ttgctcagga
     4921 gttaaacgat aagttggatg accatagtac gcattagcaa aaggtcctaa atttccttta
     4981 tctacaaaag ttttaagtct ttgttgcact tcaagaagtt tatctgcacc tgttgcataa
     5041 ggatttgaag tgtatttaaa agcttcatcg cttgcttttt taacatcagc acttaaagca
     5101 cttaccacat cagcccaatc aagcccatga agttgataaa aatgcacaat atgatcgtgt
     5161 aaaaataaag ccgcattcat taaagttctt gttaaaagcg catttaaagg cggagtaata
     5221 cctaaagcat tttcaacagc aactatacct gctttataat gtgaaaaagt acaaactccg
     5281 caaattcttt gcgtcataaa acccgcatct cttggatcac gcccttttac tatggtttca
     5341 ataccacgcc acaaagtaga gcccgcataa gcttctttta ccacattgtt atcatcaaca
     5401 acaacctcaa ctcttaaatg cccttcaatt cttgtaatag gatctacgat tattttttga
     5461 ctcattttta ttccttatct ttttgcatgg aagatataac tgcgtgtgct gctatagcaa
     5521 cgcctgtgag tgtaagcaca cctataccaa ttttatctga aacactatcc gcacccaaac
     5581 caaaaacagt atcaaattta cgactagcca taggctcttc aaaaggtccc atagtatccc
     5641 aaaaattagg ctcagaacaa cctatacaac catgccctgc ttgaataggc caagaagtgt
     5701 gctggttaaa tctctctctt gagcagttat taaaagtata aggtccttta caacctactt
     5761 tataaagaca aaaaccttgt tttgctcctt catctccaaa agcatgtaca aattcacccg
     5821 catcaaaatg tccgcgtctt tcacaaagat catgaattct taaaccataa gcccattttg
     5881 gtctattata cacatcaagt gctggtaact caccaaataa taaataatga agtacattac
     5941 ccactatatt tttttcactt ggaggacagc ctggaacatt gatcacagtt ttacttgtta
     6001 ctttgcttaa aggctgcgcg ttgctaggat ttggtcttgc ggcttgaatt cctccaaagc
     6061 tagaacaggt tcctatagca aaaatcgcca aagcattttc acttgccatt tttgaaagct
     6121 catagcctgt ttttccatgt gcacctatgg ttaaaaaatg ctccgtatca cccataggga
     6181 taccaccttc aaccattaaa atgtatttat ttttatgctt ttgaatggca ttttctaaat
     6241 tttcttcagc ttgccaacct gctgcagcca tcactgtttc gtgatattct aaagaaatat
     6301 aatcaaaaat caaactatca atcgttggag tatcacttct taacaaactc tcactacagc
     6361 ctgtacactc agccatatga agccacacaa caggaagcct atcagcaagc tcagcagctt
     6421 ttgccaccat aggagtaaaa ctcgctggca aagccaaaaa tgccgtcata gcacctgccc
     6481 atttcataaa atcccttcta gaaaaacctg acttttctaa tgcttttgta atactatcat
     6541 tgtctttcaa agaaggaagt ttttcaagag tcgataaacg cgactctatt tgatgataat
     6601 caatcattat atttcctttg taacatgaaa tttattctct ataataataa aataaaggaa
     6661 gttaaaataa agttaaaaac ttactatcat aagcaaatat tagcatcact cttaattaaa
     6721 gcttaatcat aagccttttt taagtttgcg aatcaaaaat cttgcaggat gaatagcgtg
     6781 gatgtatttt ttttctaaac acaagggttc attatttatc aatgcacaca aataccttgc
     6841 cgctaaaaca cttgtactaa aaccccttga cccatgagca aaattaaaat acaaattaca
     6901 agacatttta gctggttttt gctccttatt ttttgtccat aataaagctt tatatttttc
     6961 tttataaaac gcttcatcat aagcatttcc aactatcata aagcgatcac tcgaataaga
     7021 tctaaaacct actttagaac ctatgatttc taattttgta tttttatcca taaaatcggc
     7081 tatattttct atattttgtt tatcatcttc ttcttttgat tctaaacttg cattaagcct
     7141 atcataactt gcaccaatta cttgcaaatc atcttttaca gggcaaatat aagccttaga
     7201 agataaagga aatggggtat ctaaaaaagg ttttagatgt gtaacttgac ctcttacttt
     7261 gcttaatttc atctcatcat aaaaaacaaa gtcttttgca tctgcaccca tagcataaat
     7321 caaaaccgca taatcacttt taacaacatc atttttaaat tttaaactaa aacacccatt
     7381 ttcaaattta taagcttgaa attcatgatt aaaatatata caagctttgc ttttttcaaa
     7441 aagattttta accaattttt ttggaaaaat cactccaccc tcttctaaaa aagcttgatt
     7501 ttttgaaatt ttaaacaaaa cattttctct ttgcgtgtca aatctttctt gcattaaatc
     7561 attatgtgca aactccacca cacccttaaa ttctaaatct aaaatttgtc tataaaaacg
     7621 acttgcctct ataaaagaaa gctctgaaaa ctcccctaaa tttaccttag gctttaagat
     7681 taaagagctt aaaattccac tttcatttcc acttgcaccc ttgcctaatt ctaaatgttt
     7741 ttcaaaaata tctatttcaa aacctcttaa actaagctca taagctaaaa cagcacttga
     7801 tatacctgca ccaataatag ctactttttt attttttaaa gatgaaaatg ttcttgaaaa
     7861 atacgcttct ttgtctttaa actcaagctc attttccaaa taagctttaa tcatttctct
     7921 ttttctaaaa cctttggttt tttctactct aaaaccatat ttttttaaat ttttttgcaa
     7981 aaaacttgcc gaagaaaagg tgcaaatttg tgtatttttt ttagaaagtc ttgccacttc
     8041 aaagattaaa ttttcatcaa acatttgcaa gtttttattt ggagaaaatc catctaaata
     8101 ccaaacatca gctttaaaat ccaattcttt taaaacagct atatcttcaa aaacaagatc
     8161 taaaaaacaa tcttcaaaat aaaaacgata aattccttct ttagccttag gataaaattt
     8221 taaaaattgt tctaaaagct ctttaaactc ttcataaaat tctagttttt gataaatttc
     8281 tcttaattgt tctttttcga tataaaaagc ttctacggta atataaaaaa gttttttagg
     8341 acgcttagaa gggatagttt ctaaaaagcg tttcaaagta agaaaaaaat ttaaacctat
     8401 accaaaacca ctctctgcga taataaaatt ttcttgattt ttccattcaa aagaatgagt
     8461 gtaaacaaat ttgctttcat ttaagccatc tttggaatta aaataaaaat catcaaaatc
     8521 caaagaaaaa ggagtattat ccttaaaaat tagcttagct tttttcatcg gttgttataa
     8581 aaataactct caactccatc ggcaataccc ttaaccaata aatcttgaaa agctttattg
     8641 gcgattcttt tgccttcatt tggatgtgta atatagccaa tttcaatcaa aattgcaggc
     8701 atttgcgcac ctactaaaac ccaaaaaggt gcttctctta caccgccatc tacaatttta
     8761 tactttttgc gtgtttgagt gagtatattt ttttgtacat caatggctag tttatttgaa
     8821 gcaacgattt tttcacgatt taagaaattt aaaatacttt gttttgagaa ataattaatc
     8881 tcttcaaaat ccccttgatt ttctttttct gctgcctttt tacttctttc acttcttgca
     8941 ggacttaaaa agaaagtttc cacgccttcg ctacttttgg cttttgtggc atttggtgct
     9001 gcgttagcat gtatagaaat aaacaaatcc gctcttttat cattggcata tttggttcta
     9061 tcacgaagat tgataaattt atccgaactt ctagtataaa gcactttata accgcgtttt
     9121 ttaagttcat ttccaagttt taaagccgta cttaaaacta tatctttttc ttttaaactt
     9181 ccttttttat cacttaaagc accgctatct tttccaccat gccccgcatc gataaccaca
     9241 agctttcctg atttgtaatt tgtatttaaa gttttactag aactttgagt tgcttttttg
     9301 tttgcatttt gatttgtagt ttgtatataa aaacctaaag tgagattatt attatccaac
     9361 tcctttaaaa gtttaaattc tttaggagca ctcaaaacca cacgaacggt ttttggattg
     9421 tattgagtaa ctgtaatcac attttgtcca aaagtaaagc tttttctatt accttctaac
     9481 acacccttaa aacttacaac atatcggaat ttttgatctt tggtatcaaa tactgctatt
     9541 tctttttcat ctaaatcatc gcttaaattt aacaccacag cattagaaat tttatccaca
     9601 tctaaaacat ataaaggttc ttgattttct ttttcattat tggttttttt atcttgtttt
     9661 tttgtttcta aaactttggt tttaatttct gttttttgat cttgcttttt ctctgaaatt
     9721 ttactaactt gcccagtctt tttttggcta gtagtttctt ttgaaaaaat tattttttct
     9781 tctttaaaag atatatcaat aggaattttt tctttagcat aaaccactat gcgtatggtt
     9841 ttgggattaa attgtgaaat cactaaacga tagtcatcaa atttaaactc ttttttaccc
     9901 ccttctaaaa ccccatcaaa atcactaata aaacgatagt ttcctttttc gtctaaagca
     9961 aaacttttta attgatcctt atccaaatct gcatttagtt caaactctac accttggttt
    10021 gttttacttg actttaaaac ataaatttta tcatcgcttt ttgctttaga aacgatactg
    10081 ctctttggtg cttgcgaagt tttagaattt gttttttctg tattttttat ttgttcgtta
    10141 gatgattttt tttcattttt ttgaactgtt tttataggtt caaaagttga tttttcagtg
    10201 tcttgagaaa tattttgaac cttaatatct ttaataacag cctttcttaa agcattaata
    10261 cttgcttcac ttataccact ttcttttaac tcattagcat atgacttgtc atctaaattt
    10321 aaagtatttg aactgatgat caatcttttt aaaatttcaa ttttagtttt ttcatcttca
    10381 tgaataacac tttgtatata aaggcttttg agctgatggt gaaattttac ttgcacttca
    10441 cttttagaac cgataaaatt tttatcaaaa tttgcaagtt cattttcata agctccaaaa
    10501 agagttgtga aagcaaacac taaaaataca aaaattttag ccattattca ccattaacca
    10561 atttttccat aagttcttta acactgataa gcttatctaa acgatatcca tttgcacctg
    10621 taaagaaaag tcctgtttct tttttgcctg accacgcatc aaaaagccta tctgctatac
    10681 aataccctac tttagtcgcc tcttttccac gtccacaagg cgctacacaa ttgcttatac
    10741 aattaatctt tggacccatt cttttatcta ccaaatttaa aagattggtt ctaactccac
    10801 gagcaggata gcccacagga gatttaataa gctctatatc ttcttcttta gaagctagca
    10861 aaacgctttt aaactcttca ctcgcatcac attcaaaagt tcctatgaaa cgcgttccca
    10921 tttgaacacc actagcccct aaagaaatag cattttctat atctttttta tcccaaattc
    10981 cacctgcagc aatcacggga aaagaccccc aatttttagc ctcttctacc acaggagcga
    11041 ttaatttttc tagctgataa tttggatcta aacactgctc ataagtaaaa ccttgatgac
    11101 ctccactttt tggcccttct aaaaccactg catcaggcaa gcgattgtaa cggctttgcc
    11161 atcttttgca aataattttt aaagcctttg cagatgaaat gataggcact aaagccacat
    11221 caggaaaatc tgcagtaaat tcaggtaaat ttgtaggaag tccagcacct gaaacaatca
    11281 cattaaaacc aacctcacaa gcatcgcgtg ctattcttgc ataatcatta cttgcacata
    11341 agatattaca ccccaaaggt gcatcgccac aaacttttct tgcattatta atcaaagctt
    11401 gcaaaccctt gcgtgagtaa aaattttcac ttccataagg cttagcattt aattctttac
    11461 ttgcatactt tctttcttca taatatcctg ttcccacaga agaaataatc ccaagtccac
    11521 catttaaaga aactgcagaa gctaatctat cccagcttat gcctagtccc attccccctt
    11581 gaaaaatggg atattttata gtatgttttc ctatttgtaa gggttgtaaa ttcattcttt
    11641 tacctttaat tttgcaaatt ttcttttacc tatttgtaag atgtattctc cttgttctaa
    11701 atacatttgc tcgtcgctaa ctttttgaga atttacactt actgcattag cactgatgct
    11761 tcttcttgcc gcagaagtag aactttccaa accacattca accaaagcct tagcaagcca
    11821 aatttttcct tgtatttcaa actcagccat atcacttggc aaagcatttt gagaatgaat
    11881 tttatcaaat tcagacttag cattattagc ctcttctttg gagtgaaaac gctctgtaat
    11941 ctctaaagct aaattttctt tagctttttt aggatgtaaa ttgccttgtt ctatatcttt
    12001 ttttatttgc gcaatttctt ctagactttt ttgacttaaa agttcataat atctaaacat
    12061 caattcatca ctaatactta aaattttagc atacatatca ttagcttttt ctgtaacacc
    12121 aatgtaatta tttaaactct tactcatttt gtttacaccg tctaaacctt cgagtaaagg
    12181 catcataatc acagcttgtt cttttcctat gttataaact ctttgaagct gtcttcccat
    12241 caaaagatta aatttttgat ccgttccacc catttcaata tcgcttttta aagccacact
    12301 atcatatcct tgaagtaagg gatataaaaa ctcacaaatc gaaataggac tttgctcttt
    12361 aaatctcttg gtaaaatcgt cacgctcaag cattctagct acactaaaag ttgaagtaag
    12421 ctctactata cccgcggctc caagttcatt aagccaagta gaattaaact taatctgtgt
    12481 tttttcttta tccaaaacct taaaaacctg cgtttcataa gttttagcat tgattaaaac
    12541 ttgctcttta tccagctttt tacgcgttgc actttttcca cttggatcgc caatttgtcc
    12601 tgtaaaatct ccaatcaaaa actgcacaat agctccatgt ttttgcaaaa aagccatttt
    12661 tgttaaaacc acgctatggc ctaaatgtaa atcaggcgct gtaggatcaa accctgcctt
    12721 tataaagaaa ttttcaccct tttcataata atttttaatt aaattttcta ttctttcttc
    12781 atcaataagc tctgcacaac cacgcttaac ttctgctaat atttttttta tatccataat
    12841 aaaccttttt aaccttcttt ataagcatca tttaaagatg taaaatctaa aattttacaa
    12901 cgagatttta acctatcctt gacactatct ggattgatat tatcaggaat ttccattgta
    12961 atctcaaaat aatctaccgc cgaatttaaa tcacttgata aattaattgt taataaattt
    13021 atctgcattt tagctaaaaa tgccaaaaat tccgctaaaa cacctttttt attttccaaa
    13081 gaaaaaatca atttataaga tttagggatg ttagaatccc attttataaa taccatatct
    13141 tgattattat ctatcatttt atcagctcta tcgcaaagct tatgatggac aatagcgtta
    13201 ccacctttaa caaaagctaa aacagcatcg cctctttttg gatggcagca aaaatcaaaa
    13261 tccacattag cgattttatg gttacaatat agagtaaaat ttcctatttt ttgttcttta
    13321 atctcatatt tatcaaacca atatgacttc ttggcgtatt ttttaagacc attaactata
    13381 tctttcaaat aagcactatc tgttgctact tgtctaatac gtctggctaa attttctttt
    13441 tctatccaag tttcaattct gtttttatca actccaaaaa taaaacttaa catattaata
    13501 gaacttgcta gattaatctc tctgattttt tgcttacaaa attcccttat acttgctttt
    13561 gcttttcctg ttttaacact atctatccaa gaacagcgat aaaatttatc attgctagta
    13621 accactcgca caatatcgcc atttttaagc tcggttaaca aaggcacttt aatacgattt
    13681 acataagcac tttttgcatg aagccctact ttggtatgca cttcataagc aaaatcaaga
    13741 accgttgcac cacgaggcaa agtgaaaatt tctcccttag gagaataaac tgcgacatct
    13801 tcaacataaa gactatcttt agcatattca taaagttcaa tagcattata atcttctgca
    13861 ctttcaagat tgtttatact ttgcattgaa atatctgtaa gccaatcaag acgaggcgca
    13921 accacactgc catcttcttt atatttccaa tgcgctgcta taccaaattc cgcaatttta
    13981 tgcatatcaa aagttcgaat ttgtgcttct ataatacttt tagcatcaaa aagtgtggta
    14041 tgtatggttt gataaccatt ttgtttaggc aaggctatat aatccttaaa acgcgaaacc
    14101 aagggattaa aatgtgtatg taaaattccc aaagctaaat aacaatcact tactttttca
    14161 accaaaattc ttaccccaag caaatcaaga acttcttcaa taccaatgcc ttttctttgc
    14221 attttaagat aaatagaata gctatgttta atgcgttttt gaatttcaaa actaccttgt
    14281 ctaaagccat tgctcaaaaa taaaagttcg attttggaaa taaattcatt taaacctaat
    14341 tgcatttctt gattattgga gttgatataa ttgtcaataa gcttatactc atctggcata
    14401 agatatttaa aactaagatc ttccaaataa ttttttatgc ttgaaatacc aagtctatgg
    14461 gctattgggg catatacaac taaagtttct tcgctgattc ttttttgctt atcttctctt
    14521 agaatatcaa gagtaagcat attatgcagc ctatcgcata acttcacaat caaaacccca
    14581 acatcttcaa tacttgctaa aagcatattt ctgaaagtca aggctgattt agttaaactt
    14641 tttttagatt ttgatgaaat gagattatct tctctaattt ctataatttt agtaagccct
    14701 aaaacaagtt ttaaaacctc agaaccaaac tgctctctaa gttcttcttc agtacagttt
    14761 gtatcttcga tcacatcatg caataaagca gctaaaatat tgcttttatt ttcacttaaa
    14821 aatccaacca gtgttgctac taaaatagga tgtaccgcat aaggctctcc actttttcta
    14881 aactgccctt catggcaaaa tatacagtaa tctaccgctt tttcaagaat ggcatcatgg
    14941 ccacaaattt cgaaaagcaa agccttagca gcttctaaat ctttacaatt ttttacatta
    15001 tcgattaatt gttcaagcaa taattcttca tcgattggtt tcaactaaac cctctaaagt
    15061 gattttattt tctgcaattt catataaagc tatatctgca aatttatttt tatttttatc
    15121 aaagtctacc aaaggggttg ctccgttcgc caattgttcc gctctttttg ctaccactaa
    15181 agaaaggcga tatctatcat tacccatttt ttccaaagct tttgccgcta cttcttctat
    15241 tcttttatcc ataattttct ccttaattat ttttaacgat tgaacaaagg ctagtatcac
    15301 cttgtatgat tttaagtaaa ttaccctctt caaacatatt acaaaccaca ataggaagtt
    15361 tgttatcttt agctaaagct atagctgtat catccatcac tttaatatta tcttgcatag
    15421 cctcatcata acttaaagta tttaaaaata ctgcatcatc aaattgtttt ggatctttat
    15481 cataaactcc attaactttt gtagctttta ttaccatatc tgcatcaatt tccacagctc
    15541 ttaaaatagc tgttgtatct gtagtaaaat aagggtttcc agtacctgcg gcaaaaacca
    15601 caacacgacc cttttctaag tgtctttgtg ctcttctcat aatataagtt tcacaaaatg
    15661 cttccatctg aatggcactt tgaaccctaa cttcaagtcc agagctttcc aaggcttctt
    15721 gtatagcaat agcattgata accgtagcaa gcatccccat atgatctcca cttgtccttt
    15781 taatcaatcc acccttagca gcacttactc cgcgaataat attaccaccg cctataacta
    15841 tgcctacttc tatttgattt tttataagtt ctttaatctc tgaagctatg aattttaaaa
    15901 tagaattttc tataccaaag ccattttcac ccgctaaagc ctctcctgaa aattttacta
    15961 aaactctttt tctctcttgc attatttctc cttatttaac ttgaaattat attttaaatt
    16021 ccattaaatt tagctaattt aagctaatga gttccaaagg attgatatga aaattttttt
    16081 gagttacttc aaaagtaaga tcatttttta ttctacccac tacggcacct tttttaatat
    16141 tcttaccaac tttaatatta ggagcaatct tatctaaatg tgcgtatatt gtatgtatgc
    16201 cattatcatg ttcaacaata acaactcgag ctaacatact agtatcttta gcaaaaacta
    16261 tttttccatc tagcacattt ttaacaactg catcgctttt attgcttctt aaaactacat
    16321 tctcgttaaa aattttaaga ttgtaaacag gatcaacata atttccaaat ttttgcttca
    16381 cagtaaaaga atccaatgga gctatggttt tttttcctgt gtaacgcttg actgaacttc
    16441 cttgatagct tgaacctaat tgccttattt gttgattatt ttttactatt ttagtatcat
    16501 ttttgtttaa atttgcacct tctttattat taataatttt taattgattt aatgtttttc
    16561 taagctcttc ttgctgagct tgtaagtcat cgagtttttt tgcatatatg gttcgatctg
    16621 ttttttgttt attaatttcg ctaatttgtt tttgttttaa actttgaagc ttgactaatt
    16681 gagcattgta atccttaaga ctatcattga ttttcttaat ctgagcttgt ttatcatcaa
    16741 taagtctgct tactccctca taatctttag aaattttaaa aatttcttca tttaaaactt
    16801 tgtttaaact ccctaaaatt tcaaaagcca caaaactttc ttcactttcg atatagcctt
    16861 gaggaatagg taaatcatag gcaaaatctt tagccatcaa agatataagc ttactttcca
    16921 tatttgattt acttttaagc aaatcttcat tttggcttgc aagggtgttt aactcttgat
    16981 tttgagcctt agcacttgct tcaagcttag aagtttgtga atttaagctt tcaatttgca
    17041 aacttaaatc tttcaaactt ttttcaccat ttaaaatatc actagccaaa tcttcaagtt
    17101 ttttatttag ctgttcttgt atgcgtttat tttcttctaa actttttgtt ttttcattta
    17161 tagcgtttgc taaacttata ccaacaaaca aaaaaaaaca aaaaaagata agaatatttt
    17221 ttctcatctt ttaaccttaa acataaccgt atttacacac aacaagcaaa taaacaaagt
    17281 agctaaaaaa attaaagtca aatgtaaaat aaaattaata ggtggaaaaa taatatctac
    17341 agcctttaaa ctttcttgga taatagaaag atcaaaaatt tgggtaaaaa aggcaagtaa
    17401 aataacaaaa gcaataaaac aatcaaccac aaccacctta taaagcataa aagatctaaa
    17461 ccaaaacgga gctccaaata aacacataat ttcaatacga tcggtatgtt cataaagcca
    17521 aattctcatc tgttttaaaa acaaaacaaa ggcaagtaaa ataatgataa acaaaaataa
    17581 ccaaaaaaca aatttcatca aaataagcaa agagtatatc ttatcatggg ttttggaaaa
    17641 agtttcaacc ttactaacac ctacaatatt taaaagttga tttttaatca aatttagttc
    17701 attttgatcg ggtaaagaat ttaattttaa agtataaaat tttggcagag aatcttttaa
    17761 aactttcaaa ttcttttcag aaacatcatt tttcaaacga tcaattaaat ccttaggatc
    17821 taaagattca agtccagcaa aaaatggtac ttttgttttt actacattct gatcaagttc
    17881 agttttgctg acaactataa tattataatc tttattaaca agttcttcat aatgctttaa
    17941 agttgcattt gtaaccaaaa taaattcaaa agcaaacatc ataaaaagca aaggtaaaat
    18001 taaagataaa tgtgttttaa aaaatttcat tcatttttcc attttctata ttaaaacgac
    18061 gataatccac tcttaaatta ctaggaattc tatgtgttac cactataaca caagttccta
    18121 aaagctctct agcagacttt aaaagagtcc atataatatc agaagaatac tcgtccaaat
    18181 ttcccgttgg ctcatcgcaa agcaaaagct ttggattatg agctaaagcc ctagccatag
    18241 cgacgcgttg ttgctcacca ccgctaagtt gattaggcaa tttatctgct ttaaaagtta
    18301 aatttacatg ctttaaaagc ttagtagctt gatcatggca tacttttttg ctataacctt
    18361 taatcattaa aggcaacata acattttttt caacactata ttcttgtaca agtttataat
    18421 cttgaaaaat aatccctatt ctttgacgca attttaaaag ttctaaattt ccaattttat
    18481 tcatcaaaga tccacatact tcaagcttac cagaaatagg ttctaaatct ccataaaaag
    18541 actttaaaag cgtactctta ccactcccac ttttacccgt aataaaaaca aaatcatcat
    18601 ccttaaaagc aaaacttgct tctttaataa ctagttcatc ataacctaaa gtaagtttat
    18661 ttgcttggat taaattaggc atcctttttc cttaatttcc ctttttaaat ttttaaatta
    18721 tgctttattt ttgcttaatt ttcaagaaaa attatatttt aaactgagct tttaaaattt
    18781 cttttaattc atttatcgct ttaatatttt cttgaatttt aaatggttct ttaaaagcaa
    18841 aatcgatcgt tttatcaaga tgcaaataac aatgttcagg cttattaaaa gctccaaaag
    18901 caacctttaa aagcaaattc tcatcttgtt tatagatgct ttcaaaatgc aagaaaaaat
    18961 catctttttt tatagtaata tttttaaagt tctgctctat ttttttcaaa tcctctttag
    19021 aaaattcaac cgatgagaga ttaaattcat ttaactcata gtttttacac tcttggttaa
    19081 aattccacac ccaaagatca tatatatttt tttcttgctt tttccatcta tcttcatatt
    19141 tgcttgaaat ttctaaattt tcattttttc taagactaaa ttttggagca ggaaaagtta
    19201 aaaattgttc tagagtaaaa ttaaaatact caaaactatc tgttctaagc tcaaaacgac
    19261 cattttgggt taaaacccta gcacattctt tgcaaaaatc tttcccaata actcgcctat
    19321 gaggcttttt gtcccaagga acagggaaat gtaaaaaaat cttttcaact gattttgatt
    19381 ttaatacact caataacaat ctcgcatcac tttggattag caaaatatta tttacatttt
    19441 gtgctttagc aagtttagcc acttgagtta aagctgggtt gtaaatttcc acccctaaaa
    19501 ttaaaacatt tggattttct tttgcttgat aaagcaaatg tcttcctgat ccaaagccta
    19561 tttctatata aattttacct tgaagtctag ataaaagctc atcaaaatta tcaacgataa
    19621 atggtgtttt ttcaattaaa gcattatttt taagtccaaa agcttcattg ataatatcct
    19681 cacaaaaacc ttctttaaag atttttaaag ccttttgcaa ataacctatt ttagaaggtt
    19741 ttgtatgttt atcgccttta atcacaaaac cattttgtgc ttttttaatc tgcagaaaaa
    19801 aactctcttc ttgaaccttt gtataaataa gactaacatt atcattctta gtaagccaaa
    19861 gaaattcaac atcatcctta ctataaggca gatttatttc tttgatcttt ttacttttaa
    19921 aatttggcac tactgagccg ccttaacttt gcttgaaggt tctgaacgaa gtccagctga
    19981 atcaatagca ataacttcat aactatattc cacccctggt aaagctttta catcttttaa
    20041 tcgcttttct ttaatgcctt taaaaactgc attttgctcc ccaccatagc gtcttatttc
    20101 atactcaaca gctctagcat cattatcact ccattctaaa tttatccctt cacttgtgct
    20161 ttgggccaaa ataatactag gagccaaagg gttacccaaa gttttacctt ctacaccatc
    20221 ttttggcata ggactttcaa gaccatcttt atcgaccatt gttactttat aatacttgct
    20281 tttacctgct ccttctacta tatcctcata agaattttta tcagtctttg ccaaaacact
    20341 aaaaggaagg aaacttgagc tcgtagaata aactttataa taagaaaaat cttcatacgt
    20401 aggagcatcc caagttaaaa tgattttatt agaaccatct gtactagcac ttaaatgctc
    20461 aacttgagga ggtaaagcct tgcttgtaga acttacaact tgacttggct cactctttat
    20521 cccattaaaa ctcacagcaa taattctata acttgaattt tcattaggtt ttaaatcact
    20581 atcgatgtat tcagcgttta aacgattttt tacttctgca atttttttaa attctttatc
    20641 atcacctttg gttctttcaa taatataaga atcaacccta aaatcaggat gcggacgcca
    20701 aataagttta atacgattag gcaaattagt cacagcttga acaaaaggaa cagcttcaag
    20761 tcttggagct gtgctcactt ctataacctt gctatcttct gaaatttgtc cttgttcatt
    20821 aaagcttttc atcatataac gatacttagt accaggctct aatttagtat ctacataatg
    20881 agtttgaaac ttatctttaa tagtacctac aagtttaaaa tcaggatttt catcgctaga
    20941 acgatacaga taaaatcctt tgatattttc attatataaa ggttcccatt caaaagcaat
    21001 gttactcata tcactaagat tttttaaact ttcaaccttt ggcaagctct catttacagc
    21061 aggctctttg cttgaagcta gcgaattcat ttgcgaaaca ctacaagcac taagcaaaag
    21121 agttaaaaaa ctcaagtaaa aactcaagcg aaatcttttc atcattctct cctaaattaa
    21181 tttgttcaaa cataatattt ttaaaatctt ccatcaaagg tgctttaaca aaaatttgct
    21241 ctttggtttt tggatggata aaatacaaaa aataagcatg tagcattatc ctgcaatcat
    21301 acttaccgtt ataaccatac aaaccatcac ccaaaatatg gcgatttaaa ctagctaaat
    21361 gcgctctaat ttgatgagtt cttcctgtga aaagcttagc agccatcaaa gttaagtttt
    21421 cagtttttac tacatttata aaagctgatt ttgcgttttt actgaattta ttttccttat
    21481 ctatggctat ttttttaata gcattagaag gcgaacgcat taaaaatttt tctactataa
    21541 ttttatcttc ttttagtggc aaatcaatta acgcaagata aattcttccc atgcttttat
    21601 ctgcaagctg ttcgcttaat ttttgatgag tgaagttatt tttcgctatt agtatagctc
    21661 cgcttgtatc tttatctaat ctatgaacaa gaccagctct tatctctcct cctaaatttg
    21721 ataaagtata ttttttttct attaaccaat ccaccaaagt ggcattttta acgctacttg
    21781 ctccatgaac gactaaattt gaaggtttat ttaaaacaag caagtcttca tcttcgtata
    21841 acacatcaat atcaaaatcc acttcaaact gaggttttat ctcatcgcaa aactttaaac
    21901 ttgcaataga aataatatca ccatttttaa gcttaaatga atttttatct tgaattttat
    21961 cattaacctg tacacaatct ttttctataa gtaaagcaac ttgattgcga ctttggttta
    22021 attttttagc caaaaataca tcaagccttg aattttcatc tactaaaaaa gtttgcattt
    22081 tttccttaga ggttttgata aatttaaaat tttagtttat aattatagct ttatattacc
    22141 aactgaaggc aaattttgtt tagattagat agaagaattt taactcattt tgactatatg
    22201 caacccattt tatttttacc cataattctt atttcatttt tcttaatctt tgaagctaat
    22261 ccttttttag cagaaaaaca gtttgtttat gcctgtgtgg gattgtttgc ttttatggtt
    22321 tttttcttct ttcccataag gaaatttatt tggattattc ctgttgctta ttggattaat
    22381 atttttttat tgctaagcgt agatattttt ggggttgaaa aattaggtgc taaaagatgg
    22441 cttgaaattc cttttactca ctttactata caaccttctg aaatttttaa acctagtttt
    22501 attttaatgc ttgcctatct tatttatcaa aatcctcctc caaaaaatgg atacaaactt
    22561 aaacaattca tcaaacttag cttttacatc atcttgcctt ttttgctaat tgcaaaagaa
    22621 cctgatttag gaagtgctat ggttttacta cttgttggtt ttggagtgct ttttatcatg
    22681 ggagttcatt ataaaatttg gttaagtatt gttatagcta taagtgttag ctctcctatt
    22741 atttatacac atcttttaaa accctaccaa aagcaaagaa ttcatgattt tatttcagaa
    22801 aaaccaagtt atcaagtagc ccaatcaatg atagctattg gaaatggtgg tttaaccgga
    22861 aaatctcaag atgaagctac gcaaactcat tttaaatttt tacctatttc aactagtgat
    22921 tttattttcg cttacatgat agaaagattt ggatttattg ggggattgac attaattata
    22981 ttttatattt tacttatttt tcatctactt agtttaaatt ataaacttaa agatgattat
    23041 tttgctagag ttgctattaa ttgtgttgca ttatttattt ttatttatgc ggcagtaaat
    23101 atttcaatga ctataggttt tgcaccagta gttgggatcc ctttgccttt ttttagttat
    23161 ggtggaagtt cttttactat ttttatgatt ttttttggaa ttttacagca tttaatcact
    23221 tttagatatt tttggacgga tataaaggct aaataaaata tttttaagca ttaataagat
    23281 ataattttat cttttaattc aacttaggcg gatttatagc tcagttggtt agagcaaccg
    23341 gctcataacc ggttggtcgc aggttcgagt cctgctaaat ccaccattct acatataagc
    23401 tatagactct ttctttaaaa aataactttt agttctttaa atatttcaat cttatataaa
    23461 aaaagtatgt gatgtgattt tttgaaagat aaagtggtgg ttagaggcag aatcgaactg
    23521 ccgacacgca gattttcagt ctgctgctct accgactgag ctatccaacc acaatgtttg
    23581 ataaagtaaa gtttgataaa gtaaaaatgt aattgtatct ttttttcttt aatttaagtt
    23641 taaatacaaa aataaaattt tatttccctt aaagttttaa taagatagaa tacccgcttt
    23701 agatcattat caaatggaaa ttttttgaaa caatttggac tagatagacg aacttttaaa
    23761 attttactag ctggttatat tattattgca ttgtttgggg ctttattgct acattcaagc
    23821 tgggcacata caactcctat tgatttttta gatgcctttt ttacaagcac atctgctgtt
    23881 agtatgacag gattagtagt taagaacact gcggttgatt ttaccttagc aggacaaatt
    23941 attatcttag ctttggtgca aattggaggc ttgggatata tgggtatagg tttatttgtt
    24001 tatatactca tacgcaaaaa agttggtttt agtgcaagaa atttactaaa agagtcttta
    24061 ttttatccat caatggatgg tttatttaaa ttttttaaaa aggttttgct gttcattttt
    24121 actatagaat tgataggtgc tatacttctt gccatgcgtt ttgcccttga aatgaatttt
    24181 aagaaagctt tatggtttgg aatttttcat tctattagcg cttttaataa ttctgggttt
    24241 actatatttg aacatgggct tatagcttat aaacatgata tagcaattaa tcttattatc
    24301 acttctttga ttattattgg agggcttgga tattttgttt tggttgaatt atactttttt
    24361 caaagaaaaa aattgcaaaa tttaagccta catacaaaaa tagttgttgt tgcaagtatt
    24421 tttcttatac tctcttcaac acttattatt tttgcttttg aatactcaaa tcctcaaact
    24481 ataggacatt tttcattttt tgataaaatt ttaagctcat attttatcgc tattaactac
    24541 cgtacagcag gatttaatac cttagatatg ggacatttgc atgatgcaag cttatttttt
    24601 ggatcattgt ttatggttat tggtggtgca ccaggtggaa cagctggggg tatgaaagta
    24661 acaactgtaa tggttttatt gctctatgct tattggagta tccgcgatgg aagagttaga
    24721 atttttggac atgaaattcc aagagaaact atatctaaag cttttatcat agctgtaggt
    24781 tcagctgttt atatagtaat agctgttatt ttgctttcct tgctagagtc aaaatttgat
    24841 tttatagcct tgctttttga aacttcttca gcttttgcaa ctgtaggaat ttcagtagga
    24901 aatggtggaa ctttatcttt atgcgctttg tttagtgatc ctagcaaggt aattatcatc
    24961 attatgatgc taagtggtag gataggtgtt tttgcttttt tactctcggt attcaaacaa
    25021 gacaaagcta ttcatttaaa attccctgaa ggaaaggtta atttataaag gtaaaatcgt
    25081 gaaaaatctt aattatggaa ttataggact tggaaaattt ggctcagttg tagcagatga
    25141 actcattgct ggaggtcata ctgttatcgt tgcagataaa gatgaggaag ctttaaaaag
    25201 catacaaaat cctccaagtt atgcttatat tttagattct acaaatattt cagccctaaa
    25261 agaagcaggc tttcatgatg ttgaagttgt tattgtcagc ataggagaaa atgttgaaaa
    25321 atcaatcctt actcttatgg cgcttaaaga tataggtgtt aaaaatatca ttgctaaagc
    25381 aacctctaac atccatggtc aaattctttc taagttaggc gccacaaagg ttatttatcc
    25441 tgaaaaagaa agtgctaaaa gactagtaaa agaattttta accaaagatg ctgattatga
    25501 agtttttgat ctttcagcaa atactatacg agctattaag atcaatatag atgaaaaatt
    25561 agcaggaaat tctttaaaac atgtagcaca aaatatgaaa gtgatttctt ataaaaaatt
    25621 aaatagcgac tgggaaatac tacctgattt agaaaccacg acagtttata gtggagatgt
    25681 tgtaattctc cttggaacag ttaaggaact tagagaattt gaacactaag caagatttaa
    25741 agccttgcaa gcctttacaa aacgctttaa ggctgttttt tctttggtag aaattttatg
    25801 atatataact tcatctaaat aatatctaac atcttttata tctaaatccc ttgttttggc
    25861 atatttttga agtatataat agggaatttt aatctttgtt tttggaaatt ttttcaaaat
    25921 ttgtttatat aaagcttttt tttgcacaca agaaaatcta gcaaaaacaa aaggcaatcc
    25981 tgttttttca tgccattttg cacataaatc gatatattta gaaggatctt ttagataaag
    26041 ctttaaagcc ttatcgccta taattacttt tccatcttgt tttaatactt tagctaaagc
    26101 atttgaagtt gctgaacttg gatctttggc atttaatgta tttttttcta ctaaaacact
    26161 taaaactctt ttattggcac aaatacccaa atctaaattt ttatattttt ttctagcgct
    26221 ttctatgctt gaaatgatag ctgcatcaat tcttctataa aataaatctt tatttagctt
    26281 acttggaact ccttttttat gctccatact tgctttaaaa ccattaggta agggatattt
    26341 cttaagatat atatgcaaag gtaaaagatt aatataatca atttttccaa aaatcatctc
    26401 ttttaaagag tgttaaacac tctatctcct gcatctccaa gccctgggat aatataacct
    26461 ttttcattta aaccttcatc aatacaagcc acaaaaactt ctacatcatc atgcgtttgg
    26521 ctaaattttt gcaaaccttg taaagcagca agtatggata taaattttat ttttttaact
    26581 ccttggcttt ttaaaaaatt acaaacctct atagcagtcc cacctgtagc aaacatagga
    26641 tctataacaa tagcggtgcg tttttttgca tctttgggaa gtttttgaaa ataaaaatcc
    26701 gcctttaaag tctcttcatt tctcacaaac cccaaaaatc caacacttgc atcaggaatc
    26761 atcttaaaaa cactttcaag cattcctaat gcagctctta aaataggaca aatcataatc
    26821 ttttcatcaa gtttttttac tatagttttt tgtataggtg ttgaaatttc aatttctttt
    26881 aaagaaaaat ctttactcac ttcaaaaagc aaaaaagatg aaatttcatc gattaacata
    26941 cgaaattgaa agggctttgt ctctttagcc cttaaaattc ctaacttatg ttcgatcaat
    27001 ggatgattga tacaatgaat atttttcatt ttaagctttc aaaataagct ttctcgttaa
    27061 aattttttac cttagccaca ccatctttta ccgcagctgc tgctacagct gtacttactg
    27121 cagcttttac tctttcatca aaaggttttg gtatgacata atctcttcca aattctaagg
    27181 tacttaaatt ataagccttt ttaactgcat cacttacagg aagttttgca agatctgcta
    27241 atgctttagc agccgctact ttcatatttt cagtgatttt acttgcacgc acatctaaag
    27301 ccccacggaa aataaaagga aaacctaaaa cattattgat ttgatttgga taatcacttc
    27361 ttcctgttcc tacaatcgta tcttttctaa gtctagctac atcttcaggc atcacttcag
    27421 gaataggatt tgccaaagca aaaatcacag gatcttttgc catgcttaaa accatttcat
    27481 catcaagaat ttttggcgca ctaagtccta ggaaaacatc agctcctttt aaaacgtctt
    27541 ttaaagtctt ttccttagaa tcaacagcaa attcaagctt ttgaggagtt aaatcatttc
    27601 tatctttaga aatcactcct ttgctatcta ctaaaataat attttcaacc cctaaatttc
    27661 tatacatctt agcacttgct atacctgcgg cacctgcgcc acttacaacc accttaatgt
    27721 ctttaaattt tttaccgctt atctccattg cattcataag ccctgcagtt gaaataatag
    27781 ctgttccgtg ctgatcatcg tgcattacag gaattcctaa atcttgcaaa gccgcttcga
    27841 tttcaaaaca ttttggagca gctatatctt ctaaatttat cccgcccaca gttggagcca
    27901 aagctttgca aaaatttaca atctcttcca cactatgaac atcaatttct atatcataag
    27961 cattgacatt tgcaaatttt ttaaacaaac aagccttacc ttccataaca ggttttgaag
    28021 cctgcgctcc tatgtttcca agtcctaaaa cagcagaacc atcactaact atagctacta
    28081 aattagcctt atttgtataa gtataagcaa gctcattatc tttagcgatt tcaaggcaag
    28141 gttctgcaac tcctgggcta tacgccaaag atagatcatg gcttgtagcc attggcttac
    28201 ttggtacaat atcaattttc ccacctaaat ggtattttaa agcttcttct tttaaattca
    28261 ttttattttc ctctaacttt taaaaaattt tctattcttt ttttgcactc atcaacctct
    28321 aaaaattcta atacttcaaa aatactagga cttaccgcac tccctgttaa agctatgcgt
    28381 ataggctgag ccaaatcttt taactttgct tctttttttt ctaaaaaatc atttgtaaaa
    28441 tcttcaaaat ctttacctgt tttttgatct ttaagtgtat tagcaaatgc ttggagcaat
    28501 tctaaattat ttttgttaat aaatttttgt actgcatttt catcataatt ttgcggtgca
    28561 ttaactatac tttttgcacc attgataata tcatgcaagg tttttgcacg ctctcttaat
    28621 aaatcaagta aaaatcctgc cttttcataa acagataaat caaagccaag atccttaagc
    28681 tgacggttaa tctcttcaaa aggcaaagtt ttaatataat gagcgttaag ccattcaagc
    28741 tttttaacat tataacaaga tgcgctttta ttaatatgat aagggtcaaa aagttttttc
    28801 aaatcttcta atgaaaaaac ctcatcatca ccatggctcc aacctaaacg cacaagaaaa
    28861 ttaagcaaag cttgaggtaa aattcccatt tctttgtatt ccataacatc agttgcccca
    28921 tgtctttttg aaagcttttt accatcttct ccatgtatca tagccacatg aaaaaattta
    28981 ggaattttaa aacccaatgc ctcataaagt acaatttgtt taggagtatt tgaaagatga
    29041 tcatctccgc gaatcacatc acttaccccc attaaagcat catcaataac aacagtaaaa
    29101 ttataagttg gagttccatc acttcttgca atgataaaat catccattat atcctctgct
    29161 ttaaatctca cctcgccttt aaccccatct tcaaaaacaa tctcaccgct ttgaggtgct
    29221 ttaatacgca caacaggctc tataccctga ggtggcgtgc ctgtaaattc tctatatctt
    29281 ccatcatatc ttgggcgctc tttggcagct tcttgcttgg cgcgcaattc ttctaattct
    29341 tctttactca tataacaata atacgcttta ccttcatcta aaagcttttt aacatattct
    29401 ttataaagat caaaacgctc tgattggtaa gttacttctc catcatgttc taaaccgcac
    29461 catttaaaag cttcgataat tgctttagta gcttctttgg aatttctttt taaatccgta
    29521 tcttcgatac gaagtaaaaa atttccacca ttttttctag cgtataaata attataaaga
    29581 gctgttctaa gtccacctat gtgcaaatac cctgttgggc ttggagcaaa acgcgttgta
    29641 agtttttcgt gcattttttg ccttttctta aatttttatt gatataatgc gatatttata
    29701 cttaaataaa ggtttgaaat gaaaaaaatt ttattaagtt ttgcattttt tgcaagttta
    29761 gctagtgcaa ataccattaa tgctatagcc gtagttgtag ataaagagcc tatcacaact
    29821 tatgatatag atcaaactat gaaagcactt aaaattgata gaaataaagc tttaggcgta
    29881 ctcatcaatg aaaaaatgga aatttcacaa atgaaacaac taggtattgt agtcaatgat
    29941 ctagagcttg atgatgctat aaataaaatg cttactcaaa acaaaacgac tttaaatgct
    30001 ttcaaagcaa atttaaaatc caaaaatcaa agctatgaac aatttcgtgc aaattttaaa
    30061 aaagatttag aaaaaagaaa gctttatgaa aaaatcgcaa gtatggcaaa aactgatttt
    30121 agtgatgatg gagcaaaaaa atttttcgaa caaaataaag ataaattcac tttttataca
    30181 caaattaatg caaatattta tctatcaaac aatcctcaaa ctttagaaaa tatcaaaaat
    30241 acaaaaaaaa caatccttaa accacaaaat gcatctttaa acacaagtaa tgccgatcca
    30301 agacttttag ggcttttatc acaaattcct gttggaggct tttcccctgt tttaaatgga
    30361 aaaaatggct atgaactcta tgaagttaaa agcaaagatg gggcacaaac tcctgaatat
    30421 gaacaagtta aaaatgaagt tttaaacgct tatgtaagcg aacaaagaca aaatttcata
    30481 caggattatt ttgataaact ccgctctaaa atcaatatag aatatttaag ataaaaatta
    30541 caattaaaat ttccctttaa tagggaaatt ttaatgtctt gcaagataat ttgtatcgta
    30601 attattatta ataaaatcag gattttccat catagaaaga tgaaaatctt tggttgtttt
    30661 tatcccactt ataagcaact catctaaagc tactttcatt tttgcaatag ctttattacg
    30721 atcttctgcc caaactacaa gtttacctat catagaatca taataaggag gcacgctata
    30781 gtcttgataa caatgacttt ccattctgac attgcgtcct gcgggtggaa tgtatttagt
    30841 aatcttacct ggacttggca agaaagtttt ggaatcttcg gctgtgattc tacattctat
    30901 agaatgccca tttaatttaa tactttcttg agatggtaaa gcataacctt ctgctacttt
    30961 aatcatttgt tctatgatat caatcccact taccatttca cttacacagt gttcaacttg
    31021 caaacgcgta ttcatttcta taaaataaaa atccaaattt ttatctacca aaaactcaaa
    31081 agttcccgca ccttcatatc ctatagcttt agctgcctta atagcagttt catgaagtct
    31141 agtgcgtgtt ttttcatcaa gcaaaatcgc aggggattct tctataagtt tttgatggcg
    31201 tctttgcata gaacaatctc tttcgcccac atgaatcaca ttgccaaaac tatctcctat
    31261 aacctgtact tctatatggc gtggattttg tatgtatttt tccatataca tagttccatc
    31321 gccaaatgct gtcatagcct cgctttcagc cgaccaatac gctttttcaa gatctttttc
    31381 attttcaacc acacgcatac cacgaccacc accacctgca gctgctttta aaatcacagg
    31441 ataacctatt tctttggcaa gttttttagc tgcttcagct cctgccaaag ccccatcgct
    31501 tcctgggatc acaggtacgc ctgctctttg catgacttgt tttgcttttg atttatcact
    31561 cattaaattc atagcttcca cagaaggacc tataaatttg atgttatgtt tagcacaaat
    31621 ttcaacaaaa ttttgatttt cacttaaaaa tccgtatcct ggaaaaatcg catctgcttc
    31681 agcaatttca gctgctgtaa taatggctgg gatatttaaa tagctttcag aacttcttgc
    31741 tttgcctata caaatgcttg catcagcgta ttttaaatac aaagcatctt tatctgcttc
    31801 agagtacaca caaattgctt ttttgcccat ttctttaatc gttcttaaag cacgcagtgc
    31861 tatttctcca cgattagcaa ttaatatgct tttaatttcc attttataat ttctccaccg
    31921 caaataaagg cattccaaat tctacaggct gaccatcagc aactaaaatt tcagcgatcc
    31981 tacaatcaaa ttccgcttca atttcattca tgattttcat cgcttcgata atagctatag
    32041 tatcgccttt tttaaccgta ctacctactt ttacaaaagg tgctgcacct ggacttggag
    32101 cttgatagaa agttcctacc atagggctat ttatacttgg tttgtttgat tttacacttt
    32161 gactaggttg agcttcgttt acaacgctta cattgatagg ttgtggagct ggaactggag
    32221 gacaaacagg agctggaaca tcgcagcaca tatctctttc aagttctatt tcaaaaccat
    32281 cttgttcttt gatcttaatt ttactaatat ttgcttcagc aaaaaggttt actaactctt
    32341 taatttcttc ttttgtcata aaattctcct acaaaattta agaacttaac cttgtattat
    32401 ataaaaaaac ttgaaattta actttaaaaa agaaaaaaat cataaaaaat atagattttt
    32461 taggttataa tccttacaaa caattacaaa tattaaaagg ttaaaaatgg gcttaaaagc
    32521 ggataattgg ataagaaaaa tggcattaga acacaagatg atcgaaccat tttgcgaagc
    32581 aaatatagga aaaggtgtgg taagctatgg actttcaagc tatggttatg atatacgcgt
    32641 aggacgtgag tttaaaattt ttaccaatgt taattcaact gtagtggatc caaaaaattt
    32701 cgtagaagaa aatgtagtag attttgaagg tgatgtatgt atagttcctg caaattcttt
    32761 tgccctagct agaactatag agtattttaa aatgcctgat gatgtcttag ctatttgtct
    32821 tggcaaaagc acttatgcaa gatgtggtat catcgtcaat gttacccctt ttgaaccagg
    32881 ttttgaagga catattacta tagaaatttc aaatactacg cctttacctg caaaaattta
    32941 tgctaatgaa ggcatagcac aagtgttgtt tttacaaggt gatgaaaaat gtgacaccac
    33001 ttataaagat aaaaaaggca agtatcaagc tcaaacgggc ataaccttgc caagaatttt
    33061 aaaataggaa cacttgttgc tttaatttta aaaaacttaa gcaaaggaag gcaaaatgtt
    33121 taacggaaaa aatatcttaa tcacgggcgg aacaggctct tttggaaaaa cctatactaa
    33181 ggttttgcta gaaaattata aacctaataa aatcatcatt tattctcgtg atgagctcaa
    33241 acaatttgaa atggcaagcg tttttaatgc tccttgtatg cgttatttca taggagatgt
    33301 aagagataaa gagcgtttaa gtgctgctat gcgtgatgtg gattttgtta tacatgctgc
    33361 tgcaatgaag catgtgccta ttgctgaata taaccctatg gaatgtataa aaacaaacat
    33421 acacggtgcg caaaatgtca tcgacgcttg ttttgaaaat ggggttaaaa aatgtatcgc
    33481 tcttagtacg gataaggctt gtaatcctgt aaatttatac ggtgcaacca aacttgcaag
    33541 cgataagctt tttgtcgctg caaacaacat agcaggtaac aagcaaacac gctttggtgt
    33601 tacaagatat ggcaatgttg taggttcaag aggttcagtg gtgcctttct ttaaaaaact
    33661 catcagcgaa ggagctaaag aacttcctat caccgatacg agaatgactc gtttttggat
    33721 cagccttgaa gatggagtaa aatttgtact gagtaatttt gaaagaatgc atggaggaga
    33781 aatctttatc cctaaaattc cttcgatgaa aatcaccgat ctagcccatg ctctagctcc
    33841 taatttaagc cataaaatca taggcataag agcaggagaa aaactacatg aaatcatgat
    33901 ttcaagcgat gatagccatt taacctatga atttgaaaac tactatgcta taagcccgag
    33961 tattaaattt gtagataaag ataatgactt tagtatcaat gccctaggcg aaaaagggca
    34021 aaaggtaaaa gatggttttt cttatagctc ggataataat cctttatggg caagcgaaaa
    34081 agaactttta gaaatcatca atcacaccga gggtttttaa aatgcttact tattctcatc
    34141 aaaacatcga tcaaagcgat atagatacgc ttacaaaagc tttaaaagat gaaattttaa
    34201 ctggaggtaa aaaggtagat gaatttgaag aagccctttg cgaatatgtg ggcgtaaaac
    34261 acgcttgtgt attaaactca gctacttcag ctcttcatct tgcctacaca gcactaggtg
    34321 tccaagaaaa aatcgtttta accactcctt taaccttcgc tgctacggct aatgcagcct
    34381 taatagctgg agctaaggta gagtttatcg acattaaaaa cgatggcaat attgacgaaa
    34441 aaaaactaga agcaagactt ttaaaagata gtaaaaatat aggagctatt agcgtggtgg
    34501 attttggggg aaatagcgtt gaaatagatg aaatttcaag ccttgctaaa aaatacaata
    34561 tccctttaat cgatgatgca agccatgctt taggtgcctt atataaaagt gaaaaagtag
    34621 gaaaaaaagc cgatctttct atcttttctt ttcatcctgt taaacccatc actacttttg
    34681 aaggcggggc tgtggtgagt gataataaag agcttatcac caaaatcaag cttttaagaa
    34741 gccatggtat cattaaaaaa aggctttggg atagcgatat gatagaactt ggctataatt
    34801 accgcttaag cgatgttgct tgtgctttag ggataaacca gcttaaaaaa ctcgatcaca
    34861 atcttgaaaa aagagaagaa attgcaagtt tttacgataa agaatttgaa aaaaatcctt
    34921 atttttccac gataaaaatc aaaaattata aaaaaagctc aagacattta taccctatct
    34981 tgctttttcc tgaattttat tgtcaaaaag aagaactttt tgaaagcttg cttcatgcag
    35041 gagttggtgt acaggtgcat tacaaaccta cttatgagtt tagtttttat aaaaaactct
    35101 taggagaaat aaaactccga aatgcggata atttttacaa agccgagctt agcatacctt
    35161 gtcatcaaga aatgaatcta aaagatgcaa aatttgtaaa agatacttta tttagcattc
    35221 ttgaaaaagt taaaaaggga tattgtgaat aagctagact ttagaagcca agattttagc
    35281 caaactggaa aggctatgta ataaactagc ttgcgaactt tttcctatcc ctagaagcat
    35341 cacagggcaa ggttttagag atagcttaga aattttaaat aaaactctgg gcggcggggg
    35401 gatactcaaa tttcactcta taaaaagtgg cacaaaggtt tttgactgga tagtccctga
    35461 tgaatggaat gttaaagaag cctatatcat cacctcagaa ggagaaaaaa tttgtgattt
    35521 taaaaagcat aatttacacc ttctaaatta tagcgaagct atcgataaag aaatcgaact
    35581 tgaataactt caaaatcatc tttactccat agaagaaatg cccgatgcta ttccttatgt
    35641 aacgagttat tacaaaagac gttggggatt ttgtctcacg cataatgaaa gaaaaaaact
    35701 caaaaaaggc aaatacaaag tctatatcaa tgcgaaacat gatgaaaatg gggttttgga
    35761 ttatgctgat tttatcctac ctagtacgca aaattcaaaa gatgaaattt taatttcaac
    35821 ctatctttgt catccttcca tggcaaataa tgagcttagt ggtcctgtgg tggctatttt
    35881 cctagcaaaa tggcttttga gtttaaaaga aagaaggtat aattaccgct ttgtcatcat
    35941 tcctgaaacc ataggctcta tagtctatct tagcaaacat ttagagcatt taaaaaaaca
    36001 tgttaaagca ggctttgtgc tttcttgctt aggcgatgat catgcttact cactcataca
    36061 cacacccaaa aaaacactct aagtgataaa gttgccttgc atacgcttaa aaataaaaaa
    36121 aatttcaaag cttttagttt tttagatcgt ggaagcgatg aaagacaata caatgctccg
    36181 cttgtaaatc ttggcattgt aggagtatgt cgcacaagat acctagaata cgaacaatac
    36241 cacaccagca aagatgatct caattttatc tctgaaaaag gtttaatggg tggacttcaa
    36301 agcatacaag aaatgatttt aaatctagaa atcaacgctg tatatgaaaa caccatagta
    36361 tgcgaaccca atcttggcaa aagaggacta tatcataccc ttagcactgc caatgacatt
    36421 cctttagctt gtaattttct agcttactgt gatggagaga atgatatcat cgatatagcc
    36481 aatatcttaa atatgcaagc ttatgaattt aaagaacttt tgaaaaaaat aaaattttat
    36541 ggactagtaa aatgaaatat tttttagaac acaatgacaa aaaatactcc gataaggatt
    36601 taatagatgc tttttatcaa ctaggtataa aaagaggcga tattttatgt gtacatacag
    36661 aactttttaa atttggcata cctttgcttt ctagaaatga atttttacag actatactca
    36721 attgtttttt tgaagttata ggtcaggaag gcactttgat catgccaacc tttacttata
    36781 gtttttgcaa aaatgaagtt tatgacaaaa taaattccaa aacaaaaatg ggagcattaa
    36841 ataaatattt tcgcaaacaa acaggagtaa aacgcacaaa cgatcctata ttttcttttg
    36901 ctataaaagg agcaaaagaa gaattatttt taaaagatac aacaagttgt tttggggaaa
    36961 attgtgttta tgaagtttta gccaaagaga atggaaaata tataattttt ggtttaaatg
    37021 aagggcacgc tctagttcat tacgcagaag aaaaaaatac aactttttgt agatatttta
    37081 aaaattttaa aggtatttta ataaacgaaa aaaggaaaga aaaaacaata actattgact
    37141 actacgttag agatttgcaa cagtcttatt
//
LOCUS       DAPIWU010000004        35459 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.004, whole genome shotgun sequence.
ACCESSION   DAPIWU010000004 DAPIWU010000000
VERSION     DAPIWU010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 35459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35459
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.004"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            54..410
                     /locus_tag="RJ285_000139"
                     /pseudo
     CDS             54..410
                     /locus_tag="RJ285_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865665.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
     gene            473..822
                     /locus_tag="RJ285_000140"
                     /pseudo
     CDS             473..822
                     /locus_tag="RJ285_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865666.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            924..1175
                     /locus_tag="RJ285_000141"
     CDS             924..1175
                     /locus_tag="RJ285_000141"
                     /inference="COORDINATES: protein motif:HMM:NF013050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382961.1"
                     /translation="MNNFNCFILCGHFFWSTFEQKPTAYNLFAQDFTNRNIFDWKIPT
                     NWFQSFNPIFIIILAPIASYIWIFLEKKIYIFLPLENLL"
     gene            1202..1576
                     /locus_tag="RJ285_000142"
     CDS             1202..1576
                     /locus_tag="RJ285_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-/tripeptide transporter"
                     /protein_id="HDV7382962.1"
                     /translation="MMMTFASQNLINNNGLPISMAWIIISIFFLTLGELCVSPIGLSI
                     MAKVAPDLIKNQIMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAV
                     IILLILKKPINKILKINIKEKI"
     gene            1573..3363
                     /locus_tag="RJ285_000143"
     CDS             1573..3363
                     /locus_tag="RJ285_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HDV7382963.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLQINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNATSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KVLLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLMNS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDTKASEFRAQSKYYISDSFATIAGFNKNAAYPHYKATKDSFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDVAMPLLDAIARV
                     PLWKEQIDYMHGTGHGVGYFLNVHEGPQVLSYLSPMLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDFPKALVWLEKRTKAIF"
     gene            complement(3484..5289)
                     /gene="mrdA"
                     /locus_tag="RJ285_000144"
     CDS             complement(3484..5289)
                     /gene="mrdA"
                     /locus_tag="RJ285_000144"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDV7382964.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLAPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTHY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(5290..5784)
                     /locus_tag="RJ285_000145"
     CDS             complement(5290..5784)
                     /locus_tag="RJ285_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382965.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLTYVFF
                     KGKI"
     gene            complement(5781..6377)
                     /locus_tag="RJ285_000146"
     CDS             complement(5781..6377)
                     /locus_tag="RJ285_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDV7382966.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVACKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
     gene            complement(6374..6835)
                     /locus_tag="RJ285_000147"
     CDS             complement(6374..6835)
                     /locus_tag="RJ285_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HDV7382967.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNASFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(6817..7332)
                     /locus_tag="RJ285_000148"
     CDS             complement(6817..7332)
                     /locus_tag="RJ285_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382968.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNASTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDIKNKILN
                     IQGVSAWLQDK"
     gene            complement(7323..7811)
                     /locus_tag="RJ285_000149"
     CDS             complement(7323..7811)
                     /locus_tag="RJ285_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDV7382969.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKQGGKAAVAQMIEILVEKNHLKEEWNKL
                     WL"
     gene            complement(7817..8644)
                     /locus_tag="RJ285_000150"
     CDS             complement(7817..8644)
                     /locus_tag="RJ285_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDV7382970.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGAKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(8604..9722)
                     /locus_tag="RJ285_000151"
     CDS             complement(8604..9722)
                     /locus_tag="RJ285_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDV7382971.1"
                     /translation="MKKNLLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(9722..10537)
                     /locus_tag="RJ285_000152"
     CDS             complement(9722..10537)
                     /locus_tag="RJ285_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDV7382972.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQLVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(10528..11772)
                     /gene="cbrR"
                     /locus_tag="RJ285_000153"
     CDS             complement(10528..11772)
                     /gene="cbrR"
                     /locus_tag="RJ285_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HDV7382973.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVILAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDLVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(11875..13398)
                     /locus_tag="RJ285_000154"
     CDS             complement(11875..13398)
                     /locus_tag="RJ285_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7382974.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIELDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFISFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARVQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECNILNAGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKD"
     gene            complement(13398..14258)
                     /locus_tag="RJ285_000155"
     CDS             complement(13398..14258)
                     /locus_tag="RJ285_000155"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDV7382975.1"
                     /translation="MQNKIDHKNIKTIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCILCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            14349..16100
                     /gene="aspS"
                     /locus_tag="RJ285_000156"
     CDS             14349..16100
                     /gene="aspS"
                     /locus_tag="RJ285_000156"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDV7382976.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLIAEGAIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVINVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFAKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKEDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELNLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            16097..16675
                     /locus_tag="RJ285_000157"
     CDS             16097..16675
                     /locus_tag="RJ285_000157"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDV7382977.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVVNTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            16685..17203
                     /gene="ppa"
                     /locus_tag="RJ285_000158"
     CDS             16685..17203
                     /gene="ppa"
                     /locus_tag="RJ285_000158"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDV7382978.1"
                     /translation="MDLSKIKIGDIPNKINAVIEIPYGSSIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            17244..17741
                     /gene="msrA"
                     /locus_tag="RJ285_000159"
     CDS             17244..17741
                     /gene="msrA"
                     /locus_tag="RJ285_000159"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDV7382979.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVIDTEVGYSGGNPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(17917..18756)
                     /locus_tag="RJ285_000160"
     CDS             complement(17917..18756)
                     /locus_tag="RJ285_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HDV7382980.1"
                     /translation="MQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKIQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(18785..19168)
                     /gene="ruvX"
                     /locus_tag="RJ285_000161"
     CDS             complement(18785..19168)
                     /gene="ruvX"
                     /locus_tag="RJ285_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDV7382981.1"
                     /translation="MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(19165..19938)
                     /locus_tag="RJ285_000162"
     CDS             complement(19165..19938)
                     /locus_tag="RJ285_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDV7382982.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASIAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLV"
     gene            complement(19928..21010)
                     /locus_tag="RJ285_000163"
     CDS             complement(19928..21010)
                     /locus_tag="RJ285_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDV7382983.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVFSVKP
                     DYFIDKQEDLISSNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFIPKDTNLTQDQNLTFDEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPEIDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEALKNQNIFFVDSKTI
                     GNSKANKIAKELSMPYIQRDVFLDNEDDVNYVKKQLESAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
     gene            complement(21014..22036)
                     /gene="ilvC"
                     /locus_tag="RJ285_000164"
     CDS             complement(21014..22036)
                     /gene="ilvC"
                     /locus_tag="RJ285_000164"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDV7382984.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     IIGLREGSVSAVKAKNAGFEVMSVSEASKTADVVMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVAPKGIDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIVTEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            22155..24089
                     /locus_tag="RJ285_000165"
     CDS             22155..24089
                     /locus_tag="RJ285_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HDV7382985.1"
                     /translation="MKEFLNSLSYGISSHEVSNEFKQILRELLANHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDIQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKIALDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADARKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALSDELNLRAEVDKLIIKAQKKAEYSSINAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCESLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLESVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            24082..25047
                     /locus_tag="RJ285_000166"
     CDS             24082..25047
                     /locus_tag="RJ285_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDV7382986.1"
                     /translation="MYRKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKILVELCKNNTNNFF
                     LLELYDENSKQSDIEKIFSPHFARFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKCEYELKTNSKLVKKEFLISNLLKLARILKS"
     gene            25140..26183
                     /locus_tag="RJ285_000167"
     CDS             25140..26183
                     /locus_tag="RJ285_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction enzyme HsdR N-terminal
                     domain-containing protein"
                     /protein_id="HDV7382987.1"
                     /translation="MDFENQLNAIVETIAERKTLVNTEEATKMTFIMPFLKTLGYDVF
                     NPSIVVPEYTADIGTKKGEKVDYAIFKDSKPFILIEAKNHTENLDNHNNQLVRYFNTN
                     PSIKFAILTNGIEYRFFTDIEQQNLMDKIPFLVVNLEKLKPRDIKDLKRFICTDLNLD
                     EILSIAMEKKYYRSIQEIFKSEIENPSDEFTSFFAKQMTEKRMTSAVLEEFKNYIKKS
                     FKEIINDLAYEKITSIKNNLQNINDDENDEQIDESKDIVTTEEELQGFYIVKSILASV
                     SANLEDVSYKDTLSYFSILYQGKVTKWICRLYFNTSKKSISFPDGASYNIEKLEDIYQ
                     YKADIIKAFESRK"
     gene            complement(26205..26549)
                     /gene="hypA"
                     /locus_tag="RJ285_000168"
     CDS             complement(26205..26549)
                     /gene="hypA"
                     /locus_tag="RJ285_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HDV7382988.1"
                     /translation="MHELSIVESLIELCEENALNNKAYNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
     gene            complement(26549..27523)
                     /gene="hypE"
                     /locus_tag="RJ285_000169"
     CDS             complement(26549..27523)
                     /gene="hypE"
                     /locus_tag="RJ285_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HDV7382989.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEANVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            complement(27520..28611)
                     /gene="hypD"
                     /locus_tag="RJ285_000170"
     CDS             complement(27520..28611)
                     /gene="hypD"
                     /locus_tag="RJ285_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HDV7382990.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGCGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCAVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            complement(28595..28876)
                     /locus_tag="RJ285_000171"
     CDS             complement(28595..28876)
                     /locus_tag="RJ285_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HDV7382991.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            complement(28876..29619)
                     /gene="hypB"
                     /locus_tag="RJ285_000172"
     CDS             complement(28876..29619)
                     /gene="hypB"
                     /locus_tag="RJ285_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HDV7382992.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSITEGSDKPQKYPVMFKKADIVLITKVDLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            complement(29697..31886)
                     /gene="hypF"
                     /locus_tag="RJ285_000173"
     CDS             complement(29697..31886)
                     /gene="hypF"
                     /locus_tag="RJ285_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HDV7382993.1"
                     /translation="MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGNLVATSANLSGESI
                     IKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKEF
                     LAKIPKIKLENLKKIYSQSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFIEKGQANFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            complement(31867..33387)
                     /locus_tag="RJ285_000174"
     CDS             complement(31867..33387)
                     /locus_tag="RJ285_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382994.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGQGFNPCIPEDKEFSRFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFSDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDYEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFNKEFPLLDENFELQNNFYSLLSLLGRVLNLGRNL
                     QESASELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDAPLRV"
     gene            complement(33429..34076)
                     /locus_tag="RJ285_000175"
     CDS             complement(33429..34076)
                     /locus_tag="RJ285_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDV7382995.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKTRFEKKVLKDDELIFLAKKYQIIFDENAKKIYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSKKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     INLNLKLIQKSLRAIEYVILHEISHLKFPNHSKEFYTFIEHFMSDFRQREKEFLS"
     gene            complement(34052..35368)
                     /locus_tag="RJ285_000176"
     CDS             complement(34052..35368)
                     /locus_tag="RJ285_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDV7382996.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
BASE COUNT        12474 a         6074 c         4616 g        12295 t
ORIGIN      
        1 tctattgcta ttagttaaaa tattttaagc ataaaaaaga aaggtattgg gaagtgacta
       61 aacaagaaat acaaaaactc gatacaaatt tcctaggtca tcccaagtct ttattctctc
      121 tatcaatggt agaactttag gaaagatttg ctttttatgg catacgatct ttacttgtgc
      181 ttttcatggc aacaaccata aacaaaggtg gacttggaat aagcactgaa tacgcctcgg
      241 caatttatgg catttttgca ggatgcttgt atttagcagc acttcctgga ggctggatta
      301 ctgataatta tttagggcaa aaaaaggctt tatttctaga ttcttttatt atagctttag
      361 gacatattag catagcctta tctattttaa gcacacctat gtttttctag ggcttacttt
      421 tatcgttatt ggtactggat tttttaaaac tagcgcttct gtaacagttg gaatgttata
      481 taaacaaaat gatacaagat gcgatactgg ctatacgatt ttttatatag gaattaacat
      541 tggagcattc attgctcctc ttatatgtgg ttttgttcaa gcaaaatgga attatcattt
      601 aggatttggc ataggaggtt taggtatgct aatctctttg cttattttat attttaaagc
      661 tgcccctgag cttgaagaat ttcataaaaa ttgtacttta aagcaaaact gggaacaacc
      721 atttaaaaaa gtaaaaattt aactcttata ctaagtataa gcttattaag tattattgga
      781 ttttttctaa tttttattaa tcttgcagat attaatccca taatactatc aagaaaactt
      841 ctaattgtaa ttttactatg tttggtaatt tatttcatat atttttttgt ttttaaaacc
      901 ttaaataaaa gagaaaaaca gcaattaaca attttaattg ttttattctt tgcggccact
      961 ttttttggag tacttttgaa caaaaaccta ccgcttataa tctttttgcg caagatttta
     1021 caaatagaaa tatttttgat tggaaaattc caacaaactg gtttcaatct tttaatccaa
     1081 tttttatcat catacttgct cctatagcaa gttatatttg gatattttta gagaaaaaaa
     1141 tatatatttt tcttccattg gaaaatttac tttaggaata ttatttgccg gtattggttt
     1201 tatgatgatg acctttgctt cacaaaatct aataaacaac aatggtttac caatatccat
     1261 ggcttggatt atcataagta tattcttttt aacacttggg gaactatgcg tgtctcctat
     1321 tggactctct ataatggcta aggttgcccc tgatttaatc aaaaatcaaa tcatgggact
     1381 ttggtttgta gcaagtgcat taggcaatgc tttagctgga ttcataggtg gtaaagcaag
     1441 tgaagaaaat atagcttatt tgccaaattt attttaccaa tgtatgtgga tattacttgg
     1501 tgctgttata attttactta tactcaaaaa acctatcaat aaaatactaa aaattaatat
     1561 taaggagaaa atatgagtat ttacaaacaa agagtattag aacttagaag attaatgaaa
     1621 gaaaataata ttgacgccta tctcatctta agtgcggatc cgcatttgag cgaatattta
     1681 ccagaatatt acaaaaacag agtctttatc agtggcttta agggttctgt tggaacagtt
     1741 cttatcacgc aagaagaggg ctttttgtgg gtagatggaa gatattggct tcaagcacaa
     1801 aaggaattag aaggtagtgg catactttta caaaagcaag atgctaaaaa tacttttacc
     1861 aaatggttgg aaaaaaattt aagcgaagat caaattttag gcatcgattt tgcactttta
     1921 cctttatctt tacaaaaaga tttacagatt aattgcaagg caaatttaaa acatatagat
     1981 ttgataagtc cactttggaa agatcgtccc actttaccac aagaaaaaat ttatgaacac
     2041 gaactagaat actgctctta ctcaagaaaa gaaaaattag cattagtgcg tcaaaaaatg
     2101 aaaaatttaa atgctacttc tcatttaatc tccagccttg atgatatagc ttggcttaca
     2161 aatttaaggg ggaatgatgt aaattacaat cctgtatttt taagtcattt actaatcttg
     2221 gaagacaaag ttttgctttt tgttgatcag aaaaaagtaa attcagaact tgaaaaaaaa
     2281 ttaaatttag atgggttttg gcttaaaaat tatgatgaaa tcatcatgga gcttgaaaaa
     2341 cttgcaaata caaatttgct tattgaacct tcaaaaatga ccgctttact catgaattct
     2401 ttagacaaaa gcgtaaaaat cattcaagaa attaatccaa gcactcattt aaaagcagct
     2461 aaaaatacaa aagaaatagc gcatatacaa gatgctatga tagaagatgg agtggcttta
     2521 tgtaaatttt ttgcttggct tgaagaagcg atagaaaata aagaattaat aagcgaattg
     2581 gacatagata ctaaagcgag cgaatttaga gcgcaaagca agtactacat aagtgatagc
     2641 tttgccacta tagcaggctt taacaaaaac gcagcatatc cacattataa agccacaaaa
     2701 gacagttttg cttatcttaa aaaagatggg cttttactta ttgattctgg tggacaatat
     2761 aaaaacggca caacagatat tacacgcgtt gtgcctatag gaaaggctaa tgcagaacaa
     2821 attcatgact ataccttggt tttaaaagca catattgcca tttctagtgc aatttttcca
     2881 aaagatgtag ctatgccctt acttgatgca atcgcacgcg tacctttatg gaaagaacaa
     2941 attgactata tgcacggcac aggacatggc gtgggatatt ttttaaatgt ccatgaaggt
     3001 ccacaagttt tatcttatct atcccctatg cttgaaaaaa caaaagccaa agaaggtatg
     3061 ctaacttcca tagagccagg tatttataaa gtaggcaaat ggggtataag acttgaaaat
     3121 ttagttattc ataccaaagt agaaaatcct aaaaataaag attttggaga atttttatac
     3181 tttaaacctg ttactctttg tccttttgaa atatcttgta ttgatacaaa aatgttagat
     3241 gaaaaagaaa aagagtggtt aaacaattac cacaaagaag tatttgaaaa actttctcct
     3301 aagctaggtg attttccaaa agctctagtt tggcttgaaa aaagaacaaa agccatcttt
     3361 taagatactt ttgttaacat agataaattt tccttgtatt aaacttataa tttgtttaat
     3421 acaaggtttt taaaccaatt gctaaaaaag ttttttttga aaaactcaat ttacaactaa
     3481 aaattattta aaatatccaa gttcaatcat tttttgataa attttagcta cagttgcccc
     3541 tgaagtaata tttctcccac catgctccaa aagaacggta actacatatt ttggcttaga
     3601 ataaggagca taagaagtaa gccacgcatg agatctagta taatactcaa attgtttttc
     3661 atcgacccta tttttatctg tctgtgaaaa tcccacaacc tgagcagttc ctgtttttgc
     3721 tgcaactttc acatcaagat tatgcaaata acgataagag gttcctcctt gctcattagc
     3781 aacagcatac attgcatctc ttatataagg caattgactc ttttcaaata aagtaaaaat
     3841 ttctttttta ttttcatcca tttgattttc tatagttgta ttattatttt ctatgctttt
     3901 taaaaaatga ggtataacct ctccaccttt tgcgatttga gccgtatatc tagcaatttg
     3961 cataggtgtt gcaagaaaat taccttgacc tatagctgta tttaaagtat caccttgaaa
     4021 ccaagattgt ctatatcttt gcatcttcca ttctttgctt ggtaaagttc ctacaaattc
     4081 actaggtaaa tctacccctg ttttcgctcc aaagccaatg cgagataaag tttcacttat
     4141 ttgatcgatt ccaacttgca aactgccatt ataaaaataa acatcacaac tatattttat
     4201 cgcatgtttt aaatccacag gtccatggcc tgatcgattc caacatctaa aaaacctgcc
     4261 tccaagctca atgcttccat tgcaaacata atgagtcgac gggctaatat ttttagaatt
     4321 taaaaaagaa agccctactc ccatttttac aacagaacct ggaggataat atccatttat
     4381 aagtttattt gtaaaaggat gatcaagact atttgaaagc tcatcccaat ccttaaaaga
     4441 aatccctgtt acaaaaggat taagatcata ttcagggaaa ctccctgcag ctaaaataga
     4501 tccatcattt acattcataa ttatagcagc tccagcattc ccttcaaaca atgaagttaa
     4561 ataagactga agctctatat ctatcgtaag ttctatatca ttagacatag caggagtgta
     4621 agaaagctgt tctacttctt gatttaaggc attaacctta taaaccctag ttcctttttc
     4681 tccttgtaaa atatcattat aatagcgttc tataccgctt tttcccgtat agttagaaag
     4741 ttttgctatt tcattttctt gaacatcttg caaatttgcc ttacctacat acccaataat
     4801 atgcgaagcc aattttccaa aaggatattt tctttttaca acaggatcta tttttattgt
     4861 tttattaaga tttaactctg aataatgcgg aataatctca tcgtagggta taaaatctac
     4921 aactttaata aaatcttgat tatagtaaga atcatttctc ttataaattt ctgctaattt
     4981 actagcattt aaatcgggaa ataaatttgt aagttcagat aattctttat ctaaaattcc
     5041 tttatttgac tttttaatac ttaaataagg tttaatagaa atactaaaac ccaaatcatt
     5101 aatagccaat aaagttccat ttctatctgt aatttgaccc ctaacaggtg ctaaaaattc
     5161 agtttttatg gcattttgtt tggcaagttc ttcataatat acatttgatt ttatactcaa
     5221 ataatacaca cgacttaata aaaatataaa aaacaatagt ataaatccaa caactaaacg
     5281 cattctcatt taaattttac ctttaaaaaa cacataagtt aaacaacatt ctataaaaac
     5341 tgaaacaata tacgcccatc ctaaaatttt aattttttca tctccaatat aagacaatat
     5401 catatccaaa aacaaaataa tgccgtaagc acaaagcaca aaaacaacag ggataaattt
     5461 accaattttt aaatttgtct taatccaatc tgcacaaaga taataaaaaa taaaaaatgc
     5521 caaccaagat gaaaaaataa aaaaattata agttatatca gtaaaaaata aaaaaaataa
     5581 agaaaaatac catctaaaat caagctttga aaaagttctc tctctctctt ctaataagca
     5641 aaacatataa cagaaaaaaa tcccataaag taacggggta tatacaaaag tcgaaccaag
     5701 aatctgataa attagaaaaa aaaatcctaa aaagacataa gctccattaa attttgcttt
     5761 ataagcactt aaatttcttc tcatttatca agacctaaag tttgattgat aataatatct
     5821 tctaaagaat caaggccaaa tttattcaaa tttgaaacta aaatagagtc tttaaattca
     5881 ttttttaact tagctttttc actttgattt aatttatcgc atttggtaaa aacttttaaa
     5941 attttttgat caggtcgtaa aaatcttttc aaatagtcat ttaaatttac atcgatctct
     6001 aaatgagtat gtcttgagtc gattaaatgt ataaataact ttatcgaggt tcttaatttt
     6061 aaaaattcat ctaagttttg attccatatt tcttttaaat ttttagaaac ctttgcataa
     6121 ccaaaccctg gtaaatcgat aaaattgata ttaaattttt cttcatttct tttgcaagct
     6181 acttcgaaaa aatttataag ctgagttttt ccaggagttg ccgaactttt ggctaaattt
     6241 ttttgtttac acaaagaatt gattaaagaa ctttttccga cattggaacg ccccaaaaat
     6301 gctacttcac taaaatttga gctcaaattc tcatcaaatt tcactaaaga agtgataaat
     6361 ttagcactaa ttatcatttg tctttaaggt caaatacaaa acgagcaggt ttttgatcct
     6421 tgctctctac tcgataaata ttagcttttc tatcgactat tattttatca ccaaaaagtt
     6481 tttgattgct tccaagctca tttatataag catgaccatt aatctcgtaa gtatctttaa
     6541 taacattata aataaattta tctccactac ctttataagt tttacctttt aaaacaatct
     6601 taaagctagc attttgcatt gcttcataac gaataggttt gcgattttta tccgtataaa
     6661 taatcaattt ttcagaattt aaaatatcat cacccctaat tacttctaca tttccactaa
     6721 gaatactttc acccttattt tcatctgagt aaaaatttaa agcttttact tcaatttgag
     6781 ttgcccaagt tacacttaca caagccaaca ataaaattat ttgtcttgca accacgcact
     6841 tactccttgg atatttaaaa ttttgttttt tatatcatag tttaaagtat ttccgttaat
     6901 aatacttcca ttgatcagag ctttaaaatt agtatttgtg tgtaaaattt tatccttagg
     6961 ttggtattct acctcttgag aaataatttt gacattatta gaacctatat aagtaacatt
     7021 tccttcaaac aaaaccttgc tcatatcttt attgaaaaac tctaaacgat tcgcactaag
     7081 attaaaatct aaatttaaag taataaagtc attaaattca tctctatctg catatctcac
     7141 ccaagaattt gccttataat atgccttaat tgtactagca ttactctcat aagctttcaa
     7201 atttttagcc tcaatatttt taaaatttaa agcattagtt tgcaaattca aagaatacgg
     7261 atcttgcaaa cttaaaatcg taaaagtaat tgtaaaaaga gcaattaaaa ttccaaaaat
     7321 ttttatagcc aaagcttatt ccattcttct tttagatgat ttttttctac taaaatttct
     7381 atcatttgtg ctacagcagc cttaccacct tgtttgctaa gcactatgtc tacatttaaa
     7441 tctttatgac catcttttgg cttaaaacta agtcctacac tttcaagtaa agccttatcg
     7501 ttaaaataat ccccaatagc cgcacactga gaaaaatcta aattaagttt ttgtaaaatt
     7561 tcttttgcac aagctaactt atccttgatg ccttgatata aaatttctat ttttaaatct
     7621 ttagctcttt tttcaacaca aggacaattt ctacctgtaa taatagcaat ttttttacca
     7681 agctttagcc aagcctcaat agccgctcca tcttttacat caaattcttt aataaattct
     7741 ccattagaag tataaataat ttttccatca gttaaacagc catctacatc caaaaaaatc
     7801 aattctgtca taatttctat tctcttacaa caaatgcgcc tgcaaatgca ccacttgcag
     7861 caaaatccct tgcttcatct tcacttctaa agcctgttaa gaaaacgcga tttaacccat
     7921 ccactgaact tgtgcgtata gtagagctat aagttctata agttttatat cttgctgcta
     7981 tcgtttgtgc tccagctggg tttttaaagg ctccaatttg aaccatgaaa tttccacctt
     8041 cataaatttg tccattattt gcaatctctc cactatttcc atagtttaca ttagaatgta
     8101 caatattatt acccgaatta cttgatccaa atcctataac ctcaagcctt actggagctg
     8161 ttcctgaagc aatcatatca atttgactag cagctccttt tgataaatct ataatacgat
     8221 tatttacaaa aggacctcta tcattcacac gaacggtaac ttgacgattg ttatttagat
     8281 tggttacttt taagatggta ttcataggta aagttttatg agccgcggtt aaagcatttt
     8341 gattataggt ttcgccatta gaggttttct tgccgtgaaa gcctggccca taccaactcg
     8401 caataccatc agcagtttcg cctactgcta cgacagtagg ataataagtt ttaccgttga
     8461 tagtataagg cttcatcgtt cctttagccc ctgaagaact aggactgctt ttaaaatcat
     8521 ttgaaggata atacacttga gcattatcca agctagaaaa aaaactagtg cctaaacaac
     8581 cactaaaaaa taaagcccct agactaacgg ctgacaactt tagtgtaatt gtttttattt
     8641 gcatttttat tctccttgat tggtataatt aatttttgat taatgctaag atgatttttt
     8701 gctattttat tgaattctcg aatttcatca acacttatat tataattttt tgctatttta
     8761 tataaagagt caccagactt aacggtataa gttcttgtca taggtatagt tgtatcaacc
     8821 tttgcaagtt tttctgcttt aaaattttta tcaaaaaatg ctactttatt aagtggtata
     8881 tacatataat accctttacc aggaggcgta aaattatgtt taaattgtgg attatatttc
     8941 ttaaaagttg caagatccat atttaaattt ttagctattt cttttaaaga tgcagaagaa
     9001 ggcacatcaa cttttgcaaa ttcattgctt aaagcataat tcattaaaga cgcatcttta
     9061 tctagtaaaa aatccctatc attagctaaa aaagcaagcg ttaaaatctt tcttataaaa
     9121 tttctagttt ctaaagaaag atatttctta tcagggttca ataaaacact taaatcatca
     9181 cttcctgctt gcttgatagc ttgtcttagc ttgccatttc cgcaattata agctaaaagt
     9241 gccaaatacc atttgccaaa ttcttctttt aactctttta aataatttgt agcggcataa
     9301 gttgacttga ctggatcacg cctttcatca acataagcat cgattcttaa acccaaattt
     9361 ctagctgttg gttgcataaa ttgccaaacc cctacagcct tggcattaga aacgctatga
     9421 gttttcaagc ctgattcaac catagctaga tacaaaatct catcaggaac ttcctgctgg
     9481 gctaaaattt ttcttatcat aggagtaact tttgaaaaat tttgcatact atctattaaa
     9541 gtttgagcat gttttgattt tatatcttgt tgagtttgca caaaaatcaa atcactaata
     9601 aaacttggat taatatctaa atttcttaaa acattcattt gtctttcata aaattcagga
     9661 gtattaattt gtgcaaaaag aaaattaaaa catattaaaa aacacaataa attttttttc
     9721 attaataacc tttaaaaaat aatttttcag aattgttaaa acaaatttct agaagttctt
     9781 ttcttgataa attcaatact tcacacattt tgtttgctac caattgagtt aacaaaggtt
     9841 catttctttt accgcgataa ggctctggag taagatatgg agcatcagtt tcaagtagta
     9901 gtctatcttt tggaatttta ggtaaaattt caactaattt cttagcattt ttaaaagtta
     9961 aaactccccc aataccaaaa taaaatccat cttcaaaaag agttagcaaa tgttcgcttg
    10021 cattaaagca gtgtaaaact cctcctacaa gatccttaga atacccatgt aaaatctcat
    10081 aagtatcatg atttgcttct cttgagtgaa tgataacagg ttttttaaat tcaatagcaa
    10141 gttcaagctg tgcgataaaa atcttttttt gattttcttt ttctttttga atttcttcag
    10201 caagatcact tttaaaacgg aaataatcaa gcccacattc acctacagct acacactttt
    10261 catcgcataa atactgcctt aaaattttct catcataatt atcaatttca taaggatgca
    10321 cccctgctgc aaaaaaaata tttttatatt tatgagcaat tgtagctgca taaggcaagt
    10381 cttttatatc agcaccaggt atgatgattt tctctatacc atttttaaaa gcacgattta
    10441 aagtttcatc taaatcatct ttaaatgctt cactgtctag atggcaatgc gtatcaacaa
    10501 tccttaaacc atcttgaaaa tcaagattta agaacatact tcaactctat ccttgccgtt
    10561 atcttttgct tgagacaata ttttacttgc tttatcaacc aaagaatcaa tcttatctcc
    10621 actttttcca aaaaccacgc ctatagaagc tgtaaaaaag acttcatcta aattaactaa
    10681 aacaccagct ttttttatat ttactcgtat acgagaaaag attttaatcg ctctttcttg
    10741 ggatatattt ttaagtaaaa tacaaatttt ttctgcacta tatctaccta caagatctct
    10801 tcctttagtt tcattaacta tttcattggc gcagatttta attacttcat cgccaacttc
    10861 acggccgtat tcatcgttaa tcatttgaag attatctata tctaagaaag caaaagcaaa
    10921 ttcctcgtct tttgttgcta tttcgttaaa ataatcatct attccatcga ttaaagcatt
    10981 ataattttta accccagata caagatctaa aacattataa gtgcttaaaa attttttatc
    11041 atccatgtaa gataaacaac gatctaagcg acaattaaaa ctttctttgc ttaaaggctt
    11101 aaacaaatac tcattaactc catttttaaa agaattcgct tcaaatgaat cattatgatc
    11161 ccccaaaaga atcacaccta attcatcatc actaaaacgt tctcttactt gagtcaaaag
    11221 ctcaaaacca ctaattactg gcatattgac atctgctata ataagcttaa catcattatt
    11281 atcatttaaa taactcattg cttcttcacc atgagctgca gctaaaacat taaattgtct
    11341 ttgagtaagt atttttttaa tttcattacg ttcaggtagc ttgctcatag ctaaaatcac
    11401 tttagttttt gcatattgat taagttttac aatagaacta ataatctcat caatgcaagt
    11461 ttcactttct ttaaaaatat aatctaatat atctttatcc ataaattttt ctttagtagc
    11521 cttatcacca ctagccgtaa gaacaatagc aggaattttc ttttctataa cataatccac
    11581 aacttcacca tttggggcat ctggcaaaca taaatccaca aaagctaaaa aataatcatt
    11641 attcattaat tccttagctt cggcaaaacc aaaagcaata tctacctcat aatctaaagt
    11701 catttgaatt tttttagcta aaagtttgcc gagcatttta ttgtcatcaa taattaaaat
    11761 tttcttattc atagtgtgta aaataccttt atatctaaaa tttttaatat atttgtttca
    11821 aagaaaggaa attttatagt tatatattct aacatagtaa aataaaaaat ccgcttaatc
    11881 cttaaacaag gtcttagcaa attcgattgc ttcatcacta acaagctctc cacttaccat
    11941 cctagcaagc tctttaattc tttcttcttg atcaagcttt tttaccttac tttcttcacc
    12001 atttttttca actaaaaaat gattatgtgc cttagaggaa agttgaggca aatgagaaat
    12061 agcaaaaatt tgataaaact tagaaagttc ctctaaaacc ttagctatac tcatagcctc
    12121 ttttccgctt aaatttgcat caatttcatc taaaaataat atccctttgc ctgcatttaa
    12181 aatattacat tctgtggcta taaaagcaag tcttaagcga tttaattcac ccgaacttaa
    12241 attttttaaa tgagctaaat taatatctag cattatctca tctttaccta aaattgaaat
    12301 tttttcattt tctttaagcg tcaaacttgc atctttcata taaagatctt taagataatt
    12361 atttaaacat ttttctaatt ttttaaggtt tttctttctt gtttgagtta aaatttgtgc
    12421 tttttcttct aatttttgtt ttaattcttg aaattttttt tcaagttctt ttttttcaaa
    12481 acttaaattt tcataatgct ctagctcata ttttttttgt tttaaaactt ctaaagcatt
    12541 ttctatgctt tcataacgct tgataagata ggataaattt tcaatgcgat ctaaaagcgc
    12601 ctccacatca aaatccaaat cttccatttt ttgattttcg caaatcacac gcaattcatt
    12661 taaacattca ctaaaaaaac ttgcatcaac ttcgcttaaa tttaaagctt caataacaac
    12721 tttttcaagc tcaaaaatac gctctgcctt actccaagct tcttctaatt tatctttttt
    12781 agaaagcttt tttttaagta ttaaaagctc ttcatactca cctattttag gattaatgct
    12841 tgaaattttt tcaatttgca ctctagctaa ttcttttaat tcttctactt ttttttcttc
    12901 ttctaaaatt gcattaagct cattagaaat ttgactataa gcattaaaat cttttttaaa
    12961 atcttctaaa aaggaaataa aatttgtatt ttcttgcatt tctaaggcat ctaagagatt
    13021 taaaaatttt tcatttccaa attcgttatt ttcctttgcg cttaaatact taataaaagt
    13081 tttacttaaa ttttgcaaac tttttttcgc tatgctttga ttgttaataa aatattttgt
    13141 gtttttttct tttaaaagct taaaaacatt ctcctcttcg ctttctatgc caaaactttc
    13201 taaatctaac ttatcatcta gttctatttc gacaatttta gcctcacttt cactcaaaga
    13261 aaatgcggat aaaattcctt taaacaaaac tgattttcca gctccactta ggcctgtaaa
    13321 aacggtaagc cctttagaaa tttcaagctc agccttttta aaaccaagat tttctttcat
    13381 aaaaattcta tttatcatca atttccccag tgtaattttt cttttaaaat ttgaaaataa
    13441 tccctatttt ttgggtgaat taaagccaca tttttatcac ttaaacccac ttttatactt
    13501 ttaaaatcat tcattttata attttcttgc ccatcaatac aaagtatgca atcctttgcc
    13561 ataatctcta tttcaaaacc ttttggcaaa acaatagggc gttgtgttaa agaatgagaa
    13621 caaacaggag ttaagataaa agcttgagct aaagtataaa ctatgggccc atttgcactt
    13681 aaattataag ctgttgaacc cgcaggagtt gcaacaataa gcccatctcc aaaatattca
    13741 ttaaatttct tttcttttct aaaaacttct atatgagcca tagaagcttg attgttttta
    13801 ctgatgacca catcgttaaa agctaatttt tctaaaattt ttccttgctt atcttctaaa
    13861 aaaacactta acaaataagg cttttctatt ctaaattctc cttgaaaaaa agcttgaaaa
    13921 aaattttcag cttcatcaac tttaaaatct gttaaaaaac ctaaatgtcc agcatgaatt
    13981 cctaaaactg ctttatcata ttcacaagct ttacgacata aagaaatcaa agttccatct
    14041 ccacctaaag aaataacaaa atcagatatt ttaaacaaat catccaatcc atactttggc
    14101 aaatctaaaa tttcagaact ttctttaaac aatacaagct caactttata tatagataaa
    14161 atcgattgaa gttttaaaat ttccttatct aaactcacat tgggtcgtgt aacaagtccg
    14221 attgttttaa tatttttatg atctatttta ttttgcataa aaaattatat caaatcttag
    14281 caaagcaaaa gaataaaaat actataattt tgctcattat cttaaaaaat ctttttcaag
    14341 gaataaattt gcgaagtcat tataatacag acttgggaat ttcccatgtt ggtcaaagcg
    14401 ttaaactttg cggttgggta aatagctacc gcgatcatgg tggagttatt tttatagatt
    14461 taagagatag aagtggtatt atccaacttg tttgcgatcc aaatgatagc aaagaagctc
    14521 atgaaatcgc ttccaatgca agaaatgaat ttgtacttat tgcagaaggt gctattcgtc
    14581 cgcgtggcga aggacttgta aatcctaaat taaaaacagg agaaatcgaa gtagttgttt
    14641 ctaaacttac catagaaaat gaaagtgccg tacctccttt tgctatcgct gatgaaagtg
    14701 taaatgaaga attacgctta aaatatcgct ttttagattt aagaaatcct aaactttatg
    14761 aaaattttgc cttgcgttct aaagcttgta tagcagctag aaattctttg gcaaatatgg
    14821 gatttttaga agttgaaacc cctattctta ccaaagctac tcccgaaggt gcaagagatt
    14881 atctcgtgcc ttctcgtgtg catcagggtg aattttatgc tcttccacaa agccctcagc
    14941 ttttcaaaca acttttaatg tgtagcggtt ttgatcgtta ttttcaaatc gcaaaatgtt
    15001 ttagagatga agatttaaga gctgatcgcc aacctgaatt cacacaaatt gatgttgaaa
    15061 tgagtttttg cgaacaaaaa gatgtaatca atgtagctga aactttttta aaagatattt
    15121 tcaaagcttg cggcaaagaa attcaaaccc cttttagaca aatgcaatac aaagacgcta
    15181 tggaaaatta tggctctgat aagccagatt taagatttga tcttaaattt attgatgtga
    15241 ttgatatttt tgctaagtca aataatgaaa tttttgcaaa tattgccaaa gatacaaaga
    15301 aaaatcgcat caaagccata cgcgttccaa aaggcgatac tattttttca aaaagacaaa
    15361 tgcaaagatt tgaagaattt gtgcgtaaat ttggtgctca aggcttagct tttatacaag
    15421 ttaaagaaga tgggcttaaa ggtccacttt gtaaattctt tagcgaagaa gatttaaatg
    15481 agctaagcaa acgctgtgaa cttgaagtag gagatgtggt atttttcggt gcaggagcta
    15541 aaaaaacagt gcttgattat atgggaagat ttagaatttt cttagccaac gagttaaatc
    15601 ttatagatcc aaatgcctta gaattcttat gggttgttga ttttcctatg tttgagcaaa
    15661 atgatgatgg aagttattct gcgatgcacc atccttttac catgccaaaa aatatcgatg
    15721 agactgattt agaagaaatt tcatctattg cttatgatgt agtgttaaat ggcgttgagc
    15781 taggtggagg tagtataaga atccataaaa acgatattca acaaaaagta tttaaacttt
    15841 taaatatcga tgaagaacaa caaaaagaaa aatttggttt cttgcttgat gctttaagtt
    15901 ttggtgctcc accacatgga ggtatcgcta taggacttga tagactcatc atgctagtta
    15961 caggagcaaa cagtataaga gaggttatag cctttccaaa aacccaaaga gcgcaatgct
    16021 taatgacaga tgcaccatcg cctgctagca atgaagcaat gagagaattg ggaatcaaat
    16081 taagggagaa tataaaatga aagaattgtt tttaatcata ggtgcaccgg gtagtggaaa
    16141 aactaccgat gctagtttaa tcgcacaagc agatgcgaca aatatcacac actattcaac
    16201 aggagatctt ttaagagctg aagtagcaag tgggagtgag cttggaaaaa ctatagatag
    16261 ttttatatcc aaaggcaatc ttgttccttt agatgttgtt gtaaatacta tagtttgcgc
    16321 actaaaagct gctccaacta aaactattat catcgatggc tatccaagaa gcgtagaaca
    16381 aatgatggaa tttgacaagg ttttaagtga gcaaaatgaa atttgtctta aaggtgttat
    16441 agaagtaaga gtaagcgaag aagttgccaa agaaagagtt ttaggcagaa atcgtggtgc
    16501 agatgataat gaagaagtgt tttataatag aatgaaagtt tatacagaac ctttaaatga
    16561 aattttagat ttttatcaaa agaaaaaact tcattttatt atcgatgggg aacgcactat
    16621 cgaacctatc gttgcagaca tgaaagaact gattaaaaaa attcaaagta tataaggaga
    16681 aaaaatggat ttaagcaaaa tcaaaatcgg agatattcca aataaaatca atgccgtaat
    16741 cgaaattcca tacggctcaa gcatcaaata cgaaatcgat aaagatagtg gtgctatcat
    16801 ggtagatcgc gttatggcta gtgcgatgtt ttacccagca aactatggtt ttattgccaa
    16861 tactttggct gatgatggtg atcctgtgga tattttagtg cttaatgaat atcctatcca
    16921 agctggagcc gtgattcctt gtcgcttaat tggtgtttta atcatggaag atgaaagcgg
    16981 aatggatgaa aaacttcttg cagttccaaa ttcaaaaata gatgcaagat atgacaatat
    17041 aaaaacttac acggatttac cacaagcaac tttaaataaa atcaaaaatt tctttgaaac
    17101 ttataaaatt ttagagccaa acaaatgggt taaagtgcaa gattttaaag atgaaaaagc
    17161 tgcaattgaa attttagaaa aagcaatcaa aaactacaaa taatcctagc ccttcaaagg
    17221 gctaaactca aggaaaactc gcaatgaaaa atatcgtttt aggtggtggt tgtttttggt
    17281 gtgttgaagc cgtatttgaa cgcctaaaag gtgtaatcga tactgaagtt ggatatagcg
    17341 gaggaaatcc aaatcctagc tatgaaagcg tgtgtaatgg tgatggtaac atagaagttg
    17401 tcaaaataaa ttacgatgaa aaacaaatct ctcttcttga aatcttaaca ctctttttta
    17461 aaattcatga tccaacaagt atagataaac aaggtggaga tattggtata caatatcgct
    17521 caataatctt ttacgaaaat gaagaagata aaattttagc tcaaaatttc atcgaagaac
    17581 agcaaaaaat atttagcaaa aaaatagtta ctaaaatttc aagattgcaa acttactaca
    17641 aagctgaaaa ctatcatcaa cattatttta taaataatcc caatcaagga tattgtcaag
    17701 ctgtaatagc tccaaaactg caaaaaatac aatcagacta atttcatctt tttaaggtta
    17761 aaaaaatttc aactttattc acagcctttt cacgctgtga ttttcttttc aaagtactta
    17821 aaaatagaac tttaagcttt aaaataaaga aaaaattatt tattgttttt taagtttttt
    17881 tatgaatttg tatttaaatg tgaataattt tattaattaa cataatttcc taagcttagc
    17941 tataaaaaat ccatcatagt ctaagcttgg taaaatccgt ctacattttg aaatttcagc
    18001 aaattcttca ctttgccctg ctttagcctc aacattttcc aaatcaatat ctaaaagctc
    18061 taatttaaac tcgcttttta aagcattctc tatcacttct tcattttctt ccttggtaaa
    18121 ggtgcaagta ctatatacaa gctctccgcc tatttttaat gcctttaaag cagaatgtag
    18181 aagttttttt tgaatttttg caatattttt gatttcttta taactttttt ccaaatcaaa
    18241 acctatttta gcaaaagttg aacaaggtgc atcaagtaaa attttatcaa attttaaagg
    18301 acataaattg cctatatttt taccatcttt cataaaaact ttagcattca cgccgtaatt
    18361 tttaagattt ttttgcaaaa taaaaaatct atccctactc atctcattgc aagctaaata
    18421 acctgtattt tgcataaaat ttgcaagatt gatacttttg ccacccggag ctgcacacat
    18481 atcaagaaca ctttgccctg ctttgacctc taaatttaaa gcacacaaat aagaagaata
    18541 attttgtata taaaagtgcg cctcgttaaa agctttcata gagcttaaga tggctttatc
    18601 tttggcgtca aacaaataac aataagcgtt gatcttttta aattttaaat tttgttttaa
    18661 aaattctttt tctaattctt caatgctagt ttttaaagta tttgcaaata cacaaacatt
    18721 tttttcttga gcaaaagaag ataaaatatt ttgcatttca tctttagtat aaagtttttc
    18781 tattctagag agcaaaataa tcctttatca tgataaaagc ggataaagag tctaatttac
    18841 catctttttt gcgtgtattg gctacgccgt atcctaaagc ttctttactt gttccacttt
    18901 catctacaaa gcaaatttct ttatcaaatt caagcaaaga tacaaaatgc ttaatgcgtc
    18961 ttgtcatttc ttcttcgctt gatccaccct taggaatgcc tacaatgagt aaagaaattt
    19021 catgtatttt aagtaaattt ttgatttcat tggcagcttg attgcgattt tttcttaaaa
    19081 ctgcatctaa aggcaaagcg atctttttat ctacgcaaag cgctacacct atgcgtttta
    19141 aacctacatc taaagccaaa gctctcatac taaaaccctt ataaaaagcc cttcgatgga
    19201 aatttttccc tcaagttcat attcataaac tttttgtcca taaattttta aagcctcatc
    19261 aacactcaca ccttttttac aaaactctaa aaactcatct tgatttgtat ctatacttgc
    19321 aaactcactt acaaattctt taaaatcaca aattaacttt gctttatttt cctttaaaag
    19381 caaattagtc cctgtgcttt ctcctagtct ttgcggtaaa acatataaag gtttattgag
    19441 ttctaaagca agttttgcac tttgcataga accacttttt atatctgctt gtgcaaccac
    19501 aacggccttg cttaaagcaa taaccaaacg atttcttagt aaaaaatcat aattttttgg
    19561 caaataatca tcttcgtatt cgcttaaagc taaagcattt tcataaattt gtttaatgat
    19621 tttttcatta gttcttggat aaatttgatc taaaccattg gcaaaaatac ctatagtatt
    19681 tggcatagct gctatacttg cggtgatatc cacacccaaa gcaccaccac ttaccacaca
    19741 aagatgggca tttttaagca tgctcgctaa ggaaaaaaca caatttttcg tataaacact
    19801 catacgcctt gaacctataa tagcgatttt atcttgtttt aataaagata aatttccttt
    19861 atagtgtaat tttttaggag gtttttttaa atctttaaaa agttctaaaa attcatcagg
    19921 caaaatttca cttgccataa atttcactca aatacacaag atcaacgcct tttaacaaat
    19981 ccttactttg ctctaaagct ttaaaagtat ttttcctagg atgtcctatg gctataacaa
    20041 aacctttttt ttgtgcaagt tttaccgcac tttcaagttg ttttttaaca taattaacat
    20101 catcttcatt atccaaaaac acatctcttt gtatataagg catactgagt tctttagcga
    20161 ttttatttgc cttagaattt cctatagttt tagaatctac aaaaaatata ttttgatttt
    20221 ttaaagcctc gtaaagcttt ctcatagctt cttcattgct tgtaaataaa cttcctgtgt
    20281 gattattgat atatcttaaa tccttaaaat cttttttaat ttgcttgatt tttttaaaaa
    20341 ttctttcttt gctatcattt ggatttaaag tatcaatttc tggtttatta taattaattg
    20401 ctgctaaagg taaatgcacc atataaaaat caaattttaa agcaagtttt ggcgtttcac
    20461 tatggttttt atctggcgga aaaaaagaag gatttaactt taaatttaaa gcttttaaac
    20521 ctctaacctg acttgcattt gccatatcat cgataataat agcaagtttt ggttttttag
    20581 aaattttatt taaatgaata tcttcatcaa aagttaaatt ttgatcttgg gttaaatttg
    20641 tatcttttgg aataaaattt tgttctaaac tctgattttg ctctaaactt aaattctgct
    20701 ccacactgct taaattttgc tcatttaaac ttgtatttaa atcatcgatt tcttgaattt
    20761 tttgctctaa aatacttaca gatttattat tatcaaactc attctcttga aaaataccaa
    20821 tttcataatg atctttattt gatgaaatta aatcttcttg tttatcaata aaataatccg
    20881 gcttaacaga aaaaacatct tgggaatttt gatattttac taaaattccc aaagctaaag
    20941 ctatacaaag taaaaaaagt atagctatga ttaaataacg ctgaatttga actaattttt
    21001 tctttgacaa tgtttaattc ttatctttat ctactaattt tttagcactg atccaaggca
    21061 tcatagcacg caaattgcgc cctgtttttt ctatcaaaga atcattcata tttttgcgtt
    21121 ctgcatgcat tctagcaaaa cctgcacggc gttctaagat aaaatctttt gcaaaaacac
    21181 cattttgtat atcttttaaa acacctttca tcgctttttt agtctcttca gtaacaatct
    21241 ttggtcctgt aatataatcg ccgtattctg cagtatttga gatagaataa cgcatatctg
    21301 caataccacc ttgataaatc aaatccacaa tgagtttcat ttcatgcaaa cactcaaaat
    21361 aagccatttc gggttcataa cctgcttcaa ccaaagtctc aaaacctgct tgaatcaaag
    21421 cactaagccc accacaaagc acagcttgtt caccaaaaag atctgtttct gtttcggctt
    21481 taaaggttgt ttctataata cctgtgcgtc cgcccccaat cgcacttgca taacttaagg
    21541 ctaaattttt agcattttta ctttcatctt gatggatggc tattaaacaa ggagttccac
    21601 ctcctaaagt aaattcattt cttactgtgt gtcctggtgc tttaggtgct atcatgataa
    21661 catctatacc ttttggagca acaatttgac catagtggat attaaaaccg tgcgcaaaag
    21721 ctatagcctt gccttcactt aaatttggtt ttatttcgac attaaaaata tctgcttgaa
    21781 tttcatcagg agctaaaatc ataaccacat ctgctgtctt agaagcctcg cttacactca
    21841 ttacttcaaa accagcattt tttgctttaa cagcacttac actaccttca cgaagtccga
    21901 taattacatt tacgccatta tctcttaaat tcatcgcatg agcgtgtcct tgagagccaa
    21961 agcctataat tgctactttt tttgatttga ttaaatttaa atcacaatct ttatcataat
    22021 atactgtaat agccatattc actccttaaa aattcaaaaa ttaaaggtat tattatagca
    22081 attaaagtat aaatttcata ttttttttat aaactttatg taagaatttt acaaaaaatc
    22141 ataaagtatc aaaagtgaaa gaatttttaa acagtcttag ttatggcatt agctctcacg
    22201 aagtaagcaa tgaatttaaa caaattttaa gagagctttt agctaatcat atcatcaaag
    22261 aacacaaaaa caaatactat cttaacaatg gttttgcctt tggagtactt gatatttcaa
    22321 gcaaaggcac aggtttttta caatgctttg atgaaagttt caaaaaagat cttttgatag
    22381 aaaacaaaaa cctaaaaggt gcaaactata aagatatagt cgcagtaaaa cttctacctt
    22441 taaagaaaaa acgccccagt gcaaaggtga ttttagttct aaaaagagcc aatgaaacct
    22501 ctttagtgat caccaaaagg tacggcgaag ccgtgcttgg aatgaatatc aaaacaggat
    22561 taagcactgc cttaaaagct tctcaaaaat ccttaaaagc actaccttta gggacaattt
    22621 taaaaataga aaatgaaaat aacaatatca tagaagtttt aggacatatc gatgatgaaa
    22681 gcgtagatga aaaaatctcc ttagctcttt ttaataaaaa taacgaattt agcgacgctt
    22741 gcatcaaaga agctctagca aacggcgata gtgttgatgc gagtatgtat gaaaatcgca
    22801 tggatttaag agccttgcct ttttgcacca tagatcctat acatgcaaaa gattttgatg
    22861 atgcgattta ttttgacatc caaaaacgag aaatttatgt agctattgct gatgttagcg
    22921 aatatgttta tgcttatagt gctatagata aagaagcaag aaatcgtgga ttttctattt
    22981 attttccaca tattgctata cctatgctac ctcgtccttt aagtgaaaat atctgttctt
    23041 taaaacctca tttagatcgc ttagcgtatt gttttaaaat cgcactcgat catgaaaata
    23101 aggtcataaa agaagaactt tttgaaggta ttatcaactc aaaacgccgt tttaattacg
    23161 atgaagttga tgaaattttg atacaaaaac ctgatttaaa agagctttca tggctttatg
    23221 agctttttga aatcacaaaa aatttacgca aaatgcgtct taaaaatgcc tttgaatttc
    23281 gcaccgaaga attaagaatg aatttagatg aaaatttaag tctaaaaagc acagtttttg
    23341 aaaaagacac gccttcgcat aatttaatcg aagattgtat gcttttagct aataaagccg
    23401 cagcaaaact catagatata ggtgttttta ggaatcactt aagtgctgat gcaagaaaaa
    23461 tcgataagct tttaaatgaa ttacgcgaac taggcatcga tgtaaatttt aaacccaatc
    23521 ttcctgaact catacgcgac atacaagctt tatccgatga gttaaattta agagcagaag
    23581 tagataaact catcatcaaa gcacaaaaaa aagcggaata ctctagcata aatgcggggc
    23641 attttggctt aggttttgat aaatactcac attttacaag ccctataaga aggtattctg
    23701 atcttatttt acacagactt ttaaaagcca aacaaaaaaa cgatgaaaaa ctttttaatt
    23761 atctactttt aaacatagaa agcacttgcg agagtcttag tacgcttgaa agagaggcgg
    23821 ataaggttgc ttttgatttt atggatagaa aatttgctag atgggcagct aaaaatatag
    23881 gcaaaaaatt taaagcttta gttgtgcaaa atgatggagt ttgcatagct aaactagatg
    23941 atgaaatcaa aggagcagat ataatccttt atgatacacg tgtgaatttg ctagaaagtg
    24001 ttgaagtgca aatcatggaa gctgatatag ttatggcaaa aatttatgct aaaatcaccc
    24061 aaagacttat aaaggaagaa aatgtataga aaagagcttc aaaccctact ttctaaagat
    24121 tcaataccta attttttctt tctttatgga gcagataatt ttcaaagcga actttatgct
    24181 gaatttataa aagaaaaata taagcccgat gaaactttaa aacttttttt tgaagaatac
    24241 aacttcactc gtgcaagtga ttttttaagc gcaggatcgc tttttagcga aaaaaaatta
    24301 ctagaaatca aaacttctaa aaaaattcca acaaaagatc ttaaaatttt agtcgaactt
    24361 tgcaaaaaca atacgaacaa tttctttctt ttagagcttt atgatgaaaa ttctaaacaa
    24421 agcgatatag aaaaaatttt ctctcctcat tttgcaagat ttttcaaagc taacggagct
    24481 aaagaaggcg tggagctttt aagtataaaa gcaaaacaac taggggttga aatcactcaa
    24541 aatgctttat ttaccctttt tacaagtttt gatgagaatt tatatcttgc tgcgagtgaa
    24601 cttaataaat ttagcggttt aagagtagat gaaaaaacca tagaacaata ctgctatagt
    24661 ttgaatacag gaagttttga aagctttttt gagaaaattt taaaaaaaca agactttaaa
    24721 agcgaacttg aaaaaatttt agacaatttt aatgaaattg ctttaatcaa ctctttatat
    24781 aattcttttt atcgtttatt taaaatcgca ctttatgcta aagtcaatgg taaaatcgat
    24841 tttaaagatc ttttaggcta tactccacct cctcaagtgg gacaaaattt aagctctcaa
    24901 gcctttagtt taaaaataga acaatataaa gaaattttca ctcttttact taaatgcgaa
    24961 tacgagctta aaaccaattc taagctcgta aaaaaagaat ttttgatttc aaatttactt
    25021 aaacttgcaa ggattttgaa aagctaaata gtaaaattat aaaaattaaa atcacttttt
    25081 ttattataaa actaaaaaat gttgctataa tacttttaat aaaaacaaaa ggaatgaaaa
    25141 tggattttga aaatcaatta aatgctatcg ttgaaacaat agctgaacgc aaaacacttg
    25201 tcaatactga agaagctaca aaaatgactt ttataatgcc ttttttaaaa acattaggtt
    25261 atgatgtttt taaccctagt attgttgtgc cagaatatac agcagatata ggaactaaaa
    25321 aaggcgaaaa agtggattat gctattttca aagattcaaa accttttatt ttaattgaag
    25381 ctaaaaatca tactgaaaat ttagataatc ataacaatca gcttgtaaga tattttaaca
    25441 ctaatcctag tattaaattt gccattctta ccaatggtat tgaatataga ttttttacag
    25501 atattgaaca acaaaatctt atggataaaa taccattttt agttgttaat cttgaaaaac
    25561 ttaaacctag agatattaaa gatctaaaac gttttatttg cactgactta aacttagatg
    25621 aaattctaag cattgctatg gagaaaaaat attaccgaag tatacaagaa atttttaaaa
    25681 gtgaaataga aaatccaagc gatgaattta caagtttttt tgctaaacaa atgacagaaa
    25741 aaagaatgac tagtgctgtt ttagaagaat tcaaaaatta cattaaaaaa tcttttaaag
    25801 aaattattaa tgatttagct tatgaaaaaa tcacaagcat taaaaacaat cttcaaaaca
    25861 taaacgatga tgaaaatgat gagcaaattg atgaaagtaa agatattgtc acaacagaag
    25921 aagaattaca aggtttctat atagtaaaat caattcttgc tagtgtcagc gccaatcttg
    25981 aagatgtaag ttacaaagat actttaagct attttagtat tttatatcaa ggcaaagtta
    26041 ctaagtggat atgtagatta tattttaata caagcaaaaa atctattagt tttccggatg
    26101 gagcaagtta taatatagaa aaattagaag atatttatca atataaagca gatattatca
    26161 aagcatttga aagcagaaag taaaatcatt tattgatttt actttcactc catcacaagt
    26221 cgcataagat gtaagtcctc accttgtgtg attttatatt ctatactttg acatttagga
    26281 cacttaaaaa cattttcttc taaaatactt gtttgatcgc attttaaaca taaaatttca
    26341 agtggggcaa gttctataaa aagtttagca tttttacaaa tatttgagtt ttctttaaaa
    26401 gtttcaaaac aacgcttaaa aagatcaact tctataccgc ttaaacgccc aatttttaca
    26461 taaatttctt gtacattgta agccttattg tttaaggcat tttcttcaca aagttcgatt
    26521 aaagattcta ctatacttaa ttcgtgcatt agcaaattct tggtaaaagt tcgcctttag
    26581 ggctttctaa aaagcgtttt gctccataag cgttttgtaa gatcacgcgt gcttttttct
    26641 cttctaaaac ttctcctata atactcgcat ttacattgta tttttttaga atttccaagg
    26701 cttttaaccc atcttctttt tccacacaaa gtataaaagt gccttcattt gcaagctcat
    26761 aggcttcata accaaaaagc tcgcaaagtc ctaaaacctc atcttgaacg atgatttttt
    26821 cttcaaagat caaaagatca tttccacttt gctttgccca ctcatttaaa accgcactaa
    26881 gtcccccacg agtagcatct ctcattgcta caacctttat atctttttct aaaagctcta
    26941 aaacctcttt atctaaagcc ttacaatcac ttttaacatt agcttctaac tcatttcttt
    27001 tgattaaaac actagctcca tgccttccta tatcacctga aagaagtatg ctaagccctg
    27061 ctttgatatt tttactttct tttttagaaa taatttcacc taaggctgta gtgttgatat
    27121 aaatttcatc tgctttaccc ttaggaacaa ctttagtatc gccacaaact aacataactc
    27181 cacatttttc acattcttct ttaatgcttt ttaaaatacg ttctaatttt tctagctcaa
    27241 aaccttcttc taagataagc cctaagctta gatattttgg cttagcaccc accatcaaaa
    27301 catcattaat agaaccacaa acacaaagtt tacctatatt aacctcttca tctaaaaaaa
    27361 tcggacttaa aacaaaagaa tccgtgctta aagccaaatt tcccaaaatc gctgcatcat
    27421 tatttgcgtt taaaatttca ttatcaaaga tcttaaaaag cttagttaaa agctcattca
    27481 tctcttctcc accgcctccg tgggctaagg aaatattttt catgcattca cctttgagta
    27541 tttataatac gccgcacaag caccctcgcc agaaaccata caacttccta taggacttct
    27601 tggcgtacaa gccttgccaa aaactttaca atcataaggc ttggccaaac ctcttaaaat
    27661 ttgcccacaa atacaggctt tgctttcatt tttactttgc accgcacaat caaatttttt
    27721 actcgcatcg taagcgctaa attcttcttt taactccaag cctccatctt taataagtcc
    27781 taagccacga aattcaaaat cacacaccct aaagtatttt tttactaaat tttgtgcttt
    27841 aacattgcct tctttgctta cggctctttt gtattgatta tacactttaa aagtgccttc
    27901 attgctttgt tttatgatat ttaacacact ttctaaaata tcaactggct caaaaccact
    27961 caccgctata ggggttttaa attttgctgc taaaggctca taaataccac aacctgttat
    28021 cacactcaca tgagaaggac ctaaaaaagc attgattttt acattttcat cattcatgat
    28081 cgcttctaca ggtgctggaa ctgtgatatg attgatatga aaaaagacat tatttatttt
    28141 ttcttctata accttttgaa gaagtaaagc actcataggc gtagtagttt caaaacctat
    28201 agcaaaaaag atgatatttt tgtttaaatt ttgcttagca atttccaaaa cctcaagtgg
    28261 agaataaagc gctctaacat cagccccttt agctcttaaa tccagtaaag aaatttcact
    28321 tccaggcacc cttaaaagat cccctaaagt acaaaaaatc gtatctttca tggaggctaa
    28381 cttgatagct gtatcaatgc gaactcttgg cataacacaa acaggacatc ctggcccatg
    28441 gataaagtta atttcctttg gcaaaataga aggcaaagca tatttcatga tactatgcgt
    28501 atgcccaccg caaatttcca tgatattaat aggattttta agttcttgtt ctatgagttt
    28561 ttttaaagct aaaatgcttt ctttatctct aaattcatcg atgaaattca tttaaaccca
    28621 aatctccttc atcacttttt atctctccac tattcatttt ttctactatt tcttgatagg
    28681 ttttaatgct ttctagtgca gcttctttgt cgattttttc catagcaacg cctacatgga
    28741 ttaatacata atcgccttgt tttaaaggtt catcaatcaa atccaaatta acttttcttt
    28801 tcacgcctaa agtttgtact aaagcattgt ttaactcatc gatttctaaa atttcagaag
    28861 gtatagacaa acacattaaa aaagctcctt tttaagttta agcaccttat accaaagctc
    28921 catattggtg ccattttttg catcaagggt gataatatct gctctaggat ttaattcttt
    28981 aatcaaccta gtcgcctctt taatatcgaa atcaaaatga tgggccaaat ctacctttgt
    29041 gattaaaact atatcagcct ttttaaacat cacagggtat ttttgcggtt tatcacttcc
    29101 ttcagttatc gaaagcaaaa ccacatttaa atgctctcct aaatcataac ttgcaggaca
    29161 aaccaaattt ccaacatttt ctataaaaag caaatccaca tcatcaatgg ctaaatgatg
    29221 caaagcctca tgcaccataa aagcgtccaa atgacagctt tgtcctgtag tgatttgata
    29281 cgccaaagct ccggcatttt ttacccttag agcgtcatta ttggtttcta aatccccttc
    29341 aatcacagca attttaagtt catttttcaa agccttaatc gtgctttcta aaagcgtggt
    29401 ttttccacta cctggggaac tcattaaatt aatacaaagc gtgttagctt cattaaaatg
    29461 cgctctattg tgcttagctt cttcatcatt tttgcttaaa attttagaaa tcacttctat
    29521 ggttttgctt tcttttaaac ttggattttc atgatggtgg tcgtgatgat gaccatgcgt
    29581 atggcttgaa tttatagagc agccgcaatc tttacacatt ttctttcctt atatattttt
    29641 tgtttcattt taaccttaaa agcattaaaa aattatgagt ttttagaata tttgctttat
    29701 ttttctaaat ttaaaaaatg caccatttgt cctaaggcta tggaactatc attacaaggg
    29761 tactttaaag gtataaaaaa atcaaaattt ttagctttta aaatttcaag caaggttttg
    29821 ttttgaaaaa ctcctccact taaaagcact tttaaatcat aatctttgct aaaatctatg
    29881 ataaaatttg ctaaggcatt aaacatacct gtaattgcct tagttttttc atcttgtaaa
    29941 gcccctagga ttaaattttt aaaattagcc tgcccttttt ctataaaaag cttataagaa
    30001 aaatcaagat ttttatcata aaaagcttca cacattaagc caacttgggc ttcataagaa
    30061 cttttttcta agttaaaaac aatacttcca aaagcatcga taatgcgtcc taaagagctt
    30121 gtttgtaagt tagattgaga ataaattttt ttaagatttt caagtttgat ttttggaatt
    30181 tttgctaaaa actccttagc cttatcttct aaatcataat gaaaaataag acttagagcc
    30241 aaattttgta tatttttaat atcactattt ataagagtga aattttcaaa atgtgcaatt
    30301 ctttcatatt cttttaaatt tcctacaaaa acttctccac cccaaatttt gccatcttcg
    30361 ccataacctg ttccatcaca aataaaagct aaagcctttt catcttttgc aaaattttct
    30421 tcgtattcaa aataagccgc acaaaaatgc gcataatgat gagaaatttt aatcctttct
    30481 tcaaattctt ttgcatagct aaaatgcggg tgtttatcgc acaaaatcgc atcaaatttc
    30541 aaatcataat tttgtttaaa aaattctaaa agtttaaaaa atctctcatg cacatcaaga
    30601 cttttcaaat cccctatata aggagaaatt aaaagtttat tttcataaaa aatcacaaat
    30661 tcatttttaa gttccgcacc caaagctaaa aaagtgcctt ttttattaaa atttctttcc
    30721 aaataaaagg ggtttaaacc ccttgaagta cgcaaaaaca tagttttgcc atttaccact
    30781 tgagcgatgc tatcatcact tgcattgata atttccctat cataatccaa ataaaaatca
    30841 aaaactttat caagtttttg acgcaaatta aactcatctt taatgatact ttctccgctt
    30901 aaattcgcac ttgttgccac aagatttcct ttaaaatact caaaaagcaa aagatgtaaa
    30961 ggcgtataag ctagcataat gccgatttta tctacatcag gagcgattaa agaaaaggct
    31021 ttttttgcct ttaaaatcac aataggagcc aaaaccccac caagcaaagc ttcttctttt
    31081 tcatctataa aggcaagttc tttagcactt tgtaaatctt tacacatcaa agcaaagggt
    31141 tttttggggc gattttttct aagtcttaga gtttttaaag cttcttcatt aaacgcatca
    31201 cacatgagat gaaaaccgcc catgccttta atggctaaaa ttttaccttc ctttaaaaac
    31261 ttcgcacttt gtataaaagc ttcttgatct ttggctaaaa tttcaccctt tggattttta
    31321 agaaaaacat tgattttgca tttaggacaa ctaataggct gggcatgaaa acgcctattt
    31381 ttaggatctt cgtattcgct tttacaaaac tcacacatca ataattcttg catagaggta
    31441 ttaaatctat cataaggaag actttttata atactaaagc gtggcccaca atgtgtgcaa
    31501 gtgataaaag gatataaaaa gcgtggattt ttttcatcaa aaaattcttt tttacactcc
    31561 ttacaaaacg caaaatcgct taacataggc gtgctttttg tattctctaa agaaggagta
    31621 atgctaaaat tctcatagtt tgaaattgaa atttgcgtga ttataagctg atctattctt
    31681 gctaaaggtg gaagatgatt ttttaaattt tctatgaaat tttcacattc tttttgagtg
    31741 caagcaagga tgatttctat cccaaaacca tcatttctta cttctccaaa aagctttgat
    31801 ttcaaagcta gttcataaac taaggggcga aaacccaccc cttgaactag acctgaaatt
    31861 ttgatcttat accctaagtg gcgcatcgct taactgacaa tttttaagat gttttaaagt
    31921 atttttaagt aaagatttat gttcaaacaa agatccactt ataagtgcta aatcactttg
    31981 ctttttctct cttaattcat cataagtatc acgcaagaaa taagccaaac tctcaaccgc
    32041 tccataagcg atattagcac tatctacacc tgctaacata aaactcatgg cagatcttaa
    32101 agtccttgta taatcaaaac ttttatcttc tttcaaacga taatcaatct ttactccacg
    32161 aggcattttt gactcatcag cgatttttaa aagctcacta gcactctctt gtaaatttct
    32221 acccaaattt agcactctac ccagcaagct aagcaaggaa taaaaattgt tttgaagctc
    32281 aaaattttca tctaaaagag gaaattcctt gttaaaattt tctaaaagcc ttgcaccaat
    32341 ttcatctttt ttaatctctt cataaagttc tttgctgtgt tttggtaagc aaagtttaag
    32401 taaattaagc tctttattga taagcaaaat atcttcataa tccttactta gctctaaaat
    32461 aaaagctttt tctttataac ggcttacaag ataagaaatt cttgccatat ttttatcttc
    32521 tttagaaaaa ataagctctc ttgccttagc attgataaat tcaaaaccct ctaaaaccac
    32581 cacttgctca tctaaagcac tgatataaaa atctttttga tactcttcta tcttttttac
    32641 gcttaaaaat ttatactcat tttcaaaaag tttcaaacct aaagcaaaac aaaataaatc
    32701 cctagcaagt ctaattttaa aatcactaaa atcaagattg tgattttttc taaacatagc
    32761 attaagcctt agcttcatca aaggtttttc taaacttgca agaagtttta aattttcatt
    32821 tgaacaaaca aaaactgaat ttatagcctt aatatcacaa ggaagtaaaa aatctcctat
    32881 aaattcgttc ttaaacaaag aaaattcata aataccattt ttatctttca aataaatctt
    32941 tttttcttga cttaacaaat caaaggcaag atttaaaaaa gtattgaaat tttcttcatt
    33001 gattttttca aattctgata aattgcttga aaattcacac tcacaaaaca cgccccattc
    33061 gtttttgttt aaaagttttt tttcttgata agcattagaa tttaaatgag taatataaga
    33121 aaatcttgaa aattctttat cttctggtat acaagggtta aaaccctgcc ccgcttttac
    33181 atcaaatttt ttcaaaaaaa cgctatgact catgaaattc aaagaatcgc aaaaagtctt
    33241 taaattttct tcatctgcat cgatagaaaa atgataagta ttttcttctt tactaaggat
    33301 ataattgtaa tttttcgcat aaaaacgcaa taaatattca aaaatatcat tatctgcatt
    33361 ataaataaaa tcaaaatcca aagtcatatt atgccttttt tgaaaaataa actataaata
    33421 taacattttt aacttaaaaa ttctttctct ctttgcctaa aatcactcat aaaatgctct
    33481 ataaaagtat aaaattcttt gctatgattg ggaaatttta aatggctaat ttcatgcaaa
    33541 atcacatatt caatagctct taaacttttt tgaatgagtt ttaaatttaa attaatataa
    33601 gctttattgt gattgcaaga accccaacgt gttttcatat ttttaatgct taaatgcgtg
    33661 taaaataagc ctgttttttt actccatttt ttaagataaa aagtaaaaat ctttttagca
    33721 ttttgtctta aaaataaatc caattttgct ttattttgac aaattatttt atctttatca
    33781 aaataaattt ttttggcatt ttcatcaaaa ataatttgat attttttagc taaaaagatt
    33841 aactcatcat cttttaaaac ttttttttca aatcttgttt ttgcctcatt catccaagaa
    33901 cttgatttat ctaaaaactc ataaacactt ttaaaggtgc aaaaataagg aatactaaga
    33961 acaaattcac ccttttcatt tagccttaat cttaaagttt ttatgcattt tttagaataa
    34021 aaatagcact catctttata aataaatgat tttaaactag agctttgcct tgccattttt
    34081 tacttttcca tctgtatgaa tttaccattc cacgcaaaaa ttcatctgca caaaatccta
    34141 tccaaactcc taaaattcca agattaaaat gaaaacaaag cacataaccc acaggcaaag
    34201 atacccccat cataaaaaca agtccgctaa aaaatggaaa cttagcatcg ccacttgcgc
    34261 gcaaggaatt aaccataact atattaaaag ttcgtgaaat ttcaagaaag attgaaagag
    34321 caaataaagg tatcattaaa ttttttagct cttctttaag ccctaaaatt tgcatagtaa
    34381 aatcttgaca aagatagttt aaaaacgcca ctaaagcact cgctattaca ctaaaatata
    34441 aagcacgcca agcatgttta taagcgatat tttcatatct agcaccgact aatttaccta
    34501 ctatgatttc attagctatg ctcgtagctt gtcctataag catgataagc attgaaattt
    34561 gaaaataaat cgtttgcaca ctcaaactcg cctcacctaa gcttgctaca aaagcaaaag
    34621 ctatagtata ttggactatc cacaaaagat tttcccctgc tgaaaatcct cctatattta
    34681 aaaccttttt taaaacttct ttttcaagtt ttatcatttc tttgatttta agatgaattt
    34741 taagtttata aaaaagtatc gcaaacaaag caactatagc aacaatgcga gcaaaaatat
    34801 tactaagccc tattccaaaa agttctgact ttgtataatg caaaacataa taatttccac
    34861 aaatcaccac tatatccatc aaaaaaccta taaacatgac ccaataagcc atattataaa
    34921 cccttacaat agcagctaaa acaataccta tggcatcaaa aaacaaacaa attgcaagca
    34981 tatgtaagta aatttcgcta tctttgagca attcttgtgg aatttttaaa agataaagca
    35041 aatactcccc atgccataaa ataagcacac cgcatacaaa gcctaaaagt gcatttaaga
    35101 acaaactttg atgaatcact tttcttgcta aaacatgatc ttttgcacca attgcttgtg
    35161 cgatcaccac actacaaccc acacttaaaa atgaaaaaat agtgataaaa agatctaaaa
    35221 tttgatttcc agcgcccata gcaccaacaa gaaaattaga ataatgcgac accatagcgg
    35281 tattgataat cacggttaaa tacttagaaa gcaaatccca aaatatagga aaactaagtc
    35341 ttgttaagga gagttgtttt tttgccatga tgttatctta tctctttttt taaatatttt
    35401 tttaaaaaac aattctactt aaaaattact tttttaaata taaacattta atatactca
//
LOCUS       DAPIWU010000005        34880 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.005, whole genome shotgun sequence.
ACCESSION   DAPIWU010000005 DAPIWU010000000
VERSION     DAPIWU010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 34880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34880
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.005"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            103..858
                     /gene="proB"
                     /locus_tag="RJ285_000177"
     CDS             103..858
                     /gene="proB"
                     /locus_tag="RJ285_000177"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDV7382997.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            932..1849
                     /locus_tag="RJ285_000178"
     CDS             932..1849
                     /locus_tag="RJ285_000178"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDV7382998.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            1812..2465
                     /locus_tag="RJ285_000179"
     CDS             1812..2465
                     /locus_tag="RJ285_000179"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDV7382999.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCKQIRNGKIDENFAIYALEQIN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            2462..3247
                     /locus_tag="RJ285_000180"
     CDS             2462..3247
                     /locus_tag="RJ285_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDV7383000.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            3253..4089
                     /locus_tag="RJ285_000181"
     CDS             3253..4089
                     /locus_tag="RJ285_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HDV7383001.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLGQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            4150..4575
                     /locus_tag="RJ285_000182"
     CDS             4150..4575
                     /locus_tag="RJ285_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HDV7383002.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLGVNDELEAIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAVQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            4586..5098
                     /locus_tag="RJ285_000183"
     CDS             4586..5098
                     /locus_tag="RJ285_000183"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDV7383003.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVENIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            5101..5622
                     /locus_tag="RJ285_000184"
     CDS             5101..5622
                     /locus_tag="RJ285_000184"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDV7383004.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFV
                     GIVYSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKA
                     LQNKLNEYILKII"
     gene            5636..7141
                     /gene="atpA"
                     /locus_tag="RJ285_000185"
     CDS             5636..7141
                     /gene="atpA"
                     /locus_tag="RJ285_000185"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDV7383005.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFDNGDKGMALNLEESSVGIVILGKGEGLKEGTSVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINSNEFRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQKGQGVVCIYVAIGQKQSTVAQVVKRLEEHGAM
                     DYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIEEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            7150..8034
                     /locus_tag="RJ285_000186"
     CDS             7150..8034
                     /locus_tag="RJ285_000186"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDV7383006.1"
                     /translation="MSNLKEIKRKIKSVYNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLIKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            8059..9456
                     /gene="atpD"
                     /locus_tag="RJ285_000187"
     CDS             8059..9456
                     /gene="atpD"
                     /locus_tag="RJ285_000187"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDV7383007.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            9460..9849
                     /locus_tag="RJ285_000188"
     CDS             9460..9849
                     /locus_tag="RJ285_000188"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDV7383008.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            9849..10403
                     /locus_tag="RJ285_000189"
     CDS             9849..10403
                     /locus_tag="RJ285_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7383009.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            10412..10801
                     /locus_tag="RJ285_000190"
     CDS             10412..10801
                     /locus_tag="RJ285_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HDV7383010.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     NLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            10804..11583
                     /locus_tag="RJ285_000191"
     CDS             10804..11583
                     /locus_tag="RJ285_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HDV7383011.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQVDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEAKVKND"
     gene            11593..12801
                     /gene="tolB"
                     /locus_tag="RJ285_000192"
     CDS             11593..12801
                     /gene="tolB"
                     /locus_tag="RJ285_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDV7383012.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            12878..13375
                     /gene="pal"
                     /locus_tag="RJ285_000193"
     CDS             12878..13375
                     /gene="pal"
                     /locus_tag="RJ285_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HDV7383013.1"
                     /translation="MKKILFISIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            13379..14326
                     /locus_tag="RJ285_000194"
     CDS             13379..14326
                     /locus_tag="RJ285_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDV7383014.1"
                     /translation="MKKIFTVALLGATLLYAENSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            14341..14910
                     /locus_tag="RJ285_000195"
     CDS             14341..14910
                     /locus_tag="RJ285_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7383015.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            14910..15830
                     /gene="fabD"
                     /locus_tag="RJ285_000196"
     CDS             14910..15830
                     /gene="fabD"
                     /locus_tag="RJ285_000196"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDV7383016.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVVSNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            15827..16516
                     /gene="pfs"
                     /locus_tag="RJ285_000197"
     CDS             15827..16516
                     /gene="pfs"
                     /locus_tag="RJ285_000197"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HDV7383017.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            16513..17268
                     /locus_tag="RJ285_000198"
     CDS             16513..17268
                     /locus_tag="RJ285_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDV7383018.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            17273..17794
                     /locus_tag="RJ285_000199"
     CDS             17273..17794
                     /locus_tag="RJ285_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HDV7383019.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            17794..18408
                     /gene="recO"
                     /locus_tag="RJ285_000200"
     CDS             17794..18408
                     /gene="recO"
                     /locus_tag="RJ285_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HDV7383020.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALDENPSFLPRLKDVLHLGFVWIMDREKMLIWQEFIRLLYRHLKDVEELDGFYF
                     DLLDECVKRFEKQNSKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHPQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            18405..18812
                     /gene="ybeY"
                     /locus_tag="RJ285_000201"
     CDS             18405..18812
                     /gene="ybeY"
                     /locus_tag="RJ285_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDV7383021.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAILHLLGF
                     DHENDNGEMREKEKELIDHFNLPKSLIVRTLED"
     gene            18937..20161
                     /locus_tag="RJ285_000202"
                     /pseudo
     CDS             18937..20161
                     /locus_tag="RJ285_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277985.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(20185..21111)
                     /locus_tag="RJ285_000203"
     CDS             complement(20185..21111)
                     /locus_tag="RJ285_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HDV7383022.1"
                     /translation="MIDFSKKPLFLAPMAGFSDPPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKTDYESIANAKASVKIPVIANGDINTQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDEVNRIDNTEKMRKKIEEFFSLA"
     gene            complement(21108..22094)
                     /locus_tag="RJ285_000204"
     CDS             complement(21108..22094)
                     /locus_tag="RJ285_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383023.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(22084..22446)
                     /gene="dksA"
                     /locus_tag="RJ285_000205"
     CDS             complement(22084..22446)
                     /gene="dksA"
                     /locus_tag="RJ285_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HDV7383024.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCCQIAEQGKKHEN"
     gene            complement(22458..22907)
                     /locus_tag="RJ285_000206"
     CDS             complement(22458..22907)
                     /locus_tag="RJ285_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDV7383025.1"
                     /translation="MQVNIFCIQKNDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(22909..23751)
                     /locus_tag="RJ285_000207"
     CDS             complement(22909..23751)
                     /locus_tag="RJ285_000207"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HDV7383026.1"
                     /translation="MNFADIFSKIRRQQPSIKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTPLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(23760..24482)
                     /locus_tag="RJ285_000208"
     CDS             complement(23760..24482)
                     /locus_tag="RJ285_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HDV7383027.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFKNNQAFKSNLSDPKYSPLTPNLFPKIGIVEKISFYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(24482..26701)
                     /gene="bamA"
                     /locus_tag="RJ285_000209"
     CDS             complement(24482..26701)
                     /gene="bamA"
                     /locus_tag="RJ285_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDV7383028.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINITGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEIGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            26778..27605
                     /locus_tag="RJ285_000210"
     CDS             26778..27605
                     /locus_tag="RJ285_000210"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HDV7383029.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            27685..29058
                     /locus_tag="RJ285_000211"
     CDS             27685..29058
                     /locus_tag="RJ285_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7383030.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            29058..29942
                     /locus_tag="RJ285_000212"
     CDS             29058..29942
                     /locus_tag="RJ285_000212"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDV7383031.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            29981..30382
                     /locus_tag="RJ285_000213"
     CDS             29981..30382
                     /locus_tag="RJ285_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HDV7383032.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPVEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            30391..31269
                     /locus_tag="RJ285_000214"
     CDS             30391..31269
                     /locus_tag="RJ285_000214"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDV7383033.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKECILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            31294..31551
                     /locus_tag="RJ285_000215"
     CDS             31294..31551
                     /locus_tag="RJ285_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HDV7383034.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            31538..34153
                     /gene="infB"
                     /locus_tag="RJ285_000216"
     CDS             31538..34153
                     /gene="infB"
                     /locus_tag="RJ285_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDV7383035.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGFEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERA
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCI
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            34150..34512
                     /gene="rbfA"
                     /locus_tag="RJ285_000217"
     CDS             34150..34512
                     /gene="rbfA"
                     /locus_tag="RJ285_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDV7383036.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            34502..>34880
                     /gene="rimP"
                     /locus_tag="RJ285_000218"
     CDS             34502..>34880
                     /gene="rimP"
                     /locus_tag="RJ285_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDV7383037.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTI"
BASE COUNT        12553 a         4548 c         6245 g        11534 t
ORIGIN      
        1 gtgttttata ttaaaaattt caaacactcc ctattttttc aaaaaataac tagtttatat
       61 gaaattttgg ctaaaattat aaaaattttt caaggaataa gcatgaaaag aatagttgtt
      121 aaagtgggtt ctcatgtgat tagcgaagaa aacactttaa gttttgagcg tcttaaaaat
      181 ttagtcgcat ttttagctaa actcatggaa aaatatgaag tgattttagt aacttcagcg
      241 gctatttcag caggacacac caaactagat atcgatagaa aaaatctcat caataaacaa
      301 gttttagccg ctattggaca acctttttta atcagtgttt ataacgagct tttagccaaa
      361 tttaataaac taggtggaca aattttactt acaggtaagg attttgactc tagaaaagct
      421 accaaacacg caaaaaatgc tatcgatatg atgataaatt taggaatttt acctattatc
      481 aatgaaaatg acgctacagc tatagaagaa attgtctttg gtgataatga tagcttaagt
      541 gcttatgcta cgcatttttt tgatgcggat ttgcttgtga ttttaagcga tattgatgga
      601 ttttatgata aaaatcctag tgaatttagt gatgcaaagc gtttagaaaa aatcactcat
      661 attaaagaag aatggctaca agcaaccata aaaacaggta gtgagcacgg aacaggtggc
      721 atagtaacca aacttaaggc agctaaattt ttacttgaac acaataaaaa aatgttttta
      781 gcaagtggct ttgatttaag tgtggcaaag acatttttat tagaagataa acaaataggt
      841 ggaactttgt ttgagtgatt aatttattaa attctctttt aaaatcaaat aagctataat
      901 taaaactttt aatttcacac aaagcgaaaa aatgaaaaaa attattttta tgggcactcc
      961 atcttacgca acttgtattt taaaagcact agtagaaaat gaaaatttta aactcgtagc
     1021 actttttact cagcctgata aagccgtagg tagaaagcaa attttaactc caagtgatac
     1081 taaggctttt ttaagtcaaa attatcctag tattcctatt tttactccaa gttctttaaa
     1141 agataaaaat attataagag agattaagga tttaaatcct gattttatcg tggttgctgc
     1201 ctatggaaaa attttaccta aagccatttt ggatttagcg ccttgtgtga atttgcacgc
     1261 ttctttactt ccaaaatacc gtggtgccag tccgatccaa agtgcaattt taaataaaga
     1321 tgaaaaaagt ggagtttgca ccatgctcat ggaagaaggg cttgacacag gtgctatact
     1381 tgaaagctta gaatgtgata taaaagataa aaattcaagt gaagtttttg aacttttagc
     1441 aaatttggcc gctaagctga tcctctctac tcttttaaat tttgataaaa tcacccctaa
     1501 aaaacaagag gaaagtctag caacgctttg tagaaaaatc aaaaaagaag atgggcttat
     1561 aaatttgcaa aatgcaagag aactttatca aaaatatcta gctttcaccc cttggcctgg
     1621 agttttcttg gaaaatggac ttaaattctt agaacttgaa cttgtggatg aattaaaaca
     1681 aaatgctaag atgggtgaaa ttttagaatt agaaaaagaa agttttttgc ttgcttgcaa
     1741 acaaggagtt ttgcgtatta aaaaacttca agaaagtgga aaaaaagctc ttgatggtag
     1801 gacttattta aatggaaaaa ggcttaaaag tgaagatagt ttgtgttgaa agtatagact
     1861 caactcatct ttttttatgc aagcaaatac gcaatggaaa gattgatgaa aattttgcta
     1921 tttatgcttt agaacaaata aatggagttg gaagtaggga aaattcttgg cagagctcta
     1981 aaggaaattt acatctttct ttctgtatta aagaagaaga cttgccaaaa gatttacctt
     2041 tagcttctgt gagtatttat tttgcttatt tacttaaaga agttttacaa gaaaaaggtt
     2101 ctaaaatttg gcttaaatgg cctaacgatt tatatttaga tgataaaaaa gctggagggg
     2161 ttataagtgc taaaatttca aattttatca taggcggtat gggtttaaat ctgaaatttg
     2221 caccccaaaa tacagcttta tgcgatatag aaatttcgct taaagattta gtgagtgagt
     2281 ttttgcaaaa agtagaaaaa aaaattttat ggaagaatat ttttagcaag tatatgttag
     2341 aattcgaaaa atcaagaaaa tttagcgtcc atcatgaagg taaagttttt tcacttgaaa
     2401 attctttttt gtatgaagat ggttcaattt tactaggcga taaaagggtg tatagtttaa
     2461 gatgagcgaa attattacaa tagcaaatca aaaaggtgga gtaggaaaga ctacaacagc
     2521 agtaaattta gccgcttctt tggctgtggc tgaaaaaaaa gtacttttga ttgatgttga
     2581 tccgcaagct aatgcgacta caggacttgg ttttaatcgt aataattatg agtataatat
     2641 ttaccatgtt tttataggaa gaaaaaagct ttcagatatt attttaaaaa cagaattgcc
     2701 acaacttcat ttagctcctt caaatatagg tcttgtaggt atagaacaag agcttgctaa
     2761 aggtgaaaat aatgagaaaa aaatgcttct taaaaatcaa attcaagaag tgattgatga
     2821 gtatgatttt attattattg attctccacc tgctcttgga agtattacta taaatgcttt
     2881 tgcagcaagc gatagtgtaa ttatccctat acagtgtgaa ttttatgcgc ttgagggtgt
     2941 agctatggtt ttaaatacaa ttaaaattat caaaaaaact attaattcta aacttagggt
     3001 tcgtggattt ttaccgacaa tgtatagctc tcaaaataat ctttctaaag atgttgtaga
     3061 tgatttgaaa caaaatttta aaaaacaact ttttactatt aatggaaacg aagatgactt
     3121 tattgtgatc cctcgcaatg taaaacttgc agaaagtcca agttttggaa agcctataat
     3181 tctttatgat attaaatcgc caggttctgt tgcttatcaa aatttggcgt attctatatt
     3241 aggataatta taatgggatt aaataaagat aggggtttaa gtagtttaat cagtgatatg
     3301 gatactgttt atagtaaaga attgggtttt gataaaaatc aaagcactat gatagaaatt
     3361 gatcaaattt cacccaatcc atttcagcca agaaagaatt ttgatcaaga agctttagat
     3421 gagcttgcta attctatcaa agaatttgga cttattcagc ctattattgt atttaaaaaa
     3481 aataataaat ttattttaat tgctggagaa cgtcgcttaa gagcagtgaa agcattagga
     3541 aaaaaagaaa ttctagcttt tattgctgat attgatgaga ataagcttag agaattggct
     3601 cttattgaaa atatacaaag agagaattta aaccctattg agcttgctaa ttcttataag
     3661 gatttaatgc aagttcataa aattactcaa gagaatttag cagaacttat tcataagtct
     3721 cgtactcaaa taacaaatac tttaagactt ctgaatttag atattagaac tcaagagttg
     3781 attgcttctg gaaaaatttc tcagggtcat gctaaagttt tggttggctt aggtcaaaaa
     3841 gatgaaaaaa tgttggttga tagcataata ggtcaaaaac ttaatgttag agatactgaa
     3901 aaaatagtta aaaaaataaa aaataatgaa agcttaccta atcaagaatt tgaagatgaa
     3961 ataaaaaaat taaaacaaat actaaatcgc tttggatttg actgcaaaaa taaaaataat
     4021 gattttgtaa ttcatttaga aaatattgat aaaattaaaa aattaatcaa aatgcttgaa
     4081 aagctttaac caaaatctta gcttttttat ggtaaaatag tccttcgaaa attctaacca
     4141 aggagaatta tgtttgaaga tatgcatcct tccataatgc ttgctactat ggctattttt
     4201 ttagctatga tagttatttt aaatagtatg ctgtataagc cgcttttaaa atttatggat
     4261 gaaagaaatg attctataaa aaatgatgag aataaagtaa aagaaaattc tcaagaagtt
     4321 ttaggtgtga atgatgaatt agaagctatt catattaaca ctagagaaga aattcaaaaa
     4381 attaaacaaa gtgctatagc tgctgctaaa gaagaggcag agcaaattct tagaagcaag
     4441 aaagaagaat tagaaagaaa aatggccagt ttttatgcag atttagccgt tcaaaaaaaa
     4501 gagttgcaag aacatttaaa catacattta cctgagctta agcaagcttt gcaaaataac
     4561 ataaagaaaa tttaagagga gagaaatgag taagttattc tttattatat ttttgctacc
     4621 tttgtatgct tttggtgcat caaatggtag tggagaatat gatattattc caaggactat
     4681 taattttcta atttttgtgg ctatattgta ttattttgtt gcaactccat ttaaaaattt
     4741 ttacaaaaac cgtattgtaa aaatttcttc taaacttgat gaaattcaaa aaaaactttt
     4801 agaaagtaaa gctaagaaat tagacacgat gaaaaaactt gaagaagcta aggcaagtgc
     4861 tgctgccgct ttaattacag caaaaaaaga agctgaaatc ttagttgaaa atattaagaa
     4921 agaaactcaa gatgagttag atttacttca aaaacatttt gaggaacaaa aagattatga
     4981 atttagaaaa atggaaaaag aattagtatc aaatacttta aatgaaattt tttctgatcc
     5041 aaatatgaca ttaaaacaga gtgaaataat agaacttatg atgaagaagg tatcttaaat
     5101 atggaaaata taattgcaag aagatatgca aaagcgatag cttcaagagc tgatataaat
     5161 gatttttatc agaatttgtg tattttaaat tctgcttttg ttttgccaaa atttaaaaat
     5221 attatagaat ctaatgagat taaaaaagaa agaaaaatgg aatttcttga ttcttttttt
     5281 gatattaaaa attctagttt tcaaaatttt ttaagacttt tgattgaaaa ttcaagatta
     5341 gaatgcattc ctcaaatagt taaagaactt gaaagacaaa aagcttttaa agaaaatatt
     5401 tttgttggta ttgtgtattc taaagaaaaa ttaagtcaag aaaatcttaa agatcttgaa
     5461 gtaaaactta acaaaaaatt tgatgcaaat attaaattaa acaataaaat cagtcaagat
     5521 gatagtgtta aaatagaatt agaagaatta ggttatgaac tttctttttc tatgaaagct
     5581 cttcaaaata agttaaacga atatatattg aaaattatct aaggagaaaa agtaaatgaa
     5641 atttaaagct gatgaaatca gttctatcat aaaagaaaga atcgaaaatt ttgatttaaa
     5701 tttagagatt gaagaaacag gaaaaattat ttcagtagct gatggtgtgg ctaaggttta
     5761 tggtcttaaa aatattatgg ccggtgaaat ggtagaattt gacaatggcg ataaaggtat
     5821 ggcattaaac cttgaagaaa gtagcgtggg tatagttata cttggaaaag gagaaggctt
     5881 aaaagaaggt acttctgtaa aacgccttaa aaaacttctt aaagttccag taggggaagc
     5941 tcttatcggt cgtgtggtga atgcacttgg tgaaccaatt gacgctaaag gtgttatcaa
     6001 tagtaatgaa tttagatttg tagaagaaaa agctaaaggt atcatggcta gaaaaagtgt
     6061 acatgaacct ttacatacag ggattaaagc tatagatgca ttggtgccaa ttggtcgtgg
     6121 ccaaagagag ctcatcatag gcgatagaca aacaggtaaa actactgtag ctgtagatac
     6181 tatcatttct caaaaaggac aaggagttgt ttgtatttat gtagccatag gacaaaagca
     6241 aagcacagtg gctcaagttg taaaaagact tgaagagcat ggagctatgg attatactat
     6301 agttgtaaat gcgggtgctt cggatccagc agcacttcaa tacctagcac cttatacagg
     6361 tgtaactatg ggtgagtttt ttagagataa tgcaaaacac gctttaattg tttatgatga
     6421 tttgagtaag catgctgtgg cttatcgtga aatgtctttg attttacgcc gtcctccagg
     6481 tcgcgaggct tatcctggtg atgttttcta tcttcactca agacttttag aaagagctag
     6541 taaattaaat gatgagttag gtgcgggttc tttaacagct ttaccaatca tcgaaactca
     6601 agcgggcgat gtttcagctt atattccaac caatgttatt tcgatcactg atggacaaat
     6661 tttcttagaa actgatttat ttaactcagg aattcgtcca gctatcaatg tgggtctatc
     6721 ggtttctcgt gtgggtggtg cggctcaaat taaagcaact aaacaagttt caggaactct
     6781 aagacttgat cttgcacaat atagagaact ccaagctttt gctcaatttg caagtgattt
     6841 ggatgaggca agtagaaaac aacttgaacg tggacaaaga atggttgaac tcttaaaaca
     6901 accaccttat tctccgctta gcgttgaaaa acaagtagtt ttaatttttg caggaaccaa
     6961 aggtttctta gatgatattg ctgtttctag aattgaggaa tttgaagatg gaatttatcc
     7021 ttttattgag gcaaaacatc cagatatttt tgagcaaatt cgctctaaaa aagctttaga
     7081 ttctgatttg gaagaaaaac tagctaaagc cattaatgag tttaaagcaa atcatttata
     7141 aggtctttta tgtctaattt aaaagaaatt aaaagaaaaa ttaaaagtgt ttataacact
     7201 caaaagacta caaatgctat gaagctagtt tctactgcta agttaaaaaa agcagaagaa
     7261 gcagctaaaa gatcaaaaat ttatgcacaa aaaatcgatg aaattttgag tgaaatttca
     7321 tttcagatca ataaaattgt tcacaatgaa gatgatgtgc gtttatcttt gtttcataaa
     7381 aaagaacaaa ttaaaaccgt agatttaata tttatcactg cagataaagg tttgtgcggt
     7441 ggttttaata ttaagacttt aaaaacagta agtgaaatgc taaaagaata tgaagcaaaa
     7501 aatattaata ttcgtcttag agctataggt aaaactggga ttgaatattt taattttcaa
     7561 aaaatagaat tgttagagaa atatttccat cttagttcta gtcctgacta tgagaaagca
     7621 tgtgaagtaa ttcatgctgc tgtagatgat tttttaaatg gaaatacaga tgaagtgatt
     7681 ttagttcata atggttataa aaatatgatt acccaagaac ttaaaattaa tcatcttatt
     7741 ccagttgaac caaagagtat tgaacagact cataattctc ttttagagct tgaaccagaa
     7801 ggaactgagc ttttagaaga tttaataaaa acatattttg agtataatat gtattatgcg
     7861 ttaattgatt ctttggcggc agagcatagt gcaagaatgc aagctatgga taatgcaact
     7921 aataacgcaa aggcaagagt gaaacaactg aatttagctt ataacaaagc aagacaagaa
     7981 tctattacca ctgagcttat agaaattatc agtggtgttg aatcaatgaa atagtaaatt
     8041 ttaaggagaa gataaataat gcaaggattt atttcacagg tattaggtcc ggttgttgat
     8101 gtagatttta acgactattt acctcaaatt aatgaagcaa ttgttgtaaa ttttgaaagc
     8161 gaaggaaaaa aacataaact tgttttagaa gtagcagctc atttaggaga taatagagtt
     8221 agaactattg ctatggatat gacagatggt ttggtaaggg gcttaaaagc tgaggcttta
     8281 ggtgctccta ttagtgttcc tgttggtgag aaagttttag gaagaatttt caatgttact
     8341 ggagatttga tcgatgaagg tgaagaaatt tcttttgata aaaaatgggc aattcataga
     8401 gatccaccag cttttgaaga tcaaagcaca aaaagtgaga tttttgaaac agggattaaa
     8461 gttgtggatt tacttgctcc ttatgcaaaa ggtggtaaag taggtctttt tggtggtgca
     8521 ggtgttggta aaactgttat tattatggag cttattcaca atgttgcatt taagcatagc
     8581 ggctattctg tatttgcagg tgtgggtgag agaactcgtg aaggaaatga cctttataat
     8641 gaaatgaaag aaagtaatgt tttagacaaa gttgctctat gttatggaca aatgaatgaa
     8701 ccaccaggag caagaaatcg tattgcttta acaggtttaa caatggctga atattttaga
     8761 gatgagatgg gacttgatgt gcttatgttt attgataata tctttagatt ttcacaatca
     8821 ggttctgaaa tgtcagcact tttaggaaga attccatcag ctgtgggtta tcaaccaacc
     8881 ttagcaagtg aaatgggtaa attccaagaa agaattactt caactaaaaa aggctcaatt
     8941 acttcagttc aagctgttta cgttccagct gatgacttaa ccgacccagc tccagcaact
     9001 gtttttgctc acttagatgc tacaacggtt ttaaatagag ctattgctga aaagggtatt
     9061 tatcctgcag ttgacccact tgactcaact tcaagaatgc ttgacccaaa tatcattgga
     9121 gaagaacatt ataaagttgc tcgtggtgtt caatcagtgc ttcaaaaata caaagattta
     9181 caagatatca tcgccatttt aggtatggat gagcttagcg aagaggataa acttgtagtt
     9241 gaaagagcaa gaaagattga aaaattctta tcacaaccat ttttcgttgc agaagttttc
     9301 acaggtagcc caggaaaata tataagcctt gaagatacaa tagcaggatt taagggaatt
     9361 ttagaaggta aatatgatca tttaccagaa aatgctttct atatggttgg aaatatagat
     9421 gaagctattg caaaagcgga taaattaaaa ggttaattta tgaacgattt gattaatttc
     9481 gagatagtta cacctttggg tgtaatctat caaggagaag taaaatctgt tactttaccg
     9541 ggtagtgaag gagaatttgg cgtgcttaaa ggacatgctg ctttggtttc ttctttaaaa
     9601 tctggagtaa ttgatattga aaaagctgat ttaaaccatg aattaattgc tattgatgct
     9661 ggacatgcaa aggtagatga agataagatt tgcgtgttag caaagggtgc ggtttgggtt
     9721 tgtggaagtg atgaaagtga gattgaaaaa aatcttgctc aagcaaaaga tttgattaaa
     9781 tctatgagtt ctgataatgc agctttagca gcaacttttt caaaacttga taatgcaagg
     9841 atgcattaat gaattttgaa gctatatttc attttttcaa tagttcaagt attattactt
     9901 atatagtttt attatggctt tctttatatt ttattttagc atttagtatt ttgtttgcta
     9961 gattgactta tttggctaca tggagaaata aagaaaaaga aagtttagaa actttgctct
    10021 tgggtgagaa ggatttaagt cgtactgatt cgattttaag aaaatgcaat gatacaactt
    10081 caaatcattt agaaatctat aaaaatttag caagtcgccg cgcttctgct ggacttactt
    10141 ggcttagtat tattgcttca acttcacctt ttataggtct ttttgggaca gttatttcta
    10201 tacttgaaac ttttggtggg cttggaactc aaaattcttt aagtattata gctcctaaaa
    10261 tcagtgaggc tttagttgct acaggttgtg gtattttagt agcaattcct gcttatacat
    10321 ttcatctcat cattaaaaga aaagctttcg aacttttaag cattattgat agcgagatta
    10381 aagttataag ttcgagtaaa taaggttaaa aatgccattt gatgatgaaa aacctgagct
    10441 taatatcaca cctttagtag atattatgct tgtattgctt gcgattttaa tggtaacagc
    10501 tccaagcatt acttatgaag aaaaaattaa tcttccacaa ggtagtcaaa aaaatactag
    10561 cgctccaact gttaagagtt taattattag tattaatgca aaaaaagaaa tttttttaaa
    10621 tcaagaaaaa tacgatttta taagttttgc tgacaatctt gctcaaagaa aagcacaatt
    10681 taataccgaa gatccggttt ttatacgcgc tgataaaaac ttaaaatatg acgatgttat
    10741 ttcagtctta agaagtgtaa aaaatttagg atttaataaa gttgctttac agactgaata
    10801 atcatgaaaa attatggttt gagtaattta aattcgtttt tacttgcttt agcaatatat
    10861 attagtatag taattcttgt tttttttaga cttgtaagcg aggttgaacc tgctatacaa
    10921 tatactgata tcaaagatag ttttgtagat attgaacttg ctgaaccatc aaaacaagtt
    10981 attactcaaa gcaacactcc taaagaaata caaaaaccaa cagagcaagt tgatatagaa
    11041 aagctttttg ctcagactac aaataaaaca gttaaaacag aagatattga ccaaaaggcg
    11101 agtaatttta atgagctttt tggaaatatc aaagaaatac aagaagaaaa gactacaaaa
    11161 attcaatcaa gtgctaaatc aggagcttct agtgccccaa aacctcaagc ttctgaactt
    11221 gtaaaacaac ttaatgatag cttgcttcaa gaagaaagtt caacacaagg tgaaagtaca
    11281 aaggcacaaa aaattggaat ttatgatgaa tttttaggga aagtcgtgcg tattatcact
    11341 caaagatgga ctcagtatta tccaaatagt gaaaaaattt ctgttaaggt aaaaattttt
    11401 attgatgaaa atggaaaatt tggctatact tcagttgaaa aaagcgggaa tcctttatat
    11461 gatgctaaag tggctgaatt tttagaaagt caaaaaggta aatttattac ttatcctccg
    11521 caaaataaaa atataagcat taccatgaat ttaagagatg aagcaaaagt taaaaatgat
    11581 taggagaaca aaatgaaaaa aattgtagca atttttttag tctttttagg aagtctttgg
    11641 gcagaagatc cggttattga tgttgttaat tctggtgtgg ttttaccaaa gattatcgtt
    11701 aaagataatt caaatttaag tgatgagaat ttaaagaaaa gcttttataa tatcattgtg
    11761 aacgatttga aagtaagttc aaactttgaa gttgttgcta atgcaactga aacaagtaat
    11821 tatacttttg aatacgcttt aaataaaaat ggtaacactt tgagtttaaa tgtaaaaata
    11881 aaagctggcg gttctgataa gtcagagcaa acttatactt taaatggttt agagcaatat
    11941 ccatttttgg cacataaaag cgtcaaagct tctgtaaatg cgttaggact tgcacctgtt
    12001 gattggatgg atcataaaat tttgatcgcg agaaattcta gctctaaaaa aagtcaaatt
    12061 attatggctg attatacttt aacttatcaa aaagttattg ttgatggtgg gcttaattta
    12121 tttccaaaat ggggaaataa agaacaaact ctattttatt atacagctta tgatcatgat
    12181 aagccaactt tataccgtta tgatttaaat accaataaag ctagtaaaat tttatcaagt
    12241 ggcggtatgg ttgtagcaag tgatgtgaat gtagatggaa gtaaactact tgttaccatg
    12301 gctccaaaag atcagcctga tgtttattta tatgacttaa ataccaaaaa tctaacacaa
    12361 ttaactaatt attctggtat tgatgttaat ggaaatttta ttggctcaga tgatagtaaa
    12421 gtggtatttg taagcgatcg tttaggatat cctaatattt ttatgcaaga tttaaatagc
    12481 aatagtgctg aacaagttgt ttttcatggt agaaacaatt cggctgtttc gacttataaa
    12541 gattttttgg tttattcaag tcgtgaacca aatcaagcag gtgtttttaa tatttatttg
    12601 atgtcaatta atagtgatta tattcgtcaa cttacagcaa atggaaaaaa tttatttcca
    12661 agattttcta gtgatggtgg aagtatagta tttatcaaat atttaggtgc gcaaagtgct
    12721 ttgggtgtta ttcgtgtaaa tgcaaataag actttttatt ttcctcttag ggttggaaaa
    12781 attcaatcaa ttgattggta aaaatttcaa ttttaggtta aaattaatta aaaattagat
    12841 ataataataa gaatttatta actttgaaag gtcataaatg aaaaaaattc tttttatttc
    12901 aattgcagct cttgcagttg ttattagtgg ttgtagcaca aaaagcacta gcgtaagcgg
    12961 tgatagtagt gttgattcaa atcgtggttc aggtggaagt gatggttggg atattgattc
    13021 aaaaatttct caacttaatg atactttaaa taaagtatat tttgattttg ataaattcaa
    13081 cattcgtcct gatatgcaaa atgttgtaag cacaaatgct aatattttta acactgaagt
    13141 aagcggtgta agtattactg ttgaaggaaa ctgcgatgag tggggaactg atgaatataa
    13201 ccaagctcta ggtttaaaaa gagcaaaagc tgtaaaagaa gctttaatcg ctaaaggtgt
    13261 aaatgctgat agaattgctg ttaaaagcta tggagaaaca aatcctgtgt gcactgaaaa
    13321 aactaaagct tgcgatgcgc aaaatagacg tgctgaattt aaattatcaa gataattaat
    13381 gaaaaaaata ttcacagtag ctcttcttgg agctacttta ctttatgcag aaaactcagc
    13441 ttttggtgca ggagatataa caagcaattc ttcttatggt ttaacttcaa atgaaaaatt
    13501 atttaaagaa aagttagata atttaaataa tgaaaatata caaacaaatg ctagaattaa
    13561 tgaaattaac gaaagaatcg agggtttaca aagcacttta gaaggtataa attctcaata
    13621 tgccaaatca aattctagat taagtcaagt tgaagagaat aatcaaaata ttgaaaataa
    13681 ttttactagt gaaattcaaa aattaaaggc ttatgttgaa gaaagtagaa aaattcaaga
    13741 agctaataat aagcaagtaa aaaaagtttt agccgaactt agttctttag tagacgctat
    13801 taatgcaaat tatgtttcta aaaacgaatt aaatgatgca aatttaagcg ttaaaactat
    13861 tacacctagt gttgttgttt caactacaga ttcaaatagt accattgaaa acaataatac
    13921 tcaaaatacc caagatgata aagcaaaaca aattgatgaa tcttggaaaa agaaaaaaaa
    13981 taatgaaatt ttagaattag cgataaaaga tgttgataaa aatgcttttg aagattccaa
    14041 agcaaaatta aattttctca taacaaagca gtataaacct gcaagagcaa atttttggtt
    14101 aggggagatc gagtataaac aaaaaaatta taacaatgct attgtttatt ataaaaaaag
    14161 ttcttctttg agtacaaaag gagattattt cccaaaactt ttatatcata ctgccatttc
    14221 attggataaa acaggtgata caaaaacagc aaatggtttt tataaagctt taaaaactaa
    14281 ttatccaaat tcacccgaag caaaagcttc acctaataga aaataaatta aggagataaa
    14341 atggctatag aaaaaaatag tgtagtttca atgttttatg agttaaaaga tgcaaataca
    14401 aatgaagttt tagaatcaaa tttatattct caacctattt cttttatttt aggcaaaggt
    14461 cagattttag aaagcttaga agaagaagtg atgaagcttg attgccctag caatgctgat
    14521 gtggtaatta aaaaagaaaa aggtttaggc gaatacgatg aaaatgccgt tcaaacttta
    14581 ccaaaagagc aatttgcagg tattgattta aaagtaggta tggagctttt tggcgaaggt
    14641 gaaaatggcg aaaccgttcg tgtaactgta aaagaaattg gtgaaaatga tgtcacaatt
    14701 gattataatc atccttatgc gggtcgtgat ttgctttttt ctttaaatat cgtagatgct
    14761 agagctgcga gtgaagatga aattcttaca ggtattatcg caggaagtca tagttgtggt
    14821 tgtggaagcg gacatggaca cgatcatcat cacggacatg gacatggcgg cggcggttgc
    14881 tgtggtggtg gcggttgtgg ttgtcattaa tgaatgctgc gtttatattt ccaggtcaag
    14941 gctctcaaag tcttggcatg ggaaaagatt tttatgaaaa ctctataaaa gccaaagaac
    15001 tccttcaaaa cgcaagtgat ttttgtaaga ttgattttaa acatttgctt tttgaagaaa
    15061 acgaaaaact caatcaaagt gaatttactc aacccgccat cgttttaaat tccttaatgg
    15121 cttatagtgt tttacttgaa aaaaaacctg atttaagttc gaaatttgct ttagggcact
    15181 ctttgggaga attttcagcc ttagctgtca atggtgcttt tgatttttta gaggctcttt
    15241 ctttggtcaa taaaagaggg cttttcatgc aagaagattg tgcaaaagtt gaagcaggta
    15301 tgatggtggt tttggggctt gatgatgaaa aggttgaaga gctttgtcaa aaagcacaaa
    15361 aagaaaacaa gcaaattttc gctgcaaatt ataactgcga tggacaaatc gttgtagcag
    15421 gtttaaaacc tgatttagca agttatgaaa gtgtatttaa agaagcagga gctaaaagag
    15481 ctatgctttt aaatatgagc gtggcaagtc attgtcctct tttggaaaat gcttcagcta
    15541 agctttgtgt ggagcttgaa aaggtgttaa aaccaaattt taaagccgta gtttctaatg
    15601 caaatgccaa aatttataca agcaaagaag aagcccttga gcttttaaaa gcacaactta
    15661 tctctcctgt gctttataaa caaagcatta aggcatgtga aaatgaagta gattatttca
    15721 tagaatttgg cgcaagtgtg cttaagggtt tgaataaaaa aatcacttca aaagaaactt
    15781 atgctttaac aaatatgaat gatattgatg aatttttaaa ggttgtatga tgaaaatagc
    15841 aattttagga gccatgagtg aagaaatcac tcctttactt gaaacactta aagattatac
    15901 gaaaatagaa cacgctaaca atacttatta ttttgcaaag tataaaaacc atgaacttgt
    15961 tttagcgtat tctaaaattg gcaaggtaaa ttctactctt agtgctagtg tgatgataga
    16021 aaaatttggc gcacaagctt tgctttttac aggagttgca ggtgctttta atcctgaact
    16081 tgaaattggc gatttgcttt atgcaacaaa attagctcaa tacgatcttg atattactgc
    16141 ttttgggcat cctttaggtt ttgttccagg taatgaaatt tttatcaaaa ccgatgagaa
    16201 attaaacaat cttgctttag aagttgctaa ggaattaaat atcaaactgc gtgcaggcat
    16261 tattgcaacg ggtgatgagt ttatttgcga tgaagcaaaa aaagcaaaaa ttagagaaat
    16321 tttcaatgcg gatgcttgtg aaatggaagg cgcaagcgtg gctttggttt gtgatgcttt
    16381 aaaggtgcct tgttttatct taagagctat gagtgataaa gcaggggaaa aggctgaatt
    16441 tgattttgat gagtttgtga tcaattcagc taaaatttca gccaattttg tgcttaaaat
    16501 gtgcgagaaa ttatgataaa tcttagcaaa aaactcatac gccaagttgc acaagctaat
    16561 gctaaatttg gacttattaa agatggagat agggttcttt tagggcttag tggcgggaaa
    16621 gattctttgg ctttagccca tcttttaaat cgtatgcaag ctcacgctcc ttttaaattt
    16681 gaacttgaag cggtaacttt gagttatggt atgggcgagg attattctca tcttcatgca
    16741 cattgtgaag aacacggcat taaacatagc gtgcttgatt caaatattta tgaagtttca
    16801 ggcgatacca taagagaaaa ttcaagtttt tgtagttatt tttcgagaat gcgtcgtgga
    16861 gctttatata cttacgctct tgaaaaaggt tttaacaagc ttgctatagc tcatcattta
    16921 gatgatgcag cagaaagctt ttttatgaat tttattcata atggagcttt aagaacctta
    16981 gcgcctattt atcaaagcaa acgcggtata actgtgatac gccctttgat ttttgtgcgt
    17041 gaaagacagc ttagagataa tgctacgcaa aatgaactta gcgtgatagg aaatgaattt
    17101 tgtcctggta tgaaactcag tgaaaaaaat gtaaaatttc cacacgctag agaagaagct
    17161 aaacagcttt tagcaaattt agaaaaagat catcctaagc tttttacaag tttaaaaacc
    17221 gcttttgcca atttacacac ggagagtttt tggcttcaaa aggcataaaa gcatgaaaaa
    17281 agcttttgtt ttagtggatt atcaaaatga ttttattgat ggaagtttag gttttgataa
    17341 ggctttaaaa atcaaagaaa atattcttaa agccttaaat caaatcgatt ttaataacac
    17401 gcatttgctt ttaacctatg atacgcatga tgagcattat ctacaaagta aagaaggttt
    17461 aaatttacct gtaaaacatt gcattaaaga gagtttgggt tggcaaatgc caaaggaatt
    17521 tgaacctttt ttacaaaaag ctcataaaat tttttataaa aatacttttg gtagcttaga
    17581 attagctaat ttcatacaaa aaagtgatta tgaagaactt cattttgcag ggcttgtttc
    17641 tcatatttgt gtgttttgta atatcatttt agcttttggt gctaagccta atgcaaggat
    17701 aattttacac caaaatttaa gtgcaagttt tgatgaaaat ttagaaaaat ccgcttttga
    17761 tatacttagg gcttatggta ttgaaattgt ttaatgcaag gttttatact tcatactcaa
    17821 aaagttaaag atgaggattt gatcgtttat attttaagtc ctaaaatgct tatcaaggct
    17881 tatcgttttt atggacttag acattctagt attttaagcg gctataaaat cgactttgct
    17941 ttagatgaaa atcccagctt tttgccaaga cttaaagatg ttttgcattt gggttttgta
    18001 tggattatgg atcgtgaaaa aatgctgatt tggcaagagt ttatccgtct tttatatagg
    18061 catttaaaag atgtggaaga gcttgatggt ttttattttg atttacttga tgagtgtgtg
    18121 aaaaggtttg aaaaacaaaa ttcaaagcgt gttattgttg atgcttattt aaaaattttg
    18181 gaatttgaag gaagattgca taaggatttt ttttgttttg cctgtgatga gaaaatccaa
    18241 aattccatta cactgctaag ggctttttta ccttcgcatc ctcaatgtgc tttaggattc
    18301 gagtttgaag agaaaaaact aaaacaattt tatagcagta aaaattgtgc gatttttgat
    18361 gatgaagaaa tagaaaattt atatcatttg attaaggaag gtttatgata ttaagtgatg
    18421 aaaaatgtga ttttttagaa tctatagcaa gttttttaag tcctaaagat gtggagcttg
    18481 tctttgtgga tagtaaagaa atgcaagaaa ttaacttaga gcaaagaaaa caagataaaa
    18541 ctactgatgt actttctttt ccgcttgaaa atatcgatga gagtttgcct ttgggttctg
    18601 ttgtgatcaa tgtggatttg gcaaaagaaa aggctaaaga gttagggcat agctatgaag
    18661 aagaaataag cttgcttttt atccatgcta tacttcattt gttaggcttt gatcatgaaa
    18721 atgataatgg agaaatgaga gaaaaagaga aagaacttat agatcatttt aatttgccta
    18781 aaagtttgat tgtaaggact ttagaagatt aagtaagaat tttttcttcg agtgttagaa
    18841 ggttttatat tatatatttt aattatgagt agatatttta agaaaaaatt atttttaccg
    18901 atttatctta taattttatt tacaaggaag gcaaaaatga ttaatggtat aaattcttat
    18961 tcaaactaca attacacaag cactttttaa taatacctca aatacaaaat catctaatgc
    19021 tataaatgaa gcttcaaacc ttgtaagtga taaatcacaa gcggtagata aaattttagg
    19081 ctatgccgta gataaagagg gcttttttta caagtgattt caacgaagca gcaggcttgc
    19141 caaaagatta taagatttat gctaaaggtg ctgaaaattt agctagttat ataactaacc
    19201 ttaattttaa atcttttacc aatatagata ttgccaaaag tttaggtaat gcttacaagg
    19261 tattttcaca gcttgttgat gaaccgagtg gaaattttac tactgaagat ttaagcaaaa
    19321 tccctttagg gttttcttat gacaaaaaag ttttcaagta actaatatct atcaaactca
    19381 aaaagagttt gatagtgctt taagtgcaaa taatgatttg caaatctatc aaagttctaa
    19441 acagttggca ttaagttttc caatttggaa cgaaaattct cctaacgatt atactaaaaa
    19501 gaatagcgat atatttgctc caagttccca tatagatatt ggagcatcat tttataaaaa
    19561 tgatagtggc actataagta aaggcggtgt tttaatggca ttttttgtag gtatgtcagg
    19621 acaaaatcct cttatagaag gtgaaacaac catatcagga aaacttaatg gctatgataa
    19681 aaatatgagt caaaatcaag tggaagattt gaatgaattt ataaaacaaa atcctattaa
    19741 atacggcata acaggagata taggaacaga ttttacaaat attttaaaac ttaaaaacaa
    19801 tattagcgat atagaagaat ttaaaaaaca atggctagaa atgaaagcca aaagcgataa
    19861 aatgggagaa gtatatcaag ccgagatagc aaacaaaaaa gaagttgttt catcgcaaga
    19921 aactttagag gaaggcaaag aaaagccttt taaacctata caagcagaaa gtaaaagcga
    19981 aacttacaaa gatgataata aaatgaatga gcttgtaaaa aagcttttag aaactaaatt
    20041 tggcacaagc gatgagttag aacttctttt tggtatgaaa tttagtgatg ataacacagg
    20101 agaatttaat aaaattcttt ctttaaattc tacaccaaaa ggtatagata ttaaggctta
    20161 aggtttttta attataaaaa tcgatcaagc taaactaaaa aattcttcta ttttttttcg
    20221 cattttttct gtattgtcga tacgattgac ttcatctcta aaggctgaag cgtctttgtg
    20281 tcctttagaa tactcgtgta aatgcttgcg aaatatactt acgccttgat ctttgtagtg
    20341 ttttatcatt tcatcaaaat gagtgagtat gatttctttt ttgagttttt catctacact
    20401 tttaccgctt ttgatttcat aaaatatcca aggatttcct acgctcgcac gccctatcat
    20461 gagtccatca cattttgtga ttttataaac ttctttagcg ttttgtgtgt taatatcgcc
    20521 atttgcaatc acaggaattt tcacgctcgc tttagcattg gcaatggatt cataatcggt
    20581 ttttccgcta taaagctgtt ttcttgtgcg tccatgaata cttacaaaat ccacccccaa
    20641 gctttcgcaa attttagcca ttttttcagg atatttttca ttaaatccta gtcgaaattt
    20701 cacacttgta aggctttttt tattgttttc tttaatcact cctacaagat ttttaaaaag
    20761 ctctaaattt tctagcaaag cactgccagc acattgttta acaactttat ttacagggca
    20821 accgcaatta aaatcgatcc catctacaaa atccatttca tttagcattt gcactgcttt
    20881 ttttagcact tctttatctc cacctgcaat ttggactata tagggatttt ctaattcagc
    20941 tctttctagc atatgtaaag ttttagaact ttcataaact aaggcattag aacttatcat
    21001 ttcacttatg gtaatatcag caccaaattt ttttactaca ttacgaaaag gcggatctga
    21061 aaaacctgcc ataggggcta aaaacagggg ttttttgcta aaatctatca ttgtatgagt
    21121 tgatttagat cgattttgat atttttttca cgcaaggcta aaaaggcttt aaaatcatta
    21181 aattttttat catcattgtg aatttgttct cttaactcat ctaaaagtcc aaattcagcc
    21241 aaaagatata aatatgctct taaagcttcg cttttttcat ttttaatttt gttaaaaatt
    21301 cctaaaatag catcaggatt taaaagttta gtacttagtt ttgctgcgtt aagatagtct
    21361 ttttcgctta atatgttgtg tgaaagtaaa acttcatatt ctgctacact aagttctaaa
    21421 tttccttctt tgaaacgctt gataagtgtg agaacttcag aaggcttttt agggattttt
    21481 acatttttaa tttgctcata actagctttt tctataagag tgttaaaagc aatttcttca
    21541 aattcatctt tgatttcatt aaggttttta agtttgttat aggcataatt tgcatcattt
    21601 ttgagatgat ttttttcatt ttgcaaatat aaaacattgt tattttcgag tttaaatttg
    21661 ctaaggttaa aaaattcgtt tttatttaaa ccatcaataa gatctaaaat ttcattgatt
    21721 ttatttgagt gtggaatttt ttcatgtgtt tttatggttt taaaaagttg tgctacagat
    21781 ctaaattctt ttgtttgaaa agtggtttta agatcttttt caaggagtaa atcttgagta
    21841 taagcttcaa atttagctgc atctttaaaa aaatgcttaa attttaaata acgcaaaaat
    21901 ccataaaatg ctatgtgtaa aacggctaaa atcatataaa taaataaagg aataacaagc
    21961 catatcataa taggtagttc aaaggtataa gtgctgatat ttagagtata gcttcctagt
    22021 tctagatgcc aagcaaaggc aaaaataagt gctatataaa taaaacttgc aagtaagaag
    22081 agtttaattt tcatgttttt ttccttgttc tgcaatttga cagcaagtga tacaatatct
    22141 tgcgtgaggt ttgactttta gtctttgaga gtcgatttca tcatcgcaag attcgcaaat
    22201 tccataagtg ccgtttttga ttttatctaa agaatcttcg atttctataa gttcttcttt
    22261 gagattggtg ctgatagcaa agtcaatttg agagcctgtt tctatgacag aaaaatctac
    22321 actatcgctt gggacgctat tgtgaagagc ttcgatttca tttgaattgc tttgcaaatt
    22381 ttctaagatg gctttttttc tttcttctaa aatatttttg aaattttgta tttcattttt
    22441 tttcatttta aaactttcta tttgtgataa gggtgattgt tgttgatgca aaatgcacga
    22501 taaatttgtt ctaaaagtaa ggttttaaca aattgatgtg ctaaagtaag tttgcttaat
    22561 gatagtctaa aatccaaact ttgattaaat tcttctctta aaccataagc accgcctata
    22621 aaaaaactta attcattttt atcttggatg agttttgcaa attctatact tgtaagatct
    22681 ttcccttttt catcaagagc gatacaatag ccttttttat aaggcataaa agcttcttca
    22741 tagctttttt ttgcttctat ggcatttaaa ttttgagcta aggctatttt tttattaaaa
    22801 acatttattt cttttaaagt ggcgtatttg gagatgagtt tagagtattt ctcactacaa
    22861 gttttaaatt catcattttt ttgaatacaa aagatattaa cttgcaaatt attttccact
    22921 aaaaaatttt agtacatcgc taagatattg tttttgctct cctctttcaa ctatggcatc
    22981 tataagtcca tgttctaaca agaactctgc tttttgaaaa ccttcaggca aatctgctcc
    23041 tatagtttgt ttgataactc ttgcaccagc aaaacctacc aaagcttcag gttcagcgat
    23101 gattaaatct ccaagccaag caaaagaagc acttacccca cccatagtag gatcagttaa
    23161 aatgctaata taaggaagtt tttctttgct aagaagttta agtgcggcac tagttttgct
    23221 catttgcatc aaagaataag tgctttcttg cattctagct ccaccacttg cacttacgat
    23281 gacaagaggg gttttacttg tgatggctct ttgtatagct ctaacgattt tttctccttc
    23341 aacagaacct aaagatccgc ccataaaaga aaaatcaaat acaacaagtt gggtttttaa
    23401 accattgatt tcacattctc cactgatgac agaacttttt ctacctgttt tactttcacc
    23461 ttcgctaagg cgttttttat aggatttgct atcaacaaat tttaaaggat ctatagcttc
    23521 taaatttgca tcatactcaa taaaactgcc ttcatcgctt aaaagtttaa tacgttcatc
    23581 agctgaaatt ctcatgtgat aattgcattt aggacaaaca ttaaaacaag attctatttc
    23641 tttataatac atcaaagcat gacaactttg gcattttacc cagtgatttg gagcttcttt
    23701 aatactaggt tgttgtcttc ttatttttga aaaaatatct gcaaaattca tatattcacc
    23761 taattatttt ttaaaaattc taagattata tcaaaaattt ttttgtcttg gcttaggaga
    23821 aggaaatttt catttttttc tatatataaa ttttgatgaa ttgctaaagc agctgctgta
    23881 tcaaaaattc gtgtttttcc aagaattaat acaaaactaa aatacgaagc ataagcaaga
    23941 cttaaggctg ttgcacccaa agagcgaaat tttaattgat tttttgttaa aaaatcgaga
    24001 agttctggat aaaatgaaat tttttcaact atacctattt taggaaatag attaggtgtt
    24061 aagggtgagt attttggatc ggaaagatta gatttaaaag cttgattgtt cttaaaagca
    24121 aaaatttctt gactgacaag attgcaaaca aaagcacttt ttgcctgatc tttttccata
    24181 agagctatag aagtcccata aaatggtatt ttagaaacaa aatttgaact tccatccaaa
    24241 ggatcaagaa tcatttgttt tgggctagct tttccgatca atccgctttc ttcagaaaaa
    24301 atttgtccaa aacaactaag atattttatg aaaatttgtt cacattttaa gtcaagctca
    24361 tagccttgat ttttatcata gcctaattta gagcaaagtt taagatcatt ttgtgggata
    24421 ttgtttagat acttgcgtat ttgcaaattt gcattcaagc aagcatctaa aaattctttc
    24481 attaaaagcg tgttccaaga ttaaattcaa aactattagt atcatcacct tttttatcat
    24541 taagaggttt ggcaaataca agttgtaaag gtccaatagg tgtaatccat tcaatgccta
    24601 tacctgtact cattcttttt atttcatcta aatttttacg ccctatcata ccataatcaa
    24661 aaaacacgct accacgaagt ttgattctat caatcaaagg aaaactaagt tctacggaat
    24721 tggcaaaagc tatggttccg cctatttcat ctccccattg atttttagga cttactgttc
    24781 tgctttcaaa accgcgtatc gatctaatac cacctaaata aattctttgg ttaattggta
    24841 aataaccttc atcccatact ttataaaaac tcgctttata gcgataaata agatcatatc
    24901 ctatatagtc ttgcaaacct tgataaaagt taaatttaga gcttgatgaa ataaattctt
    24961 gatctccgcc aagtccagcg tattctaaac tagttgaagc aataatacct gatcgtggca
    25021 gataataatc atctgtattg ttaaaggtga ttgctggagt tatagagctt ttaatacttt
    25081 tgccaagttc atatcctgtt cttaaaagag ttggacttaa gtgatatata tcgctttgtt
    25141 caagattata agttaagctt acattatagt atcttgcaaa ttggcgtcca actgttatat
    25201 caaagccgta atttttttct gaataattat cccattcata gtcatttgaa taaagtgttc
    25261 cacccagact atattgacta tcaagaacgc gtggatttac gagactaatc cttcccgata
    25321 aagtatcatc gcttttatct acgcttacag agctttttat tcctgaacca aagatatttg
    25381 tatccgataa agaagcgtta agcaaaatac catcgcttga tccatagcca atgcctccag
    25441 aaatagctcc tgtagaagct tctttaacat caacaatcaa atcaatatgt gtatcatcaa
    25501 ctttttcttc tttgatattt acatcgtcaa aataagaagt tctttttaaa gcattttttg
    25561 actcgcttaa gtctgttcta ttgtataaat taccttctgt tatatataat tctcggcgta
    25621 tgacgcgatc tacggtgcgt gaatttcctg aaataataac atttcttata taaactttat
    25681 cgtgagggat tactttaaat acaacggtgg cttcttgagt ttgatcattt ttttgaatat
    25741 caggatagac ttctacaaac gcataaccca aatcagcact ttgtgtttct atggttttaa
    25801 catcttttct aatgtcttcg atattgatag ttttgccagc gcttgatctt aaatctttta
    25861 cggtttgtgc attttgctta tcatcaaata aaggattttc tatgcttata cttttaattt
    25921 tataaggctt tccttctttg ataaaataag tcaaatttgc ttgataagta tctgtgtagg
    25981 ttttaagata aggggaggat acttgaacat ctaaatatcc ttttttcata tattcatcag
    26041 caattcttga actatcgtta ctaagttcaa aaacttttaa ttttccatca ttgcgtcccc
    26101 acatccatcc cataaattct ttttctttgt taacaacagc aggttctata tcagaatatg
    26161 aaaatttctt tgctccactt aaatgaacat tatcaataat gatattttca ccacgattta
    26221 ctataaattc aagctctagt ccatcagtat tttctaaagt cttttttttg tattctacaa
    26281 tagtatcaaa ataacttttt gcttcataat aagctttaat gcgttcaata gcttctttta
    26341 tacttccttc atcaagtagt gtacctcttt taatccctaa aatactttca acttgttttc
    26401 tatcatttga agctatacct gtgatagtaa cctttgctat agttggtttt tcagtaacta
    26461 taatttccaa aattccattg ttgttttcta ctgcaatatt ttcgaaataa ttttgtttat
    26521 aaagattaag aatagcagtg ttgatttttg caggatttat ttcctcgcct attttaagcc
    26581 ccgtgatatt tatagcgctt gtgttcgata aatgatttaa tccgataaat ttaatatctt
    26641 taatggttgc tgcattggcc atagcaacta aagcacaaat actaataaga tgttttttca
    26701 ttgatttttt acctaaagct ttattaaaag ctgtataata gcaaaaaaaa tttaacaaaa
    26761 aaactaaggt agaaagtatg aaaatagcaa ttatagggct tgggcttatg ggtggatctt
    26821 tagggctttg tttgaaagaa aataagctta tttcttgtgt ttatggtatg gatttaagca
    26881 aagaaaatga aaaagatgcc ctgcaattag gtcttattca tgagcttata gaatttaaag
    26941 atttagcttt atgtgatatg atttttgtcg caactcctgt tgatgctatt atagaaattt
    27001 tgcaaaagtt agttgatttg ccttctaatg taacaattat agagcttgga agtacaaaaa
    27061 gaaaaattat agaaagtttg cctaagaatt taatcaaaca aactcttttt gctcatccta
    27121 tgacaggaac tgaaaattca ggtccaaaag cagcttttaa agagctttat aaagatgcag
    27181 tttgtgttct ttgtgatagt gaaatagctg atgatttaca tcaaaaaaga gcggtagaaa
    27241 ttttttctca tttagggatg aaaattgttt ttatggatag taaagcccat gatcatcatg
    27301 ctgctattat ttctcatttg cctcatgtta taagtttttc tttggcaaat tttgtaatga
    27361 aggaagaaga taaaagaaat attgttcatt tagccggagg atcttttaaa ggtatgagca
    27421 gaattgccaa atcatcgcca caaatgtggg aaagtatttt tttacaaaat aaagataact
    27481 tattaagttc tattgatttt tttcaacaag aattagagag atgtaaacaa atgatacaat
    27541 tagacaaaaa cgatgaatta agagaatgga tgaaacaggc taatacccta agagaaattt
    27601 tataaatttg ctagatattt actgaaaata taatagaatt tatattaaaa gcaacaaaaa
    27661 cattgaaaat ttttaaggaa ggttatggca aaaagaaaag gcaaaactta tttatctgtt
    27721 ttaattttag ttttaatagc aattttgatt ttttttattt caagattaag tatttttgaa
    27781 aaaaatcctc ctcaaatttt aatgccagat gttgtatata ctgatcttaa aaaacctatt
    27841 ttagtgcata ttaaagatga tgaaagttct atcaaaaacg tacaaattat attgcataaa
    27901 gacgacaata ctagtgcaat ggttatagca gatgaaaaga tttctaattt aaaagatatt
    27961 accttacaag ttgctttgcc aaaatttggt tacaaagaaa atgtaaaatc ttttgttttg
    28021 gaggtgatag ctaaagattc tagtttttgg aattttttta gtggcaatga agcaagaaaa
    28081 caaattgcgg tattagtaga taatacggct ccaaaaatca atatcataag caattcttac
    28141 caaatcgagc aaggtggtgc tggggcagtt gtttttaagg ctgatgatgc taatttagat
    28201 aaggtgtata tagaaacaaa taaaggtaaa atctttaaag ccacacctta tgtaaaagaa
    28261 ggatattatg cggctttgat tgcttgggat gcaagagatg aggaatttcg tgcatttgtt
    28321 atcgctacgg ataaagcggg caatatttca aaagaacgta taaggtatta ttttgttaat
    28381 cgtaaatatc gtgtttcaaa tatcaatctg acggataaat ttttagatgg aaagattgag
    28441 aatttagcaa atcagtacgc tccaaaagat aataatctca atcgttatga aaaatttaag
    28501 tttgtcaatg aaactttaag aaatagcaat gaaaaactta tccatgaaat cacttcaaaa
    28561 gtacctgagg aaaaaattga taattttgat ttgaatttat ttttacctct taaaaatggt
    28621 atgaaagtag cggattttgc tgatcatagg tattattctt ataatgggca atttgtgagt
    28681 gattcttatc atatggggct tgatctagca agcgtagcac aagctcctat cataagtaat
    28741 aacgcaggca aggttgtttt tgctgctgaa aatggaattt atggtttaaa tttaattgtt
    28801 tatcatggtt ttggagtata tagtctttat gggcactgtt cttctaaaaa tgttgattta
    28861 gatgaaatga ttaataaaca aagcattata ggcaaaacag gaacaagtgg tttagcctta
    28921 ggcgatcatt tgcattttgg agttttggtt caaggggttg aaacgcgtcc tgaacaatgg
    28981 caagataaaa aatggataga aaataatatt tacaatgttt taaatgatgg taaaaagata
    29041 attttaggaa aaaattaatg aaacaattaa ctttagcaaa aactgtcaaa ggcgtaggta
    29101 taggacttca taagggtgaa cccatagaaa ttactttaga gcctttagaa gcaaatagtg
    29161 gtatagtatt ttttagaagt gatcttaatg caagctataa ggcaagtcct gaaaatgtga
    29221 tcaatactca aatggcaact gttttaggag atgaaagagg gtttatttct acaatagagc
    29281 atttaatgag tgcgattaat gcttatggaa tcgataatgt acgcatagtt ttaaatgcaa
    29341 atgaagctcc tgttatggat ggatcaagta ttagcttttg tatgatgctt gatgaagcag
    29401 gggtaaaaga acttgatgca cctaaaaaaa ttatggtaat taaaaagcct atagaagtaa
    29461 gagatggtaa taaatttgtg cgtttaactc ctactaaaga accccgtatt aactatacga
    29521 ttaaatttga caatgctgtt ataggtgaac aaagttacaa ttttgaattc agcaaaaaaa
    29581 attatataga aaacatagca agggctagga cttttggttt tttaaaagat gttcaagctc
    29641 ttaggagtat gaatttagca ctaggtggaa gtttagaaaa tactatagtg gtagatgaaa
    29701 atcgtatttt aaatcctgaa ggtttgcgtt tcaaagatga gtttgtaaga cataaaattt
    29761 tagatgcaat tggagattta accttacttg gatatcgtgt ttttggggat tatacttcat
    29821 atgctgggag tcatcattta aatcatttac ttactaaaga agttttaaaa gataaagatg
    29881 cttatgaaat tgtaagcctt gaaaaaacaa cccaaaaagc ttatgaaaag gtatttgcat
    29941 aaaaacttct cttttactta atactttatc taagccttta atgatcggaa tttatcaaga
    30001 tgataaactt ataaaaactt ataaaagtga agaaaaagca agcgaatttt taccaaaaat
    30061 tttagatgaa ttgcttaaag aatatgattt tacaagttta atctatgcta atggtccagg
    30121 ttcttatatg gggattaaaa tttcttatgt aagtttgagt actttaagta tagtaaaaaa
    30181 tattccttta tttgcggtga gtgcttttga attaaatggc tataaaccca taagtgcaaa
    30241 taaaaatttt tgttttgtat ataaggaagg tgaaatttgt ttagagcaaa atatcccagt
    30301 agagtttttt ttaccaaaaa atttacaaga gcttaaacta aataatgata atcttccctt
    30361 ttatttttta gatgcaattt aggatgaaat ttgaaaattt tagttccagc tacgagtgcg
    30421 aatttagggc caggttttga ttgtttagga cttagtttaa agctttttaa tgaaactcaa
    30481 atccaaaaat caggtgtttt tagcattagt attggaggcg agggaagtga taatattttt
    30541 cttaaaaaaa acaatatatt tgtaaatatt ttttatgaaa tttatgaaaa actaagcgga
    30601 aaaaaagata attttcgttt tatttttcaa aataacattc ctctttcaag aggattagga
    30661 agctcttcag ctgtgattgt tggagctatt gccagtgctt attatatgag tggatttaag
    30721 gtagaaaaag aatgtatttt agatgaagct ttaatttatg aaaaccatcc agataatatc
    30781 gctccagcta ctcttggtgg ttttgtgtgt tctttggttg aaaaaaataa agtttatagt
    30841 atcaaaaaag agattgataa agatttagct gctgtggttg tgatcccaaa tttggcaatg
    30901 agcacggaac aatcacgcca agctttggcc aaaaatttaa gttttaatga tgcggttttc
    30961 aacctttctc atgcttcatt tttaaccgct tgttttttgg agaaaaaata tgaattttta
    31021 aaatttgcaa gtcaagataa gctccatgaa atcaatcgta tgaaaaactt acccgagctt
    31081 tttgaagtgc aaaaatttgc cttagaaaat aaagctttaa tgagcacact ttcaggttcg
    31141 ggatcgagct ttttttcttt agcttttaaa gatgacgctt tagctttggc aaagaaaata
    31201 caaacaaaat ttaaagattt tcgtgtgcaa tatttagaat ttgatgataa tggctttgaa
    31261 atttgctaaa aaatataaaa aaaagatata attttgaaaa aacatatacc aattagaatg
    31321 tgcatagtgt gtaaaaaccg ctttgagcaa aatatgttat ttagatttaa agttgtttta
    31381 ggagatattg tgcctaaagc agaacatgga agaagcggat atttatgtca aaattgtatt
    31441 gagagagaag ataaagtctt acaaaaagca ttttctaaaa tatgtaaaaa tttaaatact
    31501 aaaattactc agcaaggact taaggagata tttttaaatg gcaaagatta gaattcatga
    31561 aatcgcaaaa gaattaggtt atgatagtaa ggaaattatt gaaaaggcaa atgaattagg
    31621 acttggaatt aaaacagcat caaatgctgt agaacctgag attgcggcag ctatttatga
    31681 gtatatacaa acaagagaaa ttccagaagc ttttaagaaa aatatcaaaa ctcctacagc
    31741 aaaaaagcct aaaaaagaaa atataaaaga acaagaaaag ctaaatgaat ctgaaaaaaa
    31801 agaacctaaa aaagaagaaa agcttaaaca agaagttaaa aaagaagaat taaaaattga
    31861 aaaagaaaat gcaaaagagg aagaaaaaca agaaattatt gatgctcata agccacaaag
    31921 ccttgctagt gcaactttag ccaaaagacg cggacttgtt attgttaaaa agaaaaaaga
    31981 cgaagaagaa attcaagtta aaaaagaaga agtaaaaaat tcaaatgata tatctatcaa
    32041 taatgaagag cgcttaagtt taaaaactat gttttcaaat gctgatgaga gtttaaagaa
    32101 aaagaaaaaa gaaaaaaaat cttttgttgc gagtaaaaaa gaaagtaccg aaaaaatgaa
    32161 ttttttagat gaacatgatt ttggtgatat ttctttagat gatgaagatg aggtagtatt
    32221 acctgatttt agtgtaaaag aacaagaaaa accacaaaat atcaataaaa aacaacctaa
    32281 ttttataaga caagctgttg gaaattctgc gggttttggg tttgaaggtg gaattcaaag
    32341 aagaagtcgt aaaaaaccat ctaaaaagat tgaaaaaaag gaagtagaag aagtaggtag
    32401 cgttgctatt tctaaagaaa ttcgtgtgta tgaattcgct gataagatag gaaaaagcac
    32461 tagtgaagtg atttcaaaac ttttcatgct tggaatgatg acaacaaaaa atgatttctt
    32521 agatgaagat gcgattgaaa ttttggctgc tgaatttggt atagagatca atatcattaa
    32581 cgaggctgat gagtttgatt atgtaaaaga ctatgaagaa gagactgatg aaaaagattt
    32641 agtgactaga gcacctgtga ttaccatcat ggggcatgtt gatcatggta aaacttcttt
    32701 gttagattat attagaaaat cacgcgttgc aagtggtgaa gcagggggta ttactcagca
    32761 cgtgggtgct tatatggtag aaaaaaatgg gcgtaaaatt acttttatcg atactccagg
    32821 tcacgaagct tttactgcta tgcgtgcaag gggtgcaagt atcactgata ttgtaatcat
    32881 cgttgtagcc gcagatgatg gggtaaaacc acaaaccaaa gaagcgataa atcatgctaa
    32941 agcagcaggt gtgcctatta ttattgctat taataaaatg gataaagaag cagcaaatcc
    33001 cgatatggta aaaactcaac tcgcagaaat ggaaatcatg ccagtagaat ggggcggatc
    33061 ttatgaattt gtaggagttt cggctaaaac aggaatgggg attgaagatt tgcttgaaat
    33121 cgtgctttta caagctgata ttttagaact taaagccaat ccaaaaagtt ttgctaaagc
    33181 aagcattata gaaagttctg tgcaaaaagg gcgtggtgcg gtggctacta tcatcgtgca
    33241 aaatggaaca cttactgtag gaagtaccgt ggttgcaggc gaggcttatg gaaaagtgcg
    33301 tgcgatgagc gatgatcaag gtaaagcctt aaaagaaatt aaaccaggcg aatgtggggt
    33361 tatcgtaggg cttagtgaag tagcagatgc aggtgaaatt ttaatcgcag taaaaaccga
    33421 taaagaagca agagaatatg ctaataaacg ccacgaatac aaccgccaaa aagaacttag
    33481 caaatccact aaagttagca ttgatgagct tggagctaag atcaaagaag gcaatctaaa
    33541 agccttgcct gttattttaa aagctgatgt gcaaggatct ttagaagcct taaaagcaag
    33601 tttagaaaaa cttagaaatg atgagattaa agtgaatatc attcatagcg gggtaggagg
    33661 gatcacacaa agtgatatag agcttgcaag tgcgagtgaa aactctatag tactaggttt
    33721 taacatacgc ccaacagggg aagttaaaga gcgtgctaag gataaaggcg tagaaattaa
    33781 aacctataat gtgatttata atcttttaga tgatgtaaaa gccttgcttg gtggtatgat
    33841 gagtccgatt atttctgaag agcaattagg acaagcagag attagacaag tgatcaatgt
    33901 gccaaaaatc ggacaaatcg caggttgtat agtaactgaa ggggtgatta accgtggagc
    33961 taaaattcgc cttatccgtg atggagttgt ggtttatgaa ggaaatgtaa gctcgcttaa
    34021 acgttttaaa gatgatgcta aagaagtggc aaaaggctat gagtgtggcg taggtataga
    34081 agggtgtgat gatatgagag tgggtgatta tatagaaagc tataaagaag tagaggaaca
    34141 agcaagtcta tgaacccaag tgagattaaa aaactacgca ctgaaagtat cttaaaagag
    34201 ctaatccctg aagctttagc aaatttagat gatgaaaatt tgaaaaattt gtgtgtagtg
    34261 gatgtagagt gtaaaaaagg cagatatgat gcttttgtgt atcttgataa gatgtttttt
    34321 aatgttcatg agcaagaaaa aattttatct tctttaaaaa aggcaagtag agctttgcaa
    34381 aattactgca tgagtgagca gggttggtat aggtgtccga attttcattt taaatttgat
    34441 gataggcttg agtatcaaaa ccatatggat gcactttttg aaaaaataaa aaaggataaa
    34501 aatgaatctt gaagcccttt gcaaagaagc agagcttagc ttttatgatg atgagctagt
    34561 aagtgaaaat ggcagaaaaa tttatagaat ttatgtgcaa aaagaaggcg gggtaaatct
    34621 tgatgattgt gcaaggctta gtgaaatttt atcgcctatt tttgatgtag agccacctgt
    34681 aaatggggag tattttttag aagtatcttc accaggactt gaaagaaaac ttagcaagat
    34741 agaacacttt gctaaaagta taggtgaact tgtgaagatc acaaccaatg aaaaagaaaa
    34801 attcgaagca aaaatcattg ctgtagatga tgaaaatatc actttagaaa atttagaaaa
    34861 taaagaaaaa actactataa
//
LOCUS       DAPIWU010000006        31621 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.006, whole genome shotgun sequence.
ACCESSION   DAPIWU010000006 DAPIWU010000000
VERSION     DAPIWU010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31621
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.006"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            3..3491
                     /locus_tag="RJ285_000219"
     CDS             3..3491
                     /locus_tag="RJ285_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HDV7383038.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILAQNRAWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEVKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFMNNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSIIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
     gene            3509..4978
                     /gene="putP"
                     /locus_tag="RJ285_000220"
     CDS             3509..4978
                     /gene="putP"
                     /locus_tag="RJ285_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDV7383039.1"
                     /translation="MEVVQINTPIAVMFVAYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGVISIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHVVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLAASAVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(4994..5221)
                     /gene="yedF"
                     /locus_tag="RJ285_000221"
     CDS             complement(4994..5221)
                     /gene="yedF"
                     /locus_tag="RJ285_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDV7383040.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(5225..6433)
                     /gene="yedE"
                     /locus_tag="RJ285_000222"
     CDS             complement(5225..6433)
                     /gene="yedE"
                     /locus_tag="RJ285_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HDV7383041.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKSKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFMIV
                     GIANIIGTMILALSYDFLPKALKEGVKINLLTEFGNLNGFFINLVLFILMFAFVVFYK
                     KHFFKNQLKG"
     gene            6573..6670
                     /locus_tag="RJ285_000223"
     tRNA            6573..6670
                     /locus_tag="RJ285_000223"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6607..6609,aa:Sec,seq:tca)
     gene            6698..7948
                     /locus_tag="RJ285_000224"
     CDS             6698..7948
                     /locus_tag="RJ285_000224"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDV7383042.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKHAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYTTRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            7945..8373
                     /locus_tag="RJ285_000225"
     CDS             7945..8373
                     /locus_tag="RJ285_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HDV7383043.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAREKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            8366..8884
                     /locus_tag="RJ285_000226"
     CDS             8366..8884
                     /locus_tag="RJ285_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HDV7383044.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEKQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            8977..9528
                     /locus_tag="RJ285_000227"
     CDS             8977..9528
                     /locus_tag="RJ285_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HDV7383045.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            9528..10646
                     /gene="carA"
                     /locus_tag="RJ285_000228"
     CDS             9528..10646
                     /gene="carA"
                     /locus_tag="RJ285_000228"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDV7383046.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            10643..11302
                     /locus_tag="RJ285_000229"
     CDS             10643..11302
                     /locus_tag="RJ285_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDV7383047.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGMLVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            11299..12510
                     /locus_tag="RJ285_000230"
     CDS             11299..12510
                     /locus_tag="RJ285_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HDV7383048.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            12513..13193
                     /locus_tag="RJ285_000231"
     CDS             12513..13193
                     /locus_tag="RJ285_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7383049.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            13319..14785
                     /gene="ccoN"
                     /locus_tag="RJ285_000232"
     CDS             13319..14785
                     /gene="ccoN"
                     /locus_tag="RJ285_000232"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HDV7383050.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            14798..15463
                     /gene="ccoO"
                     /locus_tag="RJ285_000233"
     CDS             14798..15463
                     /gene="ccoO"
                     /locus_tag="RJ285_000233"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HDV7383051.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            15468..15731
                     /locus_tag="RJ285_000234"
     CDS             15468..15731
                     /locus_tag="RJ285_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HDV7383052.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            15731..16594
                     /locus_tag="RJ285_000235"
     CDS             15731..16594
                     /locus_tag="RJ285_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7383053.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            16591..16812
                     /locus_tag="RJ285_000236"
     CDS             16591..16812
                     /locus_tag="RJ285_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HDV7383054.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWSLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            16809..16910
                     /locus_tag="RJ285_000237"
     CDS             16809..16910
                     /locus_tag="RJ285_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383055.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            16907..17509
                     /locus_tag="RJ285_000238"
     CDS             16907..17509
                     /locus_tag="RJ285_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383056.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            17496..18017
                     /locus_tag="RJ285_000239"
     CDS             17496..18017
                     /locus_tag="RJ285_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7383057.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            18014..20380
                     /locus_tag="RJ285_000240"
     CDS             18014..20380
                     /locus_tag="RJ285_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HDV7383058.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEINL
                     SKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFKYFEKLLALFLENEKQELIYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSCSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYSNNDFDIKV
                     FANLLNKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK"
     gene            20377..23142
                     /locus_tag="RJ285_000241"
     CDS             20377..23142
                     /locus_tag="RJ285_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HDV7383059.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVGTYKIAISEILQKDKVRAFIVYCLEN
                     EIQILEI"
     gene            23226..23651
                     /gene="rplM"
                     /locus_tag="RJ285_000242"
     CDS             23226..23651
                     /gene="rplM"
                     /locus_tag="RJ285_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDV7383060.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            23654..24043
                     /gene="rpsI"
                     /locus_tag="RJ285_000243"
     CDS             23654..24043
                     /gene="rpsI"
                     /locus_tag="RJ285_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDV7383061.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGFDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            24168..25127
                     /gene="cadF"
                     /locus_tag="RJ285_000244"
     CDS             24168..25127
                     /gene="cadF"
                     /locus_tag="RJ285_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HDV7383062.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            25127..25768
                     /locus_tag="RJ285_000245"
     CDS             25127..25768
                     /locus_tag="RJ285_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7383063.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKAHSIVFLNAYEAVNYIARLN"
     gene            25861..29421
                     /gene="nifJ"
                     /locus_tag="RJ285_000246"
     CDS             25861..29421
                     /gene="nifJ"
                     /locus_tag="RJ285_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HDV7383064.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            29445..29756
                     /locus_tag="RJ285_000247"
     CDS             29445..29756
                     /locus_tag="RJ285_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDV7383065.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            29734..31146
                     /gene="mshL"
                     /locus_tag="RJ285_000248"
     CDS             29734..31146
                     /gene="mshL"
                     /locus_tag="RJ285_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HDV7383066.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKIPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNENHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            31139..>31621
                     /locus_tag="RJ285_000249"
     CDS             31139..>31621
                     /locus_tag="RJ285_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7383067.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     Q"
BASE COUNT        11374 a         3819 c         5793 g        10635 t
ORIGIN      
        1 aaatgataca aaaagcttta gccttagctg aagaattgca aggacaaata gaagccaata
       61 tttcaaattc tgaaaaagaa ttccatgcta aaatgcaaaa acttcttaat aatcccaaaa
      121 ataaagttat gcttatagag cttttagatc gttcttttag atgtaaagat aaaaatgcaa
      181 gttttgagct tatagaatat actttgagta aatatggcat agcggatttt tttagcactt
      241 ttgaaaaatt cctacttttt agctttttaa attttggcaa atttgctcct aatttaagtg
      301 tacctttttt tgtcaaacat ttaagagaag atactaaagc tatggttcta gatgcaaatc
      361 ctagtgtttt agaaccacat attaagaaaa gaaaagagca agataaaatt accttaaatg
      421 tgaatttaat cggcgaagag gttttaggtg aagctgagag taaatatcgt atgcaaaaat
      481 acgaagaagc cttaaaatca agctatatca cttatatttc cataaaaatt actactattt
      541 tttcacaaat taatattata gattttaatt attctaaaga agaggtcgta aaaagactag
      601 attatcttta tgctttagcc ttagaagaag agaaaaaaca aggtgtatct aaatttatca
      661 atcttgatat ggaagaattt agggatttag aactcaccgt tgcagctttt atggaaagtg
      721 tggctaaatt tgatattaaa gcagggattg ttttgcaagc ttatattcct gattcttata
      781 agtatcttaa aaaacttttt gctttttcaa aagagagggt tttaaaaggt atgaagccta
      841 ttaagatccg ttttgttaag ggtgctaata tggaaagtga agaaaccatt gcgtctcaaa
      901 ggggttggga gcttcctact ttttacaaaa aaatagatac tgatagtaat tataataaaa
      961 tgcttgattt tattcttgaa ggagacaatt ataaatacat caacatagga attgcaagtc
     1021 ataatatctt tgagattgct tatgcttata cacgcataag tgaagtgggt gctttggatt
     1081 cttttacttt tgaaatgctt gaaggtatga gtttgcaatg ttcttatgaa ttatctaaaa
     1141 tgcatgatct aatcctttat gccccagttt gcgatgaagc acattttaac aatgccattg
     1201 cttatcttgt aagacgcctt gatgaaaata caagtgaaga taattttatg cgttattttt
     1261 tcaatcttaa agtaggagat aagaactgga atatccaaaa agaacttttt ttaaaatctt
     1321 tagaaggcat aaaaactctt gataatacta cacatcgtaa gcaagataga aataaagaat
     1381 caaatatcat aagttcttat gaaagtaaaa aatttagcaa tgaaagcgat acggatttta
     1441 ttttagcaca aaatagagcg tgggctaaag aaattaaaac taaatatgaa aatttaaaag
     1501 attatgatgt ttatcctgtt ataggcgaac ttgattttaa agcagaaaat ttaaatgttt
     1561 tagaagttaa agataagatc gaagatagag ttataggaaa ggcttattta gcaggagaaa
     1621 aagaaatcaa acaagcttta gaagtagcta aaaattccaa atttacacaa aaaagtcatg
     1681 atgaaattta tcaaatttta gccaaaagtg caaaactgat gagagaaaga agaggggatt
     1741 tgataggttt ggcagcttta gaagtgggca aaaccttttt agagatcgat cctgaagtaa
     1801 gcgaggctat tgattttata gagttttatc cgcactcttt agaagagctt aaaaaacaaa
     1861 atccaaaagt tacattcaca cctaaaggta taggggttac catagctcct tggaattttc
     1921 ctataggaat ttcagtaggt actatagctg caccactagc cgcaggtaat gtggtgattt
     1981 acaaaccttc ttcactttca actctaacag gttatatgct ttgtaagtgt ttttgggatt
     2041 cgggtattcc aaaagatgct ttgattttct taccttcaaa aggaagtgat atttctaaat
     2101 atttacttat tgatgaagcg attaaatttt caattcttac aggaggagag gatactgctt
     2161 atgctatgtt aaaagctaat ccaaccttgc ttttaagtgc tgaaactggc ggaaagaatg
     2221 cgactatagt ttctaaattt gctgatcgtg atagtgcgat taaaaatatc attcattctg
     2281 cttttagtaa tagcggtcaa aaatgttcag ctacttcttt gctagtctta gaagaagagg
     2341 tttatcatga tgaagaattt aaaaagactt tagtggatgc tgcgagttct atggcagtgg
     2401 gcaatccttt tgaatttaaa aataaattag gtactttagc tgataagcca agttctaaag
     2461 ttcaaaaggc cttagatgaa ttacaacctt atgaagaatg ggcattaaaa cctaagtttt
     2521 tagaggataa tccttatttg atgactccag gcataaaata tggcactaaa aagggtgatt
     2581 ttactcatat gaatgaactt tttgtaccga ttttaagtgt gatgaaggct aaagacttaa
     2641 aagaagctat tgatatagta aattccacag gttatggttt aactgcaggt tttgaaagct
     2701 tagatgaaag agaatgggag tattttcaca ctcacataga agcaggaaat atttatatca
     2761 ataaaccaac cacaggggct atagtgctgc gtcaaccttt tggtgggatt aaaaaatcag
     2821 ctataggttt gggtagaaaa gtgggaattt ataattatat cactcaattt ttagaggtta
     2881 agcaagaaga ttttgatgat catttaattg aagataaatt ttcaaaaaaa ttagcacaaa
     2941 tagatttaaa agaagcacaa gattttatga acaatttaat taaaatgtct caatcttatg
     3001 cttatcatta taaaaacgag tttagtgttt caaaagatta tgtcaatatt cgtggagaag
     3061 ataatctttt ttcttatact aaaataaaga atatggtttt aagactttgt ggaaatgaaa
     3121 gcttaaaaga tgttttaggt gtggttttag gtgcaaatat tgcaaatatt gatctaagta
     3181 tcagttatga tgaacaagat gttagtataa tagaacgaat tgttcaaagc ataggagcaa
     3241 aagtattgtt tttaaaagaa aataaagaaa attttatcaa gagtattaaa gaatatgaaa
     3301 gagtgcgtta tttagcaaag ccagatgtaa atgatgagat ttataaagag gctgcaaagc
     3361 ttgctaaaat cattataaga gaaaagccat tattaaatgg tcgttttgaa cttttaaatt
     3421 attttaatga aaaagcttta agtatatctt ttcatcgtta tggaaattta ggcattagag
     3481 caatatctta atgatcaagg agagattgat ggaagtggtt caaattaata ccccaatagc
     3541 agtgatgttt gtagcttatg ccttattaat gctttatata ggtttttatt tttataaaca
     3601 aaataaaaat tcagaggatt attttctagg tgggcgtact atggggcctg tgatatctgc
     3661 acttagcgca ggggcttctg atatgagtgg ttggctttta atgggtttac cgggagcttt
     3721 atatgtaagt ggttttatag attcttatat tgcaattggg cttactatag gagctagttt
     3781 aaattggatt tttgtggcaa aaagacttag aatttatacc agtgtgattg caaattcttt
     3841 gactattcct gattattttg aaactcgttt tgatgatgat aaacatatac tgcgcatcgt
     3901 atgtgcggtg gtaattttga tattttttac cttttatgtt tcatcagggc ttgtaagcgg
     3961 agcaaaactt tttgaaagta cttttggtat cagatacgat tatgctttaa ctactggaac
     4021 gattattatt gttgcttata cttttttagg tggatataag gcggtttgtt ggacggatat
     4081 gatacaaggg cttttaatga tgatggcttt aattattgta cctttggtta tgctttatca
     4141 tttaggtggc tttggtgaag cgatgaatat agtaagagaa ataaaaccac aagctttatc
     4201 tatgggcgaa ggagtaggag ttataagtat tatatctgca cttgcttggg gtttgggtta
     4261 ttttggtcaa ccacatattt tagtgcgttt tatgtcgatt cgttctacta aagatattcc
     4321 tatggccact tttataggta ttgcttggat ggcggtttgt cttttaagtg cttgtatgat
     4381 aggtattttg ggcatagctt atgtgcataa atttgaatta agtttgcaag atcctgaaaa
     4441 gattttcatc gtgatgtcgc agcttttatt taatccttgg atagcaggta ttttactcag
     4501 tgctatttta gcagctatta tgagtacagc aagttcacaa ttgctggttt caagttctac
     4561 tatagcggaa gatttttata aaaagatttt tagagaagat gcgccaagtc atgttgtatt
     4621 aaatttaggt aaattaggtg ttttattggt agctgtaata gcgtttttga tttctactga
     4681 taaaaactca agtgttttga gtatagtttc ttatgcatgg gccggatttg gagcttcttt
     4741 tggttctgta atgctttttt ctttattttg gagtaggatg acaagagtag gagcaatctt
     4801 aggtatgata acaggagctg ctactgtggt actttggaag aattttgcaa attcgggtct
     4861 ttatgaaata gttccagggt ttttagcagc ttcggcggtg attattattg caagtttgtt
     4921 tacaaatgta agatctggaa ctaaagcagc ttatgaaaag atgttaaaag agctttgaga
     4981 acaaaagcct tttttaaggc ttttgtatta aaaatcttag cgtgggtcca ctttgatcga
     5041 tttcaagcac tttaaaacca cggttttttg catcttgagg tatggaattg atactttgtg
     5101 gacaatcaca aagtacttct aaaatttctc cacttttaag cttaggtaag acatcaagtg
     5161 ttgctatagc aggataaggg caagcttcac cttgcaaatt taaactataa gtaattttca
     5221 ttgtttatcc tttaagttga tttttaaaga agtgtttttt gtaaaatacc acaaaagcaa
     5281 acattaggat aaataaaaca aggttgataa aaaatccatt taaatttcca aattcagtta
     5341 aaagattgat ttttacacct tctttaagag cctttggtaa aaagtcataa cttaaggcta
     5401 aaatcatagt tcctattatg tttgcaattc ctactatcat aaaatgactt tgtccttcaa
     5461 aggcacgata agtccaacca cactcacaac ctccggcaaa aactatacca aaaccaaata
     5521 aaaatgcccc cacagctaca gcaggagaaa gttctatgag tttactagta tgaccctgca
     5581 agataaaagc aaaagcgatt aaagaggcga taatcatacc gattaatgcg ccttttatag
     5641 cattatctct accaaataaa aataaatctc taaagcaaga agtaaaacaa atttgccccc
     5701 tagaaataac aaaaccaaaa acaaaaccaa aaatcagtgc taaagctaga agactttgtt
     5761 tgttttgtgt gctgatattg ccatttgtaa aaacaagata aaacacccaa accaaaaagg
     5821 ctatgaaaag caatatgcct aagttaaaat atagttttgt acgcaaactt tgcttgttta
     5881 gcggcaagtt ttctttattt acccgttcta atttagcttt agatttaaaa aaggaagtgt
     5941 tgcaaatttt tactcctaga taaattccta aaaccataaa aacagtaaaa agccaagtgt
     6001 gtaaagaaaa ataaggtaaa cctgtaaaaa aattagctaa attgcatcca aatgcaagtc
     6061 ttgctccata tcctgaaaga attccaccta ctattgcttg aaaaattctt atattgctag
     6121 caggtagacg aaatttgact ttgttagcta aaagtgcggc tactaaacaa cctataaaca
     6181 tacctatgag cataatacca tcagttcttg ttaaaggggt tccatttaaa ttttgctttt
     6241 ggtaataaga atatccatct aaattcatac ctaaaagttc taaaaattca ccaccccaac
     6301 gcgtcatttc tccagtaaca gcccaaactc caccaaaaat tccaaaatac actgcactta
     6361 aaattccaag tgcaatcata gaacgggaat tgtcccaaaa attgattaaa tatttttgtt
     6421 taaaagaatt caaagaaaga tcctaaaaat gtaatcatca aaacttgatg ctaaaaaaga
     6481 gtgagattat agcttaaatt taatgtgaag tcaaaaagaa tattgataaa tttattttgt
     6541 ttttcattaa aaatcgctat aattatcact ttggaagatt agcgtatctg gtgatcgcca
     6601 ctgacttcaa atcagatgaa aggatagttg actattcttt ggggagttcg attctctcat
     6661 cttctcgcca atattaagta aaatcaagga aatttttatg agcaaagcag atattattgt
     6721 cggcattcaa tggggcgatg aaggaaaagg caaggtagtt gataaattat gtgaaaatta
     6781 tgattttgtt tgcagaagtg caggtggaca caatgcagga catacgattt gggtaaatgg
     6841 tgtaagatat gcgcttcatc ttatgccaag tggagttttg catccaagat gtattaatat
     6901 tatcggaaat ggagttgtgg tttctcctga agtattgatc gctgaaatgg ctcaatttga
     6961 aaatttaaaa ggtagattat atatcagcga tagagctcat ttaaatttaa aacatcattc
     7021 tttaatagac attgcaaaag aaaaactcaa aggcaaacat gccataggaa caacaggtaa
     7081 gggtatagga ccttcttatg cagataagat taatcgtaca ggacatagag ttggagagct
     7141 tttagaacca caaagacttt gcgaggcttt gataaaagat tttgaagcta ataaaacttt
     7201 ttttgaaatg cttgaaattg aaattccaag tgctgaagaa ttgcttgctg atttaaaacg
     7261 ttttaatgaa attttaactc cttatattac agatactaca agaatgcttt ggaaggcttt
     7321 agatgaagat aaaagagtac ttttagaagg agctcagggc tctatgcttg atattgatca
     7381 tggaacttat ccttatgtta caagctcaag tactatttca gcaggcgctt taacaggact
     7441 tgggttaaat cctaaagaag cgggaaatat tataggtatt gtaaaagctt atacaacgcg
     7501 tgtgggaaat ggagcttttc ctactgagga taagggtgaa gatggagaaa aaattgcgca
     7561 aattggaaaa gaaattggcg taagcacggg acgtaaaaga cgctgtggat ggtttgatgc
     7621 agttgctgta agatatacag caagacttaa tggtcttgat gctttatctt tgatgaagct
     7681 tgatgtttta gatggttttg aaaagataaa aatttgtcgt gcttatgaat ataagggcat
     7741 ggaaatcgac tatataccaa gcgatttaga aaatgttcaa cctatttatg aagaaatgga
     7801 tggttgggat aaagtttttg gtataaaaga ttatgattta ttgccagaaa atgctaaaaa
     7861 atatatagca agacttgaag agcttgcagg ggttaaggta aagtatattt ctactagccc
     7921 tgaaagagat gatactatca tcttatgaaa agtaaatata attctgttgt aaaggtaaga
     7981 aaacaacaac ttgataaagc agaatcaaat cttaatcaag ccaaacaaag acagcttgaa
     8041 catgaaaaag cttatgaact ttcacgccaa gagtgtgaaa gtttaggcgt attgccaaaa
     8101 tcaggatcta tagcagagtt aagatcgaat ttaagtatgg cgcaagtagg acgcgaggct
     8161 ttggcaagag ctagggagaa agtagaactt tctaaaaaag aaatgaatca ttatcagttt
     8221 ttatatcaaa aagcacattt agattatgaa aaaatgaagg ttttagaagc cgaggaaatt
     8281 aaacaaaagc aaaaagaact tgccaaggct gaagaaaaat ttttagatga aattgcaatc
     8341 agtcgttttt tcaaaggaga aaaagatgat taaaaaattt atattgttag tttttatttc
     8401 aagtgtagtt tttggagctg aacaagattg tgagcagtat tttgaagcta gaaaagctca
     8461 aattgaattg caaactagag aatttgatga agcaagacaa tctttagaag cttataaagc
     8521 ctcttttgaa gctttgcaaa aagaaaggct tgaaaattta gaaaaaaaag aggctgaggt
     8581 taatgcaact ttggcaaaaa ttgaagaatt aaagcttgaa aacgcaaggc ttgtagaaaa
     8641 acaacaaaag attttaaatt caatcaatga taaaactcaa ggtagggtta aagaaattta
     8701 ttcccaaatg aaagatgcag ccattgcaga tgttttaagt caaatggatg cagaggatgc
     8761 aagcaaaata atgctttctt tggaatcgcg taaaatttca ggtgttttat ctaaaatgga
     8821 tccaaaaaaa gctagcgagc ttactttgct tttgaaaaat ttagataata atgctagtaa
     8881 ttaggtgatt aaaataatga aaatttttca tttttaacat tcttttacca aaaataagct
     8941 attatttcaa acattatcaa ataaaaggtt tttaagatgc gtataaaatt accacatatt
     9001 ccttatatcg caaataaaat gatgttagat atagctaatt cttcttttgt agaaattaaa
     9061 gatcaattag aaaagcttaa ggtatgtata atagaagttt tagagaaaga tattctaaat
     9121 gaaagaaaat tagatgaaag agtaaaagag cttttagagc aacaagaaga tgaaatggag
     9181 cttatgcaag tagatcgtaa aaatatgttt tggcttgtga agaaaaagtt agctcctgaa
     9241 tttaatgtga ttttagattc tgaagataga cataatcatc tagcgcatca aattttagaa
     9301 gaacttgtag agaatgatta tattaatttt atagtgagtg aaaatagagt taaaaattta
     9361 atcttttcaa gcatagagtc ttatcttaaa atttatgaaa aacttgaaga tgaggtttat
     9421 gagaaaatta gcaattataa aacaaaacct attccaggta gcgaagagta tgatcttatc
     9481 tttgaaaaac tctatcaaga agagctcaga aaaaaaggta tgttttaatg aaggcttata
     9541 tttatttaga aaatgatatt tttttaagtg ctaaggcttt tggaaagagc ggtacttttt
     9601 ttggagagct tgtatttaac acttctttaa cagggtatca agaaattatt tcagatcctt
     9661 cttatgcagg gcaatttatc gtattttcca tgccagaaat tggtatagtg ggaaccaatg
     9721 aaaatgataa tgaaagcaag gaaatttttg caagtggtgt tttaatgcgt gaattaagtt
     9781 ccagtttttc aaattttcgc gctaaagaaa gtctgcaaga ttatcttgaa aaacatggaa
     9841 aaataggaat ttatgaactt gatacgagat atctagtaaa aatgataaga aataatggca
     9901 atttaagagc tgtaatttca actgaaattt caaataaaga agatttaaaa atcgccttag
     9961 aaaaatcagc aaaaattgat gaagtaaatt ttgtaaaaga agttagcact aagaaaaatt
    10021 attctcataa acaaggcgtt tggaacgcta gttttcaaaa atttaatgat gctaaaagaa
    10081 gtgagaaaaa agttgctgtt atagattatg gtgttaaaac aaatatctta aatgaacttg
    10141 tagaagtagg ttttgaagta gaagtttatc catataatgt taaagcagat gagttgatta
    10201 ctctgtataa aaaaggtgaa attcaaggcg tgtttctttc taatggtcca ggtgagccaa
    10261 ggattttaaa acaagagatt gcagagatta aaaaacttgc agaagctaaa attcctatgc
    10321 ttggaatttg cttaggtcac cagcttttaa gtaatgcttt tggatatgaa acttataaaa
    10381 tgaaatttgg acaacatgga gcaaatcatc ctgtgatcaa tcttgataca aaaacggtag
    10441 aaattaccgc acaaaatcat aattataatg ttccagaaga attagctcaa gtggctcata
    10501 tcactcatag aaatttattt ggcgataatg ttgaaggagt aagatataaa gactatccta
    10561 ttatttcagt acaacatcat ccagaaagtt cttcaggtcc tcatgaaagt aagtatattt
    10621 ttaaagaatt tatgaatttg atgtgagtat agatttttta gctattatca gcgttgcttt
    10681 tttatctagt tttggacact gctattctat gtgtggtggt tttaatttac tttttataaa
    10741 tttgaattca aaaagcaata atttattttt attaactttt atttataatt tgtttagaat
    10801 ttttgcttat attgttttag ggataatttt tgggactttt gggaatatct tggcaatcaa
    10861 tgctaaggtt caaagtttgt cattttttat tcttggtata tttatgatga ttttgggttt
    10921 tgctcttatt tttagaggca atatgttatc ttttattgaa aataatgttt tttttgatag
    10981 ttttgtaaag aaaattatta aaaaatctaa aaattttaaa ggattaaaat cagccatatt
    11041 tttaggattt tcaaatggtt ttgttccttg tggattggtg tattttttta tagccaatgc
    11101 aatgagtaag caaaatattt ttgaaggtat gttggtaatg atgatttttg gaatatcaac
    11161 tttacctgcg atgttatttt tttctaaaat ttcacagttt tttagtgatt ttttgaaaaa
    11221 tttatttaat tatttatcgt atggcgttat tgtttgttac ggtataaatc ttgcctatat
    11281 aggttttaag gcttttcaat gaaagatttt tttaaagatc agttttttaa agctcttgaa
    11341 aaaaatacaa ttttttcaag agctgatgtt caaggaaatt taatttttgt cagtgataag
    11401 ctttgtcaaa taagtggata tagtaaaaaa gagcttatag gaaaaaaaca ttcaatattt
    11461 aaacatccag atgttgagga atgttatatt gaagaacttt taaaaaaact ttcatataaa
    11521 aaaccttatc aagttatttt taaaaatatt gataaattag gcaaaacttt ctatcttgaa
    11581 actttattaa tccccatatt ggataaaaat aatgaattaa tagaaatagt agcattctct
    11641 catgatgtta gtaattcttt taagcttaat gaagagcttg ctctaaatca cgctaaatta
    11701 agagaattaa gtattaatct tgaaaataca gttaaaaatc accaacaaga atttatacag
    11761 ttaggtaaaa aatttgagaa aaaaatgcaa attgccttgg aaaaaaatga aaaagatatt
    11821 aaaatagcat atgaagagat tttgaaatct tcattagaac aaatgattag tgatatagca
    11881 catcaatgga gacaaccgtt aaatgagctc ggtattgcca tgtttcaaat gaagcaaaat
    11941 cttaaagatg aaaaaggatt tgctgaaatt tactcacaat caaaagatat gattaaaaat
    12001 atgtcagaaa caattgatgt gtttagaact ttgtttaaca aaggagtaga gcagtgtgta
    12061 tttataaaag agactttaaa taaagccttg gaaattgctt ttgaaactat agaaaaaaat
    12121 catgtaaata ttaatattgt ttcgaaaagt gattatgaag ttttggcata tgagaatggt
    12181 ttaataagag tttttcttaa tttgatttta aattcaatag aagcatttaa aaacaaaaaa
    12241 aggaaaatca taacaataaa tttttcaaaa tttggaaaaa attatctgaa aattacaata
    12301 aaagataatg ctggtgggat tgataaagaa aatttagata aaatttttca accttatttt
    12361 acaacaaaac atcctagtca aggtatagga gtaggacttt atataagtag acaaattatc
    12421 gaaagtttcc aaggaaaaat aaaagttaaa aatggaaaag acggggcttg ttttgagata
    12481 tttttaaaac taaaagagag ggtagagtag aaatgtcaca agaatgtaaa gaattgataa
    12541 tattagtagt tgaagatgag gttaaggcta gagaatcaat gattaatata ttaagcgaac
    12601 gctttagtaa agtaatcgga gctcaaaatg gagatgaggg gcttaaaaaa tttaaaaaat
    12661 ttaagccaga tttagttatc acagatattg ctatgcctat tatggatgga ctggatatgg
    12721 caagagagat taaagaaatt tcagatgatg tcccaattgt tgttcttagt gcgtattcag
    12781 agaaagagag acttttgcgt tctattgata ttggtataga taaatatttg attaaacctg
    12841 ttgatataga agagttgttt aaagttttag attatctgat aggtgaaaaa attgaagcaa
    12901 atatgcttgt aaaaatttct gaagaatatc aatttaacaa aactaaacga actttaattt
    12961 acagtggtgg agaaattgtt ttaactaaaa aagaattggc ttttatttct ttgcttttaa
    13021 agcaacctgg agctttggtt ttgcatgaag atattaagaa aaatgtttgg ataggtgaac
    13081 atgtgagcga tactgctgtt agaactttta taaaaagagt aagagataaa gtgggtgaag
    13141 attttataaa aaatgtgcca agtttaggtt ataagataaa tatcaataaa taagactgat
    13201 ttagccttaa aatataaaac ataacaaatg attaacaaaa ttatcatttt taagaaaaaa
    13261 tgtataatta atattctata atattctctt gttatcaaaa attttaagga gaaagtcgat
    13321 gcatccaggt aatgtattaa attacgacta tacggttgca agatatttta tgtttgcgac
    13381 catattgttt ggcattgttg gtatggctat aggaactctt atagcttttc aaatggcata
    13441 tcctaattta aattatttag caggagaata tgccactttt tcaagactta gaccacttca
    13501 tacttcaggt gtgatttttg gttttatgct ttcagggatt tgggcaactt ggtattatat
    13561 aggtcagcgt gttcttaaag tgagtatggc tgagtcaaga tttttaatgg ctgttggtaa
    13621 gcttcatttt tggctttata tgcttactat ggttttagct gttatatctt tgtttatggg
    13681 tgtgactaca tctaaagaat atgcagagct tgagtggcct ttagatattc ttgttgttct
    13741 tgtttgggtt ttatggggtg taagtatttt tggacttatt ggaattcgcc gtgaaaaaac
    13801 cctttatatt tctctatggt attatatagc tacattttta ggtatagcta tgctttatct
    13861 ttttaacaac atggaagtac caacttattt tgttactgga atgggtaaat ggtggcatag
    13921 tgtatcaatg tatgcaggaa caaatgatgc tttagtacaa tggtggtatg gacataatgc
    13981 tgtggcattt gtatttactg tgggtattat tgctcaaatt tattacttct tgccaaaaga
    14041 aagtggtcag ccgattttct cttataaact ctctttattt gcattttggg gcttaatgtt
    14101 tgtttatctt tgggcaggtg gtcaccattt gatttattca actgtacctg attggatgca
    14161 aactatgggt tcggttttct ctgtagtatt gattttacct tcttggggtt cagcgattaa
    14221 tatcttgctt actatgaaag gtgagtggag tcagcttcgc gagagtccgt tgattaaatt
    14281 tatgattttg gcatcaactt tctatatgtt ctcaacactt gaagggccaa ttctttcaat
    14341 taaatctgtt aatgctttag cacactttac agattggatt ccaggacatg ttcatgatgg
    14401 aacattaggt tgggtaggat ttatgactat ggctgcgctt tatcatatga ctcctagagt
    14461 tttcaaaaga gagctttata gcaaatcttt aatggaagct caattttgga tccaaaccac
    14521 aggtatagtt ctttattttg cttcaatgtg gattgcgggt attactcaag gtatgatgtg
    14581 gagagcgaca gatgagtatg gtaacttgct ttatagcttt attgatactg tggtggctat
    14641 tgttccttat tattggatta gagcgattgg tggattgttg tatcttatcg gtttctttat
    14701 gtttacttat aatatttaca aaacaattgc ttgtggaaga gtgcttgata aagaaccaaa
    14761 aagcgcttcg cctatggcag cataaaaagg agaaaatatg tttagttggt tagaaaaaaa
    14821 tccattcttt tttgctgtag ctgtttttgt agtgattgct tatgcaggca tagttgaagt
    14881 tttaccaaat tttgcagaaa atgcaagacc aattgaaggt aaaaaacctt atacggtttt
    14941 acaacttgca gggcgtgcag tatatattaa agatagttgt aatgcttgtc attcacagct
    15001 tattcgtcca tttaaatcag aaacagatcg ttatggtatg tattctgtaa gtggtgaatt
    15061 tgcttatgat agaccttttc tttggggctc aaaaagaaca ggacctgatc ttgctcgtgt
    15121 aggaaattat agaacggctg attggcatga aaatcatatg tgggatccta cttctgttgt
    15181 tccagattct attatgcctt catataagca tatgtttaaa aataatgcag atattgaaac
    15241 tgcttatgct gaggctttaa ctgtgaaaaa agttttcaat gttccttatg atgcagaaaa
    15301 tggaacaaaa cttggttctt gggaggatgc acaagctgaa gtaaaagctg aagctcaggc
    15361 tatagttgat caaatgaaaa atcaagaagt aaaagatgct tttgctaaag gtgaaatcaa
    15421 agaaatagtt gctttgatcg cttatttaaa tagcttaaag taagatgatg gaacatttat
    15481 caatagtttt tgatgtgatt aaaaatttaa tcacatttga tttagcaaca gttcaaaaac
    15541 atgagtggga gattttccaa ggttatggtt tttttgcact cgtgatgttt ttgtcaatag
    15601 tattatatgc gtatttgtat catttatata gaacagaaaa aaaaggcgag agaaattatg
    15661 aaaattatgc aaaccttgcc ttaaaagatg atattgatga tagtgtatta gaaagtaaaa
    15721 ggagtgctta atgcaatggt taaatttaga agataatgtt aatctcttat ctttaattgg
    15781 agctattctt atcattttaa tcacactagt tattgtgggt agaatgttta agcaaatgaa
    15841 agaaaagaaa ggcgagtcag agcttagtga acatagttgg gatggaatag gagagtataa
    15901 aaatgctgtt cctactggtt gggctgtggt atttttcctg actattgttt gggctatttg
    15961 gtattttcta tggggatatc ctttaaattc tttttcaagt ataggtcaat ataatgaaga
    16021 agtagcaact cataatacaa aatttgaaga aaaatttaaa aatttatctc ctgaagataa
    16081 aatagcaatg ggtcaaaata tctttttagt tcagtgttcg gcttgtcatg gaattacagg
    16141 agatggtatc aatggtaaag ctcaaaattt aaatatttgg ggtagtgaag aaggtataat
    16201 caatgtaatt aaacatggtt caaaaggtat gaattttcca ggtggagaaa tgcttggtgc
    16261 tgctgattta ggtgtagcag aagaagatat ccctgctatt gctgcttatg tagcaaaaga
    16321 tctttcagct attaagaaaa ctgcaaatga aaatttagta gcaaaaggta aagaagctta
    16381 tgcaacttgt gcagcatgcc atggagaaga tggaaaaggt caagatggaa tgttcccaga
    16441 tcttacaaaa tacggttctg cagcttttgt agtagatgtt ttacatagtg gtaaggctgg
    16501 ttttatagga acaatgccga gttttccaac acttaatgat attcaaaaag aagctgttgg
    16561 cgagtatgta atttctcttt caaggggtga atgatggaaa ataataatag atgcgtgttt
    16621 tctctttcag gtgttacagg tatgttaatt gctacggttt tgttgcttgc tatcttagca
    16681 gttttaacta tttggagtct taaagctcag caagaagtga tgcaaaagcc atatagtctt
    16741 aaagatgtac aaagtgtaaa gatgtttggt tcaaaagaac aagatcatag aagtataaag
    16801 gaagcacaat gagtaaggct ttggaatatt taattgttat tggtttagtt gttgctgctg
    16861 caatcaccgc ttggtcggtt ttgaccgtaa atcatcttca tataggatga aaaaaatatt
    16921 acaagatggc ttttttttag ctatcttctt ctttgtttta ttgccttcta gggtttttgc
    16981 tcttgatgct gtacttttta atgaaaatat tttaagtcaa aaagtaagta acgagattaa
    17041 tcttatagga aaagagcttt accaaaaaag taatattttt atcggcgtta tggttggtga
    17101 taaaactgaa attgaaactt tattaaataa acaaaaagaa cttcctcaat cttatatatt
    17161 gcttcttttg tcaaaaaatt ctcacaaagt tgatatagtg ggctcaaaag gtgctttagc
    17221 tttgattgat aaagaagctg tgcttagtcc ttatcctgga acaggatcta ttttgccgat
    17281 attagctaca aataaaggtg atatttataa tgctgctata cttaatggtt atgcagatat
    17341 tgtagatcgt gtggcaaaat ccttgggatt acaattagaa cattctatag gtaatgcaaa
    17401 tcgtgatact atcaatattt taagaatact tatttatgga tttatttgct ttgcattgtt
    17461 atactatgca caaagaagaa taaagaggaa aaaaaatgtt agaaactaaa aaaagttttt
    17521 ggccttatgg tattttgctt tcacttttgg ctataattat tgcttgtatt gtaacgattt
    17581 ttatagcaag tcaccatcct gtgtatgagg atgattttta ttttgactct tatcaaaatg
    17641 ttgaaaataa ttacaatcaa atacaaaaac aacaagtaaa ttttgataaa ttttttaaag
    17701 taaattttca aaatgataaa atcactttta taggtaaaag aaaaattcct agttatgaag
    17761 tggatcaaaa ttcctatgtt gcaaatttta aaatttctgc attacaaaat ataaattcta
    17821 atgatttaaa agttcaagtt cttcttacaa gaccattcac taaaaatttt gatcaaaagt
    17881 tagaaggaca agttaaaaat ggaattttaa gtatcgcttt acctaaatta gataaaggta
    17941 gatgggagct taagctaaag ttttatgcaa atcaagaaac agtgggtttt tttagctacg
    18001 aattaaatgc tcaatgaaat taagaatttt tagctcttca aggcaaatta gagaatatta
    18061 taatcaaaaa aaacagcaaa atgctttatt agatagtgct attcatatag gtgaattttt
    18121 agataaagtt tgtttgagca attttcataa agcaagttct tatgaaagtt tgcttttaat
    18181 gcaagaagct tgtctaaaaa gtaaggattt agaaaaaaaa ctaggaattt cggtagaatt
    18241 ttttgctttt ttgaaaaata acgaatatct tttttctttt tttaaagaac tgagtttgga
    18301 aaaaaaaagc atagaagatc ttaaaaacaa tgattattat gccacctata atgaacattt
    18361 ggaaatttta gatgaggtat ataagaatta tcttgctttg cttgaaaaga attcttttta
    18421 tgatgatctt tctttaccta aaaattacac tcttaataaa gattttttag atgagtatga
    18481 agctatagtt tatgatttgc aaggtttttt aagtaaattt gaagaaaatt tattaagtga
    18541 aatttctcag attaaagaag tggttttaag ttttaaaacg agtaaattta atcttgaata
    18601 tcttttaaaa cttgattttt taaaaatatt tgatttaaaa ataaacactc attatgaaat
    18661 caatctttca aaacaagaga tcttaaaaga agaaattttt aaaacaaaaa attcaaaaat
    18721 gaaactcaaa tcttttgaat taagggcttt gcaatgtgct tttgttatgg atgaaatttc
    18781 acattttgta cgcaaaggtt taaagcctga aaatattgca gttataactc cagatgaaag
    18841 tttttgtgag tttttaagac tttttgataa agacaatatg cttaactttg caagtggaat
    18901 tagtattaaa gagagtttgt tttatcaaaa atttcaagca ctttatgaaa gtgctagtag
    18961 tgcttctttt gtctataaaa atcaagagga ttattttgaa gacacgcaga tgatttttga
    19021 ttatcacaat acgcttttac attctttaaa acttgatttt atagagttta aaaagtattt
    19081 tgatgagaaa tgtgatttta aatattttga aaaattactt gctttgtttt tagaaaatga
    19141 aaagcaagag cttatttatt tgatacgaaa agaactttat tttattaaag atttattgaa
    19201 aaatcagtct ttaactctta aagagttgat ccatcttttt ttcatgcaaa tttcacaact
    19261 ttcccttagt gatgtaggtg gaggtaaggt tacggtaatg ggacttttag aaagtcgtgg
    19321 gctttgtttt gatggagtga ttttggttga ttttaatgaa gaatttattc ctaaaagaag
    19381 tgttaatgag ctttttttaa acaatgaagt gcgtaaaaaa gcaggattga ttagctatga
    19441 tagaagagaa aatttacaaa gattttatta tgaaagcttg atgaaaaatg ctttagaagt
    19501 aagtatttgc tttgtggaaa atgaagaaaa aagcaaatca cgttttttag atgaacttga
    19561 ttttgacttt ttttatgaaa ctcatatcca ccaaaaagct tatcttaatg ctttaaaatt
    19621 agactatgaa ggcataaaac ctaatctaac tcctataaaa gctcctattt taaagcataa
    19681 tcctttcgag tttccgcttt cttgtagtcg ttttaattta ttggaaaatc aaaaaagaac
    19741 ttattattat cgttatattt taaatttagc agaacctagg gttttaagcg aggaaagcaa
    19801 agcgaaaaat caaggaaatt ttatccataa aatgcttgaa atttattata aaaattattc
    19861 aaataatgat tttgatataa aagtttttgc aaatttattg aataaagaat atcaaaaata
    19921 caatatcagt gaacttgatc ttgaagtatt taaattaaaa tttatacaat ttgctaaaaa
    19981 tgaaaaagag catttttcaa aaggctttta tgtcgcacat acagagcttg agttaaacaa
    20041 tattttaaag ctcggaacag atagtataaa acttaagggt actatagatc gtatcgatag
    20101 ttcaaaagaa ggtaatttga ttattgatta taaaagtgga aaagtgccaa gtaattctta
    20161 tcaacttgct ttttaccaag ctttatatga tgaaaatgca agcgtgggtt tttatgattt
    20221 aaatagtatg caaatattgc atcaaaaagc caaaagttta gatgagctaa gagaaagact
    20281 taaagattta gttcttatga gtaaggaaga aatagagttt gaaaatgaac aagatgagta
    20341 ttgtccttat aaactcattt ataaaaagga attaaaatga gtcaatttga gccttttttg
    20401 gcattagaag cgagtgcagg aagcggaaaa acctttgccc tgagtgtgcg ttttgtagca
    20461 cttattttaa aaggagctag gattaatgaa attttagctt tgacttttac caaaaaagct
    20521 gctaatgaaa tgcaaaaaag aattattgag acttttttaa acttagaaaa agaaaataaa
    20581 accagtgaat gcaatgaact ttgcaagctt ttaggtaaag ataaagaaga gcttatttct
    20641 ttaagagatg ctaaaaaaga agaattttta agaacagagt taaaaatcag tacttttgat
    20701 gcttttttcg gaaaaatttt gcgtgttttt gctttaaatt tgggcttaag tagtgatttt
    20761 acaatgagtg aagagaggct tgatgtaaga gagatttttt taaaacttct taaaaaagat
    20821 gaattaaaag atttggctta ttatattaat ttagttgatg agaaagaaaa tttttttaac
    20881 gagcttgaaa aattttatga gaatgcttat tttcaaaatc gtcctaaaat tctaaatcca
    20941 actaaagctt atatcaataa agcttatagt gagttaagaa gttattgttt gggtcttact
    21001 catgtaaaaa attataaaaa tttgtgtgac aattttaaaa gtgaagtttt agatttatcc
    21061 gtgtttatgc aatcaagttt tatgacaaaa tttgaaagta caaaatattt acaagattta
    21121 gaaagtacta acttgcattt tagtgcaaaa agaatggagc ttataaatgc tttaaatacc
    21181 tatgccatag agcttgaaaa ttataaaatt gctaatttaa tgaatctttt aaatcattat
    21241 agtgaagcta aaaatatatt tcataaagat aaaaatacct taaatttcca agatgtgagt
    21301 aaaaaagttt atgagttaat aaccagtgaa tttaaggata tgatttattt tcgtttagat
    21361 ggttttattt cgcatttgct tattgatgaa tttcaagata caagcgtgat ccaatatcaa
    21421 attttacgcc ctttgatcgc tgagcttgtt tcaggagaag gggttaaaaa aaatcgcact
    21481 tttttttatg taggagataa aaaacaaagt atttatcgct ttcgtaaagg aaaaaaagaa
    21541 ttatttgatt tgttaaaaca agaatttagt caaattaaaa gtgataattt aaatactaat
    21601 tatcgttcta aagagctttt ggttgatttt gttaatgaaa cttttaaaga aaaaatcaaa
    21661 gattataaag aacaatttgc cttagaaagt aaaaaaggcg gttttgtgcg tattgtggag
    21721 tctaaggaac aaaaggttaa aaaccaagcc caagaaatta aggaaaagac tttagaaact
    21781 ttatttgagc aaattaattt tttaagatct aaaaatattt cttatgatga tatttgtatt
    21841 ttgtgttgga aaaatagcga tgcggatatg gttttggatt ttttaagaga gcaaaatatt
    21901 cctgctttta ctcaaagtaa tgttttgctt gaaaataaag caagtgtaag acttgtttta
    21961 gaatatgcta aatattgtat ttttggtgat gagttttact tggtattttt aaaggaactt
    22021 ttaggttttg agccgagaaa aattaccctt gatttttcaa aaaatgctat ggaaaatgta
    22081 ctttttttaa taaaagaatt aaaacttgat ttaaatgata tcgctttaat acaatttatc
    22141 gaatatgcta aaactaagga gaatttttta aagcttttat ttgagccttg tgctttgaaa
    22201 atagtaagcg aacaaaatat gggaattagt attatgagtg tgcataaatc taagggtttg
    22261 gaatttgatc atgtgatttt acttgatagt ttatctaaaa acaattcaaa caatgaagat
    22321 atcatgcttg aatatgatat caatcaaggt tggcaactcc atattaaaga taaaattcga
    22381 gagcttacta aagagcctat ttatactctt tttaaagaaa atattacaag agcaaattat
    22441 gaagatgata ttaataaact ttatgtggct tttacaagag ctaaggaaag tttgatcatc
    22501 ataaaaagaa atgaagaaag tgtaaatgga aattatccaa gttattttaa ggggggattt
    22561 ttaaatatac attctcaaga gagaggtttt ttagaaagca aagaacaaat tttaagcgtt
    22621 aaaaaagaaa gcattcaaac tttgcaaaaa tttgaaaaaa ttaccttgca agaaattcaa
    22681 agcgaagaaa ggcttgatag taaagaacta tattttggaa atgcttttca cttttttatg
    22741 caaaatttaa aacttcctaa gggtgaaaat tttcaaatac ttactcaaag atgcaagagt
    22801 aaatttagac attttttaga tgagagtgat tttgaaaagc tttttaaaag aattgaaatt
    22861 ttacttaaaa atattcaatt tcaaaatttg attggtgatg gaaagctttt aaaagaacaa
    22921 gctttgagtt ttaatggaga aattaaacaa ttagacttgc ttgctttaaa agatgaagaa
    22981 gcttttataa ttgattataa aacaggtctt gctatgcaag ataaacataa agagcaggta
    23041 ggaacttata agatcgccat tagtgaaatt ttgcaaaaag ataaagtgcg tgcttttata
    23101 gtttattgtt tggaaaatga aattcaaatt ttggaaatat aaactttatt tttacttaaa
    23161 ttaagtaaaa attaatatta ttttttatac aatcacattt taaatttttg gcaaaggtaa
    23221 aaattatgac aaagataaca aagccaaacg aagtaaaacg agaatggatt gttttagacg
    23281 cagaaggcaa acgctttggt cgtcttttaa ctgaagtagc aacaattttg agaggtaaaa
    23341 acaagccttg ctttactcca aatgttgatt gtggtgatta tgtaattatc atcaatgctt
    23401 caaaagctgt atttacaggt gctaataaag cagaagataa gctttatcat agacattcag
    23461 gatattttgg aagtgtaaaa agtgaaaaat ttggtgattt acttgaaaaa aatcctgcaa
    23521 aattgtataa attagcagtt agaggtatgc ttcctaaaac aaatttgggc agagctatgc
    23581 ttaaaaaatt aaaaatctat gcgggtagtg agcacccaca cactgcacaa attgctaaag
    23641 aaggaaaata atcatggcaa caacatacgc aacaggtaag agaaaaactg ctatcgcaaa
    23701 ggtatgggta aaaccaggta gtggtaaaat tagtgttaat ggttttgatt taaacacttg
    23761 gcttggtgga cacgaggcga ttaagcttaa agtggttcaa cctttacttg tgactaaaca
    23821 agaaacttca atggatatta aggcaactac tttaggcggg ggctatagtg ctcaagctga
    23881 agctttaaga catggaattt caagagcttt agcagctatg gatgctgatt ttagagcctt
    23941 attaaaacct aaaggacttc ttactagaga tagtagaact gttgagcgta aaaaatatgg
    24001 acgccgcaaa gcaagaagaa gcccacaatt ctctaaacgt taatattttt ggtgggattt
    24061 tcccaccttt ctacaatttt ttataaaact catccttttt tctatcattt atgttataat
    24121 tgcaaaattt aaatttttat tttataacac aatgaaaggt tttttctatg aaaaaaatat
    24181 tcttatgttt aggtttggca agtgttttat ttggtgctga taacaatgta aaatttgaaa
    24241 tcactccaac tttaaactat aattactttg aaggtaattt agatatggat aatcgttatg
    24301 caccagggat tagacttggt tatcattttg acgatttttg gcttgatcaa ttagaatttg
    24361 ggttagagca ttattctgat gttaaatata caaatacaaa taaaactaca gatattacaa
    24421 gaacttattt gagtgctatt aaaggtattg atgtaggtga gaaattttat ttctatggtt
    24481 tagcaggtgg aggatatgag gatttttcaa atgctgctta tgataataaa agcggtggat
    24541 ttggacatta tggcgcgggt gtaaaattcc gtcttagtga ttctttggct ttaagacttg
    24601 aaactagaga tcaaattaat ttcaatcatg caaaccataa ttgggtttca actttaggta
    24661 ttagttttgg ttttggtggc aaaaaggaaa aagctgtaga agaagttgct gatactcgtg
    24721 caactccaca agcaaaatgt cctgttgaac caagagaagg tgctttgtta gatgaaaatg
    24781 gttgcgaaaa aactatttct ttggaaggtc attttggttt tgataaaact actataaatc
    24841 caacttttca agaaaaaatc aaagaaattg caaaagtttt agatgaaaat gaaagatatg
    24901 atactattct tgaaggacat acagataata tcggttcaag agcttataat caaaagcttt
    24961 ctgaaagacg tgctaaaagt gttgctaatg aacttgaaaa atatggtgta gaaaaaagtc
    25021 gcatcaaaac agtaggttat ggtcaagata atcctcgctc aagcaatgac actaaagaag
    25081 gtagagcgga taatagaaga gtggatgcta aatttatttt aagataatga ataaaactat
    25141 tttatttgat ttagatggca ctttaattga ttctactgat gctattttaa attctttcca
    25201 aggagctttt aaagcccttg gattaacttc taaaaataat gaagaaatca aaaatctcat
    25261 aggttatcct ttagagcaaa tgtttagaat gctttatcca gataaagtaa atttaagtaa
    25321 agaatttgta ttagcttatc gtgaaattta tgcacaaatt tatttagaac aaaccactct
    25381 tttgcctaaa gcaaaagaag cattagaact tggaagcgaa attgcagatc ttggtatagt
    25441 tacaacaaaa ggaggtaaat ttactccgat tttacttgat tatttgggag ttaaaaaatt
    25501 ctttaaaact ttaattactc ttgaagatgt cacaaatcca aagccaagtt ccgaacctat
    25561 aattttagcc ttaaaaagac tcaataaaac tcaagaaaat gcctatatga taggcgatac
    25621 aatattagat attcaagctg caatttctgc taatatcact cctttggcct taacttgtgg
    25681 ctatggcaat gaaaatgaat taaaagctca ttctatagta tttttaaatg catatgaggc
    25741 tgttaattat atagctagat taaactaatt tcaagttttc gttaaacgcc ttttaagaga
    25801 atttatagta aattgatagc taaaaaatta taaaaattat caatataaag gaaggtctca
    25861 atgggtaaaa ttatgaaaac tatggacgga aatgaggctg ctgcatacgc tgcgtatgct
    25921 tttactgaag ttgctggaat ttatcctatt acacctagtt ctcctatggc tgattatacc
    25981 gatatgtggg cagctgcagg aaaaaaaaat ctttttggag ttcctgtaaa aatcgtagaa
    26041 atgcaaagtg aagcaggagc tgcaggtagt gtgcatggat ctttacaagc tggggctttg
    26101 actacaactt atacggcttc tcaaggatta ctccttaaaa ttccaaatat gtataaaata
    26161 gcaggtcaat tactcccctg tgtaatccat gtagcagcgc gttctttggc tgctcaagct
    26221 ttgtctatct ttggtgatca tcaagatatt tatgcagcaa gacaaattgg ttttgctatg
    26281 ctttgttcgc attctgtgca agaaaccatg gacttagctg gtgtagcaca tttagctgca
    26341 attaagggaa gagtgccatt tttacatttt tttgatggtt ttagaacaag ccatgaaatt
    26401 caaaaagttg aagtaatgga ttatgcgcat tttgatagat tattagatag agaagctttg
    26461 cttgaattta gaaataatgc tttaaatcca gaaaatccaa aaacacgtgg aacagcacaa
    26521 aatgatgata tttattttca aactagagaa gtaagcaatc gtttttacga tgctttacct
    26581 gatgttgtta atgaatatat gcaagaaatt tcaaaaatta caggtagaga atacaaacca
    26641 tttacttatt atggtcacaa agagccagag tgtgtgattg ttgctatggg ttctgtaact
    26701 caagcacttg aagaagtggt ggactatctt aatgccaagg gtgaaaaggt agggatttta
    26761 aaagtttatc tttatcgccc atttagttta aaatatttct ttgatgttat gccaaaatca
    26821 gtgaaaaaaa ttgcggtttt agatagaacc aaagaaccag gaagtcttgg agaaccactt
    26881 tatcttgatg taaaatcagc tttctatgga agagaaaatg ctcctgttat agtgggtgga
    26941 agatacggac tttcttcaaa ggatgttgat cctgctcaaa tgatagcagt atttgaaaat
    27001 cttaaacttg ataatccaaa agatggcttt actgtaggta taattgatga tgtaactcat
    27061 acttcactga gtactggaga gaaaatttca cttggagatg aaagtacgat cgaatgttta
    27121 ttttacggac ttggtgctga tggaactgtg ggcgcaaata aaaactcgat taaaatcatc
    27181 ggagataaaa cggattttta cgctcaagct tattttgctt atgattctaa aaaatcaggg
    27241 ggttatacaa gaagccattt aagattttct aaaaaaccta tccgttcaac ttatcttgtt
    27301 tcaactccgc attttatcgc ttgttcggta gcggcttatt tggaaattta tgatgtttta
    27361 gcaggaattc gcaaaggagg aactttcctt ttaaatagta tttggaatgc tgaagaaacc
    27421 ataagacaac ttccagatgc agtaaagaaa actttagctg aaaaagaagt aaatttttat
    27481 atcatcaatg caaccaaact agctcgtgat ataggtttgg gaaatcgtac aaataccatt
    27541 atgcaatcag cctttttcaa acttgcaaaa atcattcctt atgaagacgc acaaaaatac
    27601 atgaaagagc ttgcgtataa atcttatagt aaaaaaggcg atgctattgt agaaatgaat
    27661 tacaaggcta ttgatgtggg tgctgatgga cttgtaaaag ttgaagtgga tccaaattgg
    27721 aaaaatttag agcttaaaga aaaagaacaa accaatgcct ataaaggtac tgaatttgtt
    27781 gaaaaaatcg taaaacctat gaatgcggct aagggtgatg atttacctgt ttcagccttt
    27841 ttaggttatg aagatggaag ttttgaacac ggcacaaccg aatacgaaaa acgcggtgtt
    27901 ggggttatgg taccaagatg gatagaggca aattgtattc aatgcaatca atgtgcttca
    27961 gtttgtccgc atgctgttat caggccattt ttgattaatg atgaagaaat ggcaaatgca
    28021 cctcgcggtg taaaagatca tgctttagaa gctaaaggaa ccaaaggaga aaaattaagc
    28081 tttaaaattc aagtttctcc acttgattgt acaggctgtg agctttgtgt tcatgagtgt
    28141 cctactaaag aaaaatcttt ggttatggta ccacttcaag aagagatgga ttttggtgag
    28201 caagaaaatg cggattattt atttaaagaa attacttata aagatgatat tttaaataaa
    28261 gaaaccacaa aaggagcgca atttgcccaa cctttatttg aattccatgg ggcatgtcct
    28321 ggatgtgggg aaactcctta tattacttta attacaagat tgttcggtga aagaatgatt
    28381 gtggctaatg ctacaggttg tagttctatt tatgggggtt cagctccatc aactccttat
    28441 agaaaaagtg tgaaaaatgg acacggtcct gcttggggaa attcactttt tgaagacaat
    28501 gctgagtttg gtttgggtat gaaaattgca actgaaaata caagacaccg cattgaacat
    28561 atcatgaatg aaagtatgca agaagttcca aatgctttat cagctctttt taaagattgg
    28621 attgcaaata aagacaatgg tgctatgtct gtggaaatta aagataaaat gatccctatt
    28681 ttagagcaaa ataaaaatat taaagccgta caagatatat tagagcttaa acagtattta
    28741 agtaaaaaat ctcactggat ttttggtggt gatggttggg cttatgatat aggctatggc
    28801 ggacttgatc atgttttagc aagtggagaa aatgtaaata ttttagtgct tgatacagaa
    28861 gtttattcta atacaggcgg tcaaagttca aaatcttcta gaacaggagc tgtagcacag
    28921 tttgcagcag caggcaaacc tatacagaaa aaagatctag gtcaaattgc tatgacttat
    28981 ggttatattt ttgtagcaca agtaaattca acggcaaatt atactcatct tatcaaagct
    29041 atcactgcag ctgaggccta tgatggacca tctttggtga tttgttattc tccttgtata
    29101 gctcatggta ttaaaggtgg gctgggttac tcaggagagc aaggtgagct tgctacaaaa
    29161 tgtggttatt ggccacttta tacctttgat cctcgtttag aagagcaagg aaaaaatcct
    29221 ttaactctaa caggaaaaga acctgattgg gatttatatg agcaattttt gatgaatgaa
    29281 gtgcgttata attcacttaa aaaagcaaat cctgaacacg ctgctgagct ttttgaacgc
    29341 aataaaaaag acgctcaacg tcgctataga cagcttaagc gtatcgctat ggctgattat
    29401 agcaatgagg tcgaaagctg ataaaatata tttttagtgc tacattgtgt tttagcactt
    29461 tgtttgcaca agataatttt gaagagtatt ttaaacttat agataaagaa aatcgtataa
    29521 attttaatac tcttcaaaac ccatttgtga atcctacttt tgaaaaatta agacatatta
    29581 aaattactgc aattatgctt gataaagtaa aaatttatga tcgatggtat aaaaaaggtg
    29641 atatgattga tgatgctata atatatgaaa taaatactaa agagattaaa ttccaatatg
    29701 ataatttaga aattgcaatc caaataaata aaaatgataa gattaatatt aattaacatt
    29761 cttttttgcc attatcttta tgctttagat tgtcaaaagc gtctttttga tatcagtatt
    29821 aatgaaaaat taagcataca agaaagtctt gatgagcttg caaaatattg ttcttttagt
    29881 attattgtta aagataaaat tgccaaagaa aaattagaaa tattgcaaaa ctctgtcaat
    29941 attcatcaaa tgagtttaga cgaaattttt aattttttta tcaaagagca tgatcttagc
    30001 tatgattttg atggtaaaat tttaagaatt tcaggcatta atacgaagat ttttaagata
    30061 agttatatca cttctatcag agaaggacaa agcataacta aagcgtctgt agacgctaaa
    30121 ccaaggcaaa gtgaatatag cggtagtttt gatgacgcag aagacaatat gattaaaagt
    30181 atggaaaaat ttgatttttg gcaaaatata gaaaaagaga ttattgtatt attaaaaaat
    30241 tctcatgaag attatgaggc taaaattccc attataaatc ccaatgcagg tcttattata
    30301 gtaactggaa caaattctca gttaaaaagt gtgaaaaatt atttgcaaaa actagaaaat
    30361 cgtcttaaaa aacaagttat tatcgatgtt agcatacttg ctgtgagttt aaatgaaaac
    30421 cattctagtg ggattaattg gcaaaatttt aatataggtt taaattcgca agtaaataat
    30481 gaaaattctt ttattcagtt tcaaaatggg caaggttttg ttaagaattt gggtttaagg
    30541 gcgaatttaa attttgattc tattattaac tttctttctc aaaatggaaa aactagcgtg
    30601 ctttctaatc caaagcttat ggctttaaat aaccaacaag ccattatttc tgtaggtgat
    30661 actataaatt atcaagttaa agaaagttct aaaggcactg aaaatgggac tactgttagt
    30721 gaaagttata acaattattc tatttttgta ggcattttac tcaatatctt gcctgaaatt
    30781 tctgatgatg gaaaaataat gctcaggatt aatccaagct taagtgattt taagtatcca
    30841 gaagataata aacgacaaaa agaaccaaga actattgctc ctgataccat acaaaaaaag
    30901 ctttctagtg ttgtgcaagt agagaataat caaactttaa ttttaggtgg attgatttct
    30961 cacgataaat ctaatgagaa aaattctatc aattttctat caaaaattcc aatcctaggt
    31021 tctttgttta aaggagaagt tttaaattct aaagcaaccg aaattgtttt tattatcact
    31081 ccaagtatag tagatagtgt aaatgctcca agtcttaaag atctaggatt taagcattat
    31141 gagtaaaatt attccattta gagaagaaat ttttcatcaa atcaatcaaa ttttagaaag
    31201 ccaaaaagct tttatttttt tatggggaaa aagtggtagt ggtaaaagtg tattgttgca
    31261 aagattggca aaaaaatata atgttgattt tattaatgaa aattttaaag atcagagttt
    31321 cttaaaagaa aaaattgagt ttttgatttc acaaggtcag agtttaatca ttcttgatga
    31381 agtgggaatg tatgattatg caatgctaga aagcatcagg atttatagtg attctataag
    31441 ttttgtttta agttctcata aaaagttaaa tatacttaaa aaagagcatt ttaaaagtcg
    31501 tttaagtgct tgttttaaat tgaaaaatat tagtctttta gaacttgatg attatattaa
    31561 attgaaattc ggaatgaatt tttcaaataa atgtcttaag tttttacaaa aaatttctca
    31621 a
//
LOCUS       DAPIWU010000007        30853 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.007, whole genome shotgun sequence.
ACCESSION   DAPIWU010000007 DAPIWU010000000
VERSION     DAPIWU010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30853
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.007"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..915)
                     /locus_tag="RJ285_000250"
     CDS             complement(<1..915)
                     /locus_tag="RJ285_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HDV7383068.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLAIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEET
                     LEEGGTPGILQLIRASLAFKIKDSIGVKN"
     gene            951..1829
                     /locus_tag="RJ285_000251"
     CDS             951..1829
                     /locus_tag="RJ285_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7383069.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNHFTRFFFYFLRPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     QDENLCFVGEVKFKNKKICKNILNLLKSKAKSLNLAPNYYIIISKNGFSKEFDKICEQ
                     NLLLLDLNDFKILLEE"
     gene            1833..2852
                     /gene="flgS"
                     /locus_tag="RJ285_000252"
     CDS             1833..2852
                     /gene="flgS"
                     /locus_tag="RJ285_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HDV7383070.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLNIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASCDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            2973..4263
                     /locus_tag="RJ285_000253"
                     /pseudo
     CDS             2973..4263
                     /locus_tag="RJ285_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4321..5748)
                     /locus_tag="RJ285_000254"
     CDS             complement(4321..5748)
                     /locus_tag="RJ285_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDV7383071.1"
                     /translation="MLVNTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFAILALRFSFLFNLFSLPFALFSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEEDKLINLYDDKLSLIHSSLEGLEFKIDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(5749..6468)
                     /locus_tag="RJ285_000255"
     CDS             complement(5749..6468)
                     /locus_tag="RJ285_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDV7383072.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGANKELMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPMMYETFKRVVDEDFSEIFAKQKAKSLVFWGESDESTPLYCGEKMHQFLKNSTFYPL
                     EGNHFFFLKHSAFIAQKIKEI"
     gene            complement(6470..6685)
                     /locus_tag="RJ285_000256"
     CDS             complement(6470..6685)
                     /locus_tag="RJ285_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HDV7383073.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            complement(6745..7785)
                     /locus_tag="RJ285_000257"
     CDS             complement(6745..7785)
                     /locus_tag="RJ285_000257"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDV7383074.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKEKLN
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIKINYN
                     FLHSINGQKGKL"
     gene            complement(7795..8346)
                     /gene="ruvA"
                     /locus_tag="RJ285_000258"
     CDS             complement(7795..8346)
                     /gene="ruvA"
                     /locus_tag="RJ285_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDV7383075.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATSTSELIKEALKKLG"
     gene            complement(8322..10181)
                     /locus_tag="RJ285_000259"
     CDS             complement(8322..10181)
                     /locus_tag="RJ285_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDV7383076.1"
                     /translation="MALDEKIIAYTENPARELLSVTSRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIMAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            10285..11736
                     /gene="murJ"
                     /locus_tag="RJ285_000260"
     CDS             10285..11736
                     /gene="murJ"
                     /locus_tag="RJ285_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDV7383077.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKF
                     KKAKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIVFTILLILIKPYILSFFIGIFTSFKGVF"
     gene            11736..13124
                     /locus_tag="RJ285_000261"
     CDS             11736..13124
                     /locus_tag="RJ285_000261"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDV7383078.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLSEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNISKALALLDDFISNANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLD
                     TPNGTIWEKINA"
     gene            13117..14859
                     /locus_tag="RJ285_000262"
     CDS             13117..14859
                     /locus_tag="RJ285_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7383079.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            14891..15949
                     /locus_tag="RJ285_000263"
     CDS             14891..15949
                     /locus_tag="RJ285_000263"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDV7383080.1"
                     /translation="MAYEMIKPLLFKLNPEYTHALVECSLRALSASFPGALSFLAHKY
                     IVDNESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DIKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYDRIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            15946..17196
                     /locus_tag="RJ285_000264"
     CDS             15946..17196
                     /locus_tag="RJ285_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDV7383081.1"
                     /translation="MIAYEKIQLKNKLEIYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKQHFEKIKNTKTM
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            17189..18085
                     /locus_tag="RJ285_000265"
     CDS             17189..18085
                     /locus_tag="RJ285_000265"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDV7383082.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYIAGLIESLEFRLPLC
                     PLSKENFAKIEEVMKKYKIKGF"
     gene            18085..18864
                     /locus_tag="RJ285_000266"
     CDS             18085..18864
                     /locus_tag="RJ285_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HDV7383083.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFINYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(18905..19210)
                     /locus_tag="RJ285_000267"
     CDS             complement(18905..19210)
                     /locus_tag="RJ285_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383084.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(19222..19818)
                     /locus_tag="RJ285_000268"
     CDS             complement(19222..19818)
                     /locus_tag="RJ285_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7383085.1"
                     /translation="MQIIKQACGAYETNCYILFGEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDAFMLHDDFNQGYDSSDADFLVDNED
                     ILNICGVDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            19892..20632
                     /locus_tag="RJ285_000269"
     CDS             19892..20632
                     /locus_tag="RJ285_000269"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HDV7383086.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKVNLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALENNDEKLLKT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            20636..21562
                     /locus_tag="RJ285_000270"
     CDS             20636..21562
                     /locus_tag="RJ285_000270"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDV7383087.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFVLFPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLEGKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAI
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            21559..22971
                     /locus_tag="RJ285_000271"
     CDS             21559..22971
                     /locus_tag="RJ285_000271"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDV7383088.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIRALNYELCVAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNVNNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEVKNIKKEILDWMQK"
     gene            22968..23687
                     /gene="kdsB"
                     /locus_tag="RJ285_000272"
     CDS             22968..23687
                     /gene="kdsB"
                     /locus_tag="RJ285_000272"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDV7383089.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYEKALKIYLEK"
     gene            23773..25087
                     /locus_tag="RJ285_000273"
                     /pseudo
     CDS             23773..25087
                     /locus_tag="RJ285_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517240.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            25182..25952
                     /locus_tag="RJ285_000274"
     CDS             25182..25952
                     /locus_tag="RJ285_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDV7383090.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGFFDSLGEKYLKDVKDTFKKNNLEFFF"
     gene            complement(25968..26702)
                     /gene="fliP"
                     /locus_tag="RJ285_000275"
     CDS             complement(25968..26702)
                     /gene="fliP"
                     /locus_tag="RJ285_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HDV7383091.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            26845..28134
                     /gene="glmU"
                     /locus_tag="RJ285_000276"
     CDS             26845..28134
                     /gene="glmU"
                     /locus_tag="RJ285_000276"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDV7383092.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAEHKMIKDYYYKKFQK"
     gene            28131..29285
                     /gene="coaBC"
                     /locus_tag="RJ285_000277"
     CDS             28131..29285
                     /gene="coaBC"
                     /locus_tag="RJ285_000277"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDV7383093.1"
                     /translation="MKTVLLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKSLIIAPAANTNMFHHFSTQNSLKMLKENKALIIEPICKVLACKDEGVGAL
                     AEVKNIFNIVKRELLKEKFWCDKSVVITGGGTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            29282..29899
                     /locus_tag="RJ285_000278"
     CDS             29282..29899
                     /locus_tag="RJ285_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383094.1"
                     /translation="MSMINSTLPIQMKVLAKSGYRHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFNFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            29903..30571
                     /gene="uppS"
                     /locus_tag="RJ285_000279"
     CDS             29903..30571
                     /gene="uppS"
                     /locus_tag="RJ285_000279"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDV7383095.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            30568..>30853
                     /locus_tag="RJ285_000280"
     CDS             30568..>30853
                     /locus_tag="RJ285_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDV7383096.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKLFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLSISLLINEILGAILLILVYSLSQNFYD"
BASE COUNT        10917 a         3926 c         5252 g        10758 t
ORIGIN      
        1 atttttaacc cctatagaat ctttgatttt aaaagctaag ctagcgcgaa tgagttgtaa
       61 aattccaggt gttcctcctt cttctaaagt ttcttcattg caaaggtagc attgtgaagt
      121 gcgagaaaca tagcccacag ttccacctgc tgcaaagcta ggcttgtttc cacaaagatc
      181 ttttttgatg gctaaaagtc cagaaccgcc aataccgccg attaatttat gagaacttat
      241 aaacaacgca tcatagtatt gacaagatat gtttttatag ggaatgaaac tagatgcatc
      301 aaaagcaact atccctttaa atttacgaac catttcagaa atgcgtttgt aatcacttaa
      361 tatcccagta acatttgaag ctaaagaaaa gctagcgatt atttttcttt ttttgttttt
      421 ttgtaaagtt ttttctagaa aatcaaaatc aatttctcca tttttatcca agggaattct
      481 aatacattcg cacaagcctt ctcgaaatga aagttcatta gaatgatgct cataaggccc
      541 tacgatagct aaaggtaaag tatttttatc aatttgcgta aaatatcttt cttttacaag
      601 agggggaatg taaatgccga tcaattcttg aaatttttta atagcactgc ttgatcctgt
      661 tccgcaggct ataagggcaa aattttcatc caatgataaa ctttttttta tatcttttct
      721 tgcttgttcg taaatttgtt gagttttaaa agaatttaaa gagctatcag aatgtgtgtt
      781 tgcataggtt ggaagaattt ttgaaatttc tttttctacg cattttagag ctaaagcact
      841 tgctgtgaag tcaaaatgca aaataccttt ttttaagatc aattcttttt ttaaatctga
      901 aatttgcaaa tacaatcctt ataaaaattt gctaaaatta tactataaaa atgctttata
      961 aaaggaaaaa tataaaattt aagaactttg tagatttgca taagaatttg tctttaagta
     1021 agctttttga tttttatagt gtgtttgaag gttttgaaaa attaaacatt ttaaattttg
     1081 aagacgatgt atttacaaat atagagcgaa ttttgcttga tgattatcta aaaattaaaa
     1141 gttatttcgc cttggatgaa acaagttctt acgctcttac tttgctagct aaaaacaatc
     1201 gcaagcgttt ttctatcaat agaaaaattc agcattttaa agctttatct acacttaaat
     1261 atcttttaga aacaggtata ataaaacttg agtatagtaa ggaagctaaa aaaataaaag
     1321 ataaaagaca aaaaatcaaa aaagaactaa gatcttatgt tgtccaagat aagattatat
     1381 ttagcaacca ttttactcgt ttcttttttt attttttaag gcccaatgaa aagcttattt
     1441 tgcaaaatcg ttataaagaa gttttagaat gcattaaaga aaaatttgaa ctttatcaaa
     1501 gtttttgttt tgaacaactt tctagagaat tgcttgagaa aaaattcaat atcaatggag
     1561 tgcaaagtta ctgggataag aatttagaac ttgatcttta ttatcaagat gaaaatttgt
     1621 gttttgtcgg agaagttaaa tttaaaaata aaaaaatttg taaaaatatt ttaaatcttt
     1681 taaaatcaaa agcaaagtct ttaaatttgg ctccaaatta ttacattata atctcaaaaa
     1741 atggttttag caaggaattt gataaaatat gcgaacagaa tttgctttta cttgatttga
     1801 atgattttaa gattttatta gaggaatgat aaatgaatga aagtatttta aaaagtttag
     1861 actcaaatga aaaagaaacc ctacaaaaag gcttagaaag tcttatagaa caaacttatg
     1921 taatagaaaa tgaatacaaa actttaaatg aaaactataa ctccttacgc gcaatggttg
     1981 atgagattat agaggtgttg cctagtgcgc tttggatttt agataaagaa aaaaatatta
     2041 ttttacaaaa tcaagaagcc ttgaaaaatc caaaattact taacatcatt agtcttgata
     2101 aaattcgtga tgagcttgaa tttgaaggta ggttttatgc ggtaaaaatc atagcgcata
     2161 atgaaaaaac tatagtttca gctacagata ttagcgatga aaaacgcaat gaaaggcttg
     2221 caagcatggg tagtgtagcg gctcatttgg cacatgagat aagaaatcct attggatcta
     2281 tatctttgct tgcttcaacc ctttttgctc gtagtgagct taaaaataag catatagttc
     2341 ttgaaatcca aaaggctatt gctagagtag agcgtattgt aaattcaact ttacttttta
     2401 ctaagggtgt gcacatcaat gctttaaatt ttaatctttt agagttaaaa gaagagtgtg
     2461 aaagtgccat taactcttat aatttcactt ctcaaataga ctttgaaata tcttttttgg
     2521 ataagcagat ttgtgctgat aaagctcttc ttggtttggt tttgcaaaat ttgatttata
     2581 atgctattga tgcgatagaa gaaagcgaat gtgaaaagcc tatgattaaa attttagcaa
     2641 gttgtgataa tgaaaaaata tgcatcagag tgtatgataa tggttgtgaa ataaaagatg
     2701 agaaattggt ttttgaagct tttaaaacaa caaaacttaa gggcaatggg cttggcttgt
     2761 ctctttctaa agaaatcata aacgctcata agggagagtt aagttttcaa agcgatccta
     2821 agaattttta ttttacctta cctttggtgt gataaatatt ttcttttcac cctaaaacgg
     2881 aacagatttt gctcatatta tttataaaat atatttagat tgaaggcaga aaaatctaaa
     2941 tcaaggaatt aatatgagta tctttagcat caatgataac tcaaactatg gttctatact
     3001 ttcacaaagt aaagctaata aagaaagtaa agaaaattca aaaataagtt ttgctaatgc
     3061 ttttttaaaa caaaatgcta gtaagttaaa tgaaatagaa aatgaaaatt cacaaacttt
     3121 aataagaagt gaagcattaa attctactaa tatatcaaat actagtaata acactaattt
     3181 tagtataagt agtaaaacaa gttctcctaa ttatgatata tcaagtgaat ttaaaaactc
     3241 tatttatact ctaaaatata aacaagcaga tacaagcaat attgtatctt tagcttatgg
     3301 ttatggagta gatgctaatg gctatatggg aagtgtttta acaaagctgc aggattgcct
     3361 gaagatttta agatacataa atctactttg gatgagatta aaaaagctgc tgaaaatgaa
     3421 ccttatattg cagatatgaa acaatatttt ggtgtaagcg agtattatac taatatcgat
     3481 atggctgaaa ccataaaaca atattataat caatttaatc aaattgttaa tcatactttt
     3541 aatgatacca ataaaacaag tttcactgaa acagatataa attctatgcc taagggaatt
     3601 agtgaattat catctgataa aactataggt attatgccga aaaattatga taagctaaca
     3661 ataacaaact attataatac acaagagcaa tataatgaag cagaacaatt aggaatgttt
     3721 gggcatatta atataggctt acaaccatta aatttcactc cgcaaagtat gcaaactcaa
     3781 aatttagata aagacactgc aatagatact tttaatcctg atatgtcagt ttatccacaa
     3841 aatgaagatg gaagttactc taaagaggct ttgtttatga gttttttaaa atcaacgggt
     3901 gtatcgccaa gagaaggtag tgcaacatta aatcctatag ctaagtctta tgctgaagct
     3961 atggccaaag aaagctttga tggatcatta acttccttag atgacatcat gacaggcaaa
     4021 gttgattttg caagtttatt aaaaggttat gcacaagatg gctggcttga tgcagatata
     4081 tatgcaatgg aaaaaggggt tgcttggcaa aatacaagta taggttatgg tggagcttgg
     4141 tttgatagag aatttaatca agcaaaagct aatggctgga aagcaagtaa tgaaagtata
     4201 aattcttttg taaataatat aatggataga cttaataatc ttatagggca gactagggtt
     4261 taaagaagta tttgcacgaa gtcaaattaa aaatgatgac atttgcaaat acttagcaaa
     4321 tcacataaag ctaggtgcat cgtttgaaaa gagtattaaa tctccgtgtt ttgtttcttt
     4381 agctagagtt tgaactagct gactcttttc tttaagtata atggttttta tttttaactc
     4441 ttttttgaaa atttcagcat tgatttgtgc actaatgata gcaagatcaa aacactcatt
     4501 gatgatttta gcaagtttta tattttcttc ttcgcttact tccactatac caggacttac
     4561 taaaactttg cgtcctttat agcttttaca aagtttatag cttgtgctca tacctttaaa
     4621 atttccatta aaaccatcat ctatgataaa tttaggctct cttgaaagca cttgcaagcg
     4681 atgttctacg gagtttatat ttaaaacttg cttttgaatt ttttctagtt ttatgccaag
     4741 ataatgagca caaagtatac aaacacaaag attttgcgca ttaaaatccc ctaaaatttg
     4801 acttttaaaa tcataggatt tattttctat atcgatttta aattctaaac cttcaagact
     4861 tgaatgaata agacttaatt tatcatcata aaggttgatg agcttatctt cttctttttg
     4921 ggtgctagag tgtaaaaaag ccttttctag tcttttggaa tttaaggctt caagtttggt
     4981 tgagcggata ttttcaacac ttttaaaata ctctaaatgt gcattgccta tctctcctac
     5041 tatgctgatg tgaggttgta aaaaacgcgt gatttcatca atatcgcctt taagtctagc
     5101 acctgcttca gctatgtaaa tttgagtatc ttggcttaaa ttggtgttga tatcagcaac
     5161 tatgcctagc aaggtattga cagagcgtgg tgttttgtag cttttaaagt catcttttaa
     5221 aagttcgtat aaaaaatttt taatacttgt ttttccaaaa cttgcggtaa tgagtatgat
     5281 ttttaaattt tcattggctc ttagtttggc tttggcttgt tttttataat ataaatttgt
     5341 aaaaaactca taaattttaa gactaaataa agcaaaagga aggctaaaaa gattaaaaag
     5401 aaaagaaaaa cgcaaagcaa ggatagcaaa aatagcatta taaacaaaaa caaaaacaaa
     5461 aaaccattta accttacttg taaaaacaag ctttttatct atacctttgt tccaaaaata
     5521 caaaatcgga gtatggatca atgcaaaata tgccaaagag tataaaggaa aagctaagaa
     5581 taaaaaataa ggaataaata aaaaatacaa atgccacaaa ggtttatgat aatgaaaaaa
     5641 cacgcgttta aatttataag aataccattg taaagcactc ataagataaa aagctataca
     5701 aaaattaaaa aataaagaat taataaaata aagagtattg acaagcattt aaatttcctt
     5761 aattttttga gctatgaaag cagaatgttt taaaaagaaa aaatgatttc cctctaaagg
     5821 ataaaaagtg ctatttttta aaaattgatg cattttttca ccacaataca aaggcgtaga
     5881 ttcatcgctt tccccccaaa aaaccaagct tttagccttt tgcttggcaa aaatttcact
     5941 aaaatcctca tcaacaaccc ttttaaaggt ttcatacatc ataggactaa gatttgctcc
     6001 atctttacta gcaaaatagc gataaaattt tcccaaacca aagagtttta aaattttaaa
     6061 aatacggatt ttaaaacgca cttttagaga ttttttagcc aaaattcctg cacttgaaag
     6121 taagattaga gtgtcttttt cttttgcgag tagggtactt acttttccgc caaaagaatg
     6181 ccccatgaaa aaacagacat tgagtttttt ttgttttaaa aaaagttctg tgatattggc
     6241 gtaatcttga gtgtttaaaa tttcttccac gcttgaattt ccaaaacccg ccaaatccat
     6301 ataaatttga caaaaatctt ttaaaaaagg acaaaaactt tgcttcataa gttctttatt
     6361 agctccccag ccgtgtaaga taagtatttg cggtaaggaa agatcgccta aaatttcata
     6421 agaaatttga taagttttgt ttttataaga aagttgagtt tgagccattt taagcctttt
     6481 gatttttgta gatattttct aaaagttgca tggcattttg taagcgttca aattctttca
     6541 tactaagcat tacagcttca aatttgttat tttttaaaat aactattttt ccactttcac
     6601 tttttttgag tttttccata atggggctaa aatttcttac cacctcggtg gcagtgtaaa
     6661 tttcatcttg tttaaaagag agcatttttc ttcctaaaat acgctaaatt ttatgtataa
     6721 tttagcgtat tttgacttaa aagcttataa ttttcctttt tgtccgttga tggagtgaag
     6781 gaagttgtag ttgattttta tcattttttc aagtgaaatt tgatcagcta aagcgtttaa
     6841 agtggtatta aaatctttaa aaagataatt agccaaagaa ccaggatttg ggttgatttc
     6901 atttaaatat atttcattat ccagtataaa aaaatcgcag cgtattaaag cacctttaaa
     6961 caaaggattg tagatctttt taaaactgtc tttgagtttt tcttttaatt cttcgcttaa
     7021 atccgcttct ataagctcat tgtgtcctga aaagctaaga tatttttgtt caaagtctaa
     7081 aaattctttt ttctttggct cttctatgat ggaaaaaaca aactcatcat tgatcataca
     7141 tcctgcaaga ttgtattctt tgatattgtt tttaaattct tccactacaa gatcattatc
     7201 aaattcaaaa cctacatctt tggcatattc taaatctttt tcatctttta ctatgctaat
     7261 gcctatacta cttccaagtc ttgcaggttt gataatgcaa ggaaaattaa gcttttcttt
     7321 agagttttga ttttttctta gcatggtata atcaagtgtt tttactccaa cgcttttggc
     7381 ataaagtttg gtaagttctt tgttgaaaga taatacacta gcttcaagcc taggtcctat
     7441 aaatttaata gaataaaact caaataaagc cgcaattttt ccatcttctc catctctacc
     7501 atggataaga ttgatcacgc attcgcactc tagtttattt tcttttaaaa agcctttact
     7561 aaaaaaacct ccttgtttga tgaaaagttc tttttctttt ttataagctt tggtgctaaa
     7621 agttttagaa ttcatttttt cacttgggat atgataaaat cttctttctt catcacaaaa
     7681 aataaattct aaattttgat tgataacttt tttaagtact acagcactta ctatactgat
     7741 ctcatgttca taagaatttc cgccaaaaag tattgcaaat ttcattttat tcctttatcc
     7801 tagtttttta agagcttctt tgatgagttc gcttgtgctt gttgcttgag cacttgctaa
     7861 aacacttatg attttttctt gtttaaagcc tagagtaaga agtgcggcta aggcttcgct
     7921 tttatcatcg cttacatttt caagtttggt ttttgtgtca gaaagttcta ctataatgcg
     7981 ttttgcactt tttggaccta tgccaggtac ttttttaagc acgctttcat cgcccaaact
     8041 taacgctttg taaaaagaat ttacatcaag actagagcat accgccatag cagtatttgc
     8101 acccactcca ttgactttta aaagcatttc aaacattttt tgttcatctt tatccaaaaa
     8161 gccataaaat ttattagaat cttctttgat gatttgagtg ataaaaaact catgcttttc
     8221 ttgagtttga attttagcag aacaaaaaag cgaaataaat atcccatagc ttaaaccact
     8281 agcgcattta acaatgataa aagtaggttc tttttttgtg attattcctt cgatgccgac
     8341 aaccatgcta tatccttttc ttcataatct aattttttat gtatttctat actttcttgg
     8401 ttgttttgta tgactttttt aatgcctata aatttagcac tttcattaac aaatgaagag
     8461 taaaaaatat cttctttagg ctctagaagt gaaaatttga tttcattcat atcagtccat
     8521 ttgccacttt tatttataaa agttgcttca aaaagcattt tttgcaaatt gattaattct
     8581 aattgtaaag attttttgcg ttcaagaagt tctttttctt cattttgtag tttatttaat
     8641 tcaagatttt gcaaagagaa atcttttagg gctttttcgt attgtacagg aacattttga
     8701 ccttgatttt taagttctgt tatctttttt tcaacgctta aaattccatt tttgcttgat
     8761 aaaatgtatt gtcttatttt atttatttta tgatttaact tagaaatttg ctctcctaaa
     8821 atcgcaaatt cttcatcata atttttatca agagttttaa ttttagcatg aaatttattg
     8881 ttatccccgt taatgcgttc tattgtggtg ttttcaaaaa acacacaaga attattactt
     8941 tctaaatttt ctatatagat tttatcagct tgtatatttc cacctaagct ttttttaatt
     9001 ctcacttctt tagctttgat tgttccacct tcgagcaaat ctatatttaa aatttcggct
     9061 tctgcaaatc ctctatgagt ttttatatag gcttgtttgg cttgaatttt ggctttagag
     9121 tgtgtagtgc cttcaatttt cattttagtg gcattaagtt gagtgttgct tcctacgctt
     9181 ccgactacat ttaattcttc acattctatc ccaacgccag aatttacagc atcttttact
     9241 tctgaaagaa attttatatt gattttgaca tttttgtcta gtccagctct tataatccct
     9301 atatttttaa aatctactcc attaaaatct agttcattgg caatatcaaa tttttcacca
     9361 tcttgtacta cataaccttt ttttaaagct atatattctg tgtatccatc ttgctctact
     9421 tgtttaaaag ctgaagaaca agaaaattta actttatttt catttgcggc taaaactttt
     9481 aaggtgtgta aatttaagtc ttttccttct ttaccttgtt taaatttggc gtgttttaaa
     9541 acaacttcat tttcatcaac aacaataata cctgagcgtt tttcatcgat agtgtagttt
     9601 ttggtttttt ctttataagt caagatcagg gattcatctt gactttctat aggatcaata
     9661 ccttgtgcaa cggtgatttg tatagtttta tttaaaggag tgtttttatg ttggttgcaa
     9721 aaagacatta aatttttctt aaaatcaaaa atgcggatac ctattaaaaa tttaagtttc
     9781 aacatctttt tataaatatt ttgcaaaagt tctagtgcta gtttttcatg aaagtctaaa
     9841 tttgtaaaat caatttgagc cattattttg gttaaatttt tattcgcaac tagtttgact
     9901 gcttgagatg ctttgctttg gtttatacca tggaaaattt ctattttgta ttcttgcttg
     9961 atttgaagat cgttttttaa aaaaatttca tctttatcaa aaagagttaa ttctttttca
    10021 gagatttttt cccattctaa atctccaaag cgatattgtg tagaaaatgc caataaacta
    10081 aaatcaagct catttaagct aaggtttgtt cgtgaagtta cgcttaaaag ctctcgagct
    10141 ggattttctg tataggcaat aattttttca tccaaagcca aaactttccc cttgtaaaaa
    10201 attaagaatg taattatagt caatttttaa tcaattttag ttaaaatagt tctctttata
    10261 ttttgaaatt tatgaaaaaa tttaatgaag agtttagtat ttaaaaattt tattatcaat
    10321 gctttaggaa ttttattttc aagaatttta gggcttgcta gagatgtttt aatagcactt
    10381 tttttaggag cagggcttta tagtgatatt ttttttgtgg ctttaaaaat gcctgctttt
    10441 tttagaagaa tttttgcaga aggagctttt ggacaaagtt ttttgcctaa ttttgtaaaa
    10501 gcgaaaaaaa aaggagcttt ttgcgttagt gtaatgatgc aatttagcct tatagttttt
    10561 ttattttgtc ttttggtaag ttttttctcc tcttttttta ctaagctttt tgcttttggg
    10621 tttaacgcag atactatagc tttagcagct cctttggtgg cgattaattt ttggtatttg
    10681 ttttttattt ttttagttac ttttttagga gctattttaa attatagaca aaaatttttc
    10741 attacctctt tttctgcggc attatttaac ttaagtattg ttatagctgc cttttttgtg
    10801 gataaaaatg caccgcaaaa tacactttat tatttttctt atgcaacggt tttaagtggg
    10861 gtagcacagc ttattttaca tttgcttgtt ttaaaaaaca atcctgtaat ccgtgctatg
    10921 gctttaagta taaaatttaa aaaagctaag gcgaaattac aaggttttta tggcaatttt
    10981 tttcatggag ttttaggttc ttctgcgact caatttagct cattgcttga tacaaccata
    11041 gctagttttt taatgagcgg gagtatttct tatctttatt atgcaaatcg tgtcttccaa
    11101 ctcccccttg cgctttttgc tatcgcttta actcaagttt cttttccaaa aattttaaaa
    11161 catttaaaaa gtgatcaaga aaatttagcc ttaaaattta tgcaaagagc attagcgctt
    11221 ttaagcattt tgcttattgc ttctagtatt gtaggttctg tatttgcttt ggaaatttca
    11281 aagcttttat ttgaaagagg aaatttcact cacgaagata gtgtgattac ggcttatgtt
    11341 ttgattgctt atcttatagg gcttttacct tttggtttgc aaaagctttt ttctttgtgg
    11401 ctttatgcaa aatttaaaca aaaaacagca gcttggatcg cggtaaaatc tttaattatc
    11461 agtgctttat gttctatggc ttttatattt ttgattaaag atgaaagttt aaaggttatt
    11521 gcagtagcac tttcaagctc tattagtgct ttttatttgc ttggagctaa tatcaaagaa
    11581 tttggtttta agaaattttt tgctttaata tctattaaaa tttgcttatt ggttatagtt
    11641 gctttgattg tttttacgat cttgcttatt ttgattaaac cttatatttt aagttttttt
    11701 ataggaattt ttacaagttt taaaggagtt ttttaatgag attattagac agtgtaacaa
    11761 aagagaaaat aaaacttgat aaaaaagata tcagtattta cttatgcggg cctacggttt
    11821 acgatgatgc acatttagga catgcaagaa gtagtgtttg ttttgatctt ttgcgtaggg
    11881 ttttacttgc tcagggcaat agggtaaaat ttgctagaaa ttatacagat attgatgata
    11941 agattttgaa aaaaatggct caaagtggtc aaactttaga ggaaattacg gaattttata
    12001 tcaaaagtta tgaagaggat atgagggttt taaatgtatt agatcctgat tttaaacctc
    12061 gtgcaacgca ttatataaca gctatgcttg atttgattaa aaagcttgct aaggatgggt
    12121 ttgtttatac tctagaagat ggaatttatt ttgatacaag taaagatgaa aaatatttaa
    12181 gcctatcaaa tcgcaattta gaagaaaaca tctctcgtct aagtaatgaa gtgcaaaaaa
    12241 gaaatgaaag cgattttgtg ctttggaaat ttgatgaaaa tttttacgaa agtgaatttg
    12301 gcaaagggcg tccaggttgg catactgaat gtgttgctat gattgattct atttttgaaa
    12361 atactcttga tatacatgct ggagggatag atttgctttt tcctcatcat gaaaatgaag
    12421 ctgcgcaatg tcgttgtgga tgtaagagaa aattagcaaa tatttggctt cacaatggtt
    12481 ttgtaaaaat cgatggcgaa aaaatgagta aaagtttaaa taatagtttt tttataaaag
    12541 atgctttaaa agaatttatg ggcgaggctt taagatttta tcttttgagt tctcattata
    12601 gatctcattt taattattct ttatcggatt tagaaaatgc taaaaaacgt ttagataaat
    12661 tttatcgcct taaaaaaaga ttggatttaa gtgaaatttc tgattttgat gttttaaatg
    12721 atattgaaat aaaaagcgaa attgctaagc aaattttaga gattttaaat gatgatttaa
    12781 atatttctaa agccttagct cttttagatg attttataag taatgcaaat ttagagttgg
    12841 ataaagaaag caaaaataaa attttaaaac aaaatatcaa agaagcttta agtgagctag
    12901 ctaaaatttt tggctttggt tttatggata caactttata ttttcaatgg ggtgtaagca
    12961 aagaagaacg agaagagatt gaaaagttaa ttttagaaag aactgaggct aagaaaaaca
    13021 aagattttaa cacagctgat gcaataagag agcaattaaa tagtaaaaaa atcactcttt
    13081 tagatactcc aaatggaaca atttgggaga aaataaatgc ataatgagat gaatttaaaa
    13141 gaggttttaa tacgctttaa gcccttttat aaaagatatt ggaaacaatt tgctatagct
    13201 atttttggta tgattttagc aagcggagga actgctggaa gtttttatgc tttagagcct
    13261 attttaaatt atattttcgt tgaaaaaaat gaagctttac tttatacagt gccttttttg
    13321 ctagtattga tgtatttttt taaaaatctt ggaacttatt tacaaagttt ttatgtttcc
    13381 tttataggaa cagatatgtt aagagtattg cgtgctaggg ttttgaaaaa tgttttacgc
    13441 ttggatatgg atttttttaa acgctataga agcggagagc ttgtaagtcg ttgtactaat
    13501 gatattaatg cacttcaaag catagtatca aacattattc ctgatttttt tagagagctt
    13561 ttaactgcta taggactgct tgcggtagtc ttgtatcaaa gtcctacttt ggcttttttt
    13621 gctttagtga ttttgccttt agctattttt cctttggtat ggtttgctaa aaaacttaaa
    13681 aaatatgcaa gaaatataca agaaacaaat tcggatttac tttcttattt gggtgaaatt
    13741 ttttcaaata ttgaattgat caaagctaat gataatgaaa aaaaagaaag tgataaattt
    13801 gctaagcata atgatacttt atgtaaatta aacctaaaat ccgcacgtat tgatgcactt
    13861 acaagtcctt taatggatat gatgggttct gttggggttg ctgtggtgat tattgtaggg
    13921 ggtagagagg ttatcaatgg ttctatgagt gtgggaagtt ttatcagttt tgtttcggca
    13981 ctttttgcga tatatactcc tttaaagcgt ctttcgtctt tatatggaaa acttcaaggt
    14041 gctgttgcgg caagtgaaag aactttttat ttattggatt tagaacctca aattaaaggt
    14101 ggaagcaaag aattaaaaaa cattgaaaaa attagctttg aaaatgttga atttgcttat
    14161 gaaaacccgc ataaaagtgt tttaaaaggc gtaaattttg attttgttaa agggcaaatg
    14221 cttgctcttg tagggacaag tgggggtggc aaatcttcta ttattaatct tttgatgtat
    14281 ttttatgaaa agcaaaaagg taaaatttta ctcaatcaag aagatattag cacttttacc
    14341 atagaaagct tacatgctaa aataggactt gtaacgcaaa atatttatct ttttaatgat
    14401 agttttgctg caaatattgc ttatagcgaa gagttagaag aagaaaaagt catccaagct
    14461 ttaaaattgg ccaatgccta tgaatttgtt aaagaaatgg gcgggatttg ggctgaagtg
    14521 aaagaacatg gtaaaaactt aagtggagga caaaaacaaa gaatagcaat cgctagagct
    14581 ttatataaaa atcctgatgt gcttattttt gatgaagcaa cttcagcttt ggataatgaa
    14641 agtgaaaaag caatagttaa aactatagaa aatttaaaac aagacagatt gattttagtg
    14701 gttgcacatc gtttaagcac tatagaaaat gcagataaaa tagtagtatt ggataagggt
    14761 aaggtattgg caataggtaa agatgaagag cttttgcaaa cttgttcttt gtatcaaaaa
    14821 tttaaaagca aagaaaaaac aaagcctagc tttagttaat tttagttaga attttaaaaa
    14881 ggattaaaaa atggcttatg aaatgataaa acctttactt tttaagttaa accctgagta
    14941 tacacatgct ttggttgaat gtagcttaag ggctttaagt gctagttttc caggagcttt
    15001 aagtttttta gcacacaaat atatagttga taatgagagt ttaaggcaaa atttacttgg
    15061 acttgatttt aataaccctg tgggtttagc aggaggcttt gataaaaatg ctactatgat
    15121 aagacctttg agtgctttag gatttggctt tttagaagtg ggaactttta ctccaaaacc
    15181 tcaagaaggc aatgaaaaac cacgtctatt tagacttgta aaacaagaaa gtatacaaaa
    15241 tgctatgggt tttaacaacg aaggtgctga aaagattgct ttaagacttg caaaaactta
    15301 tccttttgtt ttacccttag gagtaaatat agggaaaaat aaaatcactc caaatgataa
    15361 agccttggag gattatttta ctttgtttag agattttaag gatttatgtg attattttat
    15421 cgttaatatc tcatctccta atactaaaaa tttaagagag ttacaaaatg atgatttttt
    15481 aaataccttg cttgaagaag ccaaaaaaat tacttctaag cctattttga taaaaattgc
    15541 tcctgatata aaaatagatg atgctttaaa tttatgtgaa aatgctatta aaaaaggtgc
    15601 agatgggttt atattagcca atactagtgt tgattatagc ttgctagata ataatcgtac
    15661 ttttggtggt attagcggaa ggctgattac ggaaaaaagt ggtatttttt tcaaagaagt
    15721 agctaagatt ctttttggta aaaccttgct tattgcaagt ggagggattg atagtgctga
    15781 tattgcttat gatcgtatta aaaatggggc taatttggtg caagtttata cagctttgat
    15841 ttttaaaggt ccttctttgg taaaaaatat caatcaaaat cttatagagc ttttaagaaa
    15901 agatggtttt ttacacatta gcgaagctgt tggggtaaat ttaaaatgat tgcttatgaa
    15961 aaaattcaat taaaaaacaa gcttgaaatt tatgctttgc ctgtaaataa aaatagcgat
    16021 gtgattagcg ttgatatttt ttataaagtg ggttcaagaa atgagatcat gggaaaaagt
    16081 ggcatagctc atatgttaga acatttaaat tttaaaagta ctaaaaattt aaaagctggc
    16141 gaatttgatg agattgttaa aggttttggt ggtgtggata atgcaagcac aggttttgac
    16201 tatactcatt attatattaa atgtgcgaag aaaaatttag ataaagcttt agagcttttt
    16261 gcggaactta tggcgaattt aaatttaaaa gatgaagaat ttcagcctga aagagcagtg
    16321 gttttagaag agcgtagatg gagaacagat aataaccctt taggatatct ttattttaga
    16381 ctttttaatc atgcatttat gtatcatcct tatcattgga ctcctatagg tttttttaaa
    16441 gatatagaaa attggagcat tgaggatatt aaagaatttc acagtattta ctatcaacct
    16501 aaaaatgcga ttttacttgt aagtggcgat atagaaagta aagaagtttt tgagctttca
    16561 aaacaacatt ttgaaaagat taaaaatact aagactatgc ctaaaattca cacaaaagag
    16621 cctaagcaag atggagtaaa aagaatatat ttgcataaaa actcagatac tgaactatta
    16681 gcccttgctt ataaaattcc aaatttcaag cacaaagata tacctgcttt aaatgcttta
    16741 tccgagcttt taggaagtgg gaaaagttct ttaatgagtg aaattttgat tgataaatta
    16801 aatttaatca atgattatta tgcttatgtt aatgattgta tagatgaaaa tttatttatt
    16861 tttatttgta attgtaaccc caatgttaat gcagaaaaag tagaaaaaga gcttttaaaa
    16921 atcattgata aacttaaaat gggtaaaatt tctcaaaaag atttgcaaag agtgaaaaat
    16981 aatgtcaaaa gtgattttat tttctcactt aacaatgcta gtgcagtggc aaatatttat
    17041 ggttcatatc tagcaagagg agatatcaat cctttgttaa attatgagaa agatatacaa
    17101 aatttggaat taaaagattt gatttcttgt gctaaaaaat attttattca agaaaattca
    17161 actacggtaa ttctaagaaa ggattcaaat ggataaaaat attatcattg gggcgatgac
    17221 agcccttatt acaccgttta aaaatggaaa agttgatgag caaagctatg caagattgat
    17281 taaaagacaa atagaaaatg gcatcgatgc agtagttcca gtaggaacaa caggagaaag
    17341 tgcaacttta acccatgaag aacatagaac ttgcatagaa atagccgttg aaacttgcaa
    17401 aggaactaag gttaaggttt tagcaggtgc gggaagtaat gcaactcatg aggcagtggg
    17461 tttggctaaa tttgctaaag aacatggtgc tgatgggatt ttaagtgtgg caccgtatta
    17521 taataaacct acgcaacaag gactttacga gcattataag gctattgcgc aaagtgtaga
    17581 tattcctgtg cttttatata atgttccagg aagaacaggt tgtgaaattt caacagatac
    17641 tattatcaag ctttttagag attgtgaaaa tatttatggg gtaaaagaag cgagtggaaa
    17701 tatcgataag tgtgtggatt tgcttgcgca cgaacctaga atgatgctta tttcaggaga
    17761 agatgcaatc aattatccta tactttcaaa tggcggaaag ggagttattt cagtaacttc
    17821 aaatttatta cctgatatga ttagtgcttt aactcatttc gctttagatg aaaattataa
    17881 agaagctaaa aaaatcaatg atgaacttta taatatcaat aaaattttat tttgcgaaag
    17941 taatcctatt cctattaaaa cggctatgta tatagctgga ttgatagaaa gtttggagtt
    18001 tagacttcct ctttgtcctc taagtaagga aaattttgct aaaattgaag aagtgatgaa
    18061 aaaatataag atcaaaggat tttaatgaat acagaatttc aaggaaaaac tttagtaatc
    18121 agcggtggaa ctcgcgggat aggcaaagct atagtttatg aatttgctaa agtgggtgca
    18181 aatatagctt ttacttataa ttccaatgca caaattgctg atgaaatggt gcaagatttg
    18241 gaaaaaaatt ataaaatcaa agctagagct tatgagttta atatcttaga acctgaaact
    18301 tataaagaac tttttgaaaa aattgatgtg gattttgata gggtggatta ttttatctca
    18361 aatgctatca tttcaggacg tgcggttgta ggtggttata ctaaatttat gaagttaaaa
    18421 ccaaaaggaa ttaataacat ctttacagcc acagttaatg cttttgttgt gggcgcacaa
    18481 gaagcagcca aaagaatgga aaaagtaggg ggtggaagca ttatttctat ctcatctaca
    18541 ggaaatttag tgtatataga aaattattca ggtcatggca cagcaaaagc tgccgtagaa
    18601 gctatggcaa gatatgcggc tactgaactt ggagaaaaaa atatccgtgt aaatgtcgta
    18661 agtggcgggc ctattgaaac tgatgcttta agagctttta taaattatga agaagtaaaa
    18721 caggctacta taaatttaag ccctttaaat cgcatggggc agcctgaaga tttggctgga
    18781 gcatgtcttt ttctttgttc aagtaaggca agttgggtta caggacatac tttcatcgtt
    18841 gatggtggta caacttttaa ataaaaatta agaaaaatca atggattttt cttaaaaata
    18901 tttttcaatc aagttttaat ttccacccta aaaaaacact taataatgca agtaaaaaaa
    18961 taaaatttaa agtccaatta ccaaaaccta taaaacctat agataatacg ctgtaaaaaa
    19021 atcctcctac agctgaataa atacaaatcg tacttaaaga tccattttct gccatttttt
    19081 tacatgggca gattttataa aattttttat cattaaattg atttttcttt ttatttccca
    19141 aaaataaacc aaaaagggca aaaagattta aaaaaataaa agcatataat aaaatttgat
    19201 ctaattccat tttaatatac cttaaaaata tctaagccaa gagggtagat ggacttgctc
    19261 ttcttttaaa gtagtttctt gtccatgtcc tggcaaaagt ttaaaatctt ctttgtaagt
    19321 cataactttt tctaagcttt gtttcattaa atttgcatct gaataaggaa aatcccatct
    19381 tcctatgctt ctataaaata aaaaatctcc actaaacatg atatttttac ctacaatttc
    19441 tatcatagtg caacctggtg tgtgtcctgg taaaaagtga aatttaaaat caactccgca
    19501 aatatttaaa atatcttcat tatctactaa aaaatccgca tcgctagaat catagccttg
    19561 attgaaatca tcatgtagca taaaagcatc atttttatga atataaatgg ggatttgata
    19621 ggcttgtttt actttttcat tatcccaaac atgatcgtaa tgtccgtgag tgtttaaaat
    19681 cgctaaagga ttttttacat gttttttgat gaaatttagc gcatcaaaac caggatcaat
    19741 tataatttct ccatgctcac caaataaaat ataacaattt gtctcataag ctccacaagc
    19801 ttgtttgata atttgcattt tttgcctctt taataaaaaa tttgccttaa ataaatataa
    19861 ttatacatta aatttttaaa aggcaagctt tatggattgg caaaagatta cggaaaaaat
    19921 gtgtgatttt atacaagaaa aagtgaaaaa ttctcaaagt caaggtgtgg ttttggggct
    19981 tagtggtggg attgattctg ctttagtagc aacgctttgt aaaagagctt taaaagaaaa
    20041 tgtttttgct cttttaatgc caactcaaat ttcaaataaa gtcaatcttg aagatgcttt
    20101 aaggctttgt gcggatttaa atcttgaata taaaatcata gaaattcaaa gcattttaga
    20161 tgcttttata aagcaaagtg aaaataccac tctagtatct ttgggaaatt ttgcagctcg
    20221 tattagaatg agtttgcttt atgattattc tgctttgaaa aattctttag tcataggcac
    20281 ttctaataaa agcgaattac ttttgggtta tggtacgatt tatggagatt tagcttgtgc
    20341 ttttaatcct ataggatcgc tttataaaag tgaaatttat gccttagcaa aataccttaa
    20401 cttgcatgaa aattttatca aaaaagctcc aagtgcggat ctttgggaaa atcaaagcga
    20461 tgaagcggat ttgggttttt cttatgcaaa aatcgatgag ggcttaaaag ctttggaaaa
    20521 taatgacgaa aagcttttaa aaacactgga tccttctttg attgctatgt taaaaaatcg
    20581 catgcaaaaa aatgctttta agggaaaaat gcctgaaatt ttggaaattt aaacaatgaa
    20641 tgaagaaaaa aattatgaac tttggcttga taattatttt tttaagccca atttttggca
    20701 aaaatgcctt gcttttgtac tttttccctt aagtgtgctt tatgcttttt ttgcgatttt
    20761 aaatactttt tttcgtaaaa aaatagtttt taaaaaacct gttattagcg ttggtaattt
    20821 aagttttgga ggtaatggaa aaaccccgct ttgtaaagct atagcaaggg aatttgatgg
    20881 cgtttttata gtacttaggg gctataaaag aaaatctaaa ggtttgtttg ttgttaaaaa
    20941 tcaaaatgaa attttatgca ccttaacaca aagtggcgat gaagctatgg agtatgcttt
    21001 tgaagaaaat atcaaaggtg tgattgtgag cgaagataga gtaaaaggta ttgaaaaagc
    21061 ttttgaattg ggagctaaaa tcgttgtact tgatgatgct ttttctaaat ttcatattaa
    21121 aaaatttgat attttacttg aaggtaaaat caaaccttat tttaatttta ccctaccaag
    21181 tggagcttat cgtttgccga aattttatga aaaaagggct gattttattg cattagaagg
    21241 cagggatttt gtgcgttatt cttttgtaaa agaaaatcca aaggctattt tggtaactgc
    21301 tattgctaaa ccttttagat tgtatgaaca ttttatcaaa gcaagggctt gttatttttt
    21361 taaagatcat tatgagttta aaaaagaaga attagaaaat ttgctaaaaa aacataattg
    21421 cgatacacta atgcttactt ttaaggattt tgttaaagtt aaagattttg gttttaaatg
    21481 tcaaattata gaattaaata tagaattaaa agattcatta agggaaaaaa taaaaactta
    21541 tatcaaggag tttgagcaat gaaattagtc gagagtagaa atgtaaataa tgtatcaagt
    21601 tttaaggaag ctttgattaa cccaaacgcc ccagaaggag ggctttactc acctttaaat
    21661 ttgcctattt ttgaaggaga aaaatatgcc aatttgtctt ataaagattt tgctttaaag
    21721 cttatagaaa gttttggttt tggcgaagaa gagcttttta aaaaggcttt gaaaagttac
    21781 gaaagctttg atgataaaaa tacacctatt tctttgcaaa aaatctctga aaaaacctat
    21841 attaacgagc tttggcatgg gcctacaaga gcttttaaag atatggcttt acagcctttt
    21901 ggcgtgcttt taagcgaatt ttcaaaggat aaaaatattt taattatttg tgctacgagc
    21961 ggcgatacag gacctgcaac cttaaaaagc tttgaaaatg caaaaaatgt taaagtagct
    22021 tgtatgtatc caaaaggtgg cacaagtgga gttcaagagt tgcaaatgcg agctttagat
    22081 aaggataatt tgaaagtttt tgctatagat gaggattttg acgcagcgca acgcacttta
    22141 aaagaattgc ttttttcaaa agattttcaa aacgaaatta gagctttaaa ttatgagctt
    22201 tgcgtagcga attctgtaaa ttttgggcgt attttatttc agattattta tcattattat
    22261 gcgagtttaa aactttttaa tgagttttta gaagaagtac aaatcattgt tccaagtgga
    22321 aattttggca atgctttagg ggctttttat gctaaaaaaa tgggagctaa aatttcaaaa
    22381 atcaaaatcg cttcaaatgt gaataatatt ttgagtgaat tttttaatca tggcgtttat
    22441 gatttgcgtg aaaaaagtct taagaagact atttctccag ctatggatat acttatttca
    22501 tctaatatcg aaagactttt gtttgcgaaa tttaaagata aaagaaccaa agaactgatg
    22561 aatttgttga aaaatgagag atattttaaa cttgaaaaag aagaattgca aagtttgcaa
    22621 gaagattttg aggcggattt ttgcaccgat gaagaatgta tgcaatttat caaacaaagc
    22681 aagattttaa tcgatccgca caccgcaact tgttttaaaa tgcttgatcc tttaaaacct
    22741 agcattatta cctctacagc agaatggaca aaatttactc caagtatgat aaaagcttta
    22801 tacgataggg attctaagaa tgaaaaagaa gatttaaaat ttatagctaa agagtttaat
    22861 gtccaagtta aagatgaaat tttggcttta tttgacttga aaaatagcga tgaaaaggta
    22921 tttgaagtca aaaatataaa aaaagaaatt ttagattgga tgcaaaaatg attattattc
    22981 ctgcaagatt aaaatcaagt cgttttcatg agaaaatttt atgtgatgta ggtggagtgc
    23041 ctatgtttgt ggctactgca agaagggtaa gtagtgtgga tgaagtttgt atagctttag
    23101 atgatgaaaa agttttaagt atcgctaaag aatatggttt aaatgcagtt ttaacaagca
    23161 aaaatcatga aagcggtacg gataggatta atgaagcttg taagaaacta gctttaaaag
    23221 atgatgagat tattatcaat gtccaagctg atgagccttt tatagaatgt gaaaatttat
    23281 taaaatttaa agaatttgca agttcttgct tggataaaaa agcttttatg gcgagttgtt
    23341 ataaaaaaat cactcaagaa gaagctatgg atcctaattt ggttaaagtg ctttgcgata
    23401 aagaaggata tgctttgtat ttttcaagag ctaaaatccc ttatgaaaga gaaaattacg
    23461 aggaaagttt taaagggcat ttaggcattt atgcttatag tgtaaaagct ttaagagagt
    23521 tttgttcttt attaagttct gcacttgaaa gagcggaaaa attagagcaa ttaagagcta
    23581 tagaaaatgg taaaaaaatc aaaatgcttg aaatttcaac aacaagcatg gggattgata
    23641 ccaaagaaga ctatgaaaag gctttaaaaa tttatttaga aaaataactc caccccaaaa
    23701 cggaacagat cttgcttata ttattttaat atatttaggt tgaaggcaaa aaatctaaat
    23761 caaggaatta atatgagtat ctttagtatc aatgataact caaactataa ttctatactt
    23821 tcacaagcaa aagctaataa agaaggtaaa gaaaattcta aaataagttt tgctaatgct
    23881 tttttaaaac aaaatgctag taagttaaat gaaattcaaa atgcaaattc acaaactcta
    23941 gcaagaagtg aagcattaaa ttctactaat acaacaaatg ctagtaataa cactaatctt
    24001 agcattaata ataccactca aacagcttcc cctaattata atatatcaag tgaatttaaa
    24061 aactctattt atactctaaa atacaaacaa gcagatataa gtaatacttc tactaataca
    24121 gcttatggtt atagtgtaga taaagatggt tatatgggaa gtgactttaa caaagccgca
    24181 ggattgcctg aagattttaa gatacataaa tctactttgg atgagatata tagtttcaat
    24241 acaagtttta aagaacacac tgcaaacgat ttaggcgttt caaattattt attatacaaa
    24301 catagatatg gccgatacca taagacaata ctattccaaa tttaatcaaa ttataaatca
    24361 tagttttggt aattctaata aaactagctt tagtatagaa gatttaaatt ctttaccaaa
    24421 ggggtatagt attcataata cggattttaa gtttatgttt caaaatttag atagtcaaac
    24481 tataacaaat ttctataata cacaagaacg atataatgaa gcagaacaat taggaatgtt
    24541 tgggcatatt aatataggct tacaaccatt aaatttcact ccgcaaagta tgcaaactca
    24601 aaatttagat gaaaatagtg caaaatatac ttttaatcct gatatgtcag tttatccaca
    24661 aaatgaagat ggaagttatt ctaaagaagc tttgtttatg agttttttaa aatctagcgg
    24721 tggagaagct ttagaaggtg gtaatacaac attaaatcca ttagttaaag cacatattga
    24781 agctatgacg aaagaaagct ttgatggctc tttagcttct ttagatgaca ttatgacagg
    24841 taaagttgat tttgcaagtt tgttaaaagg ctatgcacaa gagggttggc ttgatgcaga
    24901 tatatatgca atggaaaaag gagttaaatg gcaaaataca agtataggtt atggtggagc
    24961 ttggtttgat aatcagttta atcaagcaaa agctaatggt tggaaagcaa gtaaccaaag
    25021 tatagactct tatgttagtt ctataatgga tagacttaat aatcttatag gacaaactag
    25081 ggtttaggaa gtattaattt tttaagttcg aaataaattg ctaataacaa aataagataa
    25141 aattggtata atttttttac aaaaaaattt gaaaggaaat tatgaaaaaa attattttga
    25201 tttttatctc tttttttgct ttaaatttga gtgcaaaaga tttggttgta ggaatggagc
    25261 ttggatatcc gccttttgaa atgagcgata aaacaggcaa agcaagtgga attagcgtgg
    25321 attttttaga agcttttgca aagaaaaacg gctataaact tgtagtaaaa aatatcgctt
    25381 gggatggttt aatacctgct ttaaaaacag ccaagataga tcttattatg tcctctatga
    25441 caattaccga tgagagaaag aaagtggtgg attttagcat tccttatgct aaggcaaatt
    25501 tggctatttt aactcctttg aactctgata ttacaaatat caaagattta gataaaaagg
    25561 gcaaagtttt ggctttaaag cgtggctcta caggacattt atatgcggtt aaaaatttaa
    25621 aaaatgcaac tattaattta tttgataaag aaaatgctgc tattttggaa gtgattcaag
    25681 gtaaggctga tggatttttt tatgatcaac ttacgattta tcgcacttgg caaaaacatc
    25741 aagatacaac tagagccatt ttggcacctt ttcaagaaaa tcctgagttt tggggtatag
    25801 cagtacaaaa aggcaatgca gaacttaaaa aagagcttga tgaatttatt gcagaaagca
    25861 aaaaagatgg gttttttgat tctttaggag agaaatatct taaagatgtt aaagatactt
    25921 ttaaaaagaa taatttagaa ttctttttct aagaaggatt ttccttctta ggttacaaag
    25981 ctttccacaa gcctttgcac tagcaaattc catccatcca ctaatacaaa aattaagagt
    26041 ttaaaaggta aagagatcat agtaggaggt agcatcatca tacccatagc cattaaaact
    26101 gagcttacaa ccatatctat gactaaaaag ggcaggtaga ttaaaaaccc tatttcaaaa
    26161 gcggttttaa gctctgaaat cataaaagca ggaactaaaa ccgtaagggg aacatcatct
    26221 atggttttgg gattaggtag attgcgtatg cgataaaaaa gggctaaatc tttttcgcga
    26281 gtatttttaa gcataaaatc tttaaaaggc tttgctcctt ttataaaagc ctcttcatag
    26341 cctatttttt ctgctaaata aggttttata ccttcattat aggattttgt agctacaggt
    26401 tccatgataa aaaaagttaa aattaaagcc aaggttacca aaatagtgtt aggtggcata
    26461 ctttgcgtcc ccatagcttg tcgtaaaaat gaaaatacta caataagacg caagaaagaa
    26521 gtcataacaa aaactatact tggagcgagc gcaagtatgg ttaaaacaat cactatattt
    26581 aaagtagtaa caagctgatt aggtgtattg ggtgcactta agcttaaatt tactgtaggg
    26641 atagttgctt cagcagcaaa taagctcatg cttaaaagta aaaataataa tatttttttc
    26701 aaaatttaaa aacctttttt tgttttttat taaagaaatt taaattttat cttttgatga
    26761 ctaaaaacta gtttaagggt attaggattt taactttaaa ctgctaaaat agtcttttag
    26821 acttcttaat aacaaaggta aaaaatgaaa acttctattt tgattttagc ggcaggatta
    26881 ggcactagaa taaaatcaca aaagccaaag gttttgcaag agctttgtca aaaaagtatg
    26941 attttacaca ttttaaaaaa ggcttttgct ttaagtgatg atgtaagtgt agttttatcg
    27001 catcaaaaag aacgcgttga aaaagaaatt ttagaatatt ttccaaaaac acaaatttta
    27061 gagcaagatt tgcaaaatta tccaggaact gcgggagctt taagtgggtt tgagcctaaa
    27121 aatgaaagag tgttgattct ttgtggtgat atgcctttgg ttgagcaaac aagtttggaa
    27181 gctttgttgg gtaataatgc aaaattaaat ctagcagttt ttaaagcaag agatcctaaa
    27241 agttatggta gggtggtgat aaaaaacgat agcgttgaaa aaattgttga atttaaagat
    27301 gcaaatacgc aagaaaaaga gataaatact tgcaatgctg gggtttatgt gattgactcg
    27361 aggcttttaa aagagctttt acctttgatt gataacaata atgcggcaaa agagtattat
    27421 ttaaccgaca ttgtaaaact agcaaaagaa aaagatgtga tgattaaagc agtttttgta
    27481 gatgaagatg aatttatggg gattaatgat aaatttgaac tcagtatagc tgaaaatttc
    27541 atgcaaaaaa aaattaaaaa atactggatg caacagggtg tgatttttca tttaccgcaa
    27601 agcactttta taggtgcaga tgttgaattt gtaggtgaat gtgaagtata tgaaaatgta
    27661 aggatagagg gcaaaagtaa gattataaac tctatcatta aaagttcaag cgtgatagaa
    27721 aattccatcg tagaaaatag cgatgtaggg cctttggcac atttgcgtcc aaattgtgag
    27781 ttaaaaaaca ctcatatagg aaattttgta gaatgcaaaa atgcaaagtt aaataccgta
    27841 aaagcagggc atttgagtta tttgggagat tgtgagatag atagtggaac caatataggc
    27901 tgtgggacta ttacatgcaa ttatgatggg gtaaaaaagc ataaaaccat cataggaaaa
    27961 aatgtttttg taggttcgga tacgcaattt attgcacctg taaaaatcga agatgaagtg
    28021 atcatagcag caggaagcac agtaagtgtc aatgtagaaa aaggtgcttt gtttatcaat
    28081 agagcagagc ataaaatgat aaaagattat tattacaaga aatttcaaaa atgaaaaccg
    28141 tacttttagc cattagtggc agtatagctt tttataaatc ttacgagctt atttctttgt
    28201 ttaaaaaaga aggctttagg gtgaaagttt tgctttctaa tggtttgtta aaatttgcta
    28261 gcaaaatgag ttttgaagcc ttggttgatg aagttttatg cgaggaaaat gaaagttggc
    28321 aaaattcaaa caatcacata gcttttagca aggatgtaga ccttgttttg tttgcccctg
    28381 caagtgttaa ttctatcaat aaacttgctt ttggtatagc ggataatctt tttatccaaa
    28441 ccttaatcgc agcaaataaa tctcttatca tagctcctgc ggcaaataca aatatgtttc
    28501 atcattttag cacgcaaaat tctttaaaga tgcttaaaga aaataaagct ttgattatag
    28561 agcctatttg taaagtttta gcttgtaaag atgaaggcgt aggagcctta gctgaagtta
    28621 agaatatttt taatatcgtc aaaagagaac ttttaaaaga aaagttttgg tgcgataaaa
    28681 gtgtagttat cacaggtggc ggcacaaaag aaaagatcga tgatgtgcgt tgtgtgagta
    28741 atttttcaag tggaaaaatg gcaaaggcca tagctgatgc tttttatttt ttaggagcta
    28801 gggtaaaact tttaagctct gtggaatttg atacgcctta tgagctttgc aaatttgaaa
    28861 gttctaagga cctaaaggag cttttggata aaaatttaaa tcatgacttt ttgattatga
    28921 cggctgcggt aagtgatttt atccctcaaa gtgtaaaagg gaaaattaaa aaaaatgagc
    28981 atttacaggg tttaaatttg catctatctt taaatgaaga tttgcttaaa acttgcaaat
    29041 ttcaaggcaa aaagataggt tttaagatgg aatttgattc tcaaaatgcc ttagaaaatg
    29101 cgaaaaaatc tttaaaagat aagcagcttg atatggtttg tcttaatatc attgatcaaa
    29161 aaaattattt tggaagcgat caaaatgagc tttattttat cactttaaac aatgaaaata
    29221 aaagcacttt gcaaagcaaa gaaaaattgg catttgaatt agtaaaatgg tgtgaaaaat
    29281 tatgagtatg attaattcta ccttacctat acaaatgaaa gttttagcta aatcaggtta
    29341 tagacattat acgcttttat taaatcacaa aaagattcaa accaaaagca tgatagagct
    29401 tgaaattggt gctgaatatt tagctgaact ttatatgcaa aatggtggag ttatacaatt
    29461 taaacatctt tcaaagcgtc ctaattttaa accttttgaa gagggattgg ctttgataat
    29521 cgctatttta gaggataaaa tttcttataa aaaattcatt atacaaaatc ttttagattg
    29581 taaagatata gagcgttatc agatattaaa agaaatgctt tttgcaagtt ttgaaaatat
    29641 ttatcatatt ccttttaact ttgaaaataa atcttgcttg tttcaaatgc gtaaaagagc
    29701 aaaatattta gaaatttact tatattttag tgtttttgga gctttaaaaa ttttaataga
    29761 ctcgcaaggc attagtgttt ttacaccttt tgccaaggtg caaaaatttt taaacgaaca
    29821 tttagatttt aatgtatcgc aagaaaacaa gattgaacct ttgtttgttt tcaaaaggct
    29881 ttttgatttt aaaggatgaa aaatgaatga attaaaacac cttgctgttg ttatggatgg
    29941 caataggcgg tgggctagag ctaagggttt tttggcaaag cttggatatt cccaaggagt
    30001 caaaactatg caaaaattga tggaagtttg catggaagaa aatatttcaa atttaagcct
    30061 ttttgctttt agtacggaaa attggaagcg tcctaaagat gaaattgatt ttatctttga
    30121 acttttagat cgttgtttag atgaagcttt agaaaaattt gaaaaaaata atgtgcgttt
    30181 aagagctata ggtgatttat cgcgcttgga agataaagta agagaaaaaa ttaccttagt
    30241 tgaagaaaaa acaaagcatt gtgacgcact ttgtgttaat ttggctataa gttatggtgc
    30301 aagagatgag attataagag ctgctaagcg tgtgattgaa aaaaaacttg agctaaatga
    30361 agaaaattta acgcaaaatt tagatttacc tttagatgtg gatttgatgc ttcgcgttgg
    30421 aaacgctaaa agactttcaa atttcttact ttggcagtgt tcatatgctg aaatttattt
    30481 tagtgaaact ttatttccat ctcttaccaa gagagaattt aaaaggatta ttaaagaatt
    30541 tagaaataga gaaagaactt ttggaaaatg atatttttca taataattct aggggcttgt
    30601 ttgggttctt tttgcacaag tttggcaagt aggataattg aaaaaaaact cttttttatc
    30661 tcgcgctctt tttgtttttc ttgtgataca aaattaaaat actatgaaat tattcctatt
    30721 ttttcttata tttttttaaa ggcaaaatgt caaacttgta aatgtcattt gtctatttct
    30781 ttgttaatca atgaaatttt aggcgcaatt ttgcttattt tggtttattc tttaagtcaa
    30841 aatttttatg att
//
LOCUS       DAPIWU010000008        27228 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.008, whole genome shotgun sequence.
ACCESSION   DAPIWU010000008 DAPIWU010000000
VERSION     DAPIWU010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27228
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.008"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..645)
                     /locus_tag="RJ285_000281"
     CDS             complement(<1..645)
                     /locus_tag="RJ285_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7383097.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACEI
                     TFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVFNQKEFLDFLSKQRHFCWSVWAKC
                     FRKDIILKSFEKIKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGR"
     gene            704..1654
                     /gene="waaF"
                     /locus_tag="RJ285_000282"
     CDS             704..1654
                     /gene="waaF"
                     /locus_tag="RJ285_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDV7383098.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLV
                     HLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI"
     gene            complement(1640..2404)
                     /locus_tag="RJ285_000283"
     CDS             complement(1640..2404)
                     /locus_tag="RJ285_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDV7383099.1"
                     /translation="MKVFIINLERSLDRKEHMKKQIQKLFEKNPSLKNKLEFIFFKAI
                     DAKNKEHLEFKDHFPWWGSWVLGRELSDGEKACFASHYKLWQECVKLDEPIIILEDDV
                     EFSDEFLIMGQEYIDELLKSKYEYIRLCYLFDKRLYFLSEGGYYLSFEKLAGTQGYVL
                     QVSAAMKFLKYAKNWIYAVDDYMDMFYKHNVLNIVKKPLLLKHDCRIESSISQARRLF
                     LKAKFYRKIIREIFRLYRNILKLSYTFYIKKKLDIS"
     gene            complement(2404..2964)
                     /gene="gmhA"
                     /locus_tag="RJ285_000284"
     CDS             complement(2404..2964)
                     /gene="gmhA"
                     /locus_tag="RJ285_000284"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDV7383100.1"
                     /translation="MINLVEKEWQEHQKIVQESEILKGQIAKIGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSLNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(2961..4346)
                     /gene="rfaE1"
                     /locus_tag="RJ285_000285"
     CDS             complement(2961..4346)
                     /gene="rfaE1"
                     /locus_tag="RJ285_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HDV7383101.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDKSGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISEILLENELIALFDEKIKDFKAVVLSDYAKGILTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEAGIALFNEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANEIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIRSFKSMSFEKKIKNKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGSNLISRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(4339..5292)
                     /gene="rfaD"
                     /locus_tag="RJ285_000286"
     CDS             complement(4339..5292)
                     /gene="rfaD"
                     /locus_tag="RJ285_000286"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDV7383102.1"
                     /translation="MKIAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVISANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            complement(5293..5853)
                     /gene="gmhB"
                     /locus_tag="RJ285_000287"
     CDS             complement(5293..5853)
                     /gene="gmhB"
                     /locus_tag="RJ285_000287"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDV7383103.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARNYLLFIATNQSGIARGYYKESDFFKLCDYMLKEFAKQDIKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNADIGTLILVNE
                     EKKEGDFFRQFKNLKEILNFFKEKDI"
     gene            5935..6237
                     /locus_tag="RJ285_000288"
     CDS             5935..6237
                     /locus_tag="RJ285_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDV7383104.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(6260..6466)
                     /gene="ccoS"
                     /locus_tag="RJ285_000289"
     CDS             complement(6260..6466)
                     /gene="ccoS"
                     /locus_tag="RJ285_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HDV7383105.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(6463..8820)
                     /locus_tag="RJ285_000290"
     CDS             complement(6463..8820)
                     /locus_tag="RJ285_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HDV7383106.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKIFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFVSKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIVLYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            8929..10227
                     /gene="rho"
                     /locus_tag="RJ285_000291"
     CDS             8929..10227
                     /gene="rho"
                     /locus_tag="RJ285_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDV7383107.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            10231..11766
                     /locus_tag="RJ285_000292"
     CDS             10231..11766
                     /locus_tag="RJ285_000292"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDV7383108.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKTFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENMTNITPRITPAPIIPNLEKKIEKNAYEILLDSIYDRDFNLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGNPQIQ
                     NID"
     gene            11846..13747
                     /locus_tag="RJ285_000293"
     CDS             11846..13747
                     /locus_tag="RJ285_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HDV7383109.1"
                     /translation="MQRRDFLNGMALAVVAGMTPLQLLYGKDSKIEDFTKEYYPPNLL
                     GLRGSNNKSYKYAHMLRDGDKFGFSSIKPKENYDLVIVGAGISGLAAACFYQQKFGEN
                     KKILILDNHDDFGGHARRNEIQLDEGTILSYGGSESFQSPKALYSKEVIELLKSLGVS
                     IDELAKRFDVNFYPDLKLSRGVYFSKENFGVDKVVNGNPRKVICDDIPDSKNNGKSIE
                     NFIKDFPMTSKDKRELISLFKSNKDYLKGLSKEEKEEYMAKTSYKKFLEEKVKLSQKA
                     ITFFEGMTDDFLALGIDAISCEDARISFLPGFDKLGLDPIEGEALAEMEEPYIYHCAD
                     GNATVARLMVRKLIPTVSQKGKDMDDITLAHFDYSKLDDSNNKVRLRLNSTVIHVENT
                     KNGTLISYINQGKKYRIKAKNVVMANYNNMIPYIIPSLPKEQKEALSKNVKTSLLHTK
                     VIISNWEPFIKLGVHEIYSPKMPYARTKLDYPVDMGGYHHPRDPKKPICIHMVCSPLA
                     LANIQGIDLEGLDARDRARVGRNLLFTMSFEEHEKIIRGQLQGMLGTAGFNHEKDILA
                     IVVNRWGHCYSYTENSLYDDPKIAEQTRLIARKPFGNIVIANSDSDWSAYMHSAIDQA
                     YRAINEIKA"
     gene            complement(13737..15842)
                     /gene="copA"
                     /locus_tag="RJ285_000294"
     CDS             complement(13737..15842)
                     /gene="copA"
                     /locus_tag="RJ285_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HDV7383110.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQKKRKDIIAKIKNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGFKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDIYLAGSAKFLHENEIDTKESDIFFDTFKEYIR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFEKTLFVGDGINDAAALSAASVSISFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRSIIKLNLFWAFIYNVLCIPIAAGFVPFIALSPHIAALAM
                     CFSSVTVVFNSLRLRKSKP"
     gene            complement(15842..16036)
                     /locus_tag="RJ285_000295"
     CDS             complement(15842..16036)
                     /locus_tag="RJ285_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HDV7383111.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(16026..16976)
                     /gene="czcD"
                     /locus_tag="RJ285_000296"
     CDS             complement(16026..16976)
                     /gene="czcD"
                     /locus_tag="RJ285_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HDV7383112.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSDIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(17052..17315)
                     /locus_tag="RJ285_000297"
     CDS             complement(17052..17315)
                     /locus_tag="RJ285_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HDV7383113.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(17385..17879)
                     /locus_tag="RJ285_000298"
     CDS             complement(17385..17879)
                     /locus_tag="RJ285_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDV7383114.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(17876..18652)
                     /locus_tag="RJ285_000299"
     CDS             complement(17876..18652)
                     /locus_tag="RJ285_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HDV7383115.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            18719..19645
                     /locus_tag="RJ285_000300"
     CDS             18719..19645
                     /locus_tag="RJ285_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HDV7383116.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQRLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(19642..20244)
                     /locus_tag="RJ285_000301"
     CDS             complement(19642..20244)
                     /locus_tag="RJ285_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7383117.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSALGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLINFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(20325..20552)
                     /locus_tag="RJ285_000302"
     CDS             complement(20325..20552)
                     /locus_tag="RJ285_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383118.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(20563..21993)
                     /locus_tag="RJ285_000303"
     CDS             complement(20563..21993)
                     /locus_tag="RJ285_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HDV7383119.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRTSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLIIFNVAHMTDFALPLPGINLPIGPSGALVNVLQDGVYNLGNLTLANIHFENYNA
                     FGTNFNYFVSLGYSNGTNAHTLSAIPAVQSQLEFNEKDGYAVHVGGRYDFTKTLKVGY
                     EFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNIQNIWGN
                     RGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(22157..22639)
                     /locus_tag="RJ285_000304"
     CDS             complement(22157..22639)
                     /locus_tag="RJ285_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7383120.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(22649..23356)
                     /locus_tag="RJ285_000305"
     CDS             complement(22649..23356)
                     /locus_tag="RJ285_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDV7383121.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFARKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            23465..23806
                     /locus_tag="RJ285_000306"
     CDS             23465..23806
                     /locus_tag="RJ285_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7383122.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIVG
                     IIMINIGEVKE"
     gene            23806..24114
                     /locus_tag="RJ285_000307"
     CDS             23806..24114
                     /locus_tag="RJ285_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7383123.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(24132..25724)
                     /locus_tag="RJ285_000308"
     CDS             complement(24132..25724)
                     /locus_tag="RJ285_000308"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDV7383124.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDNYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSLK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYDKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEVKNKMEH"
     gene            complement(25736..25975)
                     /locus_tag="RJ285_000309"
     CDS             complement(25736..25975)
                     /locus_tag="RJ285_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HDV7383125.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(25977..26600)
                     /gene="gmk"
                     /locus_tag="RJ285_000310"
     CDS             complement(25977..26600)
                     /gene="gmk"
                     /locus_tag="RJ285_000310"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDV7383126.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFKDELYFSISSTTRKP
                     REGEKNGVHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQDALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(26597..>27228)
                     /locus_tag="RJ285_000311"
     CDS             complement(26597..>27228)
                     /locus_tag="RJ285_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383127.1"
                     /translation="NKELQANISDFDDLPVVEEQEKEMDFDDLPEDAEFLGQAKDNEE
                     SEEVLEEFAPVVEEDVQDEMDDFTSNLSTQDQIKEELAQLDELDYGIDSDNSSKVLED
                     FKDEPILDDKELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVT
                     KDDNSEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
BASE COUNT         9559 a         4951 c         3570 g         9148 t
ORIGIN      
        1 tcttccattt ggattaaatt cataatgata aatgcaagtt ttaaaaacag ctattttctc
       61 acaaaacata aaataaacat aacaaaaaag cacatcttcg ccataactta aacgctcatc
      121 tattttaatt ttctcaaaac tttttaagat gatatctttt ctaaagcact tcgcccaaac
      181 cgaccagcaa aaatgccttt gtttacttaa aaaatctaaa aattcctttt gattaaaaac
      241 ttcatcttgt ttaaaacgat aaaattgttt ggtttttact ctatgcacaa aggcatcaaa
      301 acaaagcaaa tcaaaacctt ttttcatctc tttaaatgtt atttcacaag catcgagtgt
      361 taaaaaatca tcactatcta aaaacattat aaaatcagaa ctagaatgca aaacccccaa
      421 atttctactt gcaaaagtgc ctaaattttc ttcattttga aagattttta tccttggatc
      481 ttttttggca aattctaaaa ccatatttaa actattatct ttacttttat catcgataat
      541 caaaatttca atatctttta aagtctgatt tatacaactt tgtaaagctc ttgagataaa
      601 atcgcaagaa ttaaaaagcg ggattatgat agaaagttgt ggcatatttt tcctaaattt
      661 tgttaaaata ataaaaacaa ttctatcaaa gtttaggaaa tttatgaaaa tttttataca
      721 ccttcccact tggctaggcg atgcggtgat ggcttcacct gctttatacg ttataaaaga
      781 acattttaaa aatgcccaat ttatccttta tggatctttg gtttccacag cactttttaa
      841 agaatttcct aattctaaaa tcatcataga aaataaacaa tcccgctaca aacaagccct
      901 atctttacgc aaagaacttg gtaagatcga ttttagcttt gcttttagat ctgcgttttc
      961 ttctaagatt atcttacata ttcttaaaac aaaacaaaga tatttttttg acaaaaacaa
     1021 gcacaaagaa gaacatcaag ttttaaaata cctttatttt atagaaaact cacttcacat
     1081 aaaagctcac cttaaagact taaaacttcc ctttaagcta aaatttcaaa gccctcttgt
     1141 cttaaaaaat ggcaaaaaaa ttctaggact caatcctggt gcaagctttg gaagtgcaaa
     1201 aagatgggat gcgagttatt ttgctaaagt ggctttaaat ttcagccaaa gtcatgagat
     1261 tttaatcttt ggcgcaggaa aagccgaaca agaactttgt aatgaaattt atcaaatttt
     1321 aaaagaacaa aacataaaag taaaaaatct ttgcaataaa actaccatca aaaccctttg
     1381 tcaaaatatc gctttttgcg atcttttcat cacaaatgac agtggcccta tgcacataag
     1441 tgcagtttat aaggtaaaaa ccgtggctat ttttggccct acaaaattta ctcaaacctc
     1501 accttggcaa aatgaaaacg caacattagt gcatttaaat ctagcttgta tgccttgtat
     1561 gcaaaaaacc tgccctttaa aacaccacaa atgcatgaaa gatttaaagc ctgaagtgat
     1621 tgtaaaagcg attcaaaatt taactaatat ctaatttttt cttaatgtaa aaagtataag
     1681 atagttttaa aatatttcta taaagtctaa aaatttctct aataattttt ctgtaaaatt
     1741 tagctttcaa aaataaacgt ctagcttgag aaattgaact ttctattcta caatcatgtt
     1801 ttaataataa aggcttttta actatattta acacattatg tttataaaac atatccatat
     1861 aatcatctac ggcatagatc caatttttag catatttaag aaatttcatt gcagcactta
     1921 cttgcagtac ataaccttga gttccagcaa gcttttcaaa acttaaataa tatccaccct
     1981 cgctcaaaaa atacaatctt ttatcgaaca aataacaaag tcttatatat tcatatttgc
     2041 tctttaatag ctcatctata tattcttgcc ccattattaa aaattcatcg ctaaattcca
     2101 catcatcttc taggatgatt ataggctcat caagcttcac acattcttgc caaagtttat
     2161 aatgactagc aaaacaagct ttttctccat cagaaagctc tctgcccagc acccaagaac
     2221 cccaccaagg aaaatgatct ttaaattcca aatgttcttt atttttagca tcaatagctt
     2281 taaagaaaat aaattctaat ttatttttta aactaggatt tttttcaaaa agcttttgaa
     2341 tttgtttttt catatgctct tttctatcta aagaacgctc taaatttatg ataaaaactt
     2401 tcattaaaaa ccctcatcga tgatctgaca aagcgtgtgt atgattaaaa tgtgcatttc
     2461 ttgaattcta gccgtatcat cgcttggcac aacaagatta tgatcacaaa gcttattcat
     2521 cattccaccg ccctttccac taagccctaa acaaagcata ttaagttctt ttgctttttt
     2581 aaaagcttct aaaacattga gactttttcc actggttgaa atgccgatta aaacatcatt
     2641 ttcatttcct aaagcctcca cttgtcttga aaaaacaaac tcaaaaccat agtcatttcc
     2701 tatagcacta agcgctgaag tatcggttgt aagcgctata cctgctaaag ccttgcgttc
     2761 ttttttataa cgcccactaa gttcagctgc aaaatgctgt gcatcagctg cacttccacc
     2821 atttccgcaa attaaaattt taccaccttt tttaagacat tcacataaaa gctcgcctat
     2881 tttagcgatt tgtcctttta aaatttcact ttcttgaacg attttttgat gttcttgcca
     2941 ttctttttct actaaattta tcatttttta tccttaatct tttctataat cttactcgta
     3001 ctaaatcctt cttcaaaatc gattaattca actcttgaaa tcaaatttga acctacaaca
     3061 agcttatctt tataatcagc tcctttaacc aaaatatcag gctttaaaaa gcttataagt
     3121 tctaaaggtg tgtcttcatc aaaaatcact acaaaatcta caaaataaaa agctgccaac
     3181 atacaagctc tttgaaactc tgaatttaca ggacgactct cacctttgag tcttttcaca
     3241 ctcgcatctg agttcaaacc tacaatcaaa acatcgccca atcttttagc tttctcaaga
     3301 tattttatat gtccaaaatg cacgatatca aaacaaccat ttgtaaaaac aatcttttta
     3361 tcattttgtt ttaaaagcgt taaaagctct tctttatttt tgatcttttt ctcaaaactc
     3421 atacttttaa aacttctaat ctcatcaaaa ctcacactca cactacctat tttacttact
     3481 acaacggctg cagcttcatt ggcaagttca caagctttaa aaatttcaat ttcatttgcc
     3541 aaacaaaaag ccaaaacggc aatcacacta tcgcccgctc ctgttacatc ataaacttct
     3601 aaggctttag caggtgcgat ttttaaaccc tcattaaaaa gcgcaatccc cgcttctgaa
     3661 agagtgatga tagaataacg caaagaaaaa tcttctttta attttttaat ccctttttct
     3721 aaattttcac cctctaaatt ttcaaatttc aaagcttcta aagcttcttt tttattaggc
     3781 gtgagcaagg ttgcaccgct atatttacta aaatcactcc ctttaggatc aactaaaaca
     3841 gggatattta aagccttagc cttttttatc acagccttac aaaccttagg cgttaaaata
     3901 cccttagcat aatcgcttaa aaccacagct ttaaaatctt taatcttttc atcaaacaaa
     3961 gcaataagct cattttcaag caaaatctca cttatgtctt cttcatctag tcttaaaacc
     4021 tgctgattgt gcgccataat gcgattttta aaaggggttt tgcgtccttt ttggatcaaa
     4081 aattctcctt ttaaattttc ttgtaaaaat ttcccactct tatcatcacc cacaacacca
     4141 agcgcaaaaa catcagcccc taaacttttt aaatttgcat aaacattcgc agccccgcct
     4201 aatcttttat cttccttaag agttttagct accaaaacag gggcttcagg actgatacgc
     4261 gaacaatcac accaagtgta attatccacc ataaaatccc ctataattaa aattttaggt
     4321 ttttgctggc ttaaaaactc aagcatttac ttccttttca aaaagtcttt ttatctcatc
     4381 taaataatct ttaatcccct cttcaagact aaattttggc tgataatccc aagtttgatc
     4441 tagttttgct tcagtatgga attgataaga ttttacataa ggatttggga tatattcaca
     4501 aggcaaatca gtctttaact ctttttgcaa aatatcaact atatcttgaa aggttcttgc
     4561 tttaccactg cctacattat aaaccccaca ttttgaatca agggcgatta aattagcact
     4621 aataacatct ttaatataag taaaatccct ataaatttga tcacttcctt caaacaatcg
     4681 tggatttttt cctgctaaaa tttgatggcc aaattgcaaa accatagaag cggttttgtt
     4741 tttataaaat tcgccttttc cataaacatt aaaatatcta agtcctacca aatgagcttt
     4801 atcgtaatat tttttcgcta acttatccat catcaatttt gaaaaagcat aaggattttt
     4861 tggttcttca tccttaccta cagtttgtgg actttttgca tcaccataaa ccgaagctga
     4921 acttgcataa ataagctttg cattaagatc tatgctaagt tctataaaat ctttaaaagt
     4981 atttaaattg gtttgcaaaa ccttagtttg atcaaaaacc gtagtgtctg aaattgctgc
     5041 ttgatgaaaa ataatctctg gtttaaaatc ttcaatcttt tttaaaactt tttcatcgtt
     5101 aatatcgcct gcaaaaagtt ctccatcaaa ttcaagtaaa tttttaaaat gcccaaaact
     5161 ttgcaaattt ccattttcaa aagtcgcact actacgcatt ttatcgatga ttaaaatttc
     5221 atgtttttct tgcaaattta aagctagttg cgaacctata aatcctgctc cacctgtgat
     5281 tgctattttc atttaaatat ccttttcctt aaaaaagttc aaaatttctt ttaaattttt
     5341 aaattgtcta aaaaaatcac cttctttttt ttcttcattc actaaaatca aagtgccaat
     5401 atcagcattt aatcctgctt gcatatcact tagattatct ccgataaaga tagaattttt
     5461 catatctaaa tcaaactcat cttttgcttt taaaagcatg cctgctttag gtttgcgaca
     5521 ctcacaacct tctaaatgcg gacaatgata aattttatca atttttatat cttgtttagc
     5581 aaattcttta agcatataat cacaaagctt aaaaaaatca ctttccttgt aatatcctct
     5641 tgcaatgcct gattggtttg tcgctataaa aagcaaataa tttctagcca aaaaatatct
     5701 acaaagttca aaaattccat cacaaaattc gaaatcttct attttataaa catatttttt
     5761 atctatatta atcacaccgt ctctatctaa aaataatgct tttgttttca taaaaacatt
     5821 ataatatagc ttttttaaaa agaaaataaa cattatcttt aatttcttaa gatttttatt
     5881 aaaaataaag atatataata cctagcaatc taatttttac taaggagaaa acaaatgaaa
     5941 aaattattag tagtttctgc tttggcatgt cttggtgttt ctgcttttgc tgcagatggt
     6001 gctacacttt ttaaaaaatg cgcagtatgc catggtgcaa atgctgacaa agtttactta
     6061 aacaaagttc cagctttaaa aactctttct tctgctgaaa gacttcaata catgaaagaa
     6121 tattcagaag gtaaaagaaa tgcttatggt caaggtgcga tcatgaaact taaccttaaa
     6181 ggtttaactg aagaagattt taaagctatc gaagctcata ttgaaacttt aaaataattt
     6241 ctaaaaaagg cttttctttt taagaaagcc tttttttatc caaagcttct tttttacgtc
     6301 tttctaattc tatagcatca cgtaaagaat cctcatcatc atttaaagta gtaaatttat
     6361 aatcatcatc aaattgctta tttttaatcc cccaaagcaa agttgccaaa atgataaaaa
     6421 acgctaagat agaaactcct atcatcatca tgattatact attcattctt taatccttaa
     6481 agcatttaaa acgactatta tactactaaa agacatagaa atagcagcaa ataaaggatt
     6541 tatcataccc aaaaaagcca aaggtatggt gcaagcatta taaaacaaag aaaaagcaag
     6601 attttgcttg ataattttaa aggtgttttt agataatttg atggcttttt ttaaagaaag
     6661 caagtcattt ttcaaaagca aaacatcact actttctata gctagatcac ttccttctct
     6721 taaagtcatt gaaacacttg cgtattttaa agctagtgca tcatttaccc catcacctac
     6781 aaataaaact ttgtaatttt tacttaaatt ttctatagtt ttcatcttat cttcaggcaa
     6841 acaagaagct tgataatttt gaatttctaa ctttttagcg attttttcca ctgctttttg
     6901 atgatcgcca ctgagtatca ttaattcttt cttttctttt ttaagataag cgataagctc
     6961 ttttgcacct tctcttaaaa cactatcaaa ctcaaaaaaa gctaaaattt taccttcctt
     7021 ggcaaaaata aaatgcgtat tatcaaattc tttagccaca ataccctttt cttgcaaaaa
     7081 tttagaactt ccgcctaaaa gcaacccttc atttaactca gcacttaaac ctttagcttg
     7141 aatactcgaa tgctttttaa aatccaaatt taaatcctta gctccttttt gctttaaata
     7201 taacacaata ttttgagaga taggatgttt agaaagtttt acaaaattat aaagctcgtt
     7261 taaatcaagc gctttatcta aaaaaacctc tttaagttca agctctattt tggttaaaat
     7321 acccgtttta tcaaacacca cacaatcaca tttgcttaaa tcttctatca cgctagaact
     7381 tttaaataaa atatgctttt ttaaagccct acctaaagcc acaagattgc tcactggcgt
     7441 tgctaaagcc aaagcacaag gacaagcgat aatcaaaact gcaatcgcat tgactaaaga
     7501 aatttcgaaa ctctcttctt tataaaaaaa ccaaaaagca aaacaaataa aagcgatcaa
     7561 taaaaccgtt ctagaaaaat aagccaaaag actattgacc aaactttcaa gttttgcttt
     7621 tttagaactt gcaagttcta aaagctggat aatttgactg agttttgaat ccttgtaaag
     7681 ctttgttgct tcatactcca cacttccatc aagcactata caagctgaaa aaatttcatc
     7741 ttctttttgt atgagttttg gggtattttc tccatttaaa gaagaagtat ctacgctcat
     7801 ttcaccactt ttacaaatcc catcgattaa aattttatct ccagttttaa gcaaaattct
     7861 atcccccaaa caaacctttt gcacttcttt agagacaaat tctttaccat tgaaaactaa
     7921 aacttcattt tgcaaaaaat cattaagccc atctatagta tctaaagcac gctttttgct
     7981 aaacatctca agatatttac ctataaaaac aaagcaaatt atcatcgcca cagagtcaaa
     8041 atacacctcc cctaccctaa aaaacatggc ccataaagaa taaacataag ccaaactcgc
     8101 tccgctaatc accaatacat ccatatttaa actatgcatt tttaaagttt taaaagcact
     8161 tttataaaaa tgagatcccg tataaaaaag cacaggagaa caaaggataa attcagcaaa
     8221 atttaaaata tccttagtgt ccttatccat accgctaaaa aatcctgcgt attttgccac
     8281 tgctatccac atgatattca tcacacaagc tatagccaca acaagcttag aataaaattc
     8341 cctttttagt aaatccgctt tttttgaagc cttgctcgca tcataagcac tcgctttata
     8401 gcctatgctt tcaataagtc ttaaaatttg caccaaagaa atgctttgct catcaaaaac
     8461 aatgcgtgct ttatggttta aatgattaat atcaagttct aaaattcctt cttgtttggt
     8521 taaaattttc tcattaagcc acacacaagc tgcacattct ataccgtgta tcatgagata
     8581 aatttcacta aatccttctt tggttttagt gataaactca tcataatttt tcatttcatt
     8641 ttgaaaattt acagggctta aagtttgatt tccaagcttt tcataaaact catctaatcc
     8701 actttcatgc aaaatttccc aaacgctctc acaaccttta caacaaaaaa ttttaccctt
     8761 atactctatc atttgggctt gtttataatc aagtttgcaa tgttcacatt tcataatcat
     8821 tctttaaaaa aatatttttt ataattataa acaaatttga caaaaagtgc atttttttat
     8881 taaaatcaca ttttacaaaa attattctgc taaatcttac gaggacttat ggaaaaagaa
     8941 aaaaaacaac atcaaagaac ccacgttcca gtggaaggtt ataaaatcga agaattaaaa
     9001 ttattagatt tagaaaatct agttaaaatc gctaatgaat gtgaaatcga aaacccaaga
     9061 gaatttcgcc gccaagaact tatttttgaa attttaaaag cacaaacaaa aaaaggcggt
     9121 tttatacttt ttacagggat tttagaaatt tcttccgaag gttatggctt tttaagaggt
     9181 atggactcta atcttagtga tagcgttaat gacgcttatg tttcaaattc acaaattaaa
     9241 aaatttgctc tgcgtgtagg cgatatcgtt acaggacaag ttagagaacc aaaagatcaa
     9301 gaaaaatact acgctctttt aaaaatcgaa gcgatcaatt atctgccttt acaagaagcc
     9361 aaagaaagac ctttgtttga taacttaacc cctatttttc caacagaaaa aatcaaactc
     9421 gaatacgatg cgatgaagct tacaggtcgt gttttggatc tttttactcc tataggaaaa
     9481 ggacaacgcg ggcttatcgt tgctccacca cgcacaggta aaacagagct tatgaaagaa
     9541 cttgctactg ctattgcaaa aaaccaccca gaaatgcatt taatcgtact tttagtcgat
     9601 gaaaggcctg aagaagttac cgatatgcaa agatgtgtaa aaggcgaagt ttttagttct
     9661 acttttgatt tacctgctta taatcatgtg cgtgtagctg aactcgtgat agaaaaagcc
     9721 aaaagaatgg tagaaacagg caaagatgtt atcatcttgc ttgatagtat cacaagactg
     9781 gcacgtgctt ataacaccgc aactccaagc agcggaaaag tcctaagcgg cggggtggat
     9841 gctaatgccc tacacaaacc aaaacgcttc tttggtgcag ctagaaatat agaaaatgga
     9901 ggctctttaa ctatagttgc tacagcttta attgatacag gttcaagaat ggatgatgtg
     9961 atttttgaag aatttaaagg cacaggaaat agcgaaatag ttcttgatag aaatatcgcc
    10021 gatagaagaa tttatcctgc gattaatatc atcaaatcag gaacaagaaa agaagaatta
    10081 ctccaaggcg tagcaaatct tcaaaaaatt tgggcgatcc gttcagcgat ttctcaaatg
    10141 gatgatgttg aagcgttgaa atttttatat tctaaaatgc ttaaaaccaa agacaatgta
    10201 gaacttttat ctataatgaa cgagtaaaaa atgcttcaag ctttagcgat taaatacaga
    10261 ccaaaaactt ttgatgaact tataggacaa aagacagtta gcgtaagttt aaaatacgcc
    10321 ctaaatcata atcgcttagc tcatgcttat cttttttcag gacttagagg aagtggaaaa
    10381 acttcaagtg ctagaatttt ttctcgtgct ttagtttgcg aacaaggacc aagtgatact
    10441 ccatgtggca cttgcaaaca ctgtcttgca gcacttgaag gcaaacatat agacattata
    10501 gaaatggatg ctgcaagcaa ccgtgggctt gaagatatac aagccttaat cgaacaaacc
    10561 aaatacaccc cttctatggc aagatttaaa attttcatca ttgatgaagt acatatgctt
    10621 accccacagg ctgcaaatgc gcttttaaaa accttagaag aacccccaag ttatgttaaa
    10681 tttatacttg caaccacaga tcctttaaaa cttccagcta ctgtgctttc aagaacacaa
    10741 cattttcgct ttaaacaaat tccacagagt gaaattttaa atcatcttaa agaaatttta
    10801 cttaaagaaa atgttaaatt tgaagaagaa gctttaaaat ttatagcaag aagcggcaat
    10861 ggatctttaa gagatacttt aaccttgctt gaccaagcta ttattttttg tcaaaatgaa
    10921 atcagcatta gtaaaattac agatatgtta ggctttttag atcctcaaaa aatcaaaacc
    10981 ttttatcagg ctatcttaac aaaagacaag gaaaaagttt ttgcgtattt agaggaatta
    11041 caagactatg aagcctcaag cgtgattgat gaaatgcttt tttatttaaa agaaagtttt
    11101 tttgcaaaaa gtacagaatt ttctacttta atttatgaaa gatttttccg tattttatca
    11161 aaagctaaga atatgctttg cgatgatgat ggctttacgc tttgtgttat ggcttttatg
    11221 atgatggaag caagtcattt aaaagaaatt gacgcacaaa tccaagaaat caaacaagaa
    11281 aatatgacaa atattacacc taggatcaca cctgctccta tcatacctaa tcttgagaaa
    11341 aaaatagaaa aaaatgctta tgaaatcttg cttgatagta tttatgatag ggattttaat
    11401 cttgcagaat gctttaaaca aagcacaaaa tttattagtt ttgaaaacaa tactttaaat
    11461 ataagctcaa acgcacaagg acaaaatcgc gatacactca ataaaggttt taaactcata
    11521 caagaacttt ttaaagctaa atttggggaa aatgcaaaaa ttaatgtgca aaaagcacta
    11581 acaattgatg aaaataagct tcaatcctta actcaagaat taccaaacaa tgaaaataaa
    11641 aacatagata ttcaaagttc tattaatatg cttaaagaag gggccaaaaa atttgaccca
    11701 caagaagatc ttaaagaggc tcttaaagat tgctttggca atcctcaaat ccaaaatata
    11761 gattaagata ttgcttaata ataataatat aagtaatctt tagctacaat atttttttat
    11821 aaattattta gaaagaagaa taaaaatgca aagaagagac tttcttaatg gcatggcctt
    11881 agctgtcgtt gcaggcatga cacccttaca attactctat ggaaaagata gtaaaattga
    11941 agactttaca aaagaatact atcctcccaa tctacttgga ttaagaggta gtaataataa
    12001 aagctataaa tacgctcaca tgttaagaga tggagataaa tttggtttta gcagtataaa
    12061 acctaaagaa aattatgatt tagtaatcgt tggagctgga atcagtggac tagctgcagc
    12121 ttgtttttat caacaaaaat ttggggaaaa taaaaaaatt ttaattcttg acaatcatga
    12181 tgattttgga ggacatgcta gacgcaatga aatacaactt gatgaaggaa ccattttaag
    12241 ttacggagga agtgaaagtt ttcaatcccc aaaagcactt tattctaaag aagtaatcga
    12301 actcttaaaa tcacttggag tcagtataga tgaattagca aaacgatttg atgtaaattt
    12361 ttacccagat ttaaaattaa gcagaggggt atatttttca aaagaaaatt ttggtgttga
    12421 taaagttgtc aatggaaatc ctagaaaagt tatttgtgat gatatcccag attctaaaaa
    12481 taatggaaaa agtattgaaa attttattaa agattttcct atgacttcta aagataaaag
    12541 agagttaata tcccttttta aaagcaataa agactatctc aaaggtttaa gcaaagagga
    12601 aaaagaagaa tatatggcta aaacaagtta taaaaaattc ttagaagaaa aagtaaaatt
    12661 atcccaaaaa gctataacat ttttcgaggg aatgacggat gattttttag ctttaggtat
    12721 agatgcaatc tcttgtgagg atgcaagaat ttctttttta cctgggtttg ataaattagg
    12781 acttgatcct atcgaaggag aagctttggc cgaaatggaa gaaccttaca tttatcattg
    12841 cgccgatgga aatgctacag tagcaagatt aatggtaaga aagctgattc ctacagtgtc
    12901 acaaaaaggt aaagatatgg acgatatcac cttagctcat tttgactact caaaacttga
    12961 tgactctaat aataaagttc gtttacgatt aaatagtact gttattcatg tagaaaatac
    13021 aaaaaatgga accttaataa gctatatcaa tcaaggaaaa aaatatagaa ttaaagcaaa
    13081 aaatgttgta atggctaatt ataacaatat gattccttat attatcccta gtttacctaa
    13141 agaacaaaaa gaagccttaa gtaaaaatgt aaaaacatct ctacttcaca ccaaagtaat
    13201 tataagcaat tgggaaccat ttattaaact aggggttcat gaaatttatt caccaaaaat
    13261 gccttacgct agaacaaaac ttgattatcc ggttgatatg ggtggctatc atcatccaag
    13321 agatccaaaa aaacctatat gtattcatat ggtttgctct cctttagctc tagccaatat
    13381 tcaaggtatt gatcttgaag ggcttgatgc aagagataga gccagagtag gtagaaatct
    13441 attgtttacc atgagttttg aagaacatga aaaaatcatt agggggcagc ttcaaggaat
    13501 gttgggaact gcaggtttta accacgaaaa agatatatta gcaattgttg taaatcgctg
    13561 gggacattgt tactcctata cagaaaatag tctttatgat gatcctaaaa ttgcagagca
    13621 aaccaggctt atagctagaa aaccttttgg caatattgtt atagctaatt cagattcaga
    13681 ttggtcagct tatatgcatt cagctatcga ccaagcttat cgcgctatta atgagatcaa
    13741 ggcttagatt ttctaagcct taaagaatta aacactacag taacagaact aaaacacatt
    13801 gcaagtgctg ctatatgagg acttaaagcg ataaaaggta caaatcctgc tgcgatggga
    13861 atgcaaagta cattataaat aaaagcccaa aaaagattta gcttaataat actgcgtgtt
    13921 tttttagcaa gcttaaagca tttaaaaata gctgataaat catcttttat caagataaaa
    13981 tcccctgttt tttttgcaag ttcatttgcc tttgaaaaac ttatactcac acttgcagca
    14041 gataaagctg ccgcatcatt gatcccatct cctacaaaaa gagttttttc aaatttttga
    14101 atgatttgta gtttttcttc actcttaagc tgagcgtgaa attcgtctat ttgtaattct
    14161 ttggctattt tttctacatt ttttacatga tcgccgctta aaataaaagt tttaagattt
    14221 tgctttttta aatttaacac aagctctttg gctccatctt ttaaagcatt gcttaacaaa
    14281 acaccgccta aacacttttt attcttagca aaatacaccc taatatattc tttaaaagta
    14341 tcaaaaaaga tatcactttc ttttgtgtca atttcatttt cgtgcaaaaa cttcgcacta
    14401 cctgcgagat aaatatcatt atcttctttg tattttatac cagaacccac aatcactctt
    14461 ccctcaccct ttaaatcaaa aaaatgatct ttatgtaaag ccttagctat aggatgagag
    14521 cttaaacttt caatttgaca taatttatca aaatcatctt tagaaagatt gtgtttaaaa
    14581 atactcaaat tttcctttgt taatgtaccc gttttatcaa aaaaagcata cttaactaag
    14641 gctaattttt ctaaagcagc aggattttta ataagaatga aattttttgc cgcatttgca
    14701 cttgccacaa ccaaagctat aggcgttgca agacctaaag cacaaggaca agagatcaaa
    14761 agcacagcac aagagtgtaa aaaagctgta tttaaatctg cttttagcac ccaaaaaaca
    14821 aaaactaaaa aagcaaaaaa tattataccc cctacaaagt atttagaaat ttgatctgct
    14881 aaatttgcca aaggactttt gatacttcct gcttcaaaaa ctagattttt gatttgttct
    14941 aaagtactat ccatggcctt tttgtttgct ttgatcctta aagcaccatt taaaactact
    15001 gctcctgctt gaacttcatc gccttctttt tttaaaacag gcaaaaactc cccatttaaa
    15061 aaactcatat caagctctgc actccctaaa agcactactc catctgcaac aatgctttct
    15121 ccttctttta ccaaaagtac atcgccactt ttaacaaaag aacttgaaat ttctttgata
    15181 ctttcatctt caagcaaaat ttttgtcttt tttgtgtcta tattttctaa aattctttga
    15241 taatcttgtg ccttaaattt agccttactt tcaagatatt ttcctaaaag cacaaaggaa
    15301 ataatcatca ttgcaccact aaaatacaaa tcttcttctt taaaaatttg caaatacacc
    15361 aaaaaagaat acacaaaagc actcaaagtc cccaaagcta caagggtatt catatctaaa
    15421 tttttgcttt taaagcctaa aaaagcatga gaaaaaaagt ctctcccaca ataaaatatc
    15481 ccaaaaaaac tcaaagccat ttggatattt tgagaaaaag aacttttaac aaacatttca
    15541 aaatacataa taatcacact caaaactata cttaagagca aattttttct taattctaag
    15601 tgtttttttg ccttgtatgc gttcaagctt tgttcatctt ctaaaatttc aaagcctaaa
    15661 tttttaattt ttgcgatgat atccttgcgt tttttttgat cttcaagtaa aaaaaccccg
    15721 ctagaattca cataagaaac actagcatct ttaacaccat caattttttt acaagctctt
    15781 tctatagcat tagaacaatt aacgcaagtc attttgccta tttttatacg caattcttcc
    15841 attataaacg ctctacaatc tcaaaaccta aatcttgaaa ttcttttgta aaatttgata
    15901 cttgattttc ttctaaattt aaacttaaaa ttttttgctc caaatccact tctatatttc
    15961 caaattcatc ttcaagagaa tttttgatca aatttacaca attcatgcaa ttaacatttt
    16021 ttactttaaa tttcattttc actccttata ggttgtatgg taatatgccc gatttcaaat
    16081 tcatgcaaca acttatgaga taaatcctga gatagttttt caaattcctt tagattgcaa
    16141 actcttactt ttaaatgcat agaggctact agcattttat tagtgatttg agtaatatgc
    16201 aaatccacta cctcatccac actaggattt aaaagcaaaa cttgtcttac tttttctata
    16261 tccacaggag aactttcaag caagacatta gcactttgtt taagcaagat aatcgcccat
    16321 cttaaaagca agattgataa tacaatagct aaaatcgtat ctatataaac aatatcacta
    16381 aaatacacca caatcccacc tataataacc gctaaagaac ccaataaatc gctcatcata
    16441 tgcaaaaaag cggacttcat attgacattt tctaaatttg cacccttaaa catcatcaaa
    16501 gcattaatcc catttaccaa aaagcccaaa atagctacaa ttatcatggt tttagcgtca
    16561 atttcttttg gattgataaa tttttctata gcctcataaa tgataaataa agccgataaa
    16621 ataatggtta aagcattgat aaaagccact aaaacttcaa gacgaaaata cccaaaggtc
    16681 ttttgatgat cttgccattt ttctacagct ataatggcta aaaaactaag agctaaggca
    16741 aaaacatcag aaaacatatg caaagtatcg cttaaaagtg ccaaagaatt tgaaaggatt
    16801 gaataaataa attgcacaag catcatagaa aaagtcatta aaagagaaat ttttaaaatc
    16861 tttttatcca cactccttgc atcggcatgg gaatgatgat gttcatgaga atgttcttcg
    16921 tgattatgat gacaagattt gttagctaaa ggctcgtgtg ataaaaattt atacatctta
    16981 tatccttttt tgcttgacat tttaagatat taagctaaaa aggatataaa tatttgttat
    17041 ttttataaaa attaaaagtc aaaaagctcg cctagccaac tttctttctt tttcttttta
    17101 taatagtcat tgtgctgatg ataagctgag tcattatatc ttgactcttg tcttggagct
    17161 tggttaaaat ttgctgtatt agggacactg cgttctatga ttttgtcaag ctctccacga
    17221 tcaagccaaa cgccacgaca ctttggacaa taatcaatct caactccact cctatcactc
    17281 ataaccaaat ctacattaca aactggacat aacatacaat accttttttt aaatttttga
    17341 cttaaaatta taaaaagaaa tattaaacaa atttacaaca agttttaatg tttttttgca
    17401 tgtctagtca tcataaaact ttgttcaaaa aatataagca aggtaacact cactcctata
    17461 gctagagcca aagtcacaga aacagttgta aaaaaataat caaaaaattg aactaaaaat
    17521 tcagacttag ccttcaaatc atcactgcgt ataaaagaaa taagatacaa aatcgcttta
    17581 taagcataaa ttccaggtat cataggaata agagcaggga aagcgataat ttcagcagga
    17641 gttttgatga tttttgctaa aacaattcct aaacatccta tgcaaaatga agcaacaaaa
    17701 gttgcaattg ctaaagtttg aaaatgaaaa tattccacca aggtaaaacg aagtccatgt
    17761 gcaattgccg ctaaaagagc agataaaata agggttttta aaggtggatt acaagcataa
    17821 gcaaagccaa atcccgccac agcagcaaaa aacatatctc ttaaaataaa ttcaatcatc
    17881 ttaaaatccc aaaatccgaa atactaagcg tcatgtaaat tccaagtgct atacaacaaa
    17941 tcaaaatagc cacgctgata atacggctaa gccccattaa aatatgatct tttaatatat
    18001 caatcacaga atttataaaa aatactcctg gtataagata caagatacta gaacccaaag
    18061 ccacatcaga agtattggta tatcccatat ccagtccaaa aaatacaaac cacgatgaga
    18121 taaaagaaca aaggatgtat tgaattctta aatcaatctt tgctttagtt aaaatatatc
    18181 ttaacaacaa tcccacaaaa gttgcaaaaa atactaaatt tccagcacca aaatcaccac
    18241 caaaaagcct acaaaaagct gaatttgcca tagaaacaaa taaaagatta agcaaataag
    18301 aatgcttttt ttgttgagaa atttgctcaa aaacgacttt tgctttttca agatcgtatt
    18361 tgtgatcata tatagcccag cttaaagcac ttaaatcaaa aataagctta aaattaacat
    18421 gggcatgatg attgggtata acataagttc tttgaatgga gttatcatcc atatctacaa
    18481 catttaaagt aatatgatga aaaaagaaat tgatatttat ctcatagcca taaacctcag
    18541 ctattcttcc tacgcatttt gccaccctag ctgtataagt tccagcacct agcaaagttt
    18601 tagtatatac gattaaaaaa ttagttaatc tttgtatatc aggtttttcc atattttaat
    18661 aatctttgat tgaatttgtt ataattatag caaattttaa aataaataag gagaaaaaat
    18721 ggcaaaaatc ggtatagttg gtttaggtta tgtaggagct gctagtgctt atagcatagt
    18781 tactcaagga atttgttcag aactttactt atatgatata aaacaagatt tagctctagc
    18841 tcatgcaaga gatttggaag atatgtcagc cattcatttt tcttatacaa aaatttttca
    18901 tgtgccaaat ttagaaaatt tagcttcttg cgatattatc attttagctt ttagaaaaga
    18961 aagcttaaaa gaattaccta gtcgcttggt agaacttcaa aacaatatcc tcgaacttaa
    19021 agacattgtc ttaaccttaa aaaatgctaa ttttaaaggc aaatacatcg tcgcaacaaa
    19081 tccaaatgac accataactt actacactca agtattaagc caattaccta aaaatcatgt
    19141 ttttggtagt ggaacaaatt tagatagttc aagacttaag aaatttttag ccaaagattt
    19201 aaacataaat tcaaaagata tttttgcttg tatgattggc gaacatggag attctcagtt
    19261 tgcagcactt tctaatgcaa gcgttttagg acaaaattta ttagattttt acaagcaaag
    19321 attaggcaaa gatttagaca tacaagaact cgaaaaagcc gtgattagtg agggatattt
    19381 catctatgaa cgcaaaggaa gaacagaatt tggcatagga acttcttgtg caaatttagc
    19441 caaagccatc ctagaagata gaaaaagttt acatcctgta agtgtggttt ttgatgatat
    19501 agctttttca atgcccgcta tcataggaaa agatggtata gaaaaggttt ttgaattaaa
    19561 attcaatgaa aaagaaaaaa taaaattaga aaattcaaaa caacaaatca aaaacgccat
    19621 acaaagcgta aaagataaaa tttaagcctt tttaaaaggc tttttgattt taatataaat
    19681 taaacttgct aaaatcacaa aaacaattat aataattaaa atttgagtta aataagtttt
    19741 aatcaactct tcattttgtc ctatataata acccaaaaat acaagtatag ccacccaaat
    19801 agcgctacca agtgcagtaa aaagtataaa atttataagt ttcattttta ccaaacctgc
    19861 aggcatagaa atatactgac gaatccctgg caaaagacga caagtaaagg ttgaaaattc
    19921 cccatgtttg ttaaaaaatt cttcaaattt agcaaatttg acttcgttta taccaaaata
    19981 cttaccccat tttaatacaa aatttttacc ccaaaaaaag caaatataat aattaatcaa
    20041 agcccctaaa gcagaaccta aagtcccact aagtatacaa agagtgatat caagttcgcc
    20101 tttatgtgcc aaatatccag caggtatcat aacaacttca cttggaaaag gtataaaaca
    20161 actctctaag gtcattaaga taataatacc caaatacccc caagcgctag ccgtctcaac
    20221 aataaaagaa atgatttctt gcatattagc cttatttgaa gaaaatttta aaaaattgta
    20281 gcttaaaaga ttaaacagta aaaagcggtt ttataccgct ttttttattt acctgcaact
    20341 gaaacttgat ttggattgtc cgctgcacga gcgatcatac actcttttaa aacagcagca
    20401 tcagctggat cgctaacttt tttattaatc cagcgttcaa cttgtttcat tgtttttgac
    20461 tctggctctg gagcttcgta ttttgccatc aaacttgcac aatcagccaa agcaatgata
    20521 ggtaataaac ttgcaaaaag tatttttctc atcttttgct ccttagaatt ttacattata
    20581 cattaacatg atattatcag ctcttgcttt atcttttttc gctccaccaa atggtaagcc
    20641 acgattaccc caaatatttt ggatattagt ataacttaag cgtaagaatt gatatctatc
    20701 aagttgataa atcacataaa aatcatgtgc tgttcctctt gtcattctta tattaagcgg
    20761 atcgttgata cttggacggc tcatagtata ccagtatcta cttccccaga agaactcata
    20821 ccctactttt aaagtcttgg taaaatcata gcgtccacct acatgcacag catagccatc
    20881 tttttcatta aattccaatt gagattgcac agcaggaatt gcacttagag tatgtgcatt
    20941 tgttccgtta gaatacccta aagatacaaa ataattaaaa tttgtaccaa aagcattgta
    21001 attttcaaaa tgaatatttg ctaaagttaa atttcctaga ttgtaaacac catcttgtaa
    21061 aacattaacc aaagcaccgc ttgggccaat tggaagattg attcctggaa gtggtaatgc
    21121 aaaatcagtc atatgagcca cattgaagat aataagatta tcccccatac cttctatagg
    21181 aagctctcct tctactgcag catagtaaag atttgcatca gcatcttttt gatcgctcat
    21241 ccagtctctt accttaccct cttcatccca ttgataagtt ttaccataag ctgcacggat
    21301 ggctacctta tgatcttgca aactttcagg tttataagtg attactgctg catcacctag
    21361 agcattaatc gctaaggctg gataagtgga ttgtcttaaa gcattgtttc taagattact
    21421 tcctgggcca tcggttcctg gctgtcttcc tatggttgca atccactcag gtgtgatata
    21481 gtagtcaaga taagctctat ctacataaag tacaggccca cttgttcttg tgtttcttcc
    21541 tgcatctaag tcaagtggac ttccactcca acccatttga gaccaatttt tagccataga
    21601 taaacgacca tagaatttgg ttttatcatt aatatcagca ttcatattta aatgaagctc
    21661 attcatccat ttgttattag cactataatc ttgtccgcta actttatagt ttgtatttga
    21721 aactgctgtt gaaaactcaa gtccaaattt aaccttgctc aaagcagctt ggaattctgt
    21781 ttcatcggcc ctatcattaa gatcagcaag ttcagctttt acagcttcat tttgcttagc
    21841 ttgagcttcc ctttcttttc tgatttgtgc aagttcagct tgaatttgtg caagctgttt
    21901 ttgaagcttg gttatctcat catctgtatt tttagcaaaa agtgaagatg aaagaagaca
    21961 agcacttaaa ataagtgaaa acttagtttt cataatcata actccttgta attttgttac
    22021 atttagcaaa ttaaaattgt gattatagaa aaaaaagttt aaaaaaaaat tatacattaa
    22081 tcatttttag ctagtcaaac ttatgactag ctttgtaaat attgtagttt taaaaaagtt
    22141 ttaaaatttt aaatttttaa attttatcgc aaatttttat gtctaaaatt ttatctcctt
    22201 ggcgtataga gtctaaaact tctaaacttt cttcatcttt tggatcaatt tgcccaaaaa
    22261 cagtatgaac cccatctaaa tgagcttgag ggctgtgaca aatgaaaaat tgagaaccac
    22321 ccgtatcgcg tcctgcgtgt gccatagata aggttccacg ctcatgttta tgctcttgat
    22381 catcacattc gcaaatgatt tcatatccag gcccacctac accattgccg tgtggacaac
    22441 ctccttgtat gacaaaattt gggatcacac gatgaaaatt taaatcttta taaaatccct
    22501 cattagccaa agtagcaaaa ttacaaaccg tttgcggagc ctcatcgcca aaaagtttta
    22561 atttcattgt gcctttttca gtttctataa gagcaaattt gtattcattt actttgcttg
    22621 tgtcgattgt ttttatcatt atttctcctt aatctatatt tgtataaaca gcttgaacat
    22681 catcatcatc ttctaactta tctaaaagtt tttctatatc gctaagctgt tcttcgctaa
    22741 agcttacagg attgtttggt atatactcaa gtcctgcttt tttaagaact aaacccttag
    22801 tctctatagc agaacttagc tcaccaaagg cagtataatc accgctaatt actaactctt
    22861 cttcattttg ttctaattct tcaagccctg catcgatcaa atcaagttct aattcttcta
    22921 aatctcctgc aaatttttca agatgaaaaa ccgcttttct agcaaacata aagcctaaag
    22981 atccattttg taaaacttct ccaccatttt tgctaaaaat ggctttaaca ttagccacgg
    23041 tgcgcgtagg gttatcgctc atacattcaa ctataaccaa agctccatgt gcagcttttc
    23101 cttcataatg aatgttttta atatctgcgc tatcttttcc actcgcacgc ttaatagccg
    23161 catctatatt atcttttggc atattatttg cttttgctgt ggctatagca cttcttaatt
    23221 ttggattcat atcaggatca gtgccacctt ctttagcagc tacttgtatg gctttagcaa
    23281 gcttaggaaa aagcttactc attttatccc atctagcctc tttagaagct cttcggtatt
    23341 caaacgctcg tcccataaat tctcactttc tttaaagatt tttaaactta aaagtataaa
    23401 ctaaaaaggc taattaaagc tttaaatggt atgattttac catttatttt tagggagaag
    23461 ctttttgaat atcgcaaaaa aagaactttt tgttgcttgg tttttcttga ttgctgctat
    23521 tgtatttgaa gttttaggta ctagtttttt aaaaatggaa aatcaaattt taggctatat
    23581 atttatggct ttatttatag ctttttctta tttttttatg ggcaaggcga ttaaaaaaat
    23641 tcaagtaggc atagcctatg ctgtatggga acttttaggg attattctta tacttttagt
    23701 ttcttttata gtttttaaag agagtttaac cttaactcaa attctaggca ttattctttc
    23761 tatcgttgga attatcatga ttaatatagg cgaggttaaa gaataatgta tatttttatt
    23821 attgttctat cggcattgtt agatatcgta gcaaatttat tgctaaaaaa atcagatggt
    23881 tttaagaata aaatttgggg cttagctgcg attgtcaatg ctatacttgc tttttttcta
    23941 ctttcttttt ctttaaaata tgttccttta agcatagctt actcaacttg gggtgctata
    24001 ggcatcatag gaacttgtct tggtggatgg attttatata aagaaaaatt aaacaaaata
    24061 ggaattttag gtatcattat cgtgataata gcagtatttt tgctaaatta ttaaaacagc
    24121 aaaatgctgt tttaatgttc cattttgttt tttacttcaa tacccattaa agaaaatgcg
    24181 gttttaatac taagagcaac caaagaaaat aatttaagca aatcattttc atttgcagag
    24241 cctacaactt tattttcatt gtagaattta tgaaaatttg cagctaaatt tttaagataa
    24301 tcaggaattt tttgcaaagc tctagcctca aaagcatcgt ttaaaacagc ctttaaattc
    24361 aaagcttcaa aaagcaaatt tacgccatct tgatttaaac tttgtaaatc agctttcatt
    24421 acatcatcga tttttttacc agctttagca aacacttgat gaattctagc gtgtgcatag
    24481 ttgatataat acacaggatt agaactatct tctttttgca aatcactaat atcaaattcc
    24541 aaatgcgtat cgcatttttt gctcaaaaag atataacgca aagcatcact tcctatctca
    24601 tcaaccacat cgctcatcaa gataaaattt cctgctcttt tactcatttt ataaggttct
    24661 ccatctttaa gtagggaaac catttgtgct aaaataatct caagattatt agagtcaaat
    24721 cccaaaaatt ccatcgcagc tttcattcta gggatataac catgatgatc tgctccccaa
    24781 atattgatac atttatcata gcctctactc attttatcct tatgataaac tatatccgct
    24841 gctaaataag tcccacggcc atcttcacgg ataataacac gatctttttc atctcctttt
    24901 aaagacgaag caagccaaat tttaccttct tgctcgtaaa ttcctttatg ctcttttaaa
    24961 gattctaaag ttgcatttaa agcatcataa tacgatcttt cgcttacata gttgtcaatt
    25021 ttaatctttg cttgttctaa attttgttta atcaaaacaa gcattttatc ttttgcccaa
    25081 tcagccaaac tagggatatt ttcttcgcta aaaaattctt taccaaattt ttcaaaagct
    25141 tcttttgcta aatccgctat atactcgcct ttgtaatatt gctctggata ttcaacattt
    25201 tcatgaagta tactttcttt cacacttagt aaaatagaaa gccctagtaa ataaatttga
    25261 ttacccgcat cattgacata gtattctgta ttaaatttat agcccaaatg tcttgcaagt
    25321 cttgttaagg tgtctccaaa aacagcgcct cttgcatgtc ctatgtgtaa aggcccagta
    25381 ggatttgcac tcacatattc aagcaaaaaa ctttcttgtt ttttttctcc tttagtaaaa
    25441 tcatttggat ttgttaaagc ctgatttgca agttcattta aaaaagtttt ggaaattcta
    25501 aaatttaaat acccatttac agcttcaact gattcaaaac aatcatgatt ttgaaatttg
    25561 ctcgctaagt cgctagcgat caacataggg gattttttta attccttagc cagtgaaaaa
    25621 gccaaagggg tagcaaaatg tgctaaattt ttatcctttg gattttcaag cgcaaaatca
    25681 cactctaaaa tctttttaat ttcattaaaa ataatacttt tcaaaagact aaaccttaag
    25741 ctttttttgt ttcgtctata cttgcatcag catttgtatt attagttgtg tttttatttt
    25801 cttctatttt ttgagtattt tttgctactt catcatcatt attcatttca tctttaaaag
    25861 ttttaatacc tttacctaaa ccctttgcaa gttctggaat tttttttgct ccaaaaagca
    25921 atacaacaat caataaaata atcaaccaat gacttggact tgaccaacca cccattttat
    25981 tctccttcat tccaaatatt ttgaatttgc cctagattct gccctttggt tctaaattta
    26041 tgggcgatta aaatcgctcg caatgcttca taactttgct ttaactcatc gttaatgata
    26101 agataatcat actcgctaag ctctttcatt tcatcgctag cgttttgtaa tcttttttct
    26161 agttgtatta ttgtatcagt atttcgctta ataagtcttt tttttagctc atctttattt
    26221 tttgtagtaa taaaaacaga aacaatctta tcagccattt tttttctggc tattttaaat
    26281 ccttgcacat caatatcaaa aacaactatt tttccattat ctaaagcatc ttgggtgtgc
    26341 tttaaagaag taccataaaa attttcatgc actctagccc attctagaaa atgatcacta
    26401 tctataccct tttgaaattc ttcatgagat ataaaatgat aatgcactcc atttttttca
    26461 ccctctcttg gcttgcgagt tgttgaagaa atagaaaaat aaagctcatc tttaaattca
    26521 tcaaaaagtt tttttaaaag agttgatttt ccagcaccac taggacctga aatcaacaaa
    26581 acaaaacctt gcaatttcaa tcctctttaa aactaatgtt tatatttata ttcatattca
    26641 tacccttaag agcagctttt aaggtatcat ctttaatact tgaagtgatc gctcctgcta
    26701 tgctttggct aagctcatta actatctctt cgctattatc atctttagtt acatcactta
    26761 ctataggctc ttcatttttt tctaagattt cctctccaag agcttcttgt atatcacttt
    26821 ctttcaatgt atcaaaatca cttatattta aatttggcac aaccacttcc tcttcatttg
    26881 ttcctaattc tttatcgtct aaaattggtt catctttaaa atcttctaag accttgctac
    26941 tattgtcact atcaatacca taatcaagct catcaagttg agctagttct tctttgattt
    27001 gatcttgagt actcaaattt gaagtaaaat catccatttc atcttgaaca tcttcttcca
    27061 caacaggagc aaactcctct aaaacttcct ctgattcttc attatctttt gcttgaccta
    27121 aaaattcagc atcctcagga agatcatcaa aatccatttc tttttcttgc tcttcaacca
    27181 caggaagatc atcaaagtcg cttatattag cttgtaattc tttgttat
//
LOCUS       DAPIWU010000009        26144 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.009, whole genome shotgun sequence.
ACCESSION   DAPIWU010000009 DAPIWU010000000
VERSION     DAPIWU010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26144
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.009"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            79..981
                     /gene="mltG"
                     /locus_tag="RJ285_000312"
     CDS             79..981
                     /gene="mltG"
                     /locus_tag="RJ285_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDV7383128.1"
                     /translation="MIFILGIFYYLTQPLKSNSVVFIPQGSISQIITYLKQNKYQMSN
                     IDKYILFFLGHPQSGWINIGTKDLNRAEFLHKLTIAKAALQTITLIPGETSVIFLEQA
                     AKQLGLDKDILLKEFQAQAPYDEGVFLPETYKIPKGITENLLIQMLLNHAEISNKKTS
                     EKIFGDYNPKKWHQYIIIASVIQKEAANDNEMPIVASVIYNRLKKGMKLQMDGTLNYG
                     IYSHVKVTPQRIRQDNSSYNTYKFTGLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDK
                     NTGVHIFSTNIDDHNKAINLQKGK"
     gene            1062..1493
                     /gene="flgB"
                     /locus_tag="RJ285_000313"
     CDS             1062..1493
                     /gene="flgB"
                     /locus_tag="RJ285_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HDV7383129.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPGKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1503..1997
                     /gene="flgC"
                     /locus_tag="RJ285_000314"
     CDS             1503..1997
                     /gene="flgC"
                     /locus_tag="RJ285_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HDV7383130.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            2004..2300
                     /gene="fliE"
                     /locus_tag="RJ285_000315"
     CDS             2004..2300
                     /gene="fliE"
                     /locus_tag="RJ285_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HDV7383131.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2307..4097
                     /locus_tag="RJ285_000316"
     CDS             2307..4097
                     /locus_tag="RJ285_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDV7383132.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNN"
     gene            complement(4112..5743)
                     /locus_tag="RJ285_000317"
     CDS             complement(4112..5743)
                     /locus_tag="RJ285_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
                     /protein_id="HDV7383133.1"
                     /translation="MTNLGIGFKVFSGDLLEKILAKSTDTKIKSILFGTLSTLIMQSS
                     TLVSIITISFLSAGLISLGAGIGIIFGANLGNTASSWLIVGLTNIKISMLAIPLLIIG
                     VLFFFQKDSVLKGLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVF
                     LGLGALLTGVIQSSTVIMAIIVAALLAGQISLENSLAATLGTSVGGVVTAVLASLSTN
                     IEGKKLAFASCIFNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVALFHTLFNLI
                     GVVLFSFFTPQIVLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIEALRKESEHLYN
                     NTYAIVAHAIGFSRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFS
                     TKAQVYINDETKNHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKI
                     RSNLGELLRSIEELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLSNVEHLISVRKIT
                     TAEGISILNDTTFAAKIAEELIGAVEVIFSKDISN"
     gene            complement(5886..6320)
                     /locus_tag="RJ285_000318"
     CDS             complement(5886..6320)
                     /locus_tag="RJ285_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383134.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMDEFEKLKG"
     gene            complement(6320..6637)
                     /locus_tag="RJ285_000319"
     CDS             complement(6320..6637)
                     /locus_tag="RJ285_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDV7383135.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILSNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGY"
     gene            complement(6634..8460)
                     /gene="htpG"
                     /locus_tag="RJ285_000320"
     CDS             complement(6634..8460)
                     /gene="htpG"
                     /locus_tag="RJ285_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDV7383136.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDANK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(8533..8901)
                     /gene="crcB"
                     /locus_tag="RJ285_000321"
     CDS             complement(8533..8901)
                     /gene="crcB"
                     /locus_tag="RJ285_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HDV7383137.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYFNFALN
                     IILNVFLCLFAAWLGFLIFK"
     gene            complement(8895..9587)
                     /locus_tag="RJ285_000322"
     CDS             complement(8895..9587)
                     /locus_tag="RJ285_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HDV7383138.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERVKLC"
     gene            complement(9568..10764)
                     /locus_tag="RJ285_000323"
     CDS             complement(9568..10764)
                     /locus_tag="RJ285_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDV7383139.1"
                     /translation="MKILLTLIFSIVVLFARGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKNSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYALWFLAVLFGVLFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10761..11408)
                     /gene="purQ"
                     /locus_tag="RJ285_000324"
     CDS             complement(10761..11408)
                     /gene="purQ"
                     /locus_tag="RJ285_000324"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HDV7383140.1"
                     /translation="MKVAIIRFPGTNCEIDTAYAFEKLGVKTQIVWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQSLRVVSNDNAFLKNFKKDEIISLPIAHGEGNYYADETTLKELQDKDL
                     IILKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDVGLKMLKGFLS"
     gene            complement(11410..11655)
                     /gene="purS"
                     /locus_tag="RJ285_000325"
     CDS             complement(11410..11655)
                     /gene="purS"
                     /locus_tag="RJ285_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HDV7383141.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELVIEKE"
     gene            complement(11664..12374)
                     /locus_tag="RJ285_000326"
     CDS             complement(11664..12374)
                     /locus_tag="RJ285_000326"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDV7383142.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12376..13710)
                     /locus_tag="RJ285_000327"
     CDS             complement(12376..13710)
                     /locus_tag="RJ285_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HDV7383143.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            13837..14127
                     /locus_tag="RJ285_000328"
     CDS             13837..14127
                     /locus_tag="RJ285_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HDV7383144.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKIVLKEHLAHCMVHAIEENDIQSIEELNKAIDMFMK"
     gene            14239..16812
                     /locus_tag="RJ285_000329"
     CDS             14239..16812
                     /locus_tag="RJ285_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7383145.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(16840..18771)
                     /locus_tag="RJ285_000330"
     CDS             complement(16840..18771)
                     /locus_tag="RJ285_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDV7383146.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDIAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKVNMKFNESEIIF"
     gene            complement(18768..19319)
                     /gene="maf"
                     /locus_tag="RJ285_000331"
     CDS             complement(18768..19319)
                     /gene="maf"
                     /locus_tag="RJ285_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HDV7383147.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENVLRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(19319..21847)
                     /gene="alaS"
                     /locus_tag="RJ285_000332"
     CDS             complement(19319..21847)
                     /gene="alaS"
                     /locus_tag="RJ285_000332"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDV7383148.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDVGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            21962..23035
                     /locus_tag="RJ285_000333"
     CDS             21962..23035
                     /locus_tag="RJ285_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HDV7383149.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGTKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRTLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIVVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            23040..23906
                     /locus_tag="RJ285_000334"
     CDS             23040..23906
                     /locus_tag="RJ285_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDV7383150.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            23903..24814
                     /locus_tag="RJ285_000335"
     CDS             23903..24814
                     /locus_tag="RJ285_000335"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDV7383151.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLPDFN"
     gene            complement(24874..26109)
                     /locus_tag="RJ285_000336"
     CDS             complement(24874..26109)
                     /locus_tag="RJ285_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HDV7383152.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDVAINAFIVSIISAACGFLSWVVLEWLIYKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
BASE COUNT         9294 a         4383 c         3653 g         8814 t
ORIGIN      
        1 actataaaca aagctaatat aagcacaaca aaaaatacaa caatatataa aattttcttt
       61 ttcatacgca acttcttttt gatatttatt ttggggattt tttattatct aactcagcct
      121 ttaaaaagca attctgtggt atttattccc caaggttcaa tttctcaaat tataacatat
      181 ttaaagcaaa ataaatatca gatgagtaat attgataaat atattttatt ttttttagga
      241 caccctcaat caggctggat caacataggt acaaaagatt taaatagagc tgaatttcta
      301 cataaactca ctattgctaa agcagcactt caaaccatta ctcttattcc aggagaaaca
      361 agcgtaatct ttctagaaca agcagccaaa caacttggac ttgataaaga tatactttta
      421 aaagaatttc aagctcaagc tccttatgat gaaggagttt ttttaccaga aacttataaa
      481 atcccgaaag gcattacaga aaatctactc attcaaatgc ttttaaacca tgctgaaatt
      541 tccaataaaa aaacttctga gaaaattttt ggtgattata atccaaaaaa atggcaccaa
      601 tatatcatca tcgcttctgt aatacaaaaa gaagctgcta atgacaatga aatgcctata
      661 gttgcaagcg taatttacaa tcgacttaaa aaaggtatga aacttcaaat ggatggaact
      721 ttaaattatg gaatttattc ccatgtaaaa gttaccccac aaagaataag acaagataat
      781 agctcttata atacctataa atttacagga ttgcctaaag aagcggtttg taatgtttct
      841 ttagctgcta ttcgtgcagc tatttttcct ttaaagacag attatttata ttttgtgcgt
      901 gataaaaata ctggagttca tatttttagc acaaatatag atgatcacaa taaagccata
      961 aatttacaaa aaggaaaata atttttgata tttttataca aaatagttaa attggaacag
     1021 tatttgcttg ttaatattaa aaattataaa aaggataaaa aatgattaac ccatttaaat
     1081 caaaagaact agtcactggt gctttagcgg gtagaaatct aagaaatcaa ctcatcaatg
     1141 ccaatcttgc aaatgttgat actccttttt ataaagcaag agatattgaa tttgaaacag
     1201 ctttggtaaa tcgtgcaaat gaaattttca aaaaaaatga caaaaaagaa ttagaattgg
     1261 cagtaaccga agaagggcat caaaaacctt ggaaatttcc tgatcctggt aaatctacta
     1321 tttacttaag agatggtcat ttggcaagaa atgatgcaaa tactgttgat ctagatgtag
     1381 aaactacaga aatgagtaaa aatacagtta tgataacagc tcttgatgga gttttaagaa
     1441 gacagagcaa tatctttagt tctatacttg atgcaagctc taaattaagt taaaggtaaa
     1501 ttatggcata cttaagtgat tttgatatta gtggttatgg tttaagtgct caacgtttta
     1561 gaatgaatgt tattagctct aatatagcta atgcaaacac tacaagaaca gctgaaggtg
     1621 ggccttatag aagacgcgaa gtgatcttta aagcaacaga ttttgataag cttttaaatg
     1681 agcaaattaa caaagataat aattttttaa aatatgaaaa tcctttaaat gatccaagtt
     1741 cgccagaaga agctaaacct gctattcaaa gtgttgtagt ggataaagtg gtcagagatg
     1801 acaaagattt tcgtatgaag tatgatccaa gccatcctga tgcaaatgct gaaggttatg
     1861 tagcgtatcc aaatgtaaac cctgttattg aaatggcaga tttgattgaa gctacaagag
     1921 cttatcaagc caatgtaagt gcttttacaa gtgcaaaaac tatagctcaa agtgcgattg
     1981 atttattaag aggataataa aaaatgaaca atattaatga tttaagatta aataataata
     2041 tttcaaatac caacaaaagt caaaattcca caggaattgg tgatgaattt gccaagatgc
     2101 ttaaaaatga aatcgatgat ttaaataaag cacaagaaag tggagaagct gcaatgacag
     2161 acattgccac aggacaagta aaagatttac atcaagcagc tatagctatc actaaagctg
     2221 aaagcagcat gaaatttatg ctagaagtaa gaaataaagc gatcagtgct tataaagaaa
     2281 tcacaagaac tcaaatttaa accctaatgc aagaatataa aaaaaatagg gtttcaaaag
     2341 ttgcctttgc ctactgcatg gcacttttgt ttatgattat ttttatcagc tctacttttt
     2401 ttcttacatc aaaacgtcat atacctaaca ctgaaaaaga tcaatacgct cttgctctaa
     2461 gaggatcgat tataaccaaa gataatttta ctatcacaag ttctaaacaa atttatcgtg
     2521 ctgaaattga tcttagaagc attaacaaag ataaatttga tctattttta aagctttttc
     2581 aaatttatag tgggataagt aacgatcaag tagcagatat taaaaaaaga atgcaaaatc
     2641 aaaaaaaacg ctcttataat tttgttcttt tacaaaactt agactccaag caagcaagct
     2701 accttaaaga tcttgctaaa aaactttata tacaaggttt tttcaaagct tttacaaata
     2761 actcaggaag agttgaaaca agaggattaa atatcatcga acatgaagaa gatagaattt
     2821 acatgtcaaa agattctttt actcctatta tcggttatac taaaatgata ttagatccag
     2881 aaagtggaat tttaaaaaat ataggagtta aaggtttaga aaaatactac gatgcatgtc
     2941 taagccctgt tcaaaatgaa aaaattcaag gacttaaaga tataggtgga aatattattt
     3001 taaatctaaa ttcactacaa caaaaaaaga tcaatggttg tgatttatat ttaaatcttt
     3061 ctttaaaact gcaaaaaagt atagagaaag ctatagatca aagaaatgag gatttaaaag
     3121 ccaatgaaat catcgttggg gtaatggaaa gtaaaacagg aagaatttta gctctagcaa
     3181 gctcaaggcg ttatgaccca caaaatcgcg gaaaggatct atcagttctt aatgcaagcg
     3241 ctatagaata cggctatgaa gcaggttctg ttatcaaacc ttttatcttt acaacagcct
     3301 taagacttgg taaaataaaa atggatgaag tgattaatac ttatggcggt tcttacaagc
     3361 taggacgttt caccatcaaa gacgatcaca aaatggacaa aatgactatg gaggaagtta
     3421 taagatattc ttcaaatata ggcatgatac aaattgctaa aagacttaac aatatagaaa
     3481 tcgtatcagg gcttaaaata tttaaatttg gcgaaaaaag tggtattgat ctaccctatg
     3541 aacaaaaagg agaaattcca aatcctaagc gcttaagaga tatagaaaaa tctgttttaa
     3601 gttatggtta tggacttaaa acaaccttta tacaactcct tgcagcttat aatgttttca
     3661 acaatgatgg gttttatatc acaccacgtt tagctgaaaa attctatcaa aatggacgct
     3721 ttacaaatct tgatgatgat gtaaaaaaag aaaaaattct ttctagcgaa gccgctaaaa
     3781 cgatgcaaaa tgttcttata aatgttatag aaaaaggaac aggaaaaaag gcaattacac
     3841 aaggtattat tgcaggaggt aaaacaggaa cggcaagaat agccgaaaga caaggttaca
     3901 cctcaaatcg ctacaatgca tccttttttg gttttgcaaa tgatttaaat cacgcctata
     3961 ccataggagt tctcgtaaga catcctacta aaccttatag ttattatgct gcacaaagtg
     4021 ctttgcctat gtttaaagat gttgttgata ttttaatcaa tgaagaattt ctaacgccta
     4081 tacaagacaa taactaaact agcacaaaca actagtttga tatatcttta gaaaatatca
     4141 cctcaacagc acctataagt tcttcagcaa tcttagcagc aaaagttgta tcattaagta
     4201 ttgaaattcc ttcagctgtt gtgatttttc ttactgaaat aagatgttca acattgctca
     4261 aggttaaagt atcgatttct tttaaaattt cttttccttt ttgaagattt ttaataatca
     4321 aataaagctt ttcacgatct tcaacaactc taagctcttc gatacttctt aaaagctctc
     4381 ctaaattcga tctaatttta ttgtactcta aagccaaaaa ttcattagaa gaactagaat
     4441 atttcttaat atttgcttgg ataattttta aatttttagt tgtttcggct aaatttttag
     4501 ctgccatctt aaaggtaaaa attttatgat tctttgtttc atcgttaata taaacttgtg
     4561 ctttagttga aaaatcgata atagcttcaa aaagaacctt tatcctagtt tgatacaaat
     4621 agtccaaatc cacattttta ctaaaccact ttttattttc taaaatttct ttaaaacttt
     4681 tatcactttg tatatcttta cgactaaaac ctatagcatg agcaacaatt gcataggtat
     4741 tgttataaag atgctcgctt tctttcctta aagcttcgat ggctgtgtca ctaaacttaa
     4801 ccaaactact atcaagatat aaaggcttgt ctttattctt atctttagga gcttttacta
     4861 tcttatttaa aaaaagaaca atttgaggag taaagaatga aaaaagcaca acaccaatta
     4921 aattaaacaa agtgtgaaat aatgctactt tcaaagctat atcttctatg tttaatacaa
     4981 tggataaaaa attaagaaaa tgtataaaat aaggaaaaat aagcactatt aaaaaagcta
     5041 taccaaaatt aaaaatacaa cttgcaaacg ctaatttctt tccttcaata ttggtactta
     5101 aagaagctaa aacagccgtt acaactcctc caacactagt acctaaagtt gctgctaagg
     5161 aattttccaa actgatttgt cctgcaagta aagcagcgac aataatagcc attataactg
     5221 tgcttgattg tataactcct gtaagcaaag cacctaatcc taaaaaaaca aaaactcctt
     5281 taaaaccagc aaaatcaaaa cgagaaagat caattatatg tttaaaattt tcaaaaccac
     5341 ttttaatata atccacaccc aaaaagaaaa atcctatacc aataaaaata ttacccaaac
     5401 cttttaaaac actatctttt tgaaagaaaa ataatactcc aataatcaaa agtgggatag
     5461 ctagcattga aattttaata tttgtcaaac caacaatcag ccaagagctt gccgtatttc
     5521 ctaaatttgc tccaaaaata atccctatgc ccgcacccaa agaaataagc cctgcactca
     5581 aaaaagaaat cgtaataata gaaactaaag ttgaagattg cataattaaa gtacttaaag
     5641 taccaaaaag tatacttttt atctttgtat cggttgactt cgctaaaatt ttttcaagca
     5701 aatcaccact aaaaacttta aaacctatac ctaaattagt cattccaata aagaaatatt
     5761 gccactcctg ctaaaagatt agcaagctcg tcataacgaa ttaaaataaa aatcagaact
     5821 aaagtaaaaa tacttcatga aataaattta aaatatttta aagaatttcc ttcttcttgc
     5881 aatgcctaac cttttagttt ttcaaattca tccatcagaa attctcttaa attttcagct
     5941 tcttcttcgc ctttttctag atactcaagc aataaatttt ctaattcttt taaaaaagaa
     6001 aaaagttcat tttgccagat actatcgttt ttattgctca aattcatggt ttgtatgaaa
     6061 gtcaactctc tgcttaaatc cccaagtttt tctaaaaatt catctttttg attagaattt
     6121 tttaatgtta aattagcatt ttggatattt tctttaaatt ctctgatttt ttcatcgatt
     6181 aaatcacaaa attttggata aatatccatt ttaataggct ctaaaagagt tcgctcatct
     6241 atatttaaag taagcttttt aacagcaaaa taaagagcta aaaaagacaa agctgctata
     6301 agtaaataaa ttcctagcat taataaccct taagggctag cattccgcca tctaaattga
     6361 tgctttcaag tcccaatttt tcagctataa attcagctgc aaccatgctt ctatggccac
     6421 tacgacaaat aaaagcaagt tttttacttt catctctttt gctttgaaat tcatctaaaa
     6481 atttagcatt taaaagccct tgattatcat ataaagccac acattgcgca ttagataaaa
     6541 taccttcttc ccattctaaa ggagtacgca catcaaaaat ttgatatgcg ttcaaatctt
     6601 gctttgtcca aagacttgca gggatatttt ctatcatgaa aaagccttat tgataatttt
     6661 tgtaaggctt gcattaaatt cagcaggatt atccactccc ataccttcgc ttagttttgc
     6721 catatttaaa actagggttg ctatatctgc actaaaactt tcgttgtttt taagacctgt
     6781 aaaaatagcg tgttttggat tgatttctaa aataggtttg aaattttgtt cttgacccat
     6841 ttgttttaag agttgttgca tagcaaaatc aggtttattt ttatcataaa ctatacaact
     6901 tggactatct tttaaacgac tggttagtct tacatcttca acttgatctt ttaaaagttc
     6961 tttaaattta gctacaagtg gagcaaaagt atttttttct tcatcgctta gttcattttt
     7021 atcttctact tgattaatgg ctacaaattt taaaccttca aattctagca taggagttac
     7081 caaagaatca atctcatcat ccatgagtaa aacttctata tttttttgtt tatactcttc
     7141 aagcaaagga gaggttctta ataaactttc attatttcct gctatataaa aaatttcctt
     7201 ttgctcgcct tgaaggtcat ttttatactc ttctaaagag cgtaaatttt cacctttggt
     7261 acttttataa agcatgagtt ttaaaagact gtctttttct ccgccaaaac cataaagtcc
     7321 ttcttttaat accttaccaa aggttttaaa gaaagataag tatttttctt tatcattgtt
     7381 tttaagtttt tcaagttcac ctaaaatctt tttaacgcta gcttctttaa caccttttaa
     7441 aatttgattt tcttgtaaaa tttcacgact tacattaagt ggtaaatctt ctacatcgat
     7501 aatcccccgc acaaaacgca aataagttgg taaaagttct ttatcgtcat cgctgataaa
     7561 tacgcgtttt acataaagtt ttaagccact ttgataatcc acacggaata aatcaaaagg
     7621 tgcgttttgc ggtatgaaaa ataaagaatt atattctaat tttccttcac ttttagtgtg
     7681 aagataaagt aaaggtttgt ttgaatcatg aaaattttgc tcataaaatc tttcataatc
     7741 ttctgcttta aggcttgatt tttgcattct ccataaagca ttggctttat tgatttgaga
     7801 aattttaagt tcagtttttc cttcttcttc tccttcttta gcaggagtaa attcttcttt
     7861 ttccatgaaa attggaaatt gaatatgatt agaatatttt tctataatgc tttcgatttt
     7921 ataagtatta gcaaactcat catcttttaa gtataaagta atgcttgttc cttgttcttc
     7981 tttgtttgcg tcattaatct cataaccatt tgcatcagaa ctccaaagat aagctttatc
     8041 atctaaagct tttttgctta aaacttcgat tttactagcc accataaaag cagaataaaa
     8101 acctactcca aattgtccta tgagttgaga atctttttta gcatcaccac ttaaattttc
     8161 taaaaaactt ttagtaccgc tttttgctat ggttccaagg ttgttaataa gatcatcttt
     8221 atccatacct ataccattat cactaatgct taaagttttt ttatctttgt caattttgat
     8281 ttcaatttta ggttcgaatt ttaagctttt atatttatca tcacttacgc ttaaaaaatt
     8341 aagtttgtct aaagcatcgc ttgcatttga aataagctct cttaaaaaaa tttctttatt
     8401 agaatataaa gaatgtatca taagctgtaa aagctgattg acttcggttt gaaattgcat
     8461 tttaatttcc tttgtaattt tttaaagtgg tattttagca aaaaatacaa attctaaagt
     8521 aaatttaaag atttatttga aaattaaaaa gccaagccat gcggcaaata agcaaagaaa
     8581 gacatttaag atgatattta acgcaaaatt aaaataattt ccactttgca aaagaagtaa
     8641 attttgataa gaaaaagtag aaaaagttgt aaaagctcct aaaaaacctg tacttataaa
     8701 gcttttaagc aaaggagata aacctttatt ttgtgcataa gaaaacaaaa gtcctatgat
     8761 aaaagaaccc aaaacattta caaaaagagt tccaaaactg atagaataag gaaaaaattt
     8821 attcactaaa tttatagaaa gcattcttaa gattgctcct ataaatcccc caaaaccaac
     8881 tactagaaga gtatttagca aagcttgact ctttcttgat cgagtaattc ttgcattttt
     8941 tttctggtgt tttcaagcca tttttcatca tttgtatcga ctaaatccat acaaatgatt
     9001 ttaagtactc cgctgcttgc gctaaaactt tttgtgtcta aaatttttgc agaatccaca
     9061 attaaaatag gttgaacttt aagatttaat ttttcactta aaatttttgc tccactttga
     9121 aatttaagca ttttttcatt tttagatcta gttccttctg gaaaaatagc caaaacccta
     9181 tcttcactaa ttctttcttt tgcttctttt aaaactcgta ccaaatcacg tggatttttt
     9241 ctatctatac aaagaagttt tggttttttc atagcaactt tgaaaatagg aatttctcct
     9301 aattcttttt tggcaatcca gcataaattt ttaggatata attcttctaa agcgatgata
     9361 tctaaagcac tttgatgatt cattaaaatc atctgagctt gcggattaaa agtaccaatg
     9421 atttcttgtt tataagagat agtatatctt tgaaatttag cccaaatttt gcggattttc
     9481 caaagtgtgt tttgagattt tgtaaagcaa aaacaaaaaa tcaccaaagc aacacttaaa
     9541 acaaaaaaaa tccaaaaata aagagcttta atttttttgt aaatcatctt tattaaccca
     9601 acctattttt ccatcagaaa acagtacttt aatataattt tgtcttttgc ccaaaacttc
     9661 tactttttca tctgcatttg ccgtataaaa ataagttgaa ggctctgtag gtaaaatttt
     9721 agccctagaa ccagccttga taattgcatt ttgagtattg gtatctacaa gaaaactaag
     9781 cgcaaaacaa acaactgcca aagccagaat aatgtaattt tttctccata caaataaaac
     9841 tccaaataaa accgctaaaa accacaaagc atattgttta taaatattta agtctttatt
     9901 tacaggattt aaatcactct gagtactaat ctcatcgtca ctaattttta attttaaatt
     9961 tatattttca agctttttac tgttcttatt gaaatacgaa aattcaaaat ttgttttact
    10021 taatggcaaa atagcataat aaaaagcact agaagcatta aagtctcctt ttaaattttc
    10081 aataccttgc ttttgaattc cttctataaa aaagctttta agatttgtat tggttgcgtt
    10141 tagttctacc atcataatga tattagcatc atcaaaataa ctcgctttaa cttttttaat
    10201 ttccaaagaa cttgccacaa ggtgtgaaaa atccttattg gataaagtat tttcaaattt
    10261 gataggatta agattgatat cagcctcttg aaaagcttca ttatttctaa gaagtttgat
    10321 agaaatttta ctcaaactag catttgaatt tttggcttca aaccataaag ttgttttata
    10381 ttcattgttg ataaattccc attttgcatc tggatttaaa aaagataaat tagttttttc
    10441 tacgcttatg ttaaaatcaa attttgtatt ttccgtagtg cgagcataga tcgtaatagg
    10501 aaaaacttct ccaacatata ctctacttgg atattcatca tttgtaagaa ccaaactccc
    10561 tttggctaca aaaggatcat ctacattgct ttcaaagtca ttgttttcat cacttggcgg
    10621 aatattttga taaatttttt gttcttcttg gggtaatttt tgtaattctt tttgcatatt
    10681 ttcatcttgg ccgctaaata cagaaatttc acccctggca aacaatacaa caatgctaaa
    10741 aattaaagtt aataaaattt tcaagataaa aagcctttaa gcatttttaa acctacatca
    10801 ttacctagaa ctttttcaca agcacgctca ggatggggca taagtccaaa gatttttttg
    10861 ttttcatcac aaattcctgc gatatcaaat acagaaccat ttggatttgg ctcgtatttt
    10921 agaataataa gatctttatc ttgcaattct tttaaagtag tctcatcagc gtaataattt
    10981 ccctctccat gggcaattgg taaactaata atttcatctt ttttgaaatt tttcaaaaag
    11041 gcattatcat tagaaaccac tcttaaactt tggttttttg agataaagct aagattgttg
    11101 ttatgcttca ttgcaccttt taaaagacca ctttcaagta aaatttgaaa accattacaa
    11161 atacctaaga tatatcctcc tttttttgca tgattaaaaa caccttgcat agcaggagca
    11221 agttttgcaa tagctgcgca tcttagataa tctccataag aaaatcctcc tggtaaaaca
    11281 actaaatctg catcaaattc tttttcttca tgccaaacaa tctgcgtttt tactccaagt
    11341 ttttcaaagg cataagctgt atcaatttca caatttgtcc ccggaaatct aataatagca
    11401 actttcattt tactctttct caattacaag ctcataatct tcaatgacgc tatttaccaa
    11461 caactcttca cacatttttt ttacttgttc tttggctaat ttttcatctt tctcatcaag
    11521 agaaattttg atttgttttg ctatttttac ttctttaaca ctattaaaat ttaaagaatg
    11581 caaagctttt tccaccgctt taccttgtgg atctaaaacc ccatttttta aagaaatatt
    11641 tacaataact tccatatttt tccttaattt aatattcttt ttaaaacttc ttcataagcc
    11701 atttttacat tacctagatc ttgacgaaat ctatctttat ctaatttttc attgctaaat
    11761 ttatcccaaa atctacaact atcagggctt atttcatcag ctaaaacaag ctcattatct
    11821 ttagttaaac ccagttcgat tttaaagtca atcagcctta aatttttatt atcaaaaaat
    11881 ggagttaaaa tagagttaat ctttctagcc atatttttaa tttcactaat ttgagcttca
    11941 ttttgcacta aatttaaaat caaacaatgc tcatcattga taaaaggatc gcctaaggca
    12001 tcatctttaa gacaaaattc caccaaagca aaaggtagca cagtgccatc tttaatgccc
    12061 agtctttttg taagagaacc tgttgcaaca ttgcgtacta taacttcaat aggaacaatt
    12121 ttacattttt taaccacttg ttctgtatcg cttatagttt ctaccaaatg ggttttaatc
    12181 ccattttttt cgagcaaatg aaaaatttca gtactgattt tacagtttaa tgcacctttt
    12241 ccactttcat tgcctctttt ttctgcatta aaagcagtta aatcatcttt aaactcacta
    12301 attagtaaat tttcatcatc agttttgaaa agttttttac cttttccttc gtagagcatt
    12361 tctttttttg tcattttatt gtccttgttt gatatttaaa attttaatag tatcaatagc
    12421 cgattttaac tgtgcgtcat cattgatttg tttttgactg attagatttt tattgtcttt
    12481 attttcttgt ttatcttctt ttttattttt atctattttt tcaagctcac tttctaaatg
    12541 ttgttttaag tcgctttctt ttatagaaaa accatcttct tgagtattta ctttacctgg
    12601 aaaaacttca atatcaggtt ttacacccac tgcttgaata gtacgtccgc ttggaagata
    12661 atatcttgcg atagtaagcc ttaaagcttc agttttatta ataggtatga tttgctgaac
    12721 actacctttt ccaaaagtat tttcacccac aataacaccg cgtttaagat cttgtaaagc
    12781 tccacttacg atttcacttg cactagcact tccaccattt acaagcacaa ccaaagaagc
    12841 attagaaatt ttgtttttag gatcggcttt atattcttga ttttcacttg cgatgcgtcc
    12901 tttttgagaa acaataacac ctttatctac aaataaattt acaagtccta tggcttgatt
    12961 taaaagtcca ccaggattat ttctaagatc taaaataact cctttaacat taggatattt
    13021 tttaagttct ttacttgcca catctacaac atttttatca aaatttgtaa ccctaagata
    13081 aagaatgttt tcattttcta tcatttttgc ataaacactt tctatcttaa taatttctct
    13141 tgtaagtgta acatcaaaag gttttgttgc accttttcta aaaatggtta aagtgatttg
    13201 agtttttggc ttaccacgca ttttatctac agcatcattg agattaattc ctaaagtggc
    13261 ctcatcatta atttttaaaa taatatctcc tgattttatc cctgctttat ctgctggtgt
    13321 tccttctata ggagaaacaa ctgttaaagc accatctttc atacctacgg ttataccaag
    13381 gccgccaaat tcaccattag tttgaatttt catatcatta aaatcttttt catttaaaaa
    13441 agaagaatgc gcatcaagat tgcttaaaag ccctgataaa gatttatcca ccaaatcgct
    13501 gatattttga tcatccacat agtattgctc tactatagca agagtttttg taagcttatc
    13561 taaagcttct aggcgttttt gaacctgctc ttctttttga tcaactttag cttgtaaatg
    13621 acttgttaaa aatagacata aaatgaaagt agtagcaaag cctgcaagac ccgcaaaaaa
    13681 tcgttttgtt ttcaaaataa gctccatcat tgagttttag tttaattagt ttaaagagta
    13741 aattttaata aaaattgctt aaaacttcgt aaataaattt aaattcttaa aaatatgtta
    13801 aaatagacta aaaattccaa aaagaaagtt aatacaatgt gccaagaaaa acatactcat
    13861 acacattctc aaaaacatct taaagcagtt tgcaatcgtc taagtagaac catagggcat
    13921 ttaagcgcta ttaaaagaat ggttgaaaat gacaaagact gtagtgaaat tttaatccag
    13981 cttgctgccg taaaagccga agttaacaat actgcaaaaa tagttttaaa agaacattta
    14041 gctcattgta tggtacatgc tatagaagaa aatgatattc aaagtataga agaattaaac
    14101 aaggctatag atatgtttat gaaataatct aaaattagtc atttgtccta ttatttaaaa
    14161 aattttactc aattaacttg acattatatg actaaagtta tataatagca agtatataaa
    14221 ctaaataaag gataaaacat ggcaaatata caagattttt taactgataa tatgctttca
    14281 aatcttgaaa gtgcagcatc tttagctata cattctaaaa ataatgaagt tgtaccttta
    14341 catcttttat gggctttaag cgtagataat gcaagtattt taaatcaaat tttaaataaa
    14401 ttaaatattt ctaaagaagc cttagagctt gaaattaaaa gcagaatttc aaaacttgca
    14461 acgagttcaa atgtaaaccg tgaaaatata cgcttttcca atgaacttat aaattcatta
    14521 gaaaatgcta aaggattaat gagtgctaat ggagatagtt atttaagtgt ggatacttgg
    14581 cttataagtg aaagtcaaaa aagtcctatt aaagaaattt tggcgcaatt tttagattta
    14641 agagaatttc aaaaagagct tgaaagtcta agagcgggac gcaaaatcga tagcaaaaca
    14701 agcgatgaaa ccttagacag cttaaataaa tttggtatag atttaacctt aaaagcaagc
    14761 gagggtaaac ttgatcctgt tataggcaga gaagaagaaa tcgaacgttt gatgcaaatt
    14821 ttaatacgca aaaccaaaaa taaccctata cttttaggtg aaccaggcgt aggaaaaaca
    14881 gctatagtag aagctttagc acaaagaatt atcaaaaaag atgttccaaa atctttgcaa
    14941 aataaaaaag ttatcgctct tgatatgagt gctttaattg caggtgcaaa atacagagga
    15001 gaattcgaag atagattaaa agctgtggtt aatgaagtga taaaaagtga aaatatcatt
    15061 ctttttatcg atgaaattca cactatagta ggagctggag cgagtgaagg cagtatggat
    15121 gcggcaaata ttttaaaacc cgctcttgca agaggtgaac tccataccat aggcgcaact
    15181 actttaaaag aatatcgtaa atattttgaa aaagatgcag ccttgcaacg ccgttttcaa
    15241 cctgtaaatg taggtgagcc aagtgttaat gaggctttgg ctatgttaag gggtataaaa
    15301 gaaaagcttg aaattcatca taatgtaact ataaatgata gcgctttagt agctgcagct
    15361 aaactttcaa agcgttatat agcggatcgt tttttacctg ataaggccat tgatttaatc
    15421 gatgaagctg cagctgaact gaaaatgcaa attgaaagcg aaccaagttc tttaagaaaa
    15481 gtacgcaaag atatagaaac tttagaagtt gaaaatgaag ctttaaaaat ggaaaatgat
    15541 gaaaaaaatc aaaaaagact cgatgaaatc gcaaaagaac tagctaattt aaaagaaaaa
    15601 caaaatgccc taaattcaca gtttgaaaat gaaaaaagtg tttttgatgg cataagtgct
    15661 aagaaaaaag aaattgatct gcttaaaaat gaagcttctt tggctaaagc tagaggtgaa
    15721 tttcaaaaag cagccgagct agagtatgga aaaattccaa gtcttgaaaa agaagtagaa
    15781 attttagaag ataaatggaa aaaaatgagt gaaaatggag ttttacttaa aaatcaagtg
    15841 gatgaggatt tggttgctgg aattttaagc aaatggacgg gtattagcgt gcaaaaaatg
    15901 ttaacttctg aaaaacaaaa attcttagaa gtggaaaaac atttaaaaga aagtgtcata
    15961 ggacaagata aggccttaag tgctttagct agagccatta aacgtaacaa agcagggctt
    16021 aatgcggaca ataaacctat aggaagcttt ttatttttag ggccaacagg ggtaggaaaa
    16081 acacaatcgg ctaaagcttt ggcaaaattt ttatttgatg atgaaaaagc aatgattcgc
    16141 tttgatatga gtgaatttat ggaaaaacat agtgtttcaa gactcttagg tgcgcctcca
    16201 ggatatatag gacatgaaga aggtggagag cttactgaag ccgtacgaag aaaaccttat
    16261 agcgtgcttt tgtttgatga agttgaaaaa gcacataaag atgtatttaa tgtgctttta
    16321 gggattttag atgatggtag agcaaccgat agcaaaggtg taacagtgga ttttaaaaat
    16381 accattatca ttctaacttc taatatcgcc tcaagtgcca ttatgaattt aagtggaaaa
    16441 gaacaagaag atgcggtaaa aaatgagtta aaaaatttct ttaaacctga gtttttaaac
    16501 cgtttagatg atattatcac ctttaatcca cttggaaaag atgaagctta tgaaatagtc
    16561 aagcttttat ttaaagattt acaaatgagc ttagaaaaca agggaataaa agcaagttta
    16621 agcgaaaatg cagccctttt aatcgctaaa gatggttttg accctgattt tggtgctaga
    16681 cctttaagaa gagctattta tgatcttata gaagataaat taagcgatat gatacttgct
    16741 gatgaacttc atgaaaatga tagcattatc attgatgcaa aagatgatga aataatcatc
    16801 aaaaaagctt aatcattttg aaagtagatc tttctacttt caaaatataa tctcgctttc
    16861 attaaatttc atatttactt ttggtaatgg tgatttggtg gtataataag cactttctcc
    16921 tttataattt ccacgataaa ctccattagg aatgctaaat tttctagttg tatcagggaa
    16981 tttttctata tattgagtta aaaattctct aaacacagga gcagctgttc tagccccacc
    17041 ttctgtataa cgcataggtt tgttgttatc atttccatac caaatgattg cttctatttc
    17101 aggcgtaagt ccacaaaacc aagcatcaac acttttattc gttgttcctg tttttcctgc
    17161 tatttctata tcttttactc ttgcattacg ccctgtgcct ttttcaacaa catttctcat
    17221 catatctaaa accagaaaac tttgcgcttc atcgctgact ttacgctcat ttgagttaaa
    17281 ttccatgatg gttttaccgg ttttatcctg aacttgtctg ataatttgag gatctttaat
    17341 cgtaccatag ttcccaaaca tggtataaaa tttcgaatac tccaaaggag aaataccaaa
    17401 acttcccaat acgattgata aattaggcgg tatatcttta aatccaaatt ccattagttt
    17461 agagtaaaga acatcaagcc ccatatcaag tgcgagatta atggtagcta aatttcttga
    17521 tcttgttaaa gcttctttta aggtaattaa acctaaaaat ttaccccctt catttttagg
    17581 tttccaatcc tcattattac ccgctccacc ttcaaaaatt ctagaaatat cagcaatttc
    17641 actcataggc gaatatccta aattaatcgc cacttgatac acaaaaggtt taaaagagct
    17701 tccaggttga cgcatacttt gagtagcgcg gttataatta cttttttcat aatcaactcc
    17761 acctaccaaa gctaaaacat caccactttg atgatttacc acgaccatag ctccgttcaa
    17821 agtgcttaaa tttgcatctt tatcgcgttt tactatctca tcataaccaa attttaaagc
    17881 attctgtgcc atattttgaa catctaagtc tatatttaaa atgattttat atccacctgt
    17941 ttttaagtct ttgatattag ggcttaattg tttaatcact tcatctacga cataaggagc
    18001 agcattttga gtaagcgtat catcataaac ttgcggaatt tctttaatgg ctatatcata
    18061 atctgctttt gaaatccaac ctagattata cattcttgaa ataacattat ttgctcttga
    18121 aatggaaaga tctaaatgct ttgtaggatc ataactgcta ggtgcttttg gcatacctac
    18181 taacatagca atctctttaa ggcttaattc atttaaattt ttatgaaaat accccaaagc
    18241 tgcggttttt actccataat acccatgtcc aaaaaaaata aaatttaaat acctttctaa
    18301 aatttgctct ttagttaaaa tggtttccat tttataagca agcaaagctt cgcgaatttt
    18361 acgcgtaata gttctttcag gggttaattc cgtgttttta ataaattgct gggtaagagt
    18421 ggaagctcct tccatggttt ttccaccgct ttttatgatt tttacagcag ctctaaaaat
    18481 ggcatcgata ttaactccat tatgttcaaa aaagcttgta tcttctatag caaccaaagc
    18541 ttctataagg cgtggaggaa gctcttcata aggagcgtaa aaacgatgtt gttcaaaaat
    18601 attagccaca agcttgccat ttctatcgta aatttgtgtt gtaagaggag gtttgtattc
    18661 tttaaaagta taaccctcag tatcagcact tgtgaaaaga taagccacat aaataaatcc
    18721 agctataaac aaaagagtaa aaaatgaaaa aatatatttt aatattttca taaataagcc
    18781 tttaaagttt ggatatcaag ccctaaagca gtgcttagat ttcctacttg ttgggtgatg
    18841 aaattttgat gaaaaccctc acacataata caacccgcct tgcctttata aagatcattt
    18901 tctacataat ctcttaaaac attttcatca aaatttttaa aataaagtgt agtttttgaa
    18961 agagaaaaaa ctcttttttc aggttttaca agcaaaaaag ccgataaaat acttgcatac
    19021 tttccatttt gcaaggcaag catttcataa gcttcttttt tatcctttgc tttggtaaga
    19081 attttttcat ctatacaaac tatactatct gcaaaaagca aattttggtt ttgaaaatct
    19141 ttgcctaaag tacttaaaaa ttgtctttct ttttcaagaa ctattttttg aacatataaa
    19201 aaaggtgaaa tatttttatt taaattttca tcataatcaa aactaacttg cctaaaatca
    19261 atctttgcgg ttttaagcaa gttagctctt gaaatggaac ttgaagcaag aattaacatt
    19321 aaagtgcttt ttctatcgtt tctaagcttt gttttaaagc ttcattgatt ttgcttaaat
    19381 cttttccacc tgcagtagca aaatcatctc ttccgccacc atttccacct aaaatttgcg
    19441 ccgcttcttt aaccaaagct cctgctttta aaggcacatc tttaacgcca gctgctaaag
    19501 tgattttttc atcttttact tggataagta aaatcaccgc tttagcaaat ttgtttttaa
    19561 aatcatcaat catagcttta atatcgccat tatctatacg ttttacgcaa atttcaacac
    19621 cttggatatt tttagaatca agctcggttt tacttgaatt tttaagctca ttttttaaac
    19681 ttaaaatttc atttttaagc tttttaatcc cgcttaaaat atcattattt ttaagttcat
    19741 cttttacttt agaaagttct tcgagttgat tttttacaaa ttctaaagcc gctttagaaa
    19801 ccacagcttc aatacgtcta actccagcac tcacaccact ttctttaact atgtaaaaac
    19861 ttcctatttg agcagtattt ttaacatgag ttcccccgca aagttctttg ctttcaccta
    19921 gagttaaaac acgcacattg ccttggtatt tttcattaaa caatgctata gcaccgcttt
    19981 ttttagcttc ttctaaaggc atattttcta agatagcttc gcttgagttt ataatcattt
    20041 tattgactct tttttcaatg ctttctagct cttctttgtt taaagcttta tgatgagtaa
    20101 aatcaaatct tagtttattg ctttcaacca aagatcctgc ttggcttaca tgagaaccta
    20161 aaatttctct taaagcatga tgtaaaagat gagtggctga gtggtggcgt gcgatttgct
    20221 ctcttttttc tgtatcgatt cttgcatgaa ctatatcgtt aacttttagt tcttcgcctg
    20281 cttttataaa gctaagattg agattaaaaa acttttgcgt atctaaaact tcacgcttag
    20341 ctataaatcc actatcagca ctttgccccc cacttgttgc ataaaaaggt gtgttttcaa
    20401 gcatcaccca acccacatct ttaagggtgg aaacttcttt aaaatcttca tctaaaaggg
    20461 ctaaaatttt actttcgcat tctgcttttt cataacctac gaaatgattt tctccaaatt
    20521 tttcaagtaa gtttttaaaa tctccgcttg cagttttatc tccacttcct ttccaagaag
    20581 ccttagcgcg tgctttttgc tcattcatga aaagttcaaa tttttcttca tcaactttaa
    20641 gatttttttc tcttagcata tcagccgtta aatcaagcgg aaaaccataa gtatcataaa
    20701 gcttaaaggc tacttctccg ctaaaaattt ctttagtgtt tttaagctct tcattaaaaa
    20761 tttcaatccc attttctata gtgcttaaaa atctttcttc ttcaaggcga atttgttctt
    20821 ttataaagtc ttttttctca ttaagatagg tataatgtcc gcccattaaa tcgcacacaa
    20881 tatcaactag tttatacata aaagcttgtt taaaacctag caaatatcca tgtcttaaag
    20941 cacgacgcaa aatacgacgc aaaacataac ctctaccttc tttatcaaaa cttacccctt
    21001 gtgcaagcaa aaatacactt gatcttatat gatcagctat gactctaaaa cttgctccgc
    21061 tttcataaac ataagtttta ttacaaagtt ttgaaatttc attgatgatt ggcataaaaa
    21121 gcgagctatc aaaattgcta aatttacctt ctttaatcgc tgttaccctt tcaagcccca
    21181 ttcctgtatc aatgcttggc tttggcagtg ggctaagcac tccatcagca cttctttcgt
    21241 attgcatgaa aacaagattc cagatttcta aaaatctatc tccatctccg cccatataat
    21301 cttcgcttga gttaaaatgc tcttgtcctt ggtcataaaa aatctcacta caaggaccac
    21361 aaggaccagt atcgcccatt tgccagaagt tatctttatc gccaaatttg taaattcttt
    21421 ctttttgaat gtgtttttgc catagattaa aagcttcatc atcgttttca tgcacggtta
    21481 cataaagtct atctttaggt agttttaaaa cttcagttac aaattcccaa gcataagcta
    21541 tggcttgttc tttaaaataa tccccaaaac taaaattccc aagcatttca aaaaaagtat
    21601 gatggcgtgc ggtatatcct acattatcta agtcattgtg ctttccaccc gctcttatac
    21661 aagtttgaca gcttgttttg cgtggagggt ttgggcgtgg aatttctcct gtaaatatac
    21721 ttttaaaagg caccataccc gcattagtaa aaagtaaagt tgcatcatca ggaactaaag
    21781 gacttgacgg ggttatctca tgtccttttg atgcaaaaaa atccaaataa gcttttctaa
    21841 tatccatgaa ttttcctaaa gaaattttta taaaaacata tcataccaaa attactttaa
    21901 attaagtaaa actaaaatac aataaacatt tttatttaat tttatttctc taaggttttt
    21961 tatgaatttt atcaatcttc aagcccaata tctcgcatac aaagatgaaa tcaatgctga
    22021 aattgaaagc gttttatcaa gctcttcttt tataggcggt acaaagctta acgaatttga
    22081 gcaaaattta gctcattttt taggtgttaa acacgctata ggttgttcaa gtggaaccag
    22141 tgctttatat cttgccttaa gaaccttaga tattggcaaa gatgatgaag ttatagtgcc
    22201 tagttttact ttcatagcaa cagctgaagt tgtggccttg gtaggtgcaa aacctgtttt
    22261 tgtagatata aatttatcaa attacaatct tgattttgaa gcagtgcaaa aagcaataac
    22321 tccaaaaact aaagctgtta tagtagtgag tatgtttgga caaatgagtg atttaagggc
    22381 tttagaagaa attttaaaag ataaaaatat cactttgatc gaagatggtg cacaaagttt
    22441 tggcgcaagt ttcaaaggag aaaaatcctg ctctatagct aaaatttcat gcacaagctt
    22501 ttttccttcg aagcctttgg gagcttatgg cgatggcggg gctatttttt gccatgatga
    22561 tgaaattgct aaaaaaataa gaattttact caatcacgga caaactcagc gttataaaca
    22621 tgaatttata ggtataaatg gacgccttga caccttacaa gcagcgattt taaatgttaa
    22681 gttaaaatac ctagaaaaag aattagacaa aagacaaaaa ttagcacaaa tttataatgc
    22741 aaatttaaaa aactgtcaaa ttccacaaat taatccaaat gcttttagcg cttatgcaca
    22801 atacagtgtt ttagttgaag atagagctag tgtattgcaa aaatttgaaa aagctaatat
    22861 accttatgct atacactatc caaccccttt gcataaacaa ccttgcttta gtgagttttc
    22921 aaatttagaa cttaaaaatt cagaatacgc aagcgaacac atcttatctt tgcctttttc
    22981 acctttttta agtgaagaag agcaagagca agttatttgt atttttaaag attgattcca
    23041 tgaaaatagg tatcataggc cttggaaaaa tggggcaaaa ccacttaaat gaacttagta
    23101 aaaattctca ttttaaactt aatgcacttt ttgatctttg caaaaatcca aacctaaata
    23161 tttttgatga tattttttat gatgatctgg ataaattttt aaatcaaaat aatgatatta
    23221 tcatcatagc aacacctaca aattcacatt taacaatagc aaaaaaagtt tttaaacaat
    23281 gcaaatgcgt tttaatcgaa aagcctttag ctctaaattt aaaagaaata gacgaaattt
    23341 caaatttagc taaagaatac agcataaaag taggtgtagg tttttgcgaa agatttaatc
    23401 ctgcggtttt agccctaaaa aaagagcttg aaaatgaaga aattatcagc attaacatac
    23461 aaagattttc accctaccca caaagaatca gcgatgtagg gattttgcaa gatttggctg
    23521 tgcatgatct tgatttgctt tgttttttaa gcaaacaaga aataacaaaa accaatttgc
    23581 ttaaaaaata cacccaagat caaacaagag aaagtgaaag cattattcta tgtgagcttg
    23641 aaaaatgtat tgctagcata catcaaagtt ggaatagcac acaaaaacta agaaaaattc
    23701 atcttattac taaaaatcat ttttatgaag ccaatttaaa tgacttttct ttattaaaag
    23761 atggaaattt tatagaactt actcaacaaa gtccactttt ttcagaacac gaagctttgt
    23821 taaaacttat cgataatcaa cccaatcatt tagccagcac gagcgatgct tacaaagttc
    23881 aagaaatttt agaaaggttt gcgtgaaatt agttttattt ttaaatatgg gcggagctac
    23941 gaatttacaa gattgtgaag tttttttaaa aaatatgttt aatgatcctt atattttagg
    24001 aatcaaaaat cgatttttaa gaaaatttgt agcatggatc ataacaaagg ctcgcgttaa
    24061 agccatgcaa gaaaactata aaaaaatggg cggaaaatcc cctttaaacg aacttactca
    24121 aagcctgtgt gacaagctta atttaaaaca agatgaattt aaatttgatt ttgtaaatct
    24181 ttatgttcct ccttttgcca cagaaatttt gcaaaaatac actttaaatg caagtgatga
    24241 aatcattctt tttccacttt atccgcacca ttcttgcacc acagtaactt catctttaga
    24301 agttctgcaa aatgaaattt caaagcaaaa aattcaagca aaagtaaaaa ctatagatat
    24361 tttttacaaa aatgagcttt ataacgagat gatagtttcg cacattttgg ctaaaaaaag
    24421 taaatttgat gccaaaattt tgattttttc agcgcattct ttaccacaaa gcattattga
    24481 taaaggtgat ttatatgaaa agcatgtaaa tgatcatgta gaaattttaa aagaaaagct
    24541 aaaagatcat tttgatgaat ttattttagc ttatcagtct aaactaggcc ctgtaaaatg
    24601 gcttgaacca aatacaagcg atgttttggc aaatttaaac gataaagctc tgatttaccc
    24661 tatttctttt tgcattgatt gttctgaaac gatttttgag ctaggtatgg agtataaaca
    24721 tttagcaaag tgcgattatg atttaatcac ttgcccaaat gatagtgatg aatttatcca
    24781 ctttatttta aagtatttgc ctgattttaa ttaagaatga ttttgaagtc cttgtttatg
    24841 attacaagga ctttttagta aaaatttagc caactaagct aaagtataag ctttttctcc
    24901 gtgcaaactc acatctaagc ctttttgctc tacttcttct tttactctta agtctgtaaa
    24961 acaagagata atcttaaaaa taacaaagct tataagagct gacaaaacca cacaaatcac
    25021 aatagcaaaa atttgctctt ttaaaagttc caaacttccg ctgataaaaa atccctcgcc
    25081 aagtgcattt tgggcaatca cattaggatt tactttagca cttgcaaaaa gccctgtggc
    25141 aattcctccc caaatacctc cgattccatg taaagaaaag gcatctaaag aatcatccca
    25201 tttgagtttg tatttaataa aacttaaacc aaaataacaa aacacagaag acaaagtccc
    25261 tataacaaga gaagcataaa tatctacata accgcaagct ggagtaattc ccacaagccc
    25321 tgctacaagc ccactaagtc cacctaaaat agtcggtttt ttatagatga gccactcaag
    25381 taccacccaa gataaaaagc cgcaagctgc tgatataata cttactataa aagcattgat
    25441 agcaacatca ttcatttcgc cagcacttcc agcattaaaa cctaaccatc ctataaaaag
    25501 caaaatcgca cctaagaaag cataaggaat agaatgcgcg tttttatcct catcatcact
    25561 ttttctagcg cctaccatca aagctcctac aagtccagca accccagagc taatatgcac
    25621 aacaccgccc ccagcaaaat caagacttcc tcttttaagc aaaaatccct cactgctcca
    25681 aatcatatgt gctaacacat cataaactaa agtactccaa aaaagtagaa atatcaccaa
    25741 aacacccagt ttaattcttc ccaccaaaga gcctgttatg atggcagatg caataagtgc
    25801 aaacatcatt tgaaaaatca caaaaagaat atttggaacg cctgaagcgt tgtatccgct
    25861 aataccctct aagaggaaat tctcgaaatt tcctacaagc ccaagtcctt catctttacc
    25921 aaaagaaaga ctaaatccaa gcactaccca ttgtaaagta ataacaccaa aaacaataaa
    25981 gcaattcatt atagtattaa gagtattttt acttcttacc atacctgaat aaaacattgc
    26041 caaagctgga gtcataagca aaactagcaa agtacacaac acaataaaac ttgaatttat
    26101 cgcattcatt tacctgtcct ttcttacaaa aatttaattg cgag
//
LOCUS       DAPIWU010000010        25356 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.010, whole genome shotgun sequence.
ACCESSION   DAPIWU010000010 DAPIWU010000000
VERSION     DAPIWU010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25356
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.010"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..479)
                     /locus_tag="RJ285_000337"
     CDS             complement(<1..479)
                     /locus_tag="RJ285_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7383153.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHS"
     gene            535..1308
                     /locus_tag="RJ285_000338"
     CDS             535..1308
                     /locus_tag="RJ285_000338"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HDV7383154.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPINLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLRQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELNQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            1305..2399
                     /gene="pdxA"
                     /locus_tag="RJ285_000339"
     CDS             1305..2399
                     /gene="pdxA"
                     /locus_tag="RJ285_000339"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HDV7383155.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEELSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFVKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGRGVYLP
                     YPLVADTAFTKTGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(2389..2991)
                     /locus_tag="RJ285_000340"
     CDS             complement(2389..2991)
                     /locus_tag="RJ285_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383156.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            3104..4303
                     /locus_tag="RJ285_000341"
     CDS             3104..4303
                     /locus_tag="RJ285_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7383157.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            4359..4679
                     /gene="ciaC"
                     /locus_tag="RJ285_000342"
     CDS             4359..4679
                     /gene="ciaC"
                     /locus_tag="RJ285_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HDV7383158.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            4863..5885
                     /locus_tag="RJ285_000343"
     CDS             4863..5885
                     /locus_tag="RJ285_000343"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDV7383159.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVGKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            5882..6784
                     /locus_tag="RJ285_000344"
     CDS             5882..6784
                     /locus_tag="RJ285_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HDV7383160.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(6781..7977)
                     /locus_tag="RJ285_000345"
     CDS             complement(6781..7977)
                     /locus_tag="RJ285_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383161.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLVNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(7979..9781)
                     /gene="uvrC"
                     /locus_tag="RJ285_000346"
     CDS             complement(7979..9781)
                     /gene="uvrC"
                     /locus_tag="RJ285_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDV7383162.1"
                     /translation="MTKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFITTNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKRISREKYLEILDEAMHALLNPSILIKNLEKQMLVLAQ
                     NENYEEAAKVRDQIVTIKDLEVKVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKI
                     ISVNSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVYEEFEDRMLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPN
                     DIEIFDNSHLQGMANVGAMVTYSANSWDKSKYRKFHLKHKNDYDQMREVLMRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGARDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLAMLVGKKVAQKIKEN"
     gene            complement(9774..10268)
                     /locus_tag="RJ285_000347"
     CDS             complement(9774..10268)
                     /locus_tag="RJ285_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383163.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAVNKNKNDEKLSKNSYLELSKGEFKNCFEDEKLFKKFEDLRELIKKG
                     SNLD"
     gene            10407..11942
                     /gene="guaA"
                     /locus_tag="RJ285_000348"
     CDS             10407..11942
                     /gene="guaA"
                     /locus_tag="RJ285_000348"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDV7383164.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLGLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGSDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRPSLELLRKADVILLEELKSTGWYDKTWQAFCVLLNIKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEVLENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            12028..13488
                     /locus_tag="RJ285_000349"
     CDS             12028..13488
                     /locus_tag="RJ285_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383165.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKPVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMIADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRNNRLASLEAQMKTLQSEINLKSNAANADPEKLKA
                     RQERLTKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            13728..14978
                     /gene="purD"
                     /locus_tag="RJ285_000350"
     CDS             13728..14978
                     /gene="purD"
                     /locus_tag="RJ285_000350"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDV7383166.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            14975..15427
                     /locus_tag="RJ285_000351"
     CDS             14975..15427
                     /locus_tag="RJ285_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDV7383167.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            15417..17465
                     /locus_tag="RJ285_000352"
     CDS             15417..17465
                     /locus_tag="RJ285_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HDV7383168.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYTVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            17535..19694
                     /locus_tag="RJ285_000353"
     CDS             17535..19694
                     /locus_tag="RJ285_000353"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDV7383169.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHEKNSQIELKNEIEYPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEISNLEIAKEWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKKII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            19691..20173
                     /locus_tag="RJ285_000354"
     CDS             19691..20173
                     /locus_tag="RJ285_000354"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HDV7383170.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(20218..20880)
                     /locus_tag="RJ285_000355"
     CDS             complement(20218..20880)
                     /locus_tag="RJ285_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HDV7383171.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(20898..22082)
                     /locus_tag="RJ285_000356"
     CDS             complement(20898..22082)
                     /locus_tag="RJ285_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7383172.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGIMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            22136..22591
                     /locus_tag="RJ285_000357"
     CDS             22136..22591
                     /locus_tag="RJ285_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HDV7383173.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGESMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNILKNFTN
                     TQNKILKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            22843..24117
                     /gene="porA"
                     /locus_tag="RJ285_000358"
     CDS             22843..24117
                     /gene="porA"
                     /locus_tag="RJ285_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 major outer membrane porin protein PorA"
                     /protein_id="HDV7383174.1"
                     /translation="MKLVKLSLVAALAASAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVSNSNLNNSKQDHKYRAQVNFSAAIADNFKAFVQFDYNAADGGYGANGIKN
                     DQKGLFVRQLYLTYTNEDVATSVIAGKQQLNLIWTDNAIDGLVGTGIKVVNNSIDGLT
                     LAAFAVDSFMAKEQGADLLGQSTISTTQKTAPFKVDSLGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDKTHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLNF
                     SAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(24232..25353)
                     /gene="dnaJ"
                     /locus_tag="RJ285_000359"
     CDS             complement(24232..25353)
                     /gene="dnaJ"
                     /locus_tag="RJ285_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDV7383175.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
BASE COUNT         9040 a         4144 c         3890 g         8282 t
ORIGIN      
        1 taagaatggt aatttttttc ataaaaacta ataataccaa aatcaaaact tttaaaactt
       61 tttccaaaag aaagctcaca agaagcccct cctaaatcac aatacgcaaa ctctccccaa
      121 attttaagcc ttcttaaacc tgattgcata cctaaaacac tgatcttagc ttcacttttg
      181 gcatctataa gcttaaaatc aatcccaaat tcttttttta aatgggcaaa aatttcattt
      241 gtattgcttg cctttctaaa agctgcagtc gctacagctc tcgctttgct taaatcttgc
      301 tctttagcta aaatactcaa agtatttttt aatctttgta tggcttcttt agaaatttct
      361 ccactttgat ttagattttt cgctgcccca ataacaaatt catattcttt taatttattt
      421 aatttttcat ccatttgtac tgctcttaaa gtatttgaac caagatctat acctaacatg
      481 actttcctta tttgatttta tagtataata gcaaaaaagt tctaaaggaa aaatatgctt
      541 ttaggtgtaa atatcgatca tattgcagtg ttaagacaag ctagaatggt aaatgatcct
      601 gatcttttag aagctgcttt tatagtagct agacacggag atcaaatcac tttgcatgta
      661 agagaagatc gccgtcatgc tcaggatttt gacttggaaa atattataaa attttgcaaa
      721 agccctatca atttagaatg tgctttaaat gatgaaattt taaatttagc tcttaaactc
      781 aaacctcacc gcgttacttt agtgcctgaa aaaagagaag agcttactac agaagggggg
      841 ctttgtttaa atcatgctaa attaagacaa agcatagaaa aacttcaaaa tgcaaacatt
      901 gaagtttcac tttttattaa tcctagttta gaagatatag aaaaatcaaa aattttaaaa
      961 gcccaattca tagagcttca tacaggacat tatgcgaatt tgcacaacgc actttttagt
     1021 aatatctctc atactgcttt tgccttaaaa gaactcaatc aagataaaaa aaccttgcaa
     1081 gctcaatttg aaaaagaatt acaaaattta gaactctgtg ccaaaaaagg cctagaactt
     1141 ggcttaaaag tagccgcggg acatggttta aattacaaaa atgtaaaacc cgtagtaaaa
     1201 attaaagaaa tttgcgagct aaatatagga caaagcattg tagcaagatc tgtatttaca
     1261 ggacttcaaa acgctatttt ggaaatgaaa gaacttatta aaagatgaaa aaactagcca
     1321 ttagtatagg cgatataaac ggcataggac ttgaaatttt agtgcgttct catgaagaac
     1381 taagcaaaat ctgcacacct ttttatttta tccacgaaag cttgcttgat aaagcttcaa
     1441 aacttttaaa tttaaaactt tttaatgcaa aaatcgtagc ttttaaagat ggaaaagact
     1501 atgagtttaa ttttgtaaaa aaagaaaatt ctcttgaaat ttactctttc taccttcctt
     1561 taggctttaa agtggatgaa aattttgaaa tcaaagccgg agaaatagat acaaaaagtg
     1621 gactttatgg ttttttaagt tttaaggcgg caagttattt tgtctatgaa aaacacgccc
     1681 atgccttgct tactctacct atacacaaaa aagcttggga agatgcagga cttaaataca
     1741 aaggacacac cgatgcttta agggattttt ttaaaaaaaa tgccattatg atgttaggtt
     1801 gcaaagaact ttttgtaggg ctttttagcg aacatatacc tttagctaag gtgagtaaaa
     1861 aaatcacttt taaaaattta agtatctttt taaaagattt ttacaaagaa acacatttta
     1921 aaaaaatggg gcttttaggt tttaatcctc acgctggaga ttatggagtt ataggtggag
     1981 aagaagaaaa gatcatggaa aaagctatag cctttgttaa tgccttttta cactctaaaa
     2041 aagatgaaaa atttttcaaa aaagccttaa aagatgaaaa tttacaaaaa gaattgcttt
     2101 taaattttaa aggcaggggc gtttatctac cctatccttt agtggctgat acagctttta
     2161 ctaagactgg tttaaaaaac tgcaatcgtt tagtggctat gtatcacgat cttgcccttg
     2221 ctcctttaaa ggccttgtat tttgataaaa gcatcaatgt aagtttaaat ttacctatca
     2281 tacgcgttag cgttgatcat ggcacggcct ttgataaggc ctataaaaat gctaaaatca
     2341 acactaaaag ttattttgaa gcggctaaat ttgcaatcaa tttacattct aaagcttaaa
     2401 tttagcccta gaatcaatca aatcttcttt agctaagctg tctataaaat cttgcaaatc
     2461 tttattggta tttaaacttt gagtgagtaa attttcatat ttatcaactt tatttttaaa
     2521 aatttgctct aaaacttctt tagtctttgt atcttttttt gctctttgca taagttctaa
     2581 taaaacctta atataagctt cttgcatgca atcacttgca ttgagtaaag ataaaatagg
     2641 attttcccct gcttttgtat tttgcatatt ttttatacaa atttttcttt ctttaagcat
     2701 cttttttgaa atggctttaa aatctttttt catcttttta tctgcttttt ttgaaatatt
     2761 ttgatataaa ctactataga tgttatctac taaagcaagt tttttattat caaattcatt
     2821 acgcacacca attttattgc atatcataag ttcatcatca cttttgccat catatttgat
     2881 tttagagcaa tcaaaactag gttttacttc atctttataa ataagctcat caaaactcaa
     2941 agcccctaaa ctcgccaaac ttaaaccaag caataaaata atttttttca ttatttacct
     3001 ttaaaatttt tattttattt taacaaaaat attttgaatt ttttaaggaa attaagcctt
     3061 tattttatta taatgcgttt ttatttttta taaggaactt aaaatgcaaa attacaaaaa
     3121 agctcttttt gcactagctc ttagtgcttt ttgtatgggc gtaactgaat ttgttatggc
     3181 aggagttttg gttgatgttg aagcgtattt tagcgtagat gcaaaaaccg cgggctatct
     3241 tacaacctta tatgctatag gtgttgttat aggtgctcct cttatcacca tacctttaag
     3301 tcgttttcat agacatacac aacttttaat caatcttgga atttttgctt tagcaaattt
     3361 catcatcttt tttagccaaa atttctatct tactgctttt gcacgcttta tagcaggaac
     3421 acaacatggg gtattttttg tcattgccac cttagctgta agtgctataa ctccagatga
     3481 taaaaaatca agtgctctag ctataatggt cacagggctt actgtagcct tagttactgg
     3541 agtgccgctt ggaactttta tagggcatta ttttggcttt aaatttatct ttttactcat
     3601 ttttatcatt acaagtctag cattttttgg agtatggcat atgatgccca aaaatttaca
     3661 tcctagccca accagtctta aaaatctaat ccctgctttt tctcatcaaa atttgttaaa
     3721 aacttatact ataaccattt gtagttgtgg ggctcaattt gttctttata cttatttgca
     3781 aaaaatactt gtagaaataa gcggttttaa agtccaagat acagcttata tcttgctttt
     3841 atatggaatt tgtgcaattt gtgggaattt atggggcgga aaaatagtag ataaaaaagg
     3901 tgctattttt tctttgcgtc ttattttaag catacaagtt ctagtatttt taagtgtatt
     3961 tctcaccatg cattctaaaa ttttaatcat ttttagcgta gctttgatag gattttttgc
     4021 cttttcaacc atacctgcac taaaaatgct tagcattact aaagctaaac gccatactta
     4081 taaagtcata gacagtacag taagtgtgaa tgaagcagct tttaatgtag gcatagcttt
     4141 agcaagtttt ttaggtggga ttgttttagc aagattgggt atagaattta atgctttatt
     4201 ttcagcactt tttgtaagcc ctgctttgat ttttgccttg ctttttgcca aagataaatt
     4261 aaattataaa aaatttcaaa gaaaaagttt tacaaaggta taaattggaa tagaaattgc
     4321 ttgcttattt aatgtaaagt taaataaagg aggagaaaat ggtagtagat aatactcaaa
     4381 aaacatcaaa tgctatcttt agcaccacaa ctaaagttaa agaaaaaaat acttcggcag
     4441 atgaatttca agccacatta aatgaagtaa aaaataaaga agaaaaggaa gataaaaaaa
     4501 caaactcaag caaatttact aacgaagaca ttgatcttgg tgctgttaga gaagatttta
     4561 gatcttatgc ttggcaaaaa atgagagaag atcaatacaa aaaaaatgag gagactttgc
     4621 taaataagct ttttactaca attgacgcag gaaatgccac aaacaataca aaggcttaat
     4681 atacaaatca atcaaaactc aaactacata aacgagaatt ccaataattc tcgtaaaatt
     4741 tctaataact ctggataaaa tgaaaaaatt tattatttcc tctatatgaa gaaaatatag
     4801 aaaaattgac caatttaatt tatcaaattc tgttataatt ttgctaaaaa caaaggaaaa
     4861 taatgatttt tatcgatgct tgctttaaaa aacctacacc ctacacccct atttggatga
     4921 tgcgtcaagc aggaaggtat ttgccagaat atatggaagt aagaaaacaa gcgggtgatt
     4981 ttctctcttt atgcaaagac tataaaaaag cttctgaagt ttctttacag cctattgata
     5041 ttttagatgt agatgcagca atcatttttt cagatatctt agttgttcct cttgaaatgg
     5101 gtatgaattt acgttttgaa aaaggagaag ggcctgtttt tgataatcct atttcaaccc
     5161 tagaagattt agaaaaactt gacgatcaaa atgcacataa aaaattaaat tatgtctatg
     5221 atgccttaaa gcttacaaga gaaaaattat ctcaaaacaa ggctttaata ggattttgcg
     5281 gaagcccttg gactatagct acctatatga tagaaggaag tggaagtaaa aattatgcaa
     5341 agtgtaaaaa aatgctttat caaaacccag aacttttaca taaaattcta aacaaactaa
     5401 ctcaagtttt aaaactttat ttagaagagc aaattaaagc aggtgctaat gctatacaaa
     5461 tttttgatag ctgggcaagt gctttagaat atgataagtt ttttgaattc tcttttaatt
     5521 atatgcttga aatttcaaat tttattaaaa gcaaataccc aaatatacct gtaattttat
     5581 tccctaaagg cattagcggt tatttggata gaatcgatgg taattttgat gtttttggag
     5641 ttgattggag cactccgctt gatttagcac gtgataaact atcgcacaaa tacactcttc
     5701 aaggcaacat ggaaccttgt agactttatg ataaaaatgc catcaaagaa ggagtcggaa
     5761 aaatactaaa aaccatgcaa aataaagctc atattttcaa cttaggacat gggatcttgc
     5821 ctgatattcc tgttgaaaat gcaaaatatt ttatcaagct tgtacaagaa agttcagcta
     5881 aatgaaaata ctctttggtc ctgttagctc aaggcgtttt ggaagatctt tgggtataga
     5941 tttaagccct agtaaaaaac aatgcaattt tgattgtgtt tattgcgagc ttgatccaaa
     6001 aaaagcccaa gaaaaacagg atgaaattat cagcatagat aaaattatct ccgaagttaa
     6061 agttatgctt gaaaaaaatg ttgaatttga ttttcttacc cttactgcca acggagagcc
     6121 tagtctttat ccttatttaa atgagcttat tttatcttta cgcagcattg ctaaagataa
     6181 aaaattgctt attttaagca atggtacagc tgtattagat gaagacaaat ttaatgcttt
     6241 gctaaaacta gatgtggtca aatttagcct ggatagtgca gttgctaaaa ctttttatcg
     6301 tattgataga gctttaaaaa acattgactt agaaaaaatg atagaaaaaa tggcagattt
     6361 tagagctagg tttaatggag atttgattat ggaaattcta gttgttaaag atcttaatga
     6421 caacgaagaa gaatttgaag cacttaatca agctttaaaa aaaatcatgc ctttaagagt
     6481 tgatctaagc accatagata gacctcctgc ttatgctgtt aaaaaagtaa gcgaagaaaa
     6541 acttttagaa ctttctaaac ttatagattc tactcccgta ctcttagcca aaagacatta
     6601 tgaaggtgaa aaactaagct tcaatgaaga agaattatta aaaatgcttc atttgcgctc
     6661 acaaagcgaa atagacattg aagtgaaatt tgatgaacaa tccaaaactc tcttaaatca
     6721 acttatcaaa gaaaaaaagg taaaaattct cgatttagct ggagttaaat tttataaagt
     6781 ttaggccttt ggcaaatact ttctaagtaa agttataaga tcatttctac ttacatcact
     6841 taaaacttcg ctcacacaat caaaatccct aactttttcc tttgaaaaaa agatgatatg
     6901 gctttgtgga tgctgttttt tataagcact tagcaaattt ctcatttgct caagatcaaa
     6961 tttaattaat tcataatcaa gtaaaatcaa acgataagtc tccttgctta attcttgttt
     7021 taattgacta aaagaattta tacatatatt tttatcacat tgtttttcta ttatattaaa
     7081 aaacaaggtt gcatcaaaat cattttgttt aaaaagcaat acattatttt gataaggggt
     7141 tttaaatttt aaagtgcaaa ccttatcaag cttgttttgc aaaatatttt caagatcttt
     7201 tttttcaaaa ggtaaagtta aaaaatactc ataatgtgta tttttatgcc gacccatcac
     7261 tataaaatca taatttttct ttacattttt attgaaaatt ttatccttga taaaaatcaa
     7321 atgaaagtca ttaacatcaa aacttaaatt tttaaaacaa gtgctttcta tgccaaaata
     7381 cgaaagtaaa tttgcaagta aaaaattctc aagctcatca ttattaacta tggccacact
     7441 tgcttcaaat tgcaaaacct ttccatgaga tgttcctata atgcttttat gatgctctaa
     7501 agcctcattt aattctaatc taatttgatc tttttgagaa tttaaggcat ttaaaatcaa
     7561 agaattaatt tctttattat acccttcatt taagcaacgc attgcattag atatatttac
     7621 aagctgatat aaattttcct ccaataaatg caaatatcta tctttttcat gggatatttt
     7681 agttaaattt tggctcgtag tttcaaattt ttcctttaac aaatcaagcg cactatcaac
     7741 atcaatcttt ttttgaaaat ttaaaaaatc attttgcatg caaaaaattt tttgatatat
     7801 tttgtttata tttctatttt gcctaaaagc aaaaataaaa agtgttaaag ataaaacaaa
     7861 aatgctagaa aacataccta ttttcagttg ttcagtaaca ctatcaagct ttgagatatc
     7921 aatacttaaa tacgctaaaa ttagattaaa aataaaaatt atccctgcta atatcaaatc
     7981 aattttcctt tatcttttgt gccactttct tgcctacaag cattgcaaga tctttaaaat
     8041 cagccttata tatagattca aaatttccat aatacgctaa aagtttttgt ataacccctg
     8101 aactaagtcc taaatttaca agcttagaac tattcaagtc ctgttttttc ttagtatttt
     8161 gatgaaagct gatagcaaaa cgatgcgctt catctcttaa tttctgtaag aattgtagtt
     8221 ttttatcgtt aatacttagg ctaaattctc cttttaagga atgaatttta tctctagcac
     8281 ctcctttagc cctatgtgct tttgcatcga ttttttcttt tgaaatagct aaaatatcga
     8341 catttgcccc actacttaca atgatttctt tagccaaatc aagcaaagcc ttgcctccat
     8401 ctataagcca taaatcagga gggggtattt tatcaaagtc caaagcccta cgcattaaaa
     8461 cttcacgcat ttgatcataa tcatttttat gttttaaatg aaatttgcga tattttgact
     8521 tatcccaaga atttgcacta taagttacca tagctccaac atttgccatg ccttgcaaat
     8581 gagaattatc aaaaatttct atatcatttg gtaaattttc aagctcaaaa taagacttta
     8641 attctttttg tatagtaaaa tcatgatttt tttgctcttt ttctatattt aaaagggcat
     8701 tttgaaaagc caaatcacaa attcttcttt tttctcctat tttagggatt ttaatactga
     8761 tttttttatc aaacctttgg cttaaaattt cttctaaaag cattctatct tcaaattctt
     8821 cataaacata aataacattt gcaagcaaag gaatatccat gctaaaattt tctaaaatca
     8881 gttgcttata aatttcattt ttatcccatt gtatatcatt ttttatagga gtaatcttag
     8941 aatttacact gataattttt ccattttgca ctacaaaacg caaggttgaa agcatggaat
     9001 tttcaaaagc taaagcaaat acttcaaaat cttctaattt tgcaatatct atttcaacct
     9061 taacttctaa atccttaatc gttacaatct gatctcttac tttagctgct tcttcataat
     9121 tttcattctg tgctaaaaca agcatttgtt tttctaaatt ttttattaaa atactaggat
     9181 ttaaaagcgc gtgcatagcc tcatctaaaa tttcaaggta tttttccctg ctaatgcgtt
     9241 tatcacaagg cgcaagacaa cgagaaattt gataaaaaat acaaggggat ttacaacttg
     9301 ctttttgctt taaaggatag tataaataaa gcgcatctaa aagctctcta gcgcctttaa
     9361 aaaaagggcc aaaatattta attttgcttt tttttactaa ttttctagtg atctcaaagc
     9421 gtggaaattc ttcttcaaaa tccacataaa tataaggata agttttatca tctcttagta
     9481 aaatattata ttttggatgc agttgtttga taaaagaatt ttccaaaatc aaagcatcgg
     9541 cttctgaatt agtagtgata aattccaaat gcactgtttc ttcaatcatt ttttgaattc
     9601 ttaaagaatt tcttgggttt gcatgtaaat ttggagtaaa agcgaaataa gatttgacac
     9661 gatttttaag atttttagcc ttacctacat ataaaagctt tccttcttga ttaaaatatt
     9721 gatacactcc agcactatta ggaagagttt ttaactcatt ttctaaattc tctttagtca
     9781 agattagaac ctttttttat aagctctctt aaatcttcaa atttcttaaa taatttttca
     9841 tcttcaaagc aatttttaaa ttcaccctta gaaagctcca aataagaatt tttagagagt
     9901 ttttcatcat ttttgttttt atttactgca taagtgtatt tttgagaaaa gatttttata
     9961 tcttttatat caacaaatcc acttaaagga tatttttgtc catacgcttt tatgagaaat
    10021 ttaatataaa ttttgctatc atcatgattt aattcttgat aagctgctgg atgtaaggtt
    10081 attatattta aaatatgatt ttttacataa attttagcaa tcaaacgttg cttagcaagc
    10141 ggaaaagaac ttaaaaaatc tttgcaaaaa aataaggttt ttaaaggctt ataatgaggt
    10201 ttatccatca attcattaat aacagcacta gcgtttttag tcatcttaat attatttctt
    10261 tttcccataa gatgatttta gcatttcttt tcttaatttt cttctgtgct tgcggatata
    10321 aaggcaaccc tcaatacaca agctatgaac aaaatggttc ggtaaaaacc attaaaaaat
    10381 acgaacaatt acataggtgg taaataatga aaaaagcaga tattttagtt ttagactttg
    10441 gctctcaata cactcagctt atagcaagac gcttaaggga acaaggagtt tatgcagaaa
    10501 ttttaccttt taatgtgagc ttagctgata ttaaggcgaa agaaccaaaa ggtattattt
    10561 taagcggagg tccagcaagc gtatatgcaa ctgatgcgta tttttgcgat aaaggtatat
    10621 ttgacttagg tttacctatt cttggaattt gttatggtat gcagcttatg gcacatcatt
    10681 acaaagctac agtagcacct gcaggacata aagaatacgg caaagcaaac atagaagtta
    10741 aaaaagatag cgctttgttt aaaaatcttc caaaaaaaca aactgtttgg atgagtcatt
    10801 ctgataaggt agaaaattta cctcaaggtt ttgaagtttt agccacaagt gaaaatagtc
    10861 ctttttgtgt ttttggaaat gaagataaga aattctttgc tctacaattt cacccagaag
    10921 tacaacacag tgaatttggc aaaaatatct taaaaaattt tgctaaatac gcttgcaatt
    10981 gtgaaagcgt ttggaatatg ggttcttttg caaaaactca agcagaaaaa atccgtgaag
    11041 aagtaggcag tgataaagtg ctttgcgcag taagtggcgg agtagatagt agcgtagttg
    11101 ctgcactttt agctagcgct ataaaagagc aagttatagt agtttttgta gacaatggac
    11161 ttttaagaag tggagaaaaa gaacaagttg aatttatgtt taaaaatacc ttaggtatcg
    11221 atcttatcag cattgatgca agtgaaattt tcctaagtcg cttggctaat gttagagatc
    11281 ctgagcaaaa aagaaaaatc ataggaaata cctttataga agtttttgaa gaagaagcaa
    11341 aaaaacataa agatgtaaaa tatctcgctc aaggcacact ttatactgat atcatagaaa
    11401 gttctgttgt aggtgcaagc aaaaccatta aaagccatca taatgtaggg ggcttacctg
    11461 aaaaaatgaa tcttaaactc atagagcctt taaaagaaat ttttaaagat gaagtgcgtg
    11521 ctttagggct tgagcttgga cttagcaaag aagtggttta tcgccatcct ttccctgggc
    11581 cagggcttgc tatacgcatt atgggagaag taaatcgccc tagcttagaa ctattgcgca
    11641 aggctgatgt aattttactc gaagaactta aaagtacagg ttggtatgat aaaacttggc
    11701 aagcattttg cgtgctttta aatattaaaa gcgttggggt tatgggggat aaccgcactt
    11761 atgataatgc agtttgcata cgcgttgtag atgcaagcga tggtatgaca gctactttct
    11821 cgcatttacc ttatgaagtt ttagaaaaca taagtcgccg tatcatcaat gaagtagaag
    11881 gtataaaccg cgttgtttat gatatctcaa gcaaaccacc tgcaaccata gaatgggaat
    11941 gatccatttt ttctagctct tatttttatt ataaaatttt tataaaaata aggctagaat
    12001 ttattcaaga aatttcaagg aagaaatatg catggaaaaa tagctattta tatggattct
    12061 acaggacgtg gaaccgttac aaactcagca aatacctttt ttgacttcaa tcgccaaatt
    12121 tggaatgata aaaaaagtat gccaagtgtt ggtatgcttg tggaatttag aactctttct
    12181 agcgaaaaaa aagcagaaga cggcaagccc gttcaaacaa gcaaaaccat aacaggtata
    12241 aaaccttcaa aatttcaaga atttaaagaa ggggatttta tcactgagca tgatttttgg
    12301 aaaactgata atgatgatga attagaagac ttgcaaaact caagaagaag tgcttatata
    12361 acagaacttt atagaacgac agactttgac actatagaaa aaattcctct ttcttttact
    12421 atacctcaag ctatacaaaa atattttgct catgaaattt tatccgtaga aacacttcaa
    12481 gccaatctac aagatgaaaa ggaaattccc tgcatacttg attatcttat acttaaaaga
    12541 tttttattta aagcttatga tactttaatt tttatggata atagcataga ccaaacccaa
    12601 tttagcgcat taaaaagcat catgatgcat ttagagaatt catacaagca aatgatagct
    12661 gatcaaaaac caaatatcac taaaattttt aacgaaactt ttttatcttt gcagtgtcat
    12721 taccaagctt tagtagccac catagataca agaaacaatc gtctagcctc acttgaagca
    12781 caaatgaaaa ctttacaatc tgaaataaat cttaaaagca atgcggccaa tgcagaccct
    12841 gaaaaactta aagcacgaca agaaagattg actaaactac aaaaagaagc agaatactac
    12901 agaacaacac taaaaagact tgatgctata agggaagatt tttataagaa aaattacaat
    12961 attttcgaaa atgcttttaa actttcacga gaaaagctct ttaaaaaaat tgtcacaggt
    13021 ttaaatctat gcgcaaccat aatggatgtt aaaatttggc acttatcttt aaaatcatca
    13081 ggggttaaaa attcttattt tactatgagt aatatagaaa attctttctg ttctctttct
    13141 tttgcagaac attacttaag tcgcttaaat aaatccgctc taaatccttt tgatcaaaaa
    13201 cttttagtgt atattcaaaa aatcacaaaa gaacaaagaa aaaaattttt agttgtcaca
    13261 tcggatttag atttattatg caaattaaaa attgaaaact tttcacaaaa tccgtattat
    13321 ttagtaaaat acgcacctaa aaaagtgaat tatcagtctt taatgcgtga taacaccttt
    13381 gatatagtct atattgatga aaaacatgtt tgggaaaatg ttgccgatat tattttacaa
    13441 ggaaagcatt ttgacaaatc aggaaaaacc aaatttaaac tgatttaaga catagaaatt
    13501 taagctaaat taagttataa tttccttgcc taaacagttt gtggtattta aagtgatcca
    13561 acacattttt attaactgcg attgtgtgat ttaccgtgtt ctgtggcatc gtttgagctt
    13621 tgaaaaaagt gagaagttgc agcctttaaa aattacctag cggttttctt tgactttttg
    13681 gggtcaatct ttgttaaacg gctgtttggg tttaaaagga gatataaatg aaaataatga
    13741 ttttgggtag tggtgcaaga gaatattcta ttgctttagc cttaagaaga gtagacaaaa
    13801 atttagagtt ttattttgct cctggaaatg gcgctaccga aagtcttgga acaaatttaa
    13861 acctaaaaga tccagtagtt ttagcaacct atgcaaaaga aaaaggtttt gatctttgta
    13921 tagtaggaag tgaaagtttt ttagctgaag gggttgtaga tatttttaaa caacaaggac
    13981 ttgctatttt tgggccaagt aaagctgctg caatgcttga aacctcaaaa tcttttatga
    14041 aaagctttct taaaaaatac cgtatcaaaa cagccaaatt tttaaacaca aatgacattg
    14101 aaaaagcaaa aaattttata tatagtttaa cccctcctat agtagtaaaa gccgatggac
    14161 tttgcgcagg aaaaggtgtt atcatagcta aaactcatga agaagccata gaagaaacag
    14221 ctaaaatgct gagcggagaa agctttggag atgctggaaa actcgttgta attgaagaat
    14281 ttttagatgg ttatgaatta agcatttttg cagtatgtga tggcaatgat tttgttttac
    14341 ttcctgcagc acaagatcac aaaaaattac tcgataatga tcaagggcca aatactggtg
    14401 gaatgggtgc ttacgctcct agctctttgg cgaatgaaag cttgcttaga aaagttcaaa
    14461 aagatattat tttaccaact ttagcaggta tgaaaaaaga aggagcggaa ttttgtggtg
    14521 ttttatttat aggtgctatg atcgttggaa ataaacctta cgtattagaa tttaacgttc
    14581 gctttggcga tcctgaatgt gaagttttaa tgcctttaat cgaagatcct ttagagctta
    14641 ttttagctgc tactcaaaga cgcttaagac actcaaaaat caaaatcaaa aaagaatttg
    14701 cagtaggggt tgtatgcgca agtgaaaatt atccttacaa aagttcacca aaaagtgaaa
    14761 ttaccgtaaa taacattcct gaaaactctc atatttctta tgctggagta agcctagaag
    14821 atggcaaatt aatggctgat ggtggaagag ttttagtttg cgttggcaca ggaaaaagta
    14881 tagaagaagc gcaaaaaaat gcttataaac tttgtgataa tgtaaatttc aaaggaaaac
    14941 aatacagaaa agacatcgct catcaggttc tgaaatgaaa gaaaatttac aagaccgctt
    15001 agagcgtgaa aatctaaaaa tagcaagttt tggaaaaaga gttctagctt ttttaattga
    15061 tgatatggtt atttctttga ttgtgtttat cattttttat gatcgtctaa tccaagcaaa
    15121 agatttattt gaaacaactc aaattgtagg aaatttttac cttggcttca tcttgcttca
    15181 ttttagttat caagcaattt ttacttatct ttatggagca agtttgggaa aaatattatg
    15241 caaaattatc atcttggatg aaaatcttct tgacaaaccc aatctcattc aaagttgcat
    15301 caggtctgcc gtaagacaag ttagtgctat ggcgtttatg cttggatttg cttgggcttt
    15361 aagcaatgat ttacgcaaag cttgggagga ttatctagca aggacaatag tagtcgatgt
    15421 ggcgtaaatt ttccctattg ctaggaacta gcatagcttt aaatgcagca caagttgata
    15481 tttacgctct tgatgcaaaa aaagaaggtg atattcttac tgcgaacaat gatgttatta
    15541 ttttttctga tttttatttc atcactgcca ataaagcaat ttacaatgaa aaaaccggag
    15601 atgttgagct ttttggcgat gttaacatcc taaggggaca aaacgaaaga tcacattctg
    15661 attatgctaa aatcaaccta aattccaatc aagccgattt tagtaatttt ttcttttcca
    15721 ataacaatct tgaagtatgg tttcaaagca aaacaagcca tctaaatgat aaagtctttg
    15781 aaagcaaagt ttcagcagtt tcaagctgca atgttgaaga tcctgattgg gaaattcgtt
    15841 tttcaaaagg ctggcttaac cgggaaacca attttgttca tctttacaat gcaagattat
    15901 atgttaaaaa taccccagtt ttttatctac cttattttgg atttagcgct gatactcata
    15961 gacaaagcgg gcttttaatc ccaaaaatcg ttttaaaaag tagcgaaggc ttatactatg
    16021 aacaacctat ttatatagcc actcaagaaa attgggattt agaacttgat ccacaaattc
    16081 gaacaaaccg tggttttgga ctttattcta ctttaagatt tcttgattct ccatattcaa
    16141 caggagaatt aaattttggt gcttttaggg aaaatagctc ctattttcac gatgaaaatt
    16201 tgaaaaatca aacccactat ggaatagaac taaaatactc aagagatgat ttaatcaaat
    16261 ctttactcag tgataatttt caagaaggcc tatggataga tgcaacctat ctcaacgatg
    16321 tggattattt aaatttagga agtagggatt atcgagatct taactcgctt gtaacctcca
    16381 aaatcaatta ttttttagct gatgaaaaca atttttatgg agcttatgca agatattata
    16441 tcgacacatc taaacttagc aacaatacaa ccttgcaaga atatccaagc tttcaatatc
    16501 atagattttt aaataacctt tttgatgaac gcctgcgtta ttcatttgat gcttcatttc
    16561 ataattttta ccgacctgct ggttcttatg caaatgagct aaatttagac ttgcctatct
    16621 cgtatcacaa cgcttttttt ggagactttt tacactttac ttttacagaa agattttatg
    16681 cttcttttgt aaattatagc aacgatcccg aaagaaacca tgagcattat ttcagaaaca
    16741 ctcatgattt taatctctac accgatcttt caaaagctta tgaaaatttc tttcatactt
    16801 taaatttagg ggtgaattac attttaccag gagcaaaatc aggtaaaatc acgcaagatt
    16861 atcttgaaga atacgacaaa gaaaacgaac atacaagtct ttatactgtg caatatttct
    16921 ataacaacga aggacaaaaa aaactcaaac acagaatttc acttgactat ctcaataaac
    16981 aaaatgaatt ctatgaactt gaaaatcttt taacttatta ttttaatgaa aacatcaatc
    17041 tcaacagcga agtgctttac tcttatgagc aaagtcgctt taccaatgtc atcagccaaa
    17101 tagaagtcaa tacaaattca aaatttaatt ggatgttttc tcatgcttat caaaacgatg
    17161 agtatggaaa atatagcttt attggtacaa gagcaaatta tattgccaca cctaattaca
    17221 atttatttgg tggaatttgg tttgatactc aaagagctca tgcaaacatg tgggaacttg
    17281 gctataccta ccaaagaaaa tgttggaact attctttaat gtatagagaa agaatcgatc
    17341 cacaactcac aagtggtggc atcacagcta aaaatcaaag cggagtttat tttattttca
    17401 acttctatcc tttaggagga gtaaaatacg atttctcttt agcagaaagt gaaaacaaaa
    17461 tttaaaaagg atgaaatttg ctaaatattt taaaaaattt tacgaattta ttatctggta
    17521 aaaaaggaaa aataatgcaa tacagcatag aaattaacaa aaatacagaa atatttgata
    17581 tagacaaagt cgccaaacaa gctgccggtg ctgttttaat gagacaaggc aaaagcgttg
    17641 ttctagctac agttgcaaga gaagaaaaac aagttgaaga agatttttta cctctaaccg
    17701 tccaatacat cgaaaaagct tatgccgcag gaaaaatccc tggtggttat gtcaaaagag
    17761 aaaccaagcc aagcgatgca gaaaccttaa cagcacgcat tattgataga agcttacgcc
    17821 ctctttttcc aaaaggctat gcttatccga ctcaaatcgt tgtgatggtt ctctcagctg
    17881 atcctaaagt agatttgcaa gtaatgagct taaatgccgc aagcgtggca ctttatctta
    17941 gtgatatacc tatgaaagct ccagtatgtg gtgtgcgtat aggaaagata gatggaaatt
    18001 tcatactcaa tccaaacaat gaagagcttc aaaatagtac cctagatctc tatgtagcag
    18061 gtgtaaaaga tgagcttttg atgatagaaa tgagagcctt acctgatcaa aaagaaaatg
    18121 aaatctttat cgaagctcct tatgctgatg ttttaactca aaccacttca caaaatatga
    18181 atgaacttag cgaagatgaa attttagaag ctctaaattt agctcaaaaa gctatattaa
    18241 atggttcaaa tgcttatgaa gaagccttta gcaaacacga aaaaaattct caaatcgaac
    18301 taaaaaatga gattgaatat cctgaaattt tagcttttat agaaaataat ttccaaaaac
    18361 aaatcaaaga agccatcaac caaatggcaa aaagcgaaag agcaagcgaa ctaaataaaa
    18421 tcgctaaaga aatttcaaat cttgaaatcg ctaaagagtg gagcgaagaa agtgtcttaa
    18481 ataccttagc taaagtcaaa cgcaaactta ttcgtgagca aattttaaat gaaggcaaaa
    18541 gagctgatgg tagaagttta aacgaagtgc gtcctattaa tatagaaacc aacatcttac
    18601 caaacgctca tggttcttgt cttttcactc gtggacaaac tcaagcccta gtggttgcaa
    18661 ccttaggcgg agaaaacgat gctcaaatga tagacttgct tacagaaaaa aatcctataa
    18721 gcgaacgctt tatggtaaat tataattttc caggtttttc agtaggcgaa gcaagtccta
    18781 tcaaagctcc aggaagaaga gaactaggac atggaaattt agccaaaaga gcactttatc
    18841 caagtgtgga tgaaaactat ccttatgtaa tccgcttagt cagtgaaatt ttagaaagca
    18901 atggctcaag ttctatggca acggtttgcg gcggatcttt agccttaaaa gcagcaggag
    18961 tgccaagctt aaaacttgtt gcaggagtag ccatggggct tatctttgaa gataacaagt
    19021 atgctgtttt aacagatatc atgggacttg aagatcatga tggggatatg gactttaaag
    19081 tagcaggaag caaagacggc gttactgctc ttcaaatgga tataaaacta ggtggaatcg
    19141 atcaagaaac actaaaacaa gctttatacc aagccaaaga aggaagaatt cacattctaa
    19201 atatcatgga agaagccgcc aaaaaaatca tagtcaatga agaagtttta cctaaacttg
    19261 agctttttag cgttgatcct tcaaaaatcg ttgatattat aggacaagcc ggaaaaacca
    19321 tcaaagaaat cgtagaaaaa tttggcgttt ctatagactt agatcgcgaa aaaggtgaag
    19381 taaaaatagc aggtagtcaa aatgagcaaa tcaaagccgc aaaagactac atcataaaca
    19441 tcacaagctc tcaaaaagga actaaaaaag gctctaaaga caaagatata tcaggctttg
    19501 aacttgggca agaatttcaa ggtattgtta aaaaaatcgc tccttttgga gcctttgtgg
    19561 aacttaaaaa tggtgttgat ggtttattgc atagttcaaa aagcaagcat cttaatttaa
    19621 gcgaaaacca aagcttaaaa gttaaaatca gcgaaattaa aaacggaaaa atttctgtgg
    19681 atttgtgtga gtgagcgaat ttctaactca tccttttgag cctttttttg acaaagattc
    19741 taaaatctta attttaggat cttttccttc ggtaaaatca agacaagatg gcttttatta
    19801 tcaacaccca agaaatcgtt tttggcctat actagaaaca ctttttgatg taagattaga
    19861 aaatatcaca gaacaacaag cctttttaag aaaaaaacat atcgctcttt gggatgtact
    19921 tcaaagttgc aagataaaaa attcagatga taaaactata agttatgcaa aagccaatga
    19981 tttaagcccg atcctttctc aaaccaaaat ccaagccatt tttactactg gacaaagtgc
    20041 ttataaattt tttattaaat tccaccctcg cttaaaagcc atagctctac cctcaacttc
    20101 tcctgcaaat ttaaattttt cttttgaaca gcttttacaa aactatgaaa taatcaaaaa
    20161 atttacaaaa taacaaacta agcattaccc ccccccccaa gtaaaacaag aaaaaagcta
    20221 gttaatatct agcttttgcg tgttatcctt gaattcaaat tccactctct tagctccaaa
    20281 acctttagca atagcttcta aagtatcctt agcactttta tgaattttac tttctaaatt
    20341 ttggataaga tttaaagaca agtctttaac ctcatctttg gcttctttta tgagtttgtt
    20401 tttatcactt tcgctaaaac taatccccgt actattgata gaatcaggca gtaaaaaagg
    20461 taaaaattta gcattttttt catcataaaa tttcatatct atgatgctgt gtttgtatct
    20521 acactctggc atgatgatct tataagcatc gtcccctaaa ggcaaaatat caaagttttt
    20581 atcccttaaa tcatacaaga aagtgatctc aaattcaaaa atcaaagcaa tctgtctttc
    20641 actcaaagac catcctaaaa gatttttcca aattccatta aaagcgctat cttttttagt
    20701 gacaatctct ttactaaaaa cttgaaaaac acttaattct cctatggatt taagctgcat
    20761 gatatcgcta aaactttgcg tgcttttttc ttctatttta gggcttttat actgcctaaa
    20821 aagcactaca aacaaaagta caagtaaaat catcactaaa acaaataaaa tcatttccat
    20881 tttaaacctt tctaaattta taaaccttga tttgaaaaga tatatttttt ctcaaacgct
    20941 aagaaaataa aagcattaat gataaaaatc aaacacacaa aagtaaaaac aaattccacg
    21001 ctaaaatgtg aagccataat ccctccgcca aaagctccac aaaaatttcc caaaaattga
    21061 caagtttgat taaaaccaaa aatcacactt aaatttttag cactcacact ttttttaagc
    21121 aaggcattca cacaaggcaa aagccctcca agtcctacac ctataagtaa acgcacgaaa
    21181 ataagcgtat aaacattact tactacagcc tgcaaataaa agcaaattcc acaaaatatc
    21241 aaagctccaa aaataatctt actaggccct atcttatcgg cgatttttcc aagttttggt
    21301 gcgaaaaaaa gattgctaat cccacttgca gccactacta tacccgccca aagagccaaa
    21361 tttccacctt gatgaatttg ctcaacatag atacttaaaa tcggcatcac tccaaaagta
    21421 ccaaattgta tcacaaaagt agtgataaaa agaacgataa taagggtttt gttttctttc
    21481 actttttgag tatttttctt cgcctctttt tgaatttttc tctcatggat gaaaaaataa
    21541 atcgtcacaa aagaacaagc gatcaaaaaa gccaccatat caaaaaccgt actaatacta
    21601 aaaaattcag ccacaaagcc accaaacaaa ggcccaagca aacttccact tatagaagcc
    21661 gtagaaagag ttcctaaagc ataagccact ttttctttag gtgctatcac agcgataaac
    21721 acaacagcag cagaagtaaa acctgaaatt atccctgtta aaccccgcac aaaaactact
    21781 tctaaagcac tatgagcaaa gctaagccat aaggttaaaa ccgacatccc aaaacttgca
    21841 cgaagaagca tatttttata accatacttt gcacccaaaa aagcccacaa aggtgaaaaa
    21901 acagccataa aaagtggagt gatcccaaaa gcaagccctg agtaaaacgc tatttcactc
    21961 gtatcaacat gtcctagttc tttgatataa aaaggcaaaa tcggagcgat ttgactaagc
    22021 cccatacttg tggtaaaaac accaaaccaa cacacaagca aagttctatt gaaattttcc
    22081 atggatttat tgtatgatat tttttataat ttttaattaa aactcaagga taaaaatgaa
    22141 aaaaatactc tttatatgct taggcaacat atgccgttcg cctatggcag aatttatcat
    22201 gaaagatctt gtcaaaaaag caaatttaga aaaagaattt tttataagca gtgctggaac
    22261 ttcaggagaa cacgatggag aaagtatgca ctatggcacc aaaaacaaac ttgctcaact
    22321 taatatagaa cacaaaaact tcacaagcaa aaaactcact caaaaacttt gtgatgaaag
    22381 cgatttttta atcaccatgg acaattctaa cttcaaaaat attttaaaaa acttcaccaa
    22441 cacccaaaac aaaattttaa aaatcactga ttttagtcct agtctaaact acgatgaagt
    22501 ccctgatcct tggtatagcg ggaattttga tgaaacttat aaaattttat ccctagcttg
    22561 taaaaattta cttgtttttt tatcaaaata atttaaaaca actatatatt acttctcgtt
    22621 tacttttcag gcttatactt ctaaatgaac cgaaaaacat tcataagaaa aactccttaa
    22681 aattacacgc ctagcttaaa tccctttagc taggctattc tttagatgtt tttatccttc
    22741 ggatttaaaa tttttactat tttaagtgct tcttaagaaa aaactccaaa tttatgtgct
    22801 acaattacga tgttttatta atttttgaca aggagaattc tcatgaaact agttaaactt
    22861 agtttagttg cagctcttgc tgcaagtgct ttttcagcag ctaacgctac tccacttgaa
    22921 gaagcgatca aagatgttga tgtatcaggt gtattaagat acagatacga tacaggtaat
    22981 tttgataaaa atttcgttag caactcaaat ttaaacaaca gcaaacaaga tcacaaatat
    23041 agagcacaag ttaacttcag tgctgctata gctgataact tcaaagcttt tgttcaattt
    23101 gactataatg ctgctgatgg tggttatggt gctaatggaa taaaaaatga tcaaaaagga
    23161 ctttttgttc gtcaattata cttaacttat acaaatgaag atgttgctac aagtgtaatc
    23221 gctggtaaac aacaattaaa ccttatctgg acggataacg ctattgatgg tttagtagga
    23281 acaggtatca aagtagtaaa caacagcatc gatggtttaa ctctagctgc ttttgctgta
    23341 gatagcttta tggcgaaaga gcaaggtgca gatttattag gacaaagtac tatatctaca
    23401 acacagaaaa cagctccttt taaagtggat tcattaggaa atctttatgg tgctgctgct
    23461 gtaggttctt atgatcttgc tggcggacaa tttaatccac aattatggtt agcttactgg
    23521 gatcaagtag cattcttcta tgctgtagat gcagcttata gtacaactat ctttgatgga
    23581 atcaactgga cacttgaagg tgcttactta ggaaatagcc ttgatagcga acttgatgat
    23641 aaaacacacg ctaatggcaa tttatttgct ttaaaaggta gcattgaagt aaatggttgg
    23701 gatgctagcc ttggtggttt atactacggt gataaagaaa aagcttctac agttgtaatc
    23761 gaagatcaag gtaatcttgg ttctttactt gcaggtgagg aaattttcta tactactggt
    23821 tcaagactaa atggtgatac tggtagaaat atcttcggtt atgtaactgg tggatatact
    23881 ttcaacgaaa cagttcgcgt tggtgctgac ttcgtatatg gtggaacaaa aacagaagct
    23941 gctaatcatt taggtggtgg taaaaaactt gaagctgttg caagagtaga ttacaaatac
    24001 tctccaaaac ttaacttctc agcattctat tcttatgtga acctagatca aggtgtaaac
    24061 actaatgaaa gtgctgatca tagcactgta agacttcaag ctctttacaa attctaagaa
    24121 gctttcaagt ctaacttcaa ggcggagttt tgctccgcct ttttttatgc ctgattttta
    24181 aaacttaaat ttatataaaa aattttccca agctaaaacg ctttaggaaa attaagactt
    24241 aaaccaatta gtgatttttt caaaaagccc tttttgctct tgatgcatac catctttgat
    24301 gccaaaactt tcacttagtt tttctaaaag ttctttttgt tcatcgttta aagaagttgg
    24361 gaatttgata gaaatttgaa cgatttgatt tcccatgcga gaactatgaa catcttttac
    24421 cccttctttt tcaagaacaa atctttgtcc atctttagca ccctttggta aatttaaggt
    24481 cgcttcaccg cgtatggtgg gtacttttat actctctcct aagatagcct gggtaaaaaa
    24541 cactggaaat tctatatata tatcatcatc atctctgata aaagtatcat cttcagcggc
    24601 gatgatctta acatacatat cccctctagt accatttttt aagatattac ctttagcatt
    24661 gacacgaagc ttcatacctg tatctacacc ttctgggata ttaagctcga cactatcttt
    24721 gctttcatta taacccaaac ctttacaatc actacatttt tcactagctt tttctccaat
    24781 tccttgacaa tcagggcaag tttgtgcaaa agtgataaaa ccttgagaaa ccccaacctg
    24841 tcctctacct tgacactttg gacaagtttg aagctttcca tctttagccc ctgttccatt
    24901 acaagtttta caagagcatt tataagtaaa gtctatattt ttcttacaac caaaaaccgc
    24961 ttctttaaaa cttaatttta aattaacgat aaaatctgaa gggattttct catcatttga
    25021 actttttcta cgacgtgatg agccaaagcc ttctccaaaa aaactagaaa atatatctcc
    25081 taaatcctca aaaccaccaa aacctgagct actagaacca aatccaccgc cttttaaagc
    25141 atcttttccg tatctatcat aaatagctcg cttttcatca ttgcttaaaa cttcataggc
    25201 ttcattaaca agcttgaatt tatcttctgc ttctttatca ccttggtttc tatcaggatg
    25261 atattttaaa gccatttttc tataggcttt ttttatggtt tctttatcag cattttgcgt
    25321 gatttcaaga atttcataat aacttatttc cacatt
//
LOCUS       DAPIWU010000011        24925 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.011, whole genome shotgun sequence.
ACCESSION   DAPIWU010000011 DAPIWU010000000
VERSION     DAPIWU010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24925
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.011"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            92..454
                     /locus_tag="RJ285_000360"
     CDS             92..454
                     /locus_tag="RJ285_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDV7383176.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            458..1897
                     /gene="dcuC"
                     /locus_tag="RJ285_000361"
                     /pseudo
     CDS             458..1897
                     /gene="dcuC"
                     /locus_tag="RJ285_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            1910..3072
                     /locus_tag="RJ285_000362"
                     /pseudo
     CDS             1910..3072
                     /locus_tag="RJ285_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            3082..4449
                     /locus_tag="RJ285_000363"
     CDS             3082..4449
                     /locus_tag="RJ285_000363"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7383177.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            4458..5798
                     /locus_tag="RJ285_000364"
                     /pseudo
     CDS             4458..5798
                     /locus_tag="RJ285_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
     gene            5880..6104
                     /locus_tag="RJ285_000365"
     CDS             5880..6104
                     /locus_tag="RJ285_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HDV7383178.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            6101..7942
                     /gene="feoB"
                     /locus_tag="RJ285_000366"
     CDS             6101..7942
                     /gene="feoB"
                     /locus_tag="RJ285_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HDV7383179.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFQPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(7939..9432)
                     /locus_tag="RJ285_000367"
     CDS             complement(7939..9432)
                     /locus_tag="RJ285_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDV7383180.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILAKHLS
                     LGNEIPVLAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILDKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANISSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS"
     gene            complement(9436..10260)
                     /gene="fabI"
                     /locus_tag="RJ285_000368"
     CDS             complement(9436..10260)
                     /gene="fabI"
                     /locus_tag="RJ285_000368"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HDV7383181.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(10264..10935)
                     /locus_tag="RJ285_000369"
     CDS             complement(10264..10935)
                     /locus_tag="RJ285_000369"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDV7383182.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(10932..12134)
                     /locus_tag="RJ285_000370"
     CDS             complement(10932..12134)
                     /locus_tag="RJ285_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDV7383183.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(12137..13135)
                     /gene="gap"
                     /locus_tag="RJ285_000371"
     CDS             complement(12137..13135)
                     /gene="gap"
                     /locus_tag="RJ285_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDV7383184.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGVQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            13195..13740
                     /gene="nadD"
                     /locus_tag="RJ285_000372"
     CDS             13195..13740
                     /gene="nadD"
                     /locus_tag="RJ285_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HDV7383185.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALGKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            13768..14094
                     /gene="rsfS"
                     /locus_tag="RJ285_000373"
     CDS             13768..14094
                     /gene="rsfS"
                     /locus_tag="RJ285_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDV7383186.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(14126..14503)
                     /locus_tag="RJ285_000374"
     CDS             complement(14126..14503)
                     /locus_tag="RJ285_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HDV7383187.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(14550..15938)
                     /gene="pgmL"
                     /locus_tag="RJ285_000375"
     CDS             complement(14550..15938)
                     /gene="pgmL"
                     /locus_tag="RJ285_000375"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HDV7383188.1"
                     /translation="MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNR
                     GCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANV
                     MITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLY
                     VKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAP
                     DPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPN
                     PRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRY
                     FGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKE
                     IEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVF
                     TLFNDIKARFKN"
     gene            16041..16577
                     /gene="fliL"
                     /locus_tag="RJ285_000376"
     CDS             16041..16577
                     /gene="fliL"
                     /locus_tag="RJ285_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HDV7383189.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            16577..16924
                     /locus_tag="RJ285_000377"
     CDS             16577..16924
                     /locus_tag="RJ285_000377"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HDV7383190.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAVV"
     gene            complement(16925..17344)
                     /locus_tag="RJ285_000378"
     CDS             complement(16925..17344)
                     /locus_tag="RJ285_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383191.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(17341..18702)
                     /locus_tag="RJ285_000379"
     CDS             complement(17341..18702)
                     /locus_tag="RJ285_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HDV7383192.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            complement(18699..19820)
                     /locus_tag="RJ285_000380"
     CDS             complement(18699..19820)
                     /locus_tag="RJ285_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HDV7383193.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHTFNIKADLSKIE
                     KNEQFPFFKISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(19892..21076)
                     /gene="kpsS"
                     /locus_tag="RJ285_000381"
     CDS             complement(19892..21076)
                     /gene="kpsS"
                     /locus_tag="RJ285_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HDV7383194.1"
                     /translation="MRFNTKIKKEFSGKNVLLLQGPVGNFFHHLAIRMEKKQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            complement(21073..23100)
                     /locus_tag="RJ285_000382"
     CDS             complement(21073..23100)
                     /locus_tag="RJ285_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDV7383195.1"
                     /translation="MLNGYYFYVNNFIQIFYKKKFYGWGRKRTGRYAFLFHKKFGGSL
                     ILFEDGFIRSLNLGVENSPSFSIVKDDIGIYYDATMPSKLENLLNTYEFKDEEIKQAK
                     KAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKDFKTVDMI
                     KDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLSKECILITENFNPIALLEFFDKVY
                     TKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYA
                     EYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKRKFVKPFFIAKNNEI
                     IFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDEDLLHFTPKISLVEDG
                     FIRSISLGSDLTRPFSLIIDDKGLYIDPNKASKLEELLQNEIFDENILNRAKNIIKIL
                     LENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSK
                     NQDAYIIFKPHPDVLSGNRVGLKDETRILEFCDEIVKDCSIDSAIKIADEIHTITSTS
                     GFDALLRAKKVFTYGMPFYAGWGLTKDKHKCKRRTRKLSLEELVAGALITYPRYINPK
                     TKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK"
     gene            complement(23094..24104)
                     /locus_tag="RJ285_000383"
     CDS             complement(23094..24104)
                     /locus_tag="RJ285_000383"
                     /inference="COORDINATES: protein motif:HMM:NF024914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7383196.1"
                     /translation="MNNVLKIALIADELTYASLKEEDGVVLRNVTPINYKVLFYFWKP
                     DFLFVESAWHGCKNKWKYQIASYPDYPKRNNKKLQKCVDFAKTLNIPTVFWNKEDHVH
                     FDRFIESAKLFDFIFTVDENCISKYKSYVGENSFVGVLPFAVQSKFHNFTGFNFTLNK
                     ANFVGSYSRHIHEKRRFYQDMMFKLSSEINNLDVFDRNSNRKSTNYRYPIFKGMQIYP
                     SVEYKKTAQIYKKYLISLNVNTIENSPTMFSRRLIEIIACGGIAITNHTSAVEKYFKD
                     YCYSFQTEKELRNMLYKFQKNGLSEDDKIKLKNGAEFIAKNHTWKQRLEQIVDTIGIK
                     KC"
     gene            complement(24139..24900)
                     /locus_tag="RJ285_000384"
     CDS             complement(24139..24900)
                     /locus_tag="RJ285_000384"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383197.1"
                     /translation="MDLIGIEFCKALNIKNNNYNFVELYDKYFTSKCLFLKFKPPKKI
                     MQSYLDYFEKSNEWVRKEFFPFKERLFQKQDLSNYKENYKLKEMKSEYWDKIAEFILD
                     VVKTKDKIIEGKDIIIQSKIMQFNQIQTKLFFQVKYGTAKSRIQNQLSYKLGQTMIVN
                     SKSFLGYLIMPIALLSTVVSYRQYQKIYQEKIKKDFSLKLPSLKQYPDYQEAIKLKNH
                     ISYKLGEALIKAHKNWYGGGGYIKFLFEIYKLRKK"
BASE COUNT         8532 a         4262 c         3487 g         8644 t
ORIGIN      
        1 attttattat tatgataata aactattgac aaattattat tgtagtgata aaatgcattc
       61 tgcttaatct atatttaaca aaggagaatt catgtcaaac tatccaaagg ccattggtcc
      121 atactcagct tacagagaag taaatggact tttatttata tcaggacaac ttcctatcaa
      181 ccctgcttca ggagaaatag aaagctctga tatcaaagaa caaaccaaac aatctttaaa
      241 aaatatcggt gctatcttag aagaaaatgg tatcagttat gataaagtga ttaaaaccac
      301 ttgcttttta gctgatatta atgattttgt agcattcaat gaaatttatg ctgaattttt
      361 taaagctcct tatccagcaa gaagtgcttt tgcggtaaaa gatctaccaa aaaaagctaa
      421 agtagagata gagatcatcg ctcaaaaagg ataaaacatg ctaggtattg ttttttcttt
      481 atttagtgtt tttttgcttg tttttatgct ttataaaaaa atcaatgctc acatggcatt
      541 gcttttaagt ggtttacttt tactttcctt agctgctctt tttggacttt ctccacatat
      601 tgtcgctaaa ggttctttaa atttaggttt ttttgatatt tttcaagttt tcaatcaaac
      661 catgtcaagt acattagtag ggcttggact tacacttatg actatagcag gtttttctgc
      721 ttatatggat catgttgggg cttcttatac actctttaaa gtttttgaaa aacctttaaa
      781 aatggtaaag tccccttata tcttactttt agttgcatat tttatcgtgc aatttttggt
      841 tctttttatc ccttctcacg caggtttggc acttttactt atggttacta tgtatcctat
      901 acttgtactt ctggtgtttc aaaactttct gccttaagtg tgattgcgat ttgtcaatat
      961 atcgatcatg gacctggaag tggaaatgtg atcatggcat caaaagtagc tgaagttgat
     1021 cctgcaattt attttgttca ttatcaactc cctacaacct tgcctatcat tatagctgta
     1081 ggtattgcga tatatctttg caataaattt tttgacaaaa aagataattt tgccttcaat
     1141 gcacaagaaa ttgaaaaaga actaaatgaa aatgaaggta aagaaaaaga acttaaaaag
     1201 cctcctagaa tttatgcgat tttacctata attcctttgg ttttaatcct aggatttagt
     1261 tccgtgcttg atagcatctt ggttttaatg ggaataagta gtgcccaaga agttaaagca
     1321 gctgctagca ctgcaattaa aatgaatgtt ccagtaagca atggtgattt caacttttgt
     1381 ggctattatt tttgaaatga tacgctataa aagcgttgta gaaactctta attctattat
     1441 gattttcttt aaaggaatgg gacatttatt tgttatcaca gtttcactca tcgtttgcgg
     1501 tcaagtattt gcaagtggtc ttttatctgt aggttttgta gatactttaa tagaattttg
     1561 caaaaatgca ggatttggag ttttggctat tattatcgcc gtttcaatct tgcttgcggt
     1621 ttgtgctttc ttaatgggtt caggaaatgc ggcatttttt agctttgctc cacttatccc
     1681 aaatatagca aaacactttg gagttgaaac tatcaccatg atagcaccaa ttcaaatcat
     1741 gacgggcttt ggaagatgtg ttagtcctat tgcaccagcg atcttagcta tctcagctat
     1801 tgcaaaagta agtccttttg ccgtagttaa aagaacagct attcctatgc ttgtagcggc
     1861 tattgtaaat gttattatga cttatattta tctttaaaaa ggagaaaaaa tgaactcaaa
     1921 aactaaactt attcattgtg gcagaggcga tcaaggtgct gaagtaagat cagtcaatcc
     1981 tacacttatg cgtgcatcaa ccatactttt taaagatcac gcaacttgga aaaatacaga
     2041 gaattaagaa aaacagatcg tgttttaagc tatggagcta gaggaacaac aaccaatttt
     2101 gaacttgaaa aacttatttg cactctagag ggtggttata gagcacaact ttttccaaca
     2161 ggacttgcag cattagccat ggtactttta aactatgcaa gcaaagatgc acatttttta
     2221 atcactgatg caatttatgg gcctgtaaga acgatttgcg aattattttt agacaaaata
     2281 ggcgttgaaa ttgatttttt aaaagctgat gcaagtgata tagaagaaaa aatcaaacct
     2341 aataccaagc ttatcctatg cgaaagtcca ggttctatac tttatgaaat catagattta
     2401 ccaaaacttt gcaaaattgc tcatgcatat aatatccctg tagctattga caatacttat
     2461 tctagtggat attttctaaa tcctttagaa cttggagtag acatttcagt tatcgccgct
     2521 acaaaatatc ttagtggaca ctctgatgta accatgggta tagtagtaat caacgaaaaa
     2581 gaatggaaaa attttgacaa acttccagaa gctttaggct ttacaacaag tcctgatgat
     2641 gcttacttag tacttcgtgg tatgagaaca ctagatgtaa gaatgaaagc tcatgaaaaa
     2701 agtgctgatg aaattgtaga gtttttacaa agcagaaaag aaattaaaac aattttctat
     2761 ccaaaactca aatcccaccc aaatcatgaa attttcatgc gtgatcataa aggtgcaaat
     2821 ggtatgatta ccatagaatt tgcagaaggt tataacaaag atgatgctat taaatttgta
     2881 gataaactag aatacttttc aattggtgct agctggggtg gatatgaaag cttagccacc
     2941 gtaactactc cgcctagaac tgcaacagac ctaagtgcaa gagggctatt tgtaagattt
     3001 catataggtc ttgaagatac taaagattta attgctgatt taacacaagc ttttgatagt
     3061 attaaaaaat aaggagataa gatgacagga attagcgtat ttgatcatag attactagca
     3121 gactcatgga gcacgcagga aatgcgtgct attttttgcg aacaaaaccg catacaaaaa
     3181 tggctcgatg ttgaagcagc tttagcaaaa gcacaagcaa aacttaaaat tatccctaaa
     3241 aaagcagctg atgagatcgc aaaaaaagct cattataaat ttatggatat ggactttatc
     3301 tttgctgaat ttaaaaagac caaacaccct ttagttccta ctgtaagagg attagaaaaa
     3361 gcttgcgata ataatttagg cgaatatgta cattttagag taaccactca agatatcatc
     3421 gatacaggac tggttttaca atttaaagaa gcaatgactc ttgtaaaaag cgaattaaaa
     3481 gctatcgcaa aagccttagc gaaactagct aaaacccata aaaacactgc tatgatggga
     3541 agaactcttg ctttacaagc tttaccgatc acctttgggc ataaggtagc catctggctt
     3601 agcgagcttg atcgtcattt tgaaagaata cttgaacttg aaaaaagact ttatgtaggc
     3661 agcatagtag gagctgttgg aaccaaggcg agtttaagcg atgaatgcaa cgaagtagaa
     3721 aagctaactt tagagaattt aggacttgaa gtgcctaata tctcttggca gagcacacgt
     3781 gatcgcttta tagagcttgg ttttgtacta ggcaatatca atgcaacttt taacaaaatc
     3841 gctcatcaat tactcatact ctcacacaat gaaatcgatg aagtagcaga accttttggc
     3901 aaaggacaag taggatctag cactatgcca cacaaaagaa atcctgcagt aagcgaaaat
     3961 gcagttacag taagcaatgc ctttaaggca aatttagcca ttttaagcga tattgaaaga
     4021 cacgagcatg aaagagatgg gcaagtttgg aaaatggaat ggaaactttt acctgaaatg
     4081 tttttaatgc tttctgtggt tttagcaaat atgaaatttg ctcttagtga cctagaagtt
     4141 aaaaaagata aaatgcttaa aaatcttgac actcttaaag gctttgtact ggcagaacgc
     4201 gttatgtttg cactaagcga tcattacggc aaacaacacg ctcatgaaat cgtttatgaa
     4261 aacgctatgc taggtatcga acaacaaaaa actttcaaag aagtattgct tgcagataca
     4321 agagtatctc aagtcttaaa agaaaaagat atcgatgctt tacttgatgc aacaagttat
     4381 gtaggatatg caccaaaact tgtagatgaa tttttggcaa aaatcaaaaa tagcgctatc
     4441 ttaaaatagg aaaaatcatg ttctatagcg aaattttggc ggattttatt ttcaatcttc
     4501 agtatgaaaa tatccctaat acagttgttc aaagagctaa agagcttatg cttgatagcc
     4561 ttggaacggc tatagcagcg agtaaggaag aatgcgtttt aaatgccttt aaagcttttg
     4621 aaaatttaag cacagaaaaa aatacccctg tatgggtaca tgataaaaaa ttagatccca
     4681 tttatgcagc catgctaaat ggcattgctt ctcatgcact tgattttgat gatacgcata
     4741 cagaagctat tttgcacgca agtgcgattt taactcctct ttgtttaagt tatggttttc
     4801 atgttagcaa agatgcgaaa aaaatcatca aagcttttat aataggctgg gaaattgcag
     4861 ctagagtagg cattgcaagc aaaggcactt ttcataagcg tggttttcat accactgcta
     4921 ttgcaggaat ttttggaagt gtgagtgcaa gtgcaatctt gctggatctt aacaaagaac
     4981 aaatcatcaa tgctttagga cttgctggaa gttttgcaag tgggattaat gagttcttat
     5041 ccaatggctc taattcaaaa gtcttacata tagcaaatgc cattaaaaat ggaattttaa
     5101 tcgctaactt tgctaaaaat aacatgagtg aacctctaag catttttaaa ggtagggata
     5161 atatctttaa atgttttggt atagaacaag aatgcgataa aacagaactt gataaaggct
     5221 tgggtgaaat ttagcaaagt atgcaagttt ctataaagcc ttatccaagc tgccattttg
     5281 ctcatggtct tattgattgt gccatagctt taaaaaatga tggcttaaaa gcagatgaaa
     5341 tcaaaagcat tcgttgtttt gtagatgaag ttcctatttc ttttatttgc gatcctttag
     5401 aagcaaaata cactccaaac agtgcttatg aggccaaatt ttccatgcct tttttaatgg
     5461 ctctaggatt ctttgatggt aaaatcactc ttgaatctta tgaaaattta aagcgtgaag
     5521 aagtactaga atttgctaaa aaaatcagtt acaaaaaaag gaaatctcaa ggctttccaa
     5581 aatattttcc agggcattta gaagccagtt tgcaagatgg acgcataatc caaaaagatg
     5641 tttttatcaa taaaggtaat tttgataatc cactaagttt tgaagaatta aaagctaaat
     5701 ttttagccaa tgcacaaatt taccttgata atactaaagc taacaaaatt ctagatcaaa
     5761 tcatcaatct agaaaattta aaccactttt ctttttaaat atttatcctt ctttttacaa
     5821 gaaggataat ttcattacac ttttttatta taatatttat tattaattta ggaattacaa
     5881 tgactttaaa cgagttaaaa gatggacaaa aggctattat tgtcaattta aacgctcaca
     5941 aagaactcaa aaatagactt ttaagctttg gatttattaa aaataaaaac ttgaaaaaaa
     6001 ttcactcctc tttaaaaaat gccaccataa tggtagaact tgatacaagt tgtgttatcc
     6061 taagatctga tgaagctaaa accatagaag tgaatcttat atgaaaaaaa tcaaaatagc
     6121 tcttgtaggt cagcctaatg taggcaaaag tcttcttatt aatgcacttt gcaaagccaa
     6181 tatgaaagta ggaaatttta gcggagttac tatagaaaaa gcaagcgcaa aaacttttta
     6241 taaaaactat gaatttgaag tcattgattt gccaggaact tattctttag atggatatag
     6301 cgaagaagaa aaaatcacac gtcatttttt aaatcaaaat gactatgatg ttattgttaa
     6361 tgttttagat gctaccaatt tagaacgcaa tcttatcctt agtgcagaac ttttaagcct
     6421 taataaaaaa atgcttttag ctttaaatat gtgcgatgaa gccaaaaaag aaggtataga
     6481 gcttgacact tctattttaa gccaagaatt tcaaagtcaa gttgttgaaa tttcagcaaa
     6541 aacaaaagaa aatttagaac ttttgctgca aaaaattatt attttatttg aaagtaaatt
     6601 tattccaaga tctcaatttt acactccgct ttgcgaaaaa agtccggaaa aagaagattt
     6661 attatatttt attaatgaac tttcaaaaaa aattattaca cacaaaaaag aagaaagaaa
     6721 tttaaccaaa aaaatcgatg ccttacttat ccataaattc tttggcttac ctatattttt
     6781 atttttaatg tggcttttat ttcaactcac ctttagctta gggcaaattc ctatggatta
     6841 tatagaatcg ggctttaata ccttaggtga atttgttaaa aacaatattt ctaatacctt
     6901 tatcgcttca gctttggctg atgggattat cgcaggtgtt ggtgctgtga tacttttttt
     6961 gcctaatata atgattttat ttttaggcat agctctttta gaaaccacag gctatatgtc
     7021 aagagtagct tttttacttg atgggatttt acataaattt ggtttgcatg gtaaaagttt
     7081 tattccgcta atcactggtt ttggttgttc ggtacctgct tttatggcta cacgcactct
     7141 taagaacaaa agagataggc ttttaactct ttttgtgatc aattttatga gttgtggagc
     7201 aagacttcct gtatatgtgc tttttatcgg tgcttttttt ccaagtgaaa aagcaggaaa
     7261 ttatcttttt ggaatttata ttttaggtgc gattttagga ctttgtgctg caaaattttt
     7321 aagaatgaca gcatttcgtg gacttgatga accttttgtt atggaaatgc caaaatatcg
     7381 tatgccaaat tggcatttag tttggtttat ggtttataat aaagccaaaa tgtatcttaa
     7441 aaaagcagga actttcatac ttttggcctc tttgctcata tggtttgcta gcaattttcc
     7501 aaaaagtgaa gaaaatttaa atgattttaa tgctcaagaa agagctatag aacaaagtta
     7561 tttaggacaa tttggcaaag gcatagaacc tatttttcaa ccccttgagt tagattggaa
     7621 attaagcgta tctttaatca gtggtttggc tgctaaagaa gtgatgatct caactatggg
     7681 cgtgctttat tcactaggaa aagatgtaga tgaaacaaat aatgatttaa aaggaattat
     7741 cgctaaaaac atacctatac caagtgcagt ggcttttatt ttatttgtaa tgatttataa
     7801 tccttgcttt gcagcaacta tagttttttc aaaagaaagt ggaaagctaa aatacactct
     7861 ctttctattt ctttttacct gtacaagtgc ttatatagta gcttttatag gacttcatat
     7921 tgctaaaatt ttattaaatt aacttgcttt taatgatgaa attttagcga tattatcttc
     7981 aaaagctttt aaaatgctat aagcaacacc ttcaaaatca agtccaccgc aaagatagat
     8041 taaagtcata cgaaaagatt tactcacatc aagctttggt ttttcagcgt tcatatttaa
     8101 cttaaaatca taaggacttg catgtttaaa agcataattt tttgccgcaa ttaaaaaatc
     8161 attcttatct tttaaaaatg cgcctttaac caaaataaaa ctcatctcaa gatatttcca
     8221 aaaatctttt gaaggcatag gattttcatc aaaattttgt tctataaaag catagttttt
     8281 ctcaaaggat tttttataat tttctacaag cgaagcacct aatttatttt tagctatatt
     8341 ttgtaaaata agttttatat tgctttcaaa ttcaaaatct atttgttcta aaattttaat
     8401 ttgctcttct agaaaaaatt cttgttttaa ctcttcattg caaagtttag cgtaagaaga
     8461 aatatttgcc ataggttttt cataattccc aaactcatcc caaaaatttt tctcactaca
     8521 ggctatacaa ccatgtcctg cagccactgg ccaagaagtt ttagcattaa atttcacttt
     8581 aggacagttg ttgtaagtat aaggtccttt acaacctatc ttaaataaac aagctccatt
     8641 ctttgcagct tcatcgtcaa aatgttcagc aaaaatccca ctttcaaatt tcgcctttct
     8701 ttcacacata tcatgcaaac atttaccata agcccacaca ggacgatttt gctcatcaag
     8761 ttcaggcaaa actccaaata aagcaaaaaa acttaaagtc gcaatgatat ttatatcact
     8821 tggaggacaa cctgggatat ttactacttt ctgacttaaa acttcgctaa taccacaagt
     8881 tttactagga tttggataag cagcttgaat accaccataa cttgaacaag tacccactgc
     8941 aaagatagcc ttggctttag cggctagttt gtctaaaatt tcatagccac tctctccttg
     9001 cgctcctata gtaagaaaaa aggtatcaat ggctgcaaca ccaccttcaa ccgctaaaat
     9061 aaaatcttct tctaaaacat gttctaaaag ctcttcagcc ttagtgccat ttgctgccat
     9121 taaagtttca tgatattcta aagaaaaaaa atcaaaaata agctcatcaa aacttggcaa
     9181 ctcagaacgc aacaaactct cactacaccc tgtacattca caaagatgaa gccatactaa
     9241 ctttgtttta ggtgcgattt gaaaaaatct ttgtgcaaga actggaattt cattacctaa
     9301 agataagtgc ttagcaagaa tttttacact ttcttcattg ataaccttat cctcttttaa
     9361 agtagaattt tcaagttttt taatgcgatc ttcaagtata ttttttaatt cttcattgct
     9421 aagctttgcc atcttttatc ctttttgatt atcccaacaa agaacagttt gcccttcttc
     9481 atttttttca acatcaccca tacccatgat gttatatcct gcatcaacat aatgtatttc
     9541 acctgtaaca ccatttgcca aatcgctaag taaatacata gccgaatttc ctacatcttc
     9601 tatactaaca ttgcgtttta aaggagaatt gatttcattg tattttaaaa tcattctaaa
     9661 atcccctatt ccacttgctg ctaaagtttt aataggacct gctgaaatag cattaacgcg
     9721 gattcctttt actcctaaat ctcttgctaa ataacgcaca gaactttcaa gtgcagcttt
     9781 tgctacaccc ataacattat aatgaggtac atatttaacc ccaccaagat aacttaaagt
     9841 caaaatcgaa cccttatctt ttaaaatagg taaaaccgca cgtgttaaag aaagtaaaga
     9901 atacacagaa gtttgcatag ctatatcaaa agcttctttt gaagtttcta aaaaagaatt
     9961 ttctaaagct tcttttggag caaaagcaac cgcatgcact acaaaatcaa tctcgcctaa
    10021 atcttttttg attttttcag cgatagaatc taaatgctcg ttattattta catcaagctc
    10081 ataaacaaaa ttagaattaa actcttgtgc tataggttct acgcgttttt ttaaagcatc
    10141 atttaaaaaa gtaaaagcaa gctcggctcc ttgatcaaaa catgcttttg ctatgccata
    10201 agcgatagat ttattattcg caacccctac aataaggcct tttttaccct tcataatcat
    10261 cttttatcct ttgattaatt ttataaaatt ttctactttt aaagctgcag agcctatcaa
    10321 aactccacca caatgattta cacttaaaat ttctttgata ttattttcat tcacacttcc
    10381 accataaagc aaaggtacct tggttaaact cgctaaaaat tcaagcactt tagcgatatc
    10441 tgtactttgt gcgctcactc ccgttcctat agaataaata ggctcataag cgatgatgag
    10501 tttttcataa tttaaatcaa taatttcaag ttgttttttt aaaaactcta aagtcttgcc
    10561 tgaatttttt gtatctaaat tttcacctat acaaaaaaca attttataac catgctcttt
    10621 agcaaaatca aatttagcct taataaattc ttcatctcct aaagctcttc tttcagaatg
    10681 cccgattaaa acacatttga tcccaaattc gtccaaatgc tcttttccaa gctcgcctgt
    10741 aaaagcacca ttaacacaag gataaaaatt ttgcgctcct tgtatgaagt tattttcatt
    10801 ttctaaaaat gctacactag gtgggaaaac gataatatca tcacattttg ctcccatagt
    10861 tttatttaaa atttcagcat aaattttaaa acttgctctt gtgtgattgc attttaaatt
    10921 tgcagcaaag atcattcatt ttccttagat cttaaagctt ttacgcctgg aagttcttta
    10981 ccttctataa gttcaagaga agcaccacct ccagtggaaa taaaagtcat ttcatctgca
    11041 tcacctgcgc gcgcaaccac atcagccgta tcaccgcctc caacaacaga agttgcatgt
    11101 ccttcgctga tataatgact cattttaatg ctaccttttg aaaatttatc aatttcaaaa
    11161 acacccatag gtccattcca ccaaatcgtt tgcgcatcag aaatcacctc tttaaaaagt
    11221 ctcacactcg caggtcctat atctaaaccc atccaaccat ttggaatttc ttgcgctgga
    11281 acaaatttca tcggcgcatc ttgtgagcac gcaggagcgg ctacaacgtc tactggaaga
    11341 taaattttca ctcctaaatt tttacccttg gtaagaattt tattagcttc ttctaaaagt
    11401 tcttcttcta aaagtgaatt tcctatatca taacctaaag cttttaaaaa agtaaatgcc
    11461 atacctccgc ctatgattaa tttatctacc tttggtaata aatttgtcaa tgcttgaagt
    11521 tttccactta cctttgaacc tccaacaaca gcgacaaaag gacgtgctgg atgtttgata
    11581 agattgcttg caaaatcaat ttctttttgg agtaaaaatc ctgcgccttt gtgtttttca
    11641 tcaaaaaatt tagtaatcgc ctctacacta gaatgtgctc tatggcatac tccaaaagca
    11701 tcattgatat aaacttgaac catagaagca agttctttgg ctaaattttc atcattttta
    11761 gtttcgcctt tttcaaaacg caaattttca agaagtaaaa tttcacccgc ttttaaattc
    11821 atagctttag tttttgcatc ttcgccgata acatcttttg ccataataat ttctttatct
    11881 aaaagtctag caagacgctt agcaacaggt tctaaagaat acttggaact aatttctttt
    11941 ggacgcccta aatgagaggc taaaatcaca ctacaaccat tatccaaaca atatcttatc
    12001 gtaggaatag ctgatcttat gcgtctatca tcagtgatat ttaaaaaatc atcttgagga
    12061 acattaaaat cacatcttat aaaaactttt ttcttagcta aatcaatgtc ttttatagaa
    12121 ataatatcac tcatgattaa gccttatttg caatatatac tgccatatct actagacgac
    12181 ttgaatagcc ccattcatta tcataccaag caatcacctt gataaaatca tccgcaatca
    12241 cttgagttaa atcacttgcc acaattgctc cataagaaca agtgataaaa tcgcttgaaa
    12301 ctctttcatc atcatctacc attaaaatgc cttttaaatt tgtagttgca gcttttctaa
    12361 aagcttcatt gatttcatct ttgctaactt tacggcttag ttgtgcggtt aaatccacgc
    12421 ttgatacatc aatcactggc acacgcatac tttgtccgtg aagcttgcca ttaagctcag
    12481 gcataacaag cttcatagct tttgctgcgc ctgtagaagt tggaatgata ttttgtgctg
    12541 cagcacgaga acggcgttta tctttagctt tagcatcaat aatactttgt ccatttgtat
    12601 aagcatgtat tgttgtcata agtccttttt cgataccaaa attatcttgt aaaacacgac
    12661 aaacaggacc taaacaattt gttgtacaac ttgcattaga aataatgctt tcacccttgt
    12721 aaagttctga atttactcct aaaacataag taggagtatc atcttttgca ggagcactca
    12781 tgatcacttt ttgcactccc atatctataa attcttgaca ttttgccata gttaaatgcg
    12841 ctcctgtgca ctctaaaaca atttgtacac cgtgttttgc aaagtcaaga tcttttacat
    12901 tgcgactttt aaatactttg atttttttac catttaccac taaatcatcg ccttcactat
    12961 caacactgcc tttaaattca ccatgtactg tatcgtattt aaaaaggtat tttgtaagtt
    13021 caatatccgt agtatcattt atcgccacaa gctcaatatc atttctttct aagatgattc
    13081 ttgctacaca tctgcctatg cgtccaaaac catttatagc aacttttaca gccatttaat
    13141 ttccttttgc aaaatataat gctaatattc tacaaaaaaa aggttaaaat tttaatgaag
    13201 atagcacttt ttggtggcag ttttgatcca ccgcataatg gtcataatag cgttgtttta
    13261 gaggctttgg gaaaattaga tattgataaa cttattatta tgcctactta tatcaatcct
    13321 tttaaacaaa gttttagtgc tgatgaaaag caaagattct tatgggttaa aaaactttgg
    13381 ggacatttgc caaaagttga aatttgcgat tttgaaatca ggcaaaaacg ccctgttcct
    13441 agcatagaaa gtgttaagta tctttataag ctttataatc ctagtaaatt ttatctttta
    13501 attggcgcag atcatttaga aaaacttcat ctttggcatg attttgaaaa actcaattct
    13561 ttagtagaat ttgttattgc taatcgcaat gatataggaa ttcctaagaa tttcaaagat
    13621 ttaaaaacca ataaaaaaat cgcttcttct ttcatacgcg acactttaaa tacaaatgag
    13681 gtttgtgaag aaattaaaga tgaagtaaaa aaatattatg aaaaattaca aaaaaattga
    13741 tacaatttca aaaattaaag gacaataatg caagaaagaa tagatttaat cgttaaaatt
    13801 ttagatgaaa aaaaagctga aaatatcaaa accattgaca tgagcgagca agaatacttt
    13861 gtaaaatatg tcattattgc agctacttta ggagaaagac acgctctatc tttgatcgat
    13921 gagcttaaaa cacgacttaa agccaaaggt gaggaatttt taaacataga tagtagtgaa
    13981 gaatggagcg tgattgatct tggtgatatt ttaatccatc ttttaacacc agaacacaga
    14041 ggaatttata atatagaaga attattagaa aatcttaaaa aaggtagggt ttaaaaaggc
    14101 taaaatttat tagtcttttt aatttttaga gattatcgat atattcttta atttcttttt
    14161 tgattttctc tttttgttct tttaaagctt cttttttagc tttatactca gccttactca
    14221 tataatcttt ttgttctttt aaagcatcaa gttctttttc gattttttcc acttcttgtt
    14281 ctttaagttt tttagcttct aactttttat cataaaacat aggatcttta gcacaatcat
    14341 tttgtacttg ttttaaagca agctctaagc ttaaagttct agctgtatca ttatgcgctt
    14401 tagaaaaact gatttcttta ttgatacgat cgatttttct atcacattca cttgcaccaa
    14461 aagcaaaagc acatagtgta agtaaaataa gtattttttt catttttaat tcctttttaa
    14521 aataaattaa atcgcggaat attatctcat caattcttaa atctagcttt tatatcatta
    14581 aacaaagtaa ataccatact ttcaagctct tttgctcttt ctaaagatgt tgcctcaaag
    14641 cgtgtgataa gataagggct ggtattagat gcacgaagta aagcccatcc atcgccaaaa
    14701 tctatcctag ctccatcaat ttcacaaaga cttttaacac cttttaaagc tcctttttca
    14761 atctcttttt gaaattcttc cacaagtttg aatttttctt cttcatttac aggaatttta
    14821 atttcaggtg tagtataaag ttttggtaaa gctttaatca tactttctag atcaaaacct
    14881 ttataaacaa gctccaaggc tcttaaaaat gcataaattc catcatcata accaaaatat
    14941 ctatgtttaa agaaaatatg cccactcact tcagcagcta aatcaatatc tttttctttc
    15001 atcatttttt tgatattaga atgtcctgtt tttcccataa aaatagttcc aaatttagcc
    15061 acttcatcaa aaagattttt agaacatttt acctcaccta aaatgcgtgg attagggata
    15121 tctttagcaa acaaataaca aagctcatcc ccacaaaata catgagtttt acttaaagca
    15181 accattctat cagcatcccc atcaaaagca aaagccaaag aataatcttg attttgattt
    15241 aaaaattctc taatcgcact taagttttct tcttctgtag gatctggagc atggtttgga
    15301 aactgtccat cgggctctgc aaacattaca tgagctttta aatttaaagc cttgattaaa
    15361 ggctttatca ccactccagc cgcaccattt gtgcaatcaa caccaaattt ataattaaaa
    15421 tcctttaaaa agctaaattg ctcgcacata aatttcacat aaaggtttaa aatatcgtat
    15481 ttttctactt ctaaattttc ttcaatatca tcatctaaat gcttataaac ttcttttgaa
    15541 aactctttta attctacacc aaaaaaactt tctttattaa tagtaatttt aaaaccatta
    15601 taatcttttg ggttatgaga gcctgttatc ataacatttg catcaaattt taagccctca
    15661 taaagactaa aatatcccaa tggagttggt acaagcccta tatcatagat ttttattccc
    15721 gctttgttaa gtccactcac tagataatta aaaagttcat ttgcactata tcttgcatca
    15781 tagcccacgc ttacattttt acaaccccta tttaacatag tttgtcccaa acaaaaacct
    15841 atagctttaa cgcttttttc attcaattct ttgtcgtaaa gtcctcttat atcatattct
    15901 ctaaaaatca catctaacat tttttccttc aaattcatct cttctttgac ctaaatttat
    15961 cgtttttcta aagcaaattt ggatagaaaa gaaatttttg ctacaatttt acattaattt
    16021 cactaaatga aggaaaattt atggatgaag aattagaaaa cgaagaaaca aaaaagaaaa
    16081 aaggtggttc acttgtaatt attattgtta ttttactttt tgttttactt cttagtatta
    16141 tgggagtaat tgcttggctt atttcaagca gttcaagtga tgaaagtgaa gtcaaagaag
    16201 ctccaaaaga agaggcaaaa gccgataaac ctaaagtttc agctcctgct cagcgaggta
    16261 gtgattttgc taatataggt cctatgtatc cacttgatcc ttttacccta aatttgctta
    16321 gcgatagcgg ctcaagatat gtaaaatgca ctatagaact agaacaaaat agcgaacttt
    16381 taaaacctga acttgataaa aaagtcccag tcattcgtga tattattatt cgtacattaa
    16441 cagctaaaac ttttgaagaa gtaagtacac aaaaaggcaa agaacgttta aaagatgagc
    16501 tagttggaaa aatcaatgaa attttaaccg atggctttat taaaaatgtt tattttacgg
    16561 attttgtagt ttcttaatgc gtgtaggctg tgatatcatc gccatttcta gaatagaaaa
    16621 aattcattct agacatggca aaaatttttt ggataaattt ctaagcccaa aagaacaaat
    16681 actcattaaa aatccagcaa ctctagcagg tctttgggct gctaaagaag ccgctagcaa
    16741 ggctttgggt gttggaattt gtgaattatg cagttttttt gatattgaaa tatcaaaaga
    16801 tgaaaaaaac gcgcctaaat taaaatattc tcaaaaaatt acaaaagatt ttaatatcac
    16861 tcaaacttcc ctaagtattt ctcatgataa tggttttgct atagccatag tggctgtagt
    16921 ttgattattt tcctatagtt tgcttgtcta aatttcttga aagtatgaaa tccaccacag
    16981 gttgttctct tttgtttgct cttttacaat gatctttttg aaaaaaatct gtgattttta
    17041 taacaatcct tgcccatttt ttgcgatttc tttcacgcca cgcatgagaa gaaacgctct
    17101 cccaagcata gccattaaac aagcttgcat ttacaaaatg atctaaggct ctaacaccct
    17161 gtcttgctcg tgcggtatta aaaaaaattc ctataatcac gataaaaaga tatcctaaaa
    17221 ctgctaaagg tactattgca caaagcagaa tagtccctgc taatttttct tttaagcttc
    17281 cttttaaagt gcgttttaca cgacgacgaa aattggcgcg aattttagtt ctaactcttt
    17341 tcatagcttt cttttgctaa attttatcct cataccatta gccgaacgca ctgttaaacg
    17401 ccctactaca tcaggtacaa aaccttcttc aagttctagt ttgtaagttt ttaaaatatt
    17461 agccaaaatc aaaatcgctt cttgcatagc aaaaccttgt cctatacaaa ttctttcccc
    17521 taccccaaaa ggcaaataag catctttttt gtactctcct tcaaaacgag aaggattaaa
    17581 tccatgcgga tttgtccaaa attcttcatg tctgtgtatc agccaaggag caatcaccac
    17641 cccagaacct tttttaataa gcttatctct aacttgagta tctttttttg cctctcttgc
    17701 aaaaaaccca acaggaggat aaagtcttaa agattcttta aaaatatttg ttaagtattt
    17761 aaactgtctt agatgcgaaa tttcaatgac tccaccctgt aaaacctgag taatctcctc
    17821 gtaagctttt tcttgctcct taggataaag actaagcaaa taaagcgtcc atgtcaaaga
    17881 acttgctgtg gtttcatgtc ctgctaaaaa aagcatagcc acttgatcta aaatttcctc
    17941 aaaagaaaaa cgcttatttg tatcagcatc cactactaaa agcaaagatc ctaaaatatc
    18001 ttcaaattct gcattatctg ccatatcata tcttggtttt atgatatcac ttaaaacctg
    18061 tctgatcaca tctccggcct tagcacgctt acaatctcct aacacataag aaagccattt
    18121 tggaaaacga aacatacgac gcatggctgt atgcacgctt tgctcttgaa aagtcacaaa
    18181 tgcgtttaag atttttttac ctttttcctc atcgagtttt gaagacataa tggtgcgaaa
    18241 aatcacatca gcggtaataa aagtcatagc ttcatctact tcgataacag catgatttgg
    18301 atacttgcta aaacgatcca tcatatctgc cacagcttca ctcataagat taaacacttt
    18361 attgatacga gtcatttcaa aacttggacg caaaagctct ctttgttttt tccaaacttc
    18421 accatttgta gtaaaaatac tctcccctaa aagcggactt aaaagctcat gtaaaaatgc
    18481 acttttagga aattctctaa cctcatcaac catcattctt ttaacttctt tagtatcatt
    18541 tatgacataa agatcaaaat ttggcatctt cacatagcct gtttgcattt tataactacg
    18601 ctcataaagc ccgtcaagcc aagatctacg ctttaacaaa aaagttaaga gcgtagaagc
    18661 tttattttta taaggttttg gaaaaaaggg gcattcactc atatttttac cttttcttct
    18721 aaaaatttag gcattatgat gaaagaaaaa aaatcataat cacctttaac actaatacta
    18781 taaagatata aaaagtgcgc tttgttttta tctcttttta tttttttata ctcatgtttt
    18841 tcatataaag tgtgaaattt agcacttaaa aatggaggtg taaatttagc atttacgcca
    18901 ctcgtgcgga aaaaatccac ttgaggaaaa catgctccat caataatcga tgtgtaatca
    18961 taccatttta aatcaaacct tgaaacaaat tcaagcttct ttctaaattc atccgctttt
    19021 ttttgataac tcactaaagg aatgcattct cctagagtaa gaatttttaa cttatgaagt
    19081 aaagataaat ctaaattttg tcttaaaata cactccaaaa cttctataca aactatagtt
    19141 ccaacactat gtgctactaa aacaagttca taatcttgtt tattttcatt ttgttttagc
    19201 ttatctacta tggtatttgc aaaaagcttg attctttctt gcatagtgcc tgttttttta
    19261 tcttgccaag tagcacaaaa agcacaaatt cttgctatcc aaaatacagc taatttctta
    19321 cctaatttaa ataaaaaatg atttagcaaa aatcctaaaa aacatcctat gatgatagct
    19381 aaagaaaaat gcatataatt ttgcaaaaaa gcaaaacttc caaaagctaa aaccaaagaa
    19441 aatagtaaag aaaataacac ataaaaaaaa ggataataac ctgtgataag ttgataaatc
    19501 gactctttgc caaatttgat aaaaagccct gtgatagtat aaattctaaa aaaactataa
    19561 caatccgcta aggcatcttt gtaattttcc gaccaatttt tcttaacaat atcattccat
    19621 gttaaaaaat gatatttagt ttgcactccc tcgcaagaaa ttttaaaaaa aggaaattgc
    19681 tcattttttt caattttact taaatcagct ttaatattaa aagtatgaga ataatctttt
    19741 aggttttttt taaataaatc ataataaaat ctataacttt taggatcata tcctgctata
    19801 taaaatactt ccctatccat acaatatttc tttttgcttt taattataac aactttgctt
    19861 taaaagctct cttaatcaaa gctttttagt cttatttgtc taaaaagaaa tttttataaa
    19921 aattgccgtt gaattgatta gtttgtaaaa gatatttttt aaaattacat accaaaacag
    19981 gattgggttt ataagcatga gcttcacgcc aaaaaaattg aagttttttt ggataagata
    20041 aaccttcaaa atcataaaaa gcattgccac aaaccttagt cggacagcct tctaaaatag
    20101 cactaaggcc tactgttgaa tttatagtaa tacaacctaa agcctttctt aaaagaactg
    20161 gcaagtgggt atcatgaaca tataaaaccc ttccctctac atgatatttt tgacttaaat
    20221 catttatgag tttagaataa ttcttataac ccctatccat gggatgatgt ttaaaaacta
    20281 gataagattt agctcttgca tgatttgcaa aagaaagtat ggtttcctct ataaagtgct
    20341 ctatgctttt tttgtaatga tatttaattt gcgtatcgct ataaacttgt aaaatcgcca
    20401 aaaagtactt tttttctaaa ttataaatct tttcatttag ttttttttct gtaatcttat
    20461 aaagatactt tctatacaat gatctaaacc aaaataaaaa ttcaaaagga tataaagtgc
    20521 gatgatgaag tttgttgtta aaaaatggag ccaaaataaa agcaaacaac caatacaaaa
    20581 aagcatcaaa agccataaat ttaaatccac ctggaatttc ttttatgctt tctttggtaa
    20641 aaatattttg agaaagataa aaatttttat cacgcggtaa agaagaattt gcattcaccc
    20701 catctttttc caaagtaata caataaggcc ttaaatatcc ttcttcaaaa atccatattt
    20761 caattcctaa ttctttagcc actttaatag ccttagcatg gataatacga caatcattat
    20821 acattaaaat agcatcgatt tttttgcttt gaaaaaaatc tctatagaaa ttttcaagat
    20881 ctttttcatc gcacttacac ctcgttccac taggatagaa aaaaaaatct ccaccgttaa
    20941 aattgagttt aaaaactttg gtttgttttt tttccattct tattgcaaga tgatgaaaaa
    21001 aatttcccac aggcccttgc aagagtaaaa catttttacc gctaaattct tttttaattt
    21061 tagtattaaa tctcatttct ttgctaaaaa ttcataaaat cttcttattt ttctaagcat
    21121 aaaagtttta aaatctattg ccaattttat atattttttt gaaaaataag ctttttgtaa
    21181 atttagcatt atatctaaac aaacttcaat ttcacataaa gtttttgttt taggatttat
    21241 atatcttgga tatgtgatca aagcacctgc tacaagctcc tctaggctta gttttcttgt
    21301 tcttcttttg catttatgtt tatcttttgt taaaccccag cccgcataaa aaggcatacc
    21361 ataagtaaaa acttttttag ctcttaaaag agcatcaaaa ccacttgtag aagtaatagt
    21421 gtgaatttca tcagcaattt ttatagcact atcaatactg caatctttta caatctcatc
    21481 acaaaattcc aagatgcgtg tttcatcttt taaacccaca cggttgccac tcaacacatc
    21541 aggatggggt ttaaagatga tataagcatc ttgattttta gaacgtacct ctttaagcaa
    21601 atcaagagta gataagccaa aacctcctaa aatcatcgaa gcatcatctt caacttgagc
    21661 agggattaaa ataatctttt gtcctatttt ggcattgatc tttaagtctt catgctttaa
    21721 gccattatat tttgaaaagc ggttctcaag taagattttt ataatatttt ttgccctatt
    21781 tagtatattt tcatcaaaaa tttcattttg caaaagctct tctaatttgc ttgctttatt
    21841 tggatctatg taaagtcctt tatcatcaat gattaaagaa aaaggacgcg taagatcaga
    21901 acctaaagag attgagcgaa taaatccatc ttcaactaaa gaaattttgg gagtaaaatg
    21961 gagcaaatcc tcatcttgcg ctttttttat aagagtagtt ttaagagcgt tataatctat
    22021 ccttttaccc caaataaaaa atttatcatt ttcttttaat tgtatattct ttaagcaatc
    22081 taagaaatct agaaatatga tttcattgtt tttagctata aaaaaaggtt ttacaaattt
    22141 ccttttccat tttgaaaatc caaagaaaaa aagtctatta gaatttgcct tttctatatc
    22201 tttatatttt gctaaagttt gaatagtatc aaaaatatta cttttttgat ttaaataagg
    22261 attaaaatac tcagcataaa gtatataagc agcatagaaa acttcttcta aacttctttt
    22321 ttgcatcctt cttttacact ctaatttatc ttttgttaga ccccaacctg cataaaaagg
    22381 cataccataa caaatacact cacattcttg catcaaagct tcaaaaccca tgccagaagt
    22441 tttggtataa accttatcaa aaaactcaag caaggctatg ggattaaaat tttcagtgat
    22501 taaaatacat tctttagata aggaatttat atctaaatca ctttgttttt taccacttaa
    22561 aacatcagga tggattttta tataaatttt agatttagga ttttctttta tggcatcttt
    22621 tatcatatcg acagttttaa aatctttagc aagcccaaat tcaagcgagg catcattggc
    22681 cgtttgagtg atgattaaaa cgcgtttttc atctttttga aaataatcat ctgggatatc
    22741 aagattgtta ttatacttgc taattttata ttttttgata agctctatag cttttttagc
    22801 ttgcttgatt tcttcatctt taaattcata agtatttaaa agattttcaa gctttgaagg
    22861 cattgttgca tcataataaa tgcctatatc atctttaact atagaaaaac ttgggctatt
    22921 ttcaactcct aggtttaatg agcgaataaa tccatcttca aataaaatca aagaaccacc
    22981 gaatttttta tggaataaaa atgcatatct accggtacgc tttctccccc atccataaaa
    23041 ttttttctta taaaatattt gaataaaatt atttacataa aaataataac catttaacat
    23101 tttttaatgc ctatagtatc tacaatttgc tcgagtcttt gtttccaagt atgatttttt
    23161 gcaataaatt ctgctccatt ttttaatttg attttatcat cttcacttaa accatttttt
    23221 tgaaatttgt acagcatatt tcgcaattct ttttctgttt gaaatgaata acaatagtct
    23281 ttaaaatatt tttcaacggc tgaagtatga ttagtaatag ctatacctcc acaagctata
    23341 atctctataa gtcttcttga aaacatagta ggagaatttt caatagtatt aacatttaat
    23401 gaaattaaat attttttata tatctgcgca gtttttttat actctactga aggataaatt
    23461 tgcatacctt taaatattgg atatctatag ttagtagatt ttctatttga atttctatca
    23521 aaaacatcaa gattattaat ttcagaagat aatttaaaca tcatatcttg ataaaatctt
    23581 cttttttcat gtatatgtct tgaataactt ccaacaaaat ttgccttatt taaagtaaaa
    23641 ttaaatccag taaaattatg aaatttagac tgaacagcaa aaggcaaaac acccacaaaa
    23701 gaattttctc ctacataaga cttatacttt gatatacagt tttcatcaac ggtaaaaata
    23761 aaatcaaata attttgcact ttctataaat ctatcaaaat gcacatgatc ttctttattc
    23821 caaaataccg tcggaatatt taatgttttg gcaaaatcta cgcatttttg tagtttttta
    23881 ttatttcttt ttggataatc aggatatgag gcaatttgat acttccattt atttttgcaa
    23941 ccatgccaag ctgattcaac aaacaaaaag tcaggtttcc aaaaataaaa caacacttta
    24001 taattaattg gggttacatt tcttaaaaca accccatctt cttcttttaa agaagcatag
    24061 gttaactcat ctgctattaa agctattttt aatacattat tcacgcataa caccaaaata
    24121 ttttttaata aaattatact atttttttct caacttgtat atttcaaata aaaatttgat
    24181 ataccccccc ccaccatacc aatttttatg agcttttata agagcctctc ctaatttata
    24241 agaaatatga tttttaagct taatagcttc ttgataatca ggatattgtt tcaaagaagg
    24301 taattttagg gaaaaatctt tttttatttt ctcttgataa attttctgat attgtctgta
    24361 tgatactacc gtacttaaca atgctatagg cattattaaa taacctagga aagatttaga
    24421 atttactatc atagtttgcc ctagtttata agataattga ttttgaattc tagatttagc
    24481 agtgccatat ttaacttgaa aaaataattt agtttgaatc tggttgaatt gcattatttt
    24541 agactgtata attatgtctt ttccttctat aattttatct ttagttttta ctacatctaa
    24601 tataaattca gctattttat cccaatactc tgacttcatt tctttaagct tataattttc
    24661 tttataatta cttaaatcct gcttttggaa taatctttct ttaaaaggaa aaaattcttt
    24721 tcttacccat tcgtttgatt tttcaaaata atcaagataa gattgcatta tttttttagg
    24781 aggtttaaat tttagaaaca aacatttaga agtaaaatat ttatcataca attccacgaa
    24841 attataatta ttatttttaa tatttaaagc tttacaaaat tcaataccta ttaaatccaa
    24901 actttcattt tgttttgaag gtata
//
LOCUS       DAPIWU010000012        23961 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.012, whole genome shotgun sequence.
ACCESSION   DAPIWU010000012 DAPIWU010000000
VERSION     DAPIWU010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23961
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.012"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..530)
                     /locus_tag="RJ285_000385"
     CDS             complement(<1..530)
                     /locus_tag="RJ285_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HDV7383198.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNFFIMPSY"
     gene            complement(527..1006)
                     /locus_tag="RJ285_000386"
     CDS             complement(527..1006)
                     /locus_tag="RJ285_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7383199.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIRENFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            1137..1271
                     /gene="rpmH"
                     /locus_tag="RJ285_000387"
     CDS             1137..1271
                     /gene="rpmH"
                     /locus_tag="RJ285_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDV7383200.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            1268..1594
                     /gene="rnpA"
                     /locus_tag="RJ285_000388"
     CDS             1268..1594
                     /gene="rnpA"
                     /locus_tag="RJ285_000388"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDV7383201.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            1591..1932
                     /gene="yidD"
                     /locus_tag="RJ285_000389"
     CDS             1591..1932
                     /gene="yidD"
                     /locus_tag="RJ285_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDV7383202.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAEKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            1929..3515
                     /gene="yidC"
                     /locus_tag="RJ285_000390"
     CDS             1929..3515
                     /gene="yidC"
                     /locus_tag="RJ285_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDV7383203.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVIYDYFFIPKQPLKIEQNIT
                     QKNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DRKYQNEKGEFINLISKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDVNQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKTSGA"
     gene            3519..4337
                     /locus_tag="RJ285_000391"
     CDS             3519..4337
                     /locus_tag="RJ285_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HDV7383204.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            4330..5658
                     /gene="mnmE"
                     /locus_tag="RJ285_000392"
     CDS             4330..5658
                     /gene="mnmE"
                     /locus_tag="RJ285_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDV7383205.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGKLLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYFNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            5669..7855
                     /gene="purL"
                     /locus_tag="RJ285_000393"
     CDS             5669..7855
                     /gene="purL"
                     /locus_tag="RJ285_000393"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HDV7383206.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASAIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGVNLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDNIELSKAELDKLYFESFKEQIQ"
     gene            7852..8622
                     /locus_tag="RJ285_000394"
     CDS             7852..8622
                     /locus_tag="RJ285_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HDV7383207.1"
                     /translation="MTLVLIILVILVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSSKKELSLDEAFTILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEKLKIGVEKFQKINEAYEKVKKHLER"
     gene            8625..10157
                     /gene="purH"
                     /locus_tag="RJ285_000395"
     CDS             8625..10157
                     /gene="purH"
                     /locus_tag="RJ285_000395"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDV7383208.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLDFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRGFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            10256..10717
                     /locus_tag="RJ285_000396"
     CDS             10256..10717
                     /locus_tag="RJ285_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383209.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     NTVSTSVFQTMRMAMNLGDPEKIKEAIEDVKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENINGVVYLRLIRPLIADESCVTCHEMLMQEV"
     gene            11174..11707
                     /locus_tag="RJ285_000397"
     CDS             11174..11707
                     /locus_tag="RJ285_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDV7383210.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGSIQKATRMMDKIADKTKLPSLNAGIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVAQITKELLQSINEVNAELKKNTQSIQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENI"
     gene            11723..11842
                     /locus_tag="RJ285_000398"
     CDS             11723..11842
                     /locus_tag="RJ285_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HDV7383211.1"
                     /translation="MQENVEVSEKNEEISKILLQVADELKIVCHNLESELNQF"
     gene            11858..12292
                     /locus_tag="RJ285_000399"
     CDS             11858..12292
                     /locus_tag="RJ285_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HDV7383212.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQDQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            12391..13368
                     /locus_tag="RJ285_000400"
     CDS             12391..13368
                     /locus_tag="RJ285_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HDV7383213.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVS
                     EFQKVLLIAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIVENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPKPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            13365..14252
                     /locus_tag="RJ285_000401"
     CDS             13365..14252
                     /locus_tag="RJ285_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDV7383214.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            14249..15121
                     /locus_tag="RJ285_000402"
     CDS             14249..15121
                     /locus_tag="RJ285_000402"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HDV7383215.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFNKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(15133..16479)
                     /locus_tag="RJ285_000403"
     CDS             complement(15133..16479)
                     /locus_tag="RJ285_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDV7383216.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENQHYAKLEY
                     EQNVSILPQFTYNINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGAPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            16528..17871
                     /gene="pif1"
                     /locus_tag="RJ285_000404"
     CDS             16528..17871
                     /gene="pif1"
                     /locus_tag="RJ285_000404"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HDV7383217.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            17881..18615
                     /locus_tag="RJ285_000405"
     CDS             17881..18615
                     /locus_tag="RJ285_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383218.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGTNVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTLEKFLDKKYKIELDDI
                     YIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPS
                     VPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFK
                     ENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(18612..19121)
                     /gene="lolA"
                     /locus_tag="RJ285_000406"
     CDS             complement(18612..19121)
                     /gene="lolA"
                     /locus_tag="RJ285_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDV7383219.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLAAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            19221..21809
                     /gene="secA"
                     /locus_tag="RJ285_000407"
     CDS             19221..21809
                     /gene="secA"
                     /locus_tag="RJ285_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDV7383220.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNTPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            21806..23011
                     /locus_tag="RJ285_000408"
     CDS             21806..23011
                     /locus_tag="RJ285_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7383221.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSNNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            23034..23819
                     /locus_tag="RJ285_000409"
     CDS             23034..23819
                     /locus_tag="RJ285_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7383222.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELIRGTPLLVQVLLMYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLILTLPISIFSRYLERKCQK"
     gene            23881..23956
                     /locus_tag="RJ285_000410"
     tRNA            23881..23956
                     /locus_tag="RJ285_000410"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23914..23916,aa:Lys,seq:ttt)
BASE COUNT         8602 a         2924 c         4344 g         8091 t
ORIGIN      
        1 tcataacttg gcattatgaa aaaattttta taagcaaaaa cttcaccttt taaaatgtga
       61 taatctttaa atcccaagct tttaaatgtg tattctccta gacaaagcaa aaaagcaggt
      121 tgaatcagtt ttagttcgtt ccagaaaaat ggtaagcaag attgtagcga aaaatcatca
      181 aattttccat tacaaaaaca tttaaataaa taagaaaaat aaaaatcttc atcgcaaagc
      241 cctaaaattt gataaatata gtgttttaat ttttcacctt tttttgaatt aagtaaaatt
      301 ccgctttcat tttcactctt ttgcccaaaa acatcaagaa ttagcaattt gacatttttt
      361 atcttaggtt ccataagact aaattttctt gttttggaaa attggcataa ggtgcaagat
      421 gaaacaagtt gttttaattc ttgaaaattt tgtacttgtt caaagtggtt tgtatgtgta
      481 tcaacaaagt taaatcccat agcttttaaa taataaagac ttcttatcat aaatcacaca
      541 atttttctaa attttctcca cttagacgat aatttctcca ttgtttaaga tgtttagcgt
      601 ttaaactttc ataaaaatta atacctaaaa tattatcatt taagcaaacc cagtcgagtc
      661 tttttaaatt ttcttttttg caaatttctc ctaaaaattt aaacacagct tttccataac
      721 cttttttacg aaaattttct cgtatataaa tatcttcaag ataaattcca ccgctgcccc
      781 aaaaagacga aaaagtataa aaataaatca tatagcctat agttttttca ttttctttta
      841 acaaaaaagc acgagcaaat ttatttttta gtaaagaatg ttccagtttt tcttttgtgc
      901 attgaagaaa atctaacata tcttcgtatt ttgcaaattc tatgatcatt tcttgtaaaa
      961 tatctaaatc ttcttgtctt aaatcaataa ttttaaattc tgacattttt aaccttttaa
     1021 aaataatttc aaaatttatc aaaagaattt aaaaattact cttaatcaaa agcaatttat
     1081 aagtaagatt aagataaaat acaagtttat tttataattt tttaaggaaa aatcaaatga
     1141 aaagaactta tcagccacat ggcactccaa gaaaacgtac tcatggtttt cgtgttcgta
     1201 tgaaaactaa aaatggtcgc aaggtgatca atgcaagacg tgctaaaggt agaaaaagac
     1261 ttgctgtgtg aaaaattttg ataaatttag cacaaacgag gaattttcat ctgtatataa
     1321 agtaggtaaa aaatggcatt gcgaaggtgt gattattttt tatctgaata gttatgaaaa
     1381 aaaaatagca gttgttgcta gtaaaaaagt tggaaaagca gtggttagaa atcgttcaaa
     1441 acgaatttta agggctttgt ttgctaagtt tgaaagatat cttcaagatg gcaaatatat
     1501 ttttgtagct aaaaatgaaa tcactgaact ttctttttct aggttagaaa aaaatctaaa
     1561 atggggattg aaaaaactag aatgtttcaa atgatatgcc taaaaatact ccgtttttat
     1621 cagaaattct taagcccttt aaaacccgct gcttgtaggt attatcctag ttgttctgag
     1681 tatgcgcttt ggcagtttca aaaaaagaat ttttttctag cttttttttc tacttttttt
     1741 agaattttaa gatgcaaccc tttttttaaa gggggttttg attatcctag agtttctaaa
     1801 aatttttatc ctataaattt atgttttaag cctatatttt tagcagaaaa acaactttgt
     1861 tttttatata taccttataa aaataaaagt ttttatctta taaaaatcat ctttaaaagg
     1921 acaaatcagt gaataattca aataatattt ttcagcaaaa gcgtatactt ttagctgttg
     1981 tgatttcttt tttatttttt gttatttatg attatttttt cattccaaag caacctttaa
     2041 aaatagaaca aaacattaca caaaaaaatc aacaaaacac aagcataaat aacactccta
     2101 atatacaaaa taccaccaca aatactccaa gtgcggcttt agtttcgcaa gatagtgtga
     2161 tatctaaggt tcaaagcaag cattttgaag cacaaattga ctcttttggt agaatttctg
     2221 ctttttattt aaaagataga aaataccaaa atgagaaagg ggaatttata aatcttatta
     2281 gcaaggaaaa tagtccttat cctttagaaa tgcgttttag tgatccaagt attaactcag
     2341 aggcttttaa aattccttat gtcgctaacg ctagcaatct ttttgttgat gaaaatggaa
     2401 gtcaagtttt aaaactcact caaaatcttt ccggattgaa aatcgaaaaa gatattactt
     2461 tttatccaaa agggaattat gagatagaag ttaaactcag caagaatgca aattatttta
     2521 taagtccagg atatcgtcca aatattgccg tagatagtta tacggttcat ggtgctttag
     2581 taatggataa taaagaaacc atcgaaactt ataaagatgg agatgtagaa aaggatgaaa
     2641 gtgctaataa tgtcgtaatg acttcggctt ttgatagata ctatgcaact ttcttttata
     2701 attttgataa acctttaaat gtggcaatca gcaaggatgt taatcaaaac cctatagttt
     2761 ttgcttatag tgataatgaa tttaaagcag ggggctatat aggctctaaa gaacatgtga
     2821 ttttaagaag tatagatcca cgccttgaag cagttgttga atatggttgg tttactttta
     2881 ttgctaagcc tatgtttgag tttttgaatt tcttgcatca gtatatagga aattggggtt
     2941 gggctatcgt tgtgatgact ttaattgtgc gtattatttt attcccgcta acttataagt
     3001 ctatgatttc tatgaataaa cttaaagatc ttgctcctaa aatgaaagat attagagagc
     3061 gttataaagg cgatccacaa aaaatgaata tgcacatgat ggagctttat aaaaaacatg
     3121 gtgcaaatcc tatgagtggt tgtttgccta tacttttaca aattcctatt ttctttgcta
     3181 tttatcgcgt tttgcttaat gctattgagc taaaagcagc tccttgggcg ttttggatac
     3241 atgatttatc ggtaatggat ccttatttca ttttgcctat tttaatgggt gcaacgatgt
     3301 ttttacaaca acttattaca cctatgacta tacaagatcc tatgcaagct aagattatga
     3361 aatttttacc agtgattttt acttttttct ttatcacttt cccagcagga cttacgcttt
     3421 attggtttgt aaataacctt tgttctttgg ttcaacaatg ggttatcaat aaaatatttg
     3481 ctaaagaaca tcacaaaaaa acaagcggag catgaaaaat gaaaatcgaa gccattgatc
     3541 ttcaaagtgc cttaacagaa gcttcaagaa gtttagaatg ttctgtgatg gacttagaat
     3601 atgagattat tcagcatcca agaaaaggtt tttttggatt tggaagaaaa aaggcaatta
     3661 tagaggctaa agcaaaaaaa aggattttga aaaaaaatcc taaaaaagaa tttacaagtt
     3721 caaaaaatca caaaccagaa acacatgagc caaaacaaga aaacaagatt gaaacaaaaa
     3781 atgaaaaaaa taaaagccaa aaagaaaaat atacagtaaa aagtgatgaa atttttgata
     3841 gttttcatcg agaaagcaaa ggagtgcgta atactcagga tattttagat gagattcgca
     3901 ttcagcttgt aaaactttta gaaagctccc agtttaaaat agagcttagt gaacttagaa
     3961 tgtatgatga agattgcgtt ttgattcgat tggatgggga agatgctgct ttgatgatag
     4021 gtaaagaagc acatcgttac aaggctattt cttatctttt acataattgg atcaatttaa
     4081 aatataatct tttagtgcgc cttgagatcg ctcaattttt agaaaatcaa attcaaggta
     4141 tgcagcttta tttacaaaac gtgattgaaa aaattaaaat tcatggacgc ggacaaacca
     4201 aacctttaga tggggttttg ataaaaatcg ctttagagca gttaagagct gaatttccag
     4261 ataagtatgt aggaattaag caaaataatg atcaaagatt tgttgtaata aacgactttt
     4321 tcaaaaaaga tgagtgatac tatagcggct attgccacag ctcatggtgt gggttcgatt
     4381 tctattgtaa gattaagcgg tgaaagggct ttagaatttg ccttaaagct tagccacaaa
     4441 accaaactta ccccacgcca tgctactttt acaaaacttt ttaatcaaaa taatgaaatt
     4501 atcgatgaag ctataatgat atattttaaa gccccttata gttttacagg ggaagatata
     4561 gtagagtttc aaactcatgg aggatttagt gtgagtgaag ttttactcga agaacttgtg
     4621 agtttaggag caagacttgc tttagcaggg gaatttagca aaagagcgtg tttaaatggc
     4681 aaaatgactc ctttaaaagc tttaaatata caagatctca tactttcaaa atctgcactt
     4741 gcagctaaaa ttatagcacg caacatgcaa ggaaacttag gaaaactttt agaaaaaatt
     4801 cgcacagatt tggttaaaac cttggctttt gtagaaacta gcattgatta tgctgatgat
     4861 gatttacctt ctgatttatt agaacaaatt tctactatgt gtgaagaaaa ttctaaaatt
     4921 ttaaaagaaa tttatacact ttctcaaagc aaaaaaggac ttatagaagg ttttaaaatc
     4981 gctattgtag gtaagccaaa tgtaggcaaa tcttcgcttt taaatgcctt gctttcttat
     5041 gaaagagcta ttgtttcaga tatagcaggc accactcgtg atactataga agagagcttt
     5101 aaattaggaa cgcatttatt acgcattata gatacagcag gtattaggga aagtaaagat
     5161 gctatagaac aaatcggcgt agctttaagt aaaaaaagtt tagaagatgc agatattatt
     5221 ttggcagtct ttgatgcttc aagagtgcaa gataaagaag atgagaaaat ttttgactta
     5281 ttagcaaata ctgataaaaa aatcttttgg attttaaata aaagtgattt agaaaatgtt
     5341 ttcaaaaata ctcaaaataa aaattttatc aagcttagtg ctcaaaaaga catcacttta
     5401 ttaaaagaag aattgcaaaa ttattttaat tcttttgata gcgaaggtat tatggtaagt
     5461 tctttagatc ttattaatgc ttgtaaaatt tcaagtgaag cgatttttag agctaaaggg
     5521 cttttagagg aaagttcttt agaacttttt gcttttgagc ttaatttagc gattaatgaa
     5581 cttgcaagat ttaccaaaga ttttcaaaga gatgaaattt tagacgaaat gtttggtaat
     5641 ttttgtttag gaaaatgaaa ggataaaaat ggacaaagaa accataaaag cacataaaat
     5701 cagtgatgaa gaatatgcac aaattttaga aattttagga cgcgagccaa atttattaga
     5761 acttggggtt atttctgcga tgtggagcga gcattgctct tataaatcca gtaaaaaata
     5821 tcttaatggt tttccaacta aagcaccttg ggtgattcaa ggcccaggag aaaacgcagg
     5881 ggttattgat attgggcaag gtatggcagc agtttttaag gtagaaagtc acaatcatcc
     5941 tagctttatc gagccttttg caggtgcggc tacgggagta gggggaattt tgcgtgatgt
     6001 ttttactatg ggtgcaagag tggttgcagg gctaaattct ttaaaatttg gcaatattca
     6061 tgatgaaaaa tgcggcaaac atcaaaaata ccttgttaaa ggtgtggtaa atggaatttc
     6121 tcattatgga aattgtatgg gtgtgccaac tataggtgga gaatgtgctt ttgatgagtg
     6181 ttttaatgga aatatcttag ttaatgcctt tgctttaggg gtttgtaaaa gtgaagatat
     6241 cttttatgct aaggctgaag gtgtaggaaa tcctgtgatt tatgtgggtt caaaaacagg
     6301 gcgtgatgga cttggtggag cggttatggc aagtgatagc ttcaatgaag aaagcaaatc
     6361 tttgcgtcct acagtgcaaa ttggcgatcc tttcagtgaa aaacttctta tggaagcttg
     6421 tttagagctt tttaaaactg attatattgt gggtattcaa gatatgggtg ctgcagggct
     6481 tacttcaagt tcttttgaaa tggcaggaag aagtggcagt ggcatgaaac tttacttaga
     6541 taaaactcct atacgtgaaa gcggtatgac tccttatgag ttaatgctta gcgagtctca
     6601 agaaagaatg cttatttgtg cgaaaaaagg ctatgaagat aaggttatag aaattttcaa
     6661 aaaatgggat ttagatgctg tggttatagg tgaagttacc aatacaggaa aaatggagct
     6721 tttttggcat gatgagcttg tagggcttat tcctatcgag cctctaagtg aaaaagcgcc
     6781 gattttaagt cgtcctataa gtgagccaaa atatttaagt gaaattaaag attataaatt
     6841 tgagctaaaa ttaagcattc aagagctttt tatacaaatg cttcaaaatg aaaatattaa
     6901 caacaaagct tttatttatg atcaatttga ttcaagtgtg caaaccaata ctataaaagc
     6961 tgatggaaga ttaggtgcta gtgccattcg tatcaaagaa aatggtgcaa gtgtggctat
     7021 ggctatagaa tgtaactcac gcttaaatta tgtaaatcct aaaataggag cagctttagc
     7081 agtagcttca gcaggaagaa aagttgcttg cacgggggct aagcctttgg caataagtga
     7141 ttgtttaaat tatggaaatc cgcaaaatcc tgaagtgatg tggcaatttg cacaaggttg
     7201 cgaaggcatt aaagaagctt gtaaagagtt aaatacccca gtagtaagcg gcaatgtttc
     7261 actttataat gaaactgaag gcgtaagtat ttatccaagt cctactatag taagcgtagg
     7321 ggttttagaa gatgcaaata aaaccttaaa agctagtttt gaaaaagaaa atttaagtgt
     7381 ttatcttttg ggtgaaagtt taggggaatt tggtggatct atggtaatga aaatccaaga
     7441 taaaaaagta tcaggaagtc ttaaagagct tgattataaa gctgaaattg cactttggga
     7501 tttgctttat aaagccaatc aaaattcttt acttgagtgt gccaatagcg taggaatagg
     7561 gggtattgct atgactttgg caaaaatgtt tgctatttct agtgtgggtg taaatttaac
     7621 aagtggtttt gatgatgaaa aaatgatttt tgatgagagt gcaagtcgtg ctatagtagg
     7681 gcttagcaaa gaaaatgaag aagctttttt aaatttagcc aaagaatttg gagtaaaagc
     7741 ttataaatta ggtgtgagta caagccaaaa acattttaaa cttgataaca ttgagttaag
     7801 caaggctgaa cttgacaagc tttattttga aagttttaaa gagcaaatcc aatgacttta
     7861 gttttaatta tactcgttat tttggtgttt tactggtatt ataaaacttg gggaaaacag
     7921 gattttttaa actcagctac aagaggagcc aaaggctttg ctaagggttt tgctcgtggg
     7981 gttatggaag aaagaatgga tgagtttaaa aggcgtatga attactatgt tatcgcactt
     8041 ttggcaaaaa ttgcaaaaag tgatggtagg gtaagtgaaa atgaagctga aatgatcaaa
     8101 gatcttttag atgcaaatgc caaagatgaa aaagaaagag cttttttaaa agcaagtttt
     8161 aatgaacata aagaaaattt aagtgatgct ttttatgtgg caaaagattt tttaaaagaa
     8221 gtgcctttgc ctaaaaatga gcgttttaat gtcttgcgtg tgcttgtttt tatggcttta
     8281 atcgatgcag attttaatgc taaaaagcgt gaaattttag agcaaatcgc taaagccttt
     8341 gatatagcaa aaagcgaatt agacgctttt atagcaagtc tttcaaattt aaaaagttct
     8401 aaaaaagaat taagtcttga tgaagctttt actattttag aacttccaaa taatgcagat
     8461 ttaaatgcgg taaaaaaaca ataccgcaat ttagcaaaaa aatatcatcc tgatatttta
     8521 aatgcaaaca atgttagtga agaaaagctt aaaatcggtg tagagaaatt tcaaaaaatc
     8581 aacgaagctt acgaaaaagt taaaaaacat ttagaaaggt aaaaatgaga gcattactta
     8641 gtgtgagtga taaagaaggc atagtagaat ttggcaaaga gcttgaaaat ttagactttg
     8701 agattctttc aacaggcggg acttttaagc ttttaaaaga aaatggaata aaagttatag
     8761 aagtgagtga ttttacaaag agtcctgagc tttttgaagg gcgtgtgaag actttgcatc
     8821 ctaagattca cggtgggatt ttgcataaaa gaagcgatga aaatcatatc aaacaagcaa
     8881 aagaaaatga aattttaggc attgatctag tttgtgtaaa tttatatcct tttaaaaaaa
     8941 ccactatcat gagtgatgat tttgatgaaa ttatagaaaa tatcgacata ggtgggcctg
     9001 cgatgataag aagtgcagca aagaactata aagatgtgat ggtgctttgc gatccgcttg
     9061 attatgaaaa agtgattgag actttaaaaa aaggtcaaaa tgatgagaat tttcgtttaa
     9121 atttgatgat aaaagcttat gagcatacgg caaattatga tgcttatatt gcaaattata
     9181 tgaatgaacg ctttaacgga ggttttggag cgagtaaatt tatagtaggg caaaaagtat
     9241 ttgatacaaa atatggagaa aatccacatc aaaaaggggc tttatatgag tttgatgcct
     9301 tttttagtgc aaattttaaa gctcttaaag gcgaagcaag ttttaataat ctaaccgata
     9361 ttaatgcagc tttaaactta gctagtagct ttgataaagc tccagctatt gctatagtaa
     9421 aacatggaaa tccttgcggt tttgctataa aagaaaattt agtacaaagc tatatacatg
     9481 ctttaaaatg cgatagtgtt agtgcttatg gaggagtggt tgcaatcaat gggactcttg
     9541 atgaggcttt agcaaataaa atcaatgaaa tttatgtaga agtaatcatc gcagccaatg
     9601 tagatgaaaa agctttagcc gtgtttgaag gtaaaaaacg cattaaaatt ttcactcaag
     9661 aaagcccgtt tttaatccgc ggttttgata aatatgattt taaacatatt gatgggggtt
     9721 ttgtatatca aaacagtgat gaagtgggcg aagatgagct taaaaatgca aagcttatga
     9781 gtcaaagaga ggcaagcaag gaagaattaa aagatcttga aatcgctatg aaaatagcag
     9841 cgtttaccaa atcaaacaat gttgtttatg taaaaaatgg cgctatggtg gctataggta
     9901 tgggtatgac aagtagaatc gatgcagcaa aggcagcaat cgctaaagct aaagaaatgg
     9961 gacttgattt gcaaggttgc gttttagcaa gtgaagcctt ttttcctttt agagatagca
    10021 tagatgaagc aagtaaagta ggggttaaag ctatagtaga accaggcgga agtataagag
    10081 atgatgaagt ggtaaaggcg gctgatgagt atggtatggc gctttatttt acaggagtaa
    10141 gacatttctt acattaagtt taatggaatg ttatgttttt tacacataat tcaataaaaa
    10201 ttaaataaat tatgtgtaaa atatttccga aaaattttat ttttaggaaa ctatgatgtt
    10261 taaaactata ggatttaagg tttctgctgc aatttttgtg gtgttgctta taagtttcat
    10321 tgtaatgcaa gtgattttaa atttggattt taaaaatact gccaataaaa tgagcagggc
    10381 aaatttaaat accgtaagta cttctgtttt tcaaacaatg agaatggcta tgaatttagg
    10441 agatcctgaa aaaattaaag aagccattga agatgtaaaa agtatagagg gtattagtga
    10501 tattaaaatt tatccttcaa aagatactat agatcttttt gagatgaaag cccctcaaat
    10561 ttcaaatgat aagcgtatta tagaacaatt ttcaaatcct aaaattcaag ctttagaaga
    10621 aaatataaat ggtgttgtgt atttaagatt gatacgccct ttgattgcag atgaaagttg
    10681 tgttacttgt catgaaatgc taatgcagga agtgtgattg gggttatgga tatatcacat
    10741 tctttagaag gtgtttaaaa agatataagc aaaaccggtc aatcttatat tataatattt
    10801 actattgctt tgatttttac cctttgtggt ggttctttta atgcttaaag ttgttgttgg
    10861 aaagcccgtt ttagagcttt taaatcatgc taaagaatta gctcaaggaa gcggcaattt
    10921 taaaagctcg tatttcagtt aaaggtcaag atgaaattgc tttagcttgt ggatatatca
    10981 atcaatttat cgaaaaaact cacaaggcag ttagcagtgc aagtcataat ttaaaaaatg
    11041 tagaaaaaca aagcaatctt ttaaattcaa atgctatttt ttaagtgata tcagttcaca
    11101 aagtcataag caaatagatc aaagttttaa acttggtgca aatgttggta atgaacttag
    11161 agaacttgct agtttgtcaa ataaggcaaa tagtgccaat gaaaaatcct ttttattatt
    11221 agagcaaatg cttaaatctt tgtttaatgt tgctaataaa gtatcaatag tatcccaaaa
    11281 tgaaaatgaa ttggctaaaa aagttgaaaa catggtcaat caagcaggta gtatacaaaa
    11341 agcaactcga atgatggata agatcgcaga taaaacaaaa ttaccatccc taaatgctgg
    11401 catagaagta gctagggctg gtgcatttgg actaggtttt tctgtaattg ctgaggatga
    11461 taggcagttg gctcagaaca gtgaagaatt tttgggaaat gtagctcaaa ttacaaaaga
    11521 gcttttgcaa agtattaatg aggttaacgc agaattaaag aaaaatactc aaagtataca
    11581 agctttaaat gatgacaccg ctttattggt tgatgatgct aatgaggtta aattatgtaa
    11641 cgaagatgct agggctttgg taactcaatg tactgaaaaa ataaaaattt cccaagagaa
    11701 tatataaaat ttactttctc gtatgcaaga aaatgttgaa gtaagtgaaa agaatgaaga
    11761 aatttctaaa attctacttc aagttgcaga tgagttaaaa atagtgtgtc ataatctcga
    11821 aagcgaactt aaccaatttt aaatttaaag gaataaaatg aaaaaaacgc ttcaaattgc
    11881 tttagctgca actttttttg caggttgtgc tagtacttct gttacttcat ctacttctaa
    11941 aggtaataat gaacttgtac aagatcagct tttcaaaata gaaaaaatta tagttaatgg
    12001 taaaactttt gatccaaaaa acgcagagga aagtccaaat attagttttg aaaataataa
    12061 attttatggt tattcagggt gtaatcgttt ttttggttct taccaaacta aggcggatac
    12121 tttgcaaatc gaaggtgatc gcgtagcttc aactcaaatg ctttgtcatc caatggatgt
    12181 aatggatttt gaaaattctt tcctttcaaa tttcaaagga atttttaaaa tttcaaatga
    12241 aaatggaaaa cttgttttaa gtaatgatga aatgaagatc ttttttaaat aataccctaa
    12301 agcctcgaaa tatcgaggta atcttcttaa atttgacaaa agtctaaaaa atgatacaat
    12361 tataatttta ttatcaaaaa aggtagttaa atgataaaat caattcctga atggagtgag
    12421 caagaatacc tcatgctttc tttaccccat gaaaaaagcg attggaatcc ctacttagag
    12481 gaaattttgc aaagttataa agaatttgta aaagtggtaa gtgaatttca aaaagtttta
    12541 cttatagctc ctaaacagag tgattttgaa aattttaaag atataaaaaa tgtagagtat
    12601 tttaaatgtg ataccaatga tacttggata cgcgattttg gagctataga tatagtagaa
    12661 aatggtcgtt taaaagctct tgattttact tttaacgctt ggggaaataa atttcaaagt
    12721 gagcttgata atgctgtaaa ttctaagctt tttaaagaaa aatttaaaga ggagcttaaa
    12781 aaggttgatt ttattttaga aggaggaagt attgacttta atggagaggg tgtgatgctt
    12841 acaagctctc attgtctttt aaatgaaaat agaaattctc atctaaacaa aacccaaatt
    12901 gatataaaat taaaagaaat ttttggttta aaacaaatta tttggctaga aaatggtttc
    12961 ataaaaggtg atgatacgga tcatcatatc gataccttag caagatttat agataaaaat
    13021 accatagcac attgtatttg tgaagatgaa gaggatgagc attatttgcc tttgcaaaaa
    13081 atgaaagaag agcttaaaaa aacaggcttt gatttagtag aacttcctat acctaagcct
    13141 ttatactatg aaggaagaag attgggcgca acttatgcga attttgtttt tataaataat
    13201 gctttaattg tgccttttta taaggataaa aatgatgaaa tcatagctaa aagactttct
    13261 aaagctttac ctagtcataa aattatagga gtagatgcaa gagtgttttt acgacaaaac
    13321 ggttctttgc attgttcttg tcaaaatcgt ttcaaaggtt taagatgagt ttgcaaaaaa
    13381 aagcaactct tgtagcaagt ttatgtgcca ttgttttagc cttggttaaa tttatagtag
    13441 gcttaacaag tggttctgtt gcagtacttt caagtgcgat tgattcttta atggattttg
    13501 ctatttctgc ttttaatttt ttggctctta aaaaaagctc acaaaaggcg aatgaaaatt
    13561 ataattttgg tttttctaaa attgaagctt taatgggttt gttagaaggt gtttttatag
    13621 ttggcgtggg gatttttatt ttttatgaga gtattttaaa gatttattat aaagaagaaa
    13681 ttaaagattt aaattcaagc atctatgtga tgatttttgc tttaattatg actttttttc
    13741 ttgtactttt tttaaattat gtagctaaaa aaaccaaaag tttgattata gaaagtgatg
    13801 ctttgcatta caaaacagat tgcttaacca atgcttgtac tttaggggct ttggttttga
    13861 tttattttac aaatttacat attattgatg ctatttttgg gatagtgatc agtctttata
    13921 cggcattttc tgcttttaaa atcattaaaa aagctttagc ttttttaatg gatgaggctt
    13981 tacctaagga acaagtggat aaaatttgta ctttgatttc taataatcct gaaataattt
    14041 cctatcatga attaaagacg cgtaaaactc caagttgtaa ttatttaagc gtgcatttgg
    14101 ttttttgccc tataatttcg cttttaaatg cgcataaaat ttcagatgaa atagaagaag
    14161 gtgtgcgtaa gatgtttgaa aatgaaaaat gggatataca aattcattta gatccttatg
    14221 atgatgcaga acaagaaagg caaagacaat gaaaatcgct ttaatacaac aaaaatttca
    14281 tttaaataaa gaacaaacta taaaaaaaac ttgcgaattt atagaagaag cctctaaaca
    14341 aggagctgag cttgtttgct taggagaact tcatcaaagt gagtattttt gtcaaagtga
    14401 aaatgtggat ttttttgact atgctaatga ttatgaaaaa gatgtgaaat tttgggcaaa
    14461 tatagctaga aaaaatcaaa tagtgcttat tgcttcattg tttgaaaaac gaagtgccgg
    14521 actttatcat aatactgcag tggtttttga aaaagatggt tctatagcag gcaaatatcg
    14581 caaaatgcac atacccgatg atccttgttt ttatgaaaaa ttttatttta ctcctggaga
    14641 tttgggtttt gaacctataa atacaagttt aggtaagctt ggagtgctta tttgttggga
    14701 tcagtggtat cctgaagcag caagaattat ggctttaaaa ggagctgaga ttcttattta
    14761 tcccacggca attggttggt ttaataagga taaagatgaa gaaaaacaaa gacagctcaa
    14821 tgcttggctt ggcgtacaaa aaggacatgc tatagctaat ggtttatatg tagtagctat
    14881 caatagggta ggttttgaaa aagatgtaag cggggtagaa gagggcatta gattttgggg
    14941 aaattctttt gtttttggcc ctcaaggtga agaactttgt cttttagatt ctcaaaacga
    15001 atgtgtaaaa atcatagaaa tagataaaaa aagaagtgaa aatgtgcgtc gttggtggcc
    15061 ttttttgcga gatagacgca tagaatattt tgcagattta actaaaagat ttattgatta
    15121 aatcaataaa tcttatttgt tttgtatatt ttcaagatag ctttttattt gctctttttc
    15181 ttgttcgttt aaatttataa aacttatttc tttaagtctt gataaaagca aattatcttc
    15241 taaaatttca ttttttccta tttctaaaga agtgatgacg ctagaactta tgagaagtct
    15301 ttgggttgca tcttttctta agccccatat attatgtatg gcaatattat tatctgtaat
    15361 ttgtcctgca taaagcataa tatgtccagg taaataaagt aaactaagat aagctttccc
    15421 aaagcggttt aaaaaatctt ttttttgaga attgctaaga gtgcttatat caaaatgatt
    15481 aaaagaattt ttttgtgcag ctgaatttct tggtagataa agtccaaaag ctgaaaagat
    15541 atcacgagtt agtaaagaac aatctctttc aaaattataa ccgccccagc cataaggcaa
    15601 atttaaaact tgtgaaagtt gattttttaa atttttatca ttgaattgta aaggaaattt
    15661 agatacatct tttttagaaa ttttatattt tttagaacct atttttccat aaaaatagtt
    15721 tttatcttct ttgtagtaag gatagatagc accaattcta ctttcaaaga aaaatttacc
    15781 atcctcgcta tagatagcaa atttttcttt tagtggtgtg ataaagttga gattttcata
    15841 gattttcgct ctatcgtttg agaaaaattc caaattttta ctttcaacaa atccaaatcc
    15901 agcttcacct aaaacaaaag cataacgctt atctttacta aaatgtgaaa ttaagacagg
    15961 ggctccagta tttaaaatgc catcgcttgc atagtcaaaa ggaattcctt cattttcaaa
    16021 aaaaggattt tttaagatag ctctttgggt tggaagattt ttaatgattg tattttggat
    16081 aatcaaagct ttttgattaa gtttgccaaa ttcttggata tttgcgttat ttatagcatt
    16141 tttaaaccat gaaagcggaa taatttgttt attgaaaaaa taataagtat tttttgaatt
    16201 taaatataaa ggaaaggacc aaaaaatatt ttgtcctttg tagtttttaa atgaatcatg
    16261 ccaagggtta aagaaatatt ttttatatcg ttttgcatca aaattaatat tgtaagtaaa
    16321 ttgtggtaaa atgcttacat tttgttcgta ttcaagtttt gcataatgtt gattttcatt
    16381 tttttgttct aaattttcat gatgaagcga agttaaattt tttgttgaac aagctgttaa
    16441 aaatagcact ataaaagtaa aatataaaca agatttcata atcaaccttt tagaaaaaat
    16501 agttataatt aaagctaagg aaatataatg cttgataaac tagaaaaaat tttagcttat
    16561 gataatgttt ttttaagtgg tggcgctgga gttggtaaaa gctttttgac aaatgagctt
    16621 atcaaatctt atagaaaaca aaaaaaatta gccatagctc ttggttctag tgctctatcg
    16681 gcgtttaata taggcggtgt tactttacac agcttttttt gtttagggta ttgtgatgat
    16741 atgatgaaat taagcgcatt ggatcgcaat caaaaacaaa aagaaaaatt aacaaaactt
    16801 aaagagcttt taaaaacgat tgagcttatt attatcgatg aaatttccat ggttagcgca
    16861 aatgtttttg aaatgatagg ctttagactt aaaaattctc aatttaatgg aaaaatttta
    16921 gttgttggag atttttttca actgcctcca gtaattaaag aaaaaaaaga aactttattt
    16981 aaccattctt attatgcttt ttcttcattt ttttggcaag atttaaattt taagaatatt
    17041 aaactttctc aacctaaaag aacgcaaaat atggaatttt ataaccattt atctttgatt
    17101 agacaaggtt ttttagatga aaaaatttta agcttttttg aatctttgcg aattgattat
    17161 aaagaattag aaaatttaga agatgattat actttacttt gtggtatcaa taaaaaagta
    17221 aacaatatca atcaagaaaa attaagcaaa cttgagaccc cgcttgtatg ctttaaggct
    17281 caggttaaaa aagaagataa gagaataaaa gatgaagagc ttgattcttg gattagaagc
    17341 ttaaatatat tggaagaatt aaatattaaa ataggcgctc gtattatttt ttgcgtaaat
    17401 aattgggata agaattatta taatggagag caaggtatta tagaagatat tctttatgaa
    17461 gaggagaaaa tttatattag cattattaaa aataatggga tgaaaatttt acttgaacct
    17521 tatacttttt tcatggaaga acttgagcaa tcaggtaaag attttgttgt taatattctc
    17581 gcaagtgtta cacaatttcc tattaaatta gcttatgcta ttactataca caaatcacaa
    17641 ggtatgagta ttgaaaaatt agtgtgtgat attgatcata tttttgaaaa tggacagctt
    17701 tatgtcgctc tttctcgcgc tacaaaccca aatactttaa aaatttattc tacaaaaaag
    17761 ataaattttg gattttattt tgctaatatt ttaaaaatag attctaatgt gattgaattt
    17821 tataaaaaac ataatttttt agatctcgaa atacaagaac aaatcattta aaggcattaa
    17881 atgaaaaaaa tatttttaag tgtttttttg gttttgagtt taaatgctca aaatcttgaa
    17941 atagataaaa taagaacaga tttgtattct aaaagtggga caaatgttct taaaaaagtc
    18001 gaaatttctt tggaatttga tgggaataat ttaaaagaaa atgaaaataa gttaattgat
    18061 gctgtaaata cagtaatttc agggtttttt tacgaagata tttttacaga aattggaaaa
    18121 aataatttca aaaaaacttt agaaaaattt ttagataaga agtataagat tgaattagat
    18181 gatatatata tcatatcttt aagcggagtg gaaaaatttg atttagagga gtttaaacgc
    18241 tttttagaaa gtactgaggc taaagagaag ggtatgggta gcgaggtaaa aaaagcactt
    18301 gaaaacttag aagttcctaa aactcaagtt cctagtgttg aaaagatccc aactcctagt
    18361 gttccaaatt tagaagtcaa gcaagttgaa cagcttttca aagatccaga tgaagaaaat
    18421 aaaaatgaca atggagaaat caatatagat aatttaaata cacctaaaat gactccagat
    18481 atagaagaaa aaattaaaag agatttaatc gccaatcctc cacaaatatt caaagaaaat
    18541 aacgcaagca agccttatca tttgccacaa acaggctatg atataaagct tgatgaaaat
    18601 tcaacgcaaa attagcgaac tatatcataa ttttgcggaa tttttgcctt gaaaatatcg
    18661 gagttgattt ttggattttt aatttgattg tttagattga ttataacatc attttcaaat
    18721 tcatctttat aggatatgct ttgaatttgc tcttgattaa gcttaattgt atagtttata
    18781 ttatcatatt ttgctgcaag tttatcctta tctataagac ttgctttttt gaaaatttca
    18841 ttaagatttg gaatgttatc aagatgagag aaaatgactt gttctagatc gtgctctact
    18901 atggttactt gatttttgtt gatataaatc tcttttttac taggagtatc ataactccaa
    18961 tatgcttgat ctttgctcag tataaaatgc ccagaataag aaagtgtaga gtttttggat
    19021 ttcactattt gggtaaaatt gcttgaaaag gtattaaaat taagatcaag ggcaaaaagt
    19081 tgtcctataa aaataaaaaa tatcaagaat gtttttttca tttattttcc ttaaaaaaat
    19141 atatttttta tgtcattcta gctaatttta attaaataat cgttataatg atagtttgaa
    19201 aaatttataa aggtttaaaa atgtttttaa atactttaaa agccgtgttt ggcacaaaaa
    19261 atgatcgtga agttaagaaa tatttcaagc gtgtagcaca aatcaatgct ttagaaggca
    19321 actatcaaaa tttaagcgat gatgaattaa aagccgaatt tgcaaaattt aaagagcaaa
    19381 ttttaagcgg agaaaaaaac gaaaatgatg ttttaaatga tgtttttgct atagtcagag
    19441 agacaggtaa gagaacttta aatatgcgtc attttgatgt gcagttaatc ggtggtatgg
    19501 ttttgcacga tggaaaaatc gcagaaatga aaacaggaga aggtaaaact cttgtagcaa
    19561 ccttacctgt tgttttaaat gccatgagtg gcaaaggcgt acatgtcgtt acagtaaatg
    19621 attatctagc caaaagagat gctgagcaaa tgagtgcgat ttataatttt ttaggtttta
    19681 gtgttggcgt ggtgctttct tctcaaaata gtgatataga acacaagcaa gcttatgatt
    19741 gtgatattac ttatggaacc aataatgagt ttggttttga ttatttgcgt gataatatga
    19801 aattttcaaa agctgaaaaa gttcaaagag agcataattt tgttatcgta gatgaagtag
    19861 atagtatttt aattgatgag gcaagaactc cgcttatcat cagtggtcct acaaatcgta
    19921 ctttagatgg ttatattaaa gccaatgaag tagctaaaca aatgcaaaaa ggtgaagcag
    19981 ttttaccccc tgcaaaacct gagggtgatt ttgtagtaga tgagaaaaat cgtaatattt
    20041 taattacaga agcaggtatt gctaaggctg aaaaactttt tggcgtagaa aatttataca
    20101 gtcttgataa tgctatctta gctcatcagc ttgatcaagc cttaaaagca cataatcttt
    20161 ttgaaaaaga tgtgcattat gttttaagaa ataatgaagt tatcatcgtt gacgaattta
    20221 cagggcgttt aagcgaagga cgtcgtttta gcgaaggatt gcatcaagct ttagaagcta
    20281 aagaaaatgt aaaaattcaa gaagaaagcc aaactctagc agatattact tttcaaaatt
    20341 attttagaat gtacaataaa cttgcaggta tgacaggaac tgcacaaaca gaagcgactg
    20401 aattttctca aatttatagt ttagatgtta tttctatacc gacaaatatt cctattaaaa
    20461 gacaagataa agatgatctt atctataaaa ctcaaaatga aaaattcaaa gctgtaattg
    20521 aagagattaa aaaagccaat gctaaaggtc agcctgtact tgtaggaacc gcaagtatag
    20581 agcgcagtga agtttttcac aatatgcttg taaaagagaa aatccctcat catgttttaa
    20641 atgctaaaaa tcacgagcaa gaagctttga ttatccaaga tgcaggtaaa aaaggtgctg
    20701 taactatcgc tacaaatatg gcaggtcgtg gtgtggatat aaaaatcgat gatgagatta
    20761 gggctttggg tgggctttat atcatcggta cagaaagaca tgaaagccgc cgtattgata
    20821 atcaacttcg tggtcgtgca ggaaggcagg gtgatcctgg aataagtcgt ttttatctaa
    20881 gtttagaaga taatctttta agaatttttg gtggggatcg tattaaaagt attatggatc
    20941 gcttgggcat agaagagggc gaaagcatag aatcaagaat cgttacaaga gcggttgaaa
    21001 atgcgcaaaa aaaagttgaa agcttgcatt ttgaaagcag aaagcatttg ttagaatacg
    21061 atgatgtagc aaatgaacaa agaaaaacta tttatcgtta tcgtaatgag cttttagatg
    21121 aaaactatga tattagagct aaaatttctc aaaatatcgc tgaatatagc gcaaatgtaa
    21181 tgaatgatta tatgcttgac gaaagcggtt ctaatgtaaa ttttgaaaat ttgaaagcaa
    21241 aaattttgta tgaatgttca actcagatta gtgaaaaaga ttttgagaat ttaagcgtca
    21301 ttgaaatgca agacaagcta agtcaaattc ttgaaaattc ttataatgaa aagatgttaa
    21361 gacttgagat taaagaattg cgtaatatag agcgtatttt atatttgcaa gttttggata
    21421 atgcttggag agagcatttg tatcaaatgg atattttaaa aacaggaata ggacttcgtg
    21481 gatacaatca aaaagatcct cttgtggaat ataagaaaga aagttataat cttttcttgg
    21541 agttggtcaa tcgtattaaa tttgatagta ttaaactact ttttagcgtg caatttaatc
    21601 aagaagaggc gcaaaattta gaaaataaag ccaatgaaga aaatgaaaag ctacttcaaa
    21661 gctcagtaga aatgggcgca agcgaagata atcttggcga agctgaattt aaaaaagttc
    21721 cacgcaatac tccttgtcct tgcggaagtg gaaaaaaatt taaagaatgc catggaaaaa
    21781 gtggtcctaa gcaaggaatt ttagcttgaa taaaagcgtt ttaaaatatt tactttttaa
    21841 gtatttaaga tttgataaag agcaaccctt tatcaatctt tctatgcttt tggccttttt
    21901 aggagtttgt gtaggacttt gcgttttgct tgtagctatg gcaattatga atggttttga
    21961 taaagaattt gaaaaacgct tttttgtgat gaattatcct attactattt tgcctaaatt
    22021 ctatgctcct gtaaatgatg aatttataga tgagttaaga aaaacatttc caaatttgtt
    22081 atttagccct tatttaagca ctcaagttgt tgtaaaggga gataatcgtt ttgaaggtgg
    22141 tgtgcttttt ggcgttaatt ttaatgatga aaaaaaaata aacgaagtgg ttgctaaagc
    22201 tttaaaggat gagaatttaa gtggttttga tatacttgta ggatcagcac ttactgatga
    22261 atttggtttg cataaaaatg acaaactttc acttattttt tcaaatctta atcctagtgg
    22321 attttcttta gtaccgcaaa ctaaacgttt tgatgttaaa gcgcgtttta cttcagggct
    22381 tgcattttat gataaagctt atatgtacac agatgttgat gcattgaaaa aagtacttgg
    22441 aatacctaaa aatccaaatt atgatggaat tcatgtatat agcaataatg cttttaagga
    22501 tgttgaaaaa attaaatctt atttaaaaga tgattatgct gtggtgggtt ggtgggagca
    22561 aaataaaaat tttttttcag ccttagaact tgaaaaaaga gcgcttttta tagtgttgat
    22621 gcttattatt ttggttgcaa gtttaaatat agtaagttct ttattgatga tagtaatgaa
    22681 tcgtcgcagt gaaatagcac ttttacttgc tctaggtgca agcaaaaatg aggtaaaaaa
    22741 gagttttttt gccttaggta tgcttattgg tggtggtggt atgatagtgg gtgtggtact
    22801 tgcatttttt gctttatggc ttttgggaaa ttttgatatt gtaactttac ctgttgatgt
    22861 ttatggaacc agtaaattac cacttgattt gtctttaatg gatttttctt taaccattgt
    22921 gggtgcttta ataatcatag ctttatcatc tttttatcct gcaaaaaaag caactcaaat
    22981 taatatttta gatactttaa gaaatgaata aattgtaatt ttggagattt ttattgtctt
    23041 tgtttactca aaaaaataag aattttaaac ctttaaaacc tctatcaaag tcaaaaataa
    23101 tcactaattt aattcttttg attttatttt taatattgtt ttgttattgt agttttagta
    23161 taagtgctta tcattttgat tttagcgcaa ttgcaaccta taaagaaaaa tttcttcaag
    23221 gttttttaaa tactttaata atcagttttt tttctttatt actgagtata attttgggtg
    23281 gagttttttg tgctttttct ttaagttcaa ttgttttttt aagattttta tctacatttt
    23341 acatagagct tatcagagga acccctttac tagtgcaggt attattgatg tattatatca
    23401 ttgcaaataa tttaggactt gataatcgat atgtggctgg agttattatt ttatcatgtt
    23461 tttctgctgc ttacttagct gaaatattta gagctggaat tttaagtatt tctatatctc
    23521 agcttgagag cgctagggct ttagggttaa aagagatgca ggtttttgcg tatgtaattt
    23581 ttccccaagc tttaaaaaat attttagcac cgctgagtgg acaatttgca aatttaatta
    23641 aagatagttc cttattaagt gttattgctg taaatgaatt aacccaaagt gcgcaagaga
    23701 taaattctta tacttttgct actcttgaag cttatgtaat tttggctatt acatatctta
    23761 ttttgacttt acctataagt atattttctc gttatttgga gagaaaatgc caaaaatgat
    23821 ttaaaaaagc ttgacaaata gagctaattt tggcataatc acatttttat ttcagaaaat
    23881 gtctcgttag ctcagccggt agagcatctc ccttttaagg agggggccgt tggttcgaat
    23941 ccaacacggg acaccattat a
//
LOCUS       DAPIWU010000013        22692 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.013, whole genome shotgun sequence.
ACCESSION   DAPIWU010000013 DAPIWU010000000
VERSION     DAPIWU010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22692
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.013"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            49..978
                     /locus_tag="RJ285_000411"
     CDS             49..978
                     /locus_tag="RJ285_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HDV7383223.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSYNADNSNSSFIPFIGVELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYATGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAAGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIILTGIGYKF"
     gene            complement(1028..2342)
                     /locus_tag="RJ285_000412"
                     /pseudo
     CDS             complement(1028..2342)
                     /locus_tag="RJ285_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
     gene            complement(2523..3458)
                     /locus_tag="RJ285_000413"
     CDS             complement(2523..3458)
                     /locus_tag="RJ285_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HDV7383224.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            3529..4761
                     /locus_tag="RJ285_000414"
     CDS             3529..4761
                     /locus_tag="RJ285_000414"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDV7383225.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            4758..5843
                     /locus_tag="RJ285_000415"
     CDS             4758..5843
                     /locus_tag="RJ285_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HDV7383226.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMLFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(5840..6637)
                     /locus_tag="RJ285_000416"
     CDS             complement(5840..6637)
                     /locus_tag="RJ285_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7383227.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFSLSNFV
                     FGSDWPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(6648..7940)
                     /locus_tag="RJ285_000417"
     CDS             complement(6648..7940)
                     /locus_tag="RJ285_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDV7383228.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVVFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDSFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGAIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(8059..9063)
                     /locus_tag="RJ285_000418"
     CDS             complement(8059..9063)
                     /locus_tag="RJ285_000418"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HDV7383229.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLAMDVDIL
                     "
     gene            complement(9073..10026)
                     /locus_tag="RJ285_000419"
     CDS             complement(9073..10026)
                     /locus_tag="RJ285_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HDV7383230.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(10013..10705)
                     /locus_tag="RJ285_000420"
     CDS             complement(10013..10705)
                     /locus_tag="RJ285_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HDV7383231.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(10865..11434)
                     /gene="efp"
                     /locus_tag="RJ285_000421"
     CDS             complement(10865..11434)
                     /gene="efp"
                     /locus_tag="RJ285_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDV7383232.1"
                     /translation="MASYSMGDLKKGLKVEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDEDVGE
                     AKKWMIDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            11550..11873
                     /gene="rnpB"
                     /locus_tag="RJ285_000422"
     ncRNA           11550..11873
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="RJ285_000422"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(11870..12145)
                     /locus_tag="RJ285_000423"
     CDS             complement(11870..12145)
                     /locus_tag="RJ285_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383233.1"
                     /translation="MKQWLNNFKLALIQEDVDKLEILLDELDVKNFVKNLVKSQPSEE
                     MLKENVKDIFYQLQALLQEAIVLIDQKKKTKAFEIQKFQKALTYVRS"
     gene            complement(12126..12512)
                     /gene="fliS"
                     /locus_tag="RJ285_000424"
     CDS             complement(12126..12512)
                     /gene="fliS"
                     /locus_tag="RJ285_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HDV7383234.1"
                     /translation="MQNSLAYNAYSQNQAGIESPQKLIEMLYEGILRFCSRAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLDYEKGGDVAHYLSGLYTREIQLLSLANLENNEER
                     INEVINVTKGLLEAWREVHSNETMAQ"
     gene            complement(12523..14451)
                     /gene="fliD"
                     /locus_tag="RJ285_000425"
     CDS             complement(12523..14451)
                     /gene="fliD"
                     /locus_tag="RJ285_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HDV7383235.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDSGFINANLTGTTDLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGKYTSDSEA
                     ETIFKNLGWELDTTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKQGSLNQYLDSSGTGNKGL
                     DFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYDQNGVKGFKLNFSGDGSSDFSIKGNATILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLSTITNMINAANNSNN"
     gene            complement(14454..14819)
                     /gene="flaG"
                     /locus_tag="RJ285_000426"
     CDS             complement(14454..14819)
                     /gene="flaG"
                     /locus_tag="RJ285_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HDV7383236.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDRQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(14976..16778)
                     /locus_tag="RJ285_000427"
     CDS             complement(14976..16778)
                     /locus_tag="RJ285_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HDV7383237.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(16775..17698)
                     /gene="hemC"
                     /locus_tag="RJ285_000428"
     CDS             complement(16775..17698)
                     /gene="hemC"
                     /locus_tag="RJ285_000428"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDV7383238.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(17695..18084)
                     /locus_tag="RJ285_000429"
     CDS             complement(17695..18084)
                     /locus_tag="RJ285_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDV7383239.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(18081..19790)
                     /locus_tag="RJ285_000430"
     CDS             complement(18081..19790)
                     /locus_tag="RJ285_000430"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDV7383240.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIIGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVATEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKNEIELIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(19774..21072)
                     /locus_tag="RJ285_000431"
     CDS             complement(19774..21072)
                     /locus_tag="RJ285_000431"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDV7383241.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(21072..21965)
                     /locus_tag="RJ285_000432"
     CDS             complement(21072..21965)
                     /locus_tag="RJ285_000432"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HDV7383242.1"
                     /translation="MQKIDELIKQFLEELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(21979..22515)
                     /locus_tag="RJ285_000433"
     CDS             complement(21979..22515)
                     /locus_tag="RJ285_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HDV7383243.1"
                     /translation="MFKISPYLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(22518..>22692)
                     /locus_tag="RJ285_000434"
     CDS             complement(22518..>22692)
                     /locus_tag="RJ285_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HDV7383244.1"
                     /translation="VFEEFFADHIAMVELLEKQGLTEMDVKNFILENGDFIEERQNDI
                     YIELGAKILGHEG"
BASE COUNT         7951 a         4090 c         2816 g         7835 t
ORIGIN      
        1 ttataaatgt aatttaatta caaacaacaa acatttcaag gagaacattt gaaaaaatat
       61 ttattttcct gtgttttagc ctccatttta acccaatcag ctacggctgt agaatttcaa
      121 gaaggtttta gtggaaattt aagcataggt gtgggtgcaa gggatattaa aagtaatatt
      181 tcaaccttgg caaacagcga ttatctaagc agttacaatg ctgataattc aaactcctct
      241 ttcattcctt ttatcggtgt agaactttac tatggtaatc ttatagataa tgatagaatt
      301 tttattaaaa actacaatgg aagagatatc agcggtatag ctttaggcta cgaaagagct
      361 tatttagagc gttttagcac ttctttttct gtgatttcct ctttaagaga aaaagcttat
      421 gcaaatcctt atgcaacagg aaatagagaa gaaactgatg ttgatagata tggttttaaa
      481 atctctcaac tttatgaaag tgattttggg aaatttacca cttcatattt atttagcaaa
      541 aacaaatatg ataaagacac tatcgcacaa agctctttaa aaagggaggg gtattatcac
      601 gaatttgaat taaactataa ttatagctta ttaaacctag ggttaaatta tgattacaat
      661 gatgcagacg gaaaagctca aagctattca agatatggtt ttagcatagg gacaaatttg
      721 gcttttgcta atgattacat cttcactcca aatttaaatc ttagtaaata tgaagcagca
      781 ggaactgatc ctatcttcca caaaaaacaa gatggtaata tagttaagct taatctaaaa
      841 gttgttaaaa atcaattttt gggttataac ggactttatg gttttgcaaa ttatggcata
      901 gaaaaaagaa atagcgatat aggattttat gatgaaacct atcaaattat cctaactggt
      961 ataggatata aattctaaaa aattataaaa aaagctcctt tgataaaatt taaaaaagat
     1021 ctatctccta taaagataga tctttaaaaa ttcttttaag aaaaatacaa gctaaaatca
     1081 aaacacaaaa ttcagcaaaa aatggactta gccatactcc atttaaacct ataaaataag
     1141 ataaaagcaa aagaaaaaac aaaggtataa ataaattttg cgccaaactt aaaaccaaag
     1201 aaaagcttgc cttattaaaa gctgtcaaaa aagaaccact tagaacatta aaccatgcaa
     1261 aaaaataatt aaaagcaaaa agcatcaaag ctgtataagc aaaagtttta aattcttgat
     1321 tgttttcttt tgtaaaaagc gtgattaaat tttctccaaa tatcaatata agcactatag
     1381 agaataaaga taaaaatccc cctgcaaaaa ataccacttt tacaatagct ttgattcttg
     1441 aaaaatcttt tttagcatag ttgtaactaa gcacaggctg cattgcatca cccatagcaa
     1501 taataagcat tataataaaa ctatcaatat ataaaactat agaaaaggct gccacggctt
     1561 gagtatcaga aatttttaat aaaacaaaat ttgcaaaaat actatataaa gatcctgaaa
     1621 tattgccaaa aaactcactg cttccgttat aaagaatatt tttaaaaatt tttaaattca
     1681 tgtataggct tgaaatttta agctctaaat tttgaaacaa gaaaggaaaa attccaaaaa
     1741 taccacctaa aacaagtccc aaacaagttg caagagcagc tgaaaataag ccccaaccca
     1801 actcgactat aaaaatataa tcaagcacta tattgcttaa tgctataatt acattcatta
     1861 ccatactata agcagttttt ccgcaaattc ttaaataatt atccaaagca aaagaaagca
     1921 tagtaaaggg tgcaaacaaa gcaaaaacaa acatacattc tttagccatc gttttaatct
     1981 catcgctaac atttaaacaa tcaatcaaaa caggtcctaa aaaatactct aaaattccaa
     2041 taaaacaaga gattataaaa ataatcaaca tacttgagct aaatatcttt ctagctaaat
     2101 tcttcttgcc taaacctaaa tgcatagaaa tttgcactgc tgatcctatg gctatcatat
     2161 cagccaaagc aaaagacatc atgataaagg gaataatcaa ggctagtgcc gctaaagcat
     2221 cacttcctag atattttatc aactatataa taaaaagaaa taaaagccat gcttataaca
     2281 tttggcacgg cacattttac aaaaagccta aaagggctta aggtgctaaa aatacttgac
     2341 ataataatcc ttaaaatatt taaaattaaa aatattttaa accgctaata aaatgccaaa
     2401 agtcctagta tgtaagaatt taaataaagt aatttcgcaa taagtttatt aatatttatt
     2461 ttattttgca tatgaatttt ctagattaaa ctaaaataaa aatttagccc aaaggctaaa
     2521 ttttaaagca cagaaagaat tttcacagcg tcatttaacc ctgtaactat acttgctcca
     2581 tttttagtag caatatctcc tgctacaaag atgcctttaa cattgctttg tttgttttca
     2641 tccattaaag gcacgccttt atcatcaaca ttaatcccac atttttgtaa aaaatcaagt
     2701 ggagtagaac caccaatagc ataaatgatt ctatcataaa tatcgcttgt accatcggta
     2761 aaatttactt tagctttgcc attatcatct tctacttcat taatgtcaat tcctaatttt
     2821 aactctacct tacccgaatt tccagcttcg tgaatatctt taagatttat atcatttaat
     2881 cttgtaaatt cttttttacg ataacaaagg ctaacttgat ttgaatttgc caaatccaca
     2941 gcgtattctg ctgctgaatt tccgccacct acaacaagaa ttttttcatt tcccaaaact
     3001 gaattggcat taaaattaat gatttttgtt aaagtcatag gaagtttgta atcaggttta
     3061 ttaggtttac ccattctacc tatagcaaca ataatgtttt tacactcata aacaccttta
     3121 gctgtactta ctaaaaaaac tccattttca tttttaacgc tctcaacttc agaaccaaat
     3181 tcaacttcta tattgtgctc ttttaaagcg ttttgaaaag tttctatagt gctttctttg
     3241 gtgccatctt caaaaggaac atgtccgtga ttggttcctt cgcatccctt ataagcttta
     3301 tctactcttt tgccatcctt ataaaattgc attaaagttt gacaaatgtt atttgatttt
     3361 tctagtatca aaacttcttt gtttttaagc ttggcttcaa ctgcacagcc tatccctgtt
     3421 ggacctgcac ctactacaat taaatctatt tttttcattt atatttacct ttcaattcta
     3481 aatttttttg tataatttat caagtttttt gtaaataaag gattaaaaat gcgaaatttg
     3541 cttgaaaata ttaagaaaaa ttctcaaaaa ctacttaact taacgcccaa agataaagaa
     3601 aaaattattc taaaattagc tcaaatttta agagaaaatt tcaaaattat cctagaagca
     3661 aataaaaaag atatggcaaa tttcacaaaa agcggagcaa tgaaagatag gcttttgtta
     3721 gatgaaaaac gtattttagc tctttgcgaa ggcctagaaa aaatcgctta catcgaagat
     3781 cctataggca aaatttctaa aggctggaaa aattatgcgg gtttaaacat acaaaaaata
     3841 agcattcctt taggactcat ttgtgttatt tacgaagcaa ggcctagtct tagcgctgaa
     3901 atcgcagctt taatgataaa aagttccaat gcttgtgtat ttaaaggcgg aagtgaagca
     3961 aaatttacaa atgaggctat atttactctt gttaataaag tacttaagga atttgatttg
     4021 caagattgtt ttgctatgtt tacccaaaga gatgaaatct tgcaaattct agcctttgat
     4081 gatttaatcg atgtgatcat acctcgcgga agttcaaata tgatacaaga aattgcaaac
     4141 aataccaaaa ttcctctcat taagcaaaat aaaggcttgt gtcatgcttt tgtagatcaa
     4201 agtgctaact tagatatggc tttaaaaata atccttaatg caaagtgtca aagagtaagt
     4261 gtttgtaacg ctttagaaac gcttttaatc catgaaaaaa ttgctaaaaa ttttataagt
     4321 cttttaatac ctgaatttga aaaatttaag gtaaaaattc acgcccatga aaatgctttg
     4381 gcttatttta acaactcaaa tttagaaatt tttaaagcaa atgaaaatac ctttgataca
     4441 gaatggcttg attttgcttt aagtgtaaaa ttagtaaaag attgcgatga agctatagag
     4501 catatcaata aacacagctc cttgcattct gaaaccatta tctcaaatga tgcttcaaat
     4561 atcgctaaat ttcaacgcct tataaactca tcttgtattt atgctaatgc ttcaacgcgt
     4621 tttagcgatg gaggagaatt tggctttggt ggagaagttg gaatttcaac cagcaaattg
     4681 catgcaagag gtcctatggg gattgaagat atttgcactt ataaatatat aatcaatggg
     4741 gaaggacaaa ttcgagagtg aataaaatag aaatactaaa gcaacacttt aaagaaattg
     4801 ctaaattaaa ttcaagcgaa caagtttggc aaatgctttt ttttgcggct ttaggcgtag
     4861 gtatagtttt agggcttagt gtattttttg gaaaattaaa ctatggactc attgccatga
     4921 taggagcttt gtctttttta tatgttccaa acactccttt atatcataga atggctgttg
     4981 tgatgtgctg ttcttttggc atagtttcta gttttttctt aggaatttta actcattttt
     5041 tgcctgcaat ttttgccttc atccccatag gaattatggc catgggaagt tctattttaa
     5101 ttagatacta taacattggt gcacctggat attttttctt tgtattttct tgtgttttag
     5161 gagcctattc tccttttgaa gctaaggatt ttatcttttt agtaggtctt gtttttcttg
     5221 gagcaatggt agctaattta atggctttgt tatattctat cgttgtgatt tatggattta
     5281 aaaatgcttt acctagcgaa attccaccta gagaatacat aggttttgat gcagtttttg
     5341 tggattcttt gatcatgggt tcttttgtgg ctttttctat atttatagga acttttttag
     5401 aacttgaaag aagttattgg atagccattt cttgcacagc tattatgcaa ggtgtaactt
     5461 taaattctat atggattaaa caaattcagc gcatcatagg aacggcctta ggagtatgtt
     5521 ttgcatggtg gcttttatct aaacaatttc acgatataga gcttatttta cttatgatgt
     5581 ctttgttttt tataggacaa tttttagtca atcgaaacta tgctttagct atgattttct
     5641 ttactcctta tgctacttat ctttcggaag cagctaattt tatgagtgaa aatgcagata
     5701 aattaatact cgctcgttta attgatgttg taataggaag cattttaggg cttttaggtg
     5761 gttttgtaat ttacaaacct tatctaagag tacattttga acgcattgca aaatacatct
     5821 ttaggataaa acaaaaagct taaaagccaa ataaagcaca agcattatcc cctaaaattt
     5881 gctcttgttc ttttttagat acgacaactt cattaaaagc tactagagcc gatgaaaaat
     5941 taacatttga ttcaaaattt gtatgtggcc aatcgcttcc aaaaacaaaa ttgctaagtg
     6001 aaaaatgttc ttttaaaatt tcatatattt tctttgcaaa ttttacagct tgttcattat
     6061 tagcatagtc tatttttgct ctataaaaac cgctaatttt aaaaaatatt ctagagtttt
     6121 ttaagcaaat taaatcctct aaatttgtta agtttgcatt agctcttgct aaatgatcga
     6181 taacaatatt acaaccataa ggaattaaat tttcaacaat atcaacaaga ttattatcta
     6241 aatctctttg aatttctatt tgcattttaa gcttacttaa attttcaaaa aattgagtcc
     6301 aaaccatact tttaaaattt ggtaattctt tgccaattaa atttaatcta actccacaag
     6361 cttttctttc ttttagtttt ttaagctcat caaatttaat attttcatca accacaacta
     6421 tagcttttat attttcatct ttttctatac tctgaagcaa aaattcatta tcaataccta
     6481 aaaaacttgg ctgaactaaa acccctttat taaaatcata atgatctaaa tttgctttat
     6541 aatctttaaa actagcgtca taatcaggct tatatcttgc atttgcaacc gtatttaact
     6601 ttttcaaaaa tatatgtgcg tgagtatcaa tcttcattaa attatcctta taaaataaaa
     6661 ctcattataa tagtagctaa aatcgccgct ataaatccta taggcacagc tttaataagt
     6721 aaatctttaa ataatttttc cttatattta tcagggcaag atcctaaaat tagacttcct
     6781 ccagaagaaa aaggagaaat agcagaagct tgagccccta caacaataca agaaaaaagc
     6841 aatgcctcgc ttaatccact acttgcagca atgcttggaa ctataggaaa aagcgctgga
     6901 gtaaccacac ccaaagtact tgaaaaaagc gacataaaag ctgcaatagc acacattatt
     6961 aacggaataa aaatcacatt gatctcattt tctacaagat ctgaaaataa ttttatagcc
     7021 cctgcttcaa ccgctatgct aattaacatc cctactccac aaatcattat caaggttccc
     7081 caaggaatta aagcaacaac ttgtttctca tcggccaatt ttaaaaataa agcaatggca
     7141 acaaaaatca tggctatcat agctatatct atttttttat taaaataact aattgtctca
     7201 ttatgtggaa aaataatatt tagcacagga aagattaaaa caacaacaat catcataaac
     7261 ataagaatta aagtagtttt ttgtttataa tcaaatgaat caggttttga aataacactg
     7321 atttttatat tatttttaaa agcattaaac acaaaaaaag ataataccac aataggcaaa
     7381 attatagtaa aagcaaaaat aatactagaa tttacaaaag cttcatttgc ttcaatgcct
     7441 gaattttcca tcaatcctcg aaaaataatc ccactttgag aagtcataaa atttgctcct
     7501 cccaaagcac catagtttat agccatagct ccagcaattt tgcttaaacc gattttatcg
     7561 caaagtaaaa aagtaagtgg tgccataaaa gctaaaactg tataaaaacc tgctcctaaa
     7621 gcagctataa tagcactaac cacaaaaaca acaaaaggaa gcaaataagg atgattagca
     7681 aaacgataca tcaaatgtcc agctaatttt tcaagagttc catttacggt tgcaaaatta
     7741 taaaacaatg aaacagcaaa aataacaaaa aatatagaaa taggccaaaa agctatgatt
     7801 tttttaggag ctaaatccat aaaaaaagct cctataatat aagcaaaaat catagcaaaa
     7861 attccaacat tatgtctagt aatatagccc aaaataatag ccactataat actagagatg
     7921 attaaaaaaa ccattatcat cctttaaaat attatagggc ttataatatc aaaaaatata
     7981 tttttcaaag cataaaaaca aaatctaaat ttaaaaaata tctatttagt aacaaattta
     8041 ctcatcttat gaaatttttt ataaaatatc cacatccata gcaagcaaag caaagcttcc
     8101 tagccaatgc gacccaagat aatcatcttc tatatgagct atggctttat caaaatgctc
     8161 tgtagcatta tttcttaaaa gaatttttaa attttcatcg caaaaatttg aaagtatttt
     8221 aaaacaccaa gcacgactta aatttagccc atctagatgt gctattttac catcgctcct
     8281 atcactcaca ctcacagggg taaataaagt tgcaggctct tttgcttcta aatttggcaa
     8341 atatgcttta aaaaatttta caaaatcatt tttatgtaaa acagcactta aaagcaccgc
     8401 ttccatcaaa acaggagata aaaactcatc tccacaaggc tctaaagctt gcatattttt
     8461 atcatttaaa aaccactttt tagcactttg gatgatgcaa tactccaatt cttgatcttt
     8521 tttaaatctt gcatattcta aagcaaaata caaagcaaaa gagctattaa aatgggttcc
     8581 aactcgtata ggataatcca tcttaggtaa aaactcctta aattctttaa caaagaaatc
     8641 agctatgcct tctaaattct tagcccaaat ttcagctttg tcattttctt tagcaagtaa
     8701 atttatctcc aaagtcagtt ttaaaaacca tccccatcca taaggtcttt caaaaccttt
     8761 gtgtgcaggg ttttgaagat atttaagctc tccttctgct ttttctttgc taaattgaga
     8821 atctagagct ttgatgattt catcctttgg agcaaaatga gaaaaatctt ttaaaatttt
     8881 caccaaaagc cagtgagaat gcacgctaga atgccaatca taagaaccat aaaatatagg
     8941 atacataagt tttggtggtt taatatcatt gatatcatta aaagaatgtg taattttatt
     9001 tggcaattct ctaaaaatat tttctagtgc aataaagcta aattgtttta taaatttttc
     9061 cattgtttct ccttaaaatc taaaagctaa aaaatacatt aaaaagatat tagccacaag
     9121 caaaacaagt cctgacataa actgggcttt aattacgcca tttttatcat ccaaatttaa
     9181 aagtgctgca ggaactatat taaaatttgc agccataggc gtcattaaag ttccgcaaaa
     9241 tccactaagc attccaatcg cacctataat agcaggattt gcatgcattt gtatgattaa
     9301 aatcggcaaa gcaatagcag cagtaatcac aggaaaagct gcaaaagcat tgcccattac
     9361 tatagtaaaa agcgccatag cgatacaata cacagctact gcaataaaag cattatctaa
     9421 actaatataa ctagataaaa gtttagatac ttgatcgccc attcctgtag aaacaaaaac
     9481 taccccaagt gtagccaaaa tttgcggtaa aagcgctgcc caactaatgt gatccatagt
     9541 atgtgctgca tctttaacag ctcttttagg agaagcctta aacataaaac aagcaactac
     9601 tgaagaaata attataccta taatcaaagc catcaatgta gcatttttat tttcaaaaaa
     9661 actcaaatag ggaaataaaa aagtcccaat aagtgtaatc aaaggaacca ttaaagcagg
     9721 gataaaaagt ttatttttat aaatatttgc atgttttatc tcgtattctt tttcttcttt
     9781 gctaacttca atctttgctg gttttaataa attaaatcct gctataagtg ctagtaaaat
     9841 cactatacaa cccatcacaa aatgaggcaa aactcctgct agtaaaaaag taaaactata
     9901 acttatccag aataccccgc cgcttattct tgattttata tctttagctt gattagaaaa
     9961 acttaaaatt ccaaaaacta aaaataaaat tcctacaata taataaagca aatcaagact
    10021 tatcatcact caacccttta taagtttttt ctaatctttt atcaaataaa taaagtctag
    10081 aacaatggat aattaaagcc aaaattccag ttggtatagc ccaaactgat aaatgcaatg
    10141 gctcaacaat aataccattg ctctcataaa aagctttaat aaataaaata gaatgcacgg
    10201 ctataaaaat atcctctcca aaaaatacag caacattatc cgttcccgca gaaaaagctt
    10261 tgattttttg actatcttta tgtgttaagt ttttaaattt aagcttagct gcagcttctg
    10321 ccataggggc tattaaaggt cttatcatct gtgcatgtcc gcctaaagat aaaagcccta
    10381 aagctgcagt aacttgtcta aaaacaaaat aacacattaa aattcgtcct gtactggcaa
    10441 cttttatttt ggatattaaa tttttagcct gctctcttaa gcctttgcgt tccaaaacag
    10501 caagtaaagg taaaataagc caaattatag caacatagcg attatctaca aaagattttc
    10561 ctatatcact aacaacctta acaaaatcaa aacctgaaac aagtccagca taaattccaa
    10621 ctgaagttac cactaaaaag gggttaatct ttaaagcaaa acctaaaaca atcaaaggta
    10681 tagaagcaag aagtaaccat tccatcaacc atctccacaa tatgaattag aaatattata
    10741 gaaattttaa attgaagaaa agtttaaaaa aatattttta agaatggaat gagaaattaa
    10801 gtaacaaaat aaattttata taaatttaaa aaagccttgg aatagtccaa aagctttttt
    10861 tgtattattt gttcgctctt tctatatact caccacgcac ggtatcaacg cgtataactt
    10921 caccttctaa cacatgaaaa ggaatttgca ctactgcgcc tgtttccaat gtagccggtt
    10981 ttttatttga tccttgagta tcacccttaa aatttggagc tgtttcgatg attttgagtt
    11041 caacaacttg tggaacttct acgccgatag ctttaccatt atggaaaagc acgtctacca
    11101 tcataccatc aatcatccat ttttttgctt cacccacatc ttcatcacta attgctactt
    11161 gctcataagt ttgcgtatcc ataaattgac aattttcacc atcatcataa agatactgca
    11221 tagtcttatc ttctaaattt ggagcttcac atttatcccc tgcatggaaa gttttttcaa
    11281 gtaccttacc atcgataaaa gatttgattt taatacgcac aaaagcagga cctttacctg
    11341 gttttacatg ctgatactca actattttaa aaggaattcc atcaatttct actttaagtc
    11401 ctttttttaa atcacccatt gaataagatg ccataaattt cctttagtaa aaaaaataaa
    11461 aggtaattct atcaaatttt aattgatatc acaataaaac tgctttattt gataaaaaaa
    11521 taagcaaaat tacgttaaaa tctaaactta aagcatagta aatgctcgct tcttttttag
    11581 aagaggaaag tccgagctgc taaagacaaa cattccatct aacagatggc tagggcaacc
    11641 taagggatag tgcaacagaa agaaaactac cacattaaag tggaaaaggt gaaacggcgg
    11701 agtaaaagcc caccagcgat tttggtaaca atttcggcta tgtaaaccca atgtgcagca
    11761 agaagggatg gttagtgtct ttgttttaac ccttcgcttg attttgtttg caaaaacaaa
    11821 actagataaa tgagcattct tgacagaact cggcttatcg ctatgctttt taagatctaa
    11881 cataggtcaa agctttttga aatttttgaa tttcaaaagc tttagttttt ttcttctgat
    11941 caatcaatac aatagcttct tgcaaaagag cttgaagttg ataaaatata tcttttacgt
    12001 tttcttttaa catttcttct gaaggttggc tttttactaa atttttaaca aaatttttca
    12061 catcaagttc atcaagcaaa atttcaagct tatcaacatc ttcttgaatt aatgcaagtt
    12121 taaaattatt gagccattgt ttcattacta tgcacttctc tccaagcttc tagcaaacct
    12181 ttggttacat tgatcacttc attgattctt tcttcattat tttctaaatt tgctaaagat
    12241 aaaagctgga tttctcttgt ataaagccca cttaaataat gtgccacatc tccacctttt
    12301 tcataatcta aagtatttat aagctctata aaaatggctg tggttctttt tacaaaatac
    12361 actctttgct ctatatcttc atttcttata gctactttag ctcttgaaca aaaacgcaaa
    12421 atcccctcat aaagcatttc aataagcttt tgcggagatt ctatccccgc ttggttttga
    12481 gaataagcat tataagctaa actattttgc atctttttat ccttaattat tagaattatt
    12541 tgctgcatta atcatattag ttatagttga gagctgctga ttaagcttat ttaagatact
    12601 ttcatactgc aaccattgat ttgccattgt atcatatctt gtatcaatca tagcctgagt
    12661 tgagtcttta gaggtattta atgatttaat atcatttgtc aaactctcat catattttgt
    12721 aattgaacca tcttttccag tcatctcttg caacgtggct tttaattttg aaaaaatacc
    12781 tttaccttct ataggtttag aggttatatt tacatcagac aaacctaatt ccttaagaat
    12841 ggtagcattt cctttgatgg aaaaatccga actaccatct ccactaaaat tcaacttaaa
    12901 ccctttaaca ccgttttgat cataggattc aaccttaact tttaaacctt caataccttt
    12961 gctgtttata tgattagcta aattttgaag caattcttcc tctgtttttc ctgttaattt
    13021 aaaattagta ccatcagaat ttttagataa atcatatgtt tgattattaa aaactatagt
    13081 aaaatctcct ggtttaaaat ctaaaccttt attgccagtg ccactagaat caagatattg
    13141 attcaaactt ccctgcttaa ttacttctcc tgtgtgatta atgtcttcgt atttagtaat
    13201 atttgaaaaa aaactttcag tagagtctgg atcttcttta actttttgtt caaatttaga
    13261 agaatcaaaa ctcaaagtgc ctgcatcatt taaacttaag ccaaaatcct gcatagaaag
    13321 cataacctta gtgttcactt tattaccatt tgcatcttca gtagttccat caacaacttg
    13381 agaatcaaac aaatcagcaa gaatgcttga gcgtattgaa tttacttcac tgatgccttg
    13441 taaagttcct tttgttccag tttcactatt atagtcagtt gcagcattaa gattggttac
    13501 taaatcatta taagcatcca ccaaatcttg catggctttt gtcacacctt caaaatcttg
    13561 ctgtacatca aaattaattt cacctgtttt atttaaagtt aaagtcattc ctacaccaag
    13621 atcggtaaca gtgttacttg atctaaacat cttaatacca tcaagtgtaa attctgcatt
    13681 ttgcgcagtt tggatatgca aagaagcatc cttaatacca taaccttttt tatccttagc
    13741 tggatcaata gaactcgttg tatctaattc ccatccaaga tttttgaata ttgtttctgc
    13801 ctctgaatca cttgtatact taccattcga atcttttttt cccgcataga aacttatcgc
    13861 actgtcttcg cctgtttctt tactggttaa agttaagcgg taaggagtgc ctttctctcc
    13921 tgtgtttaca atcttagcaa caatctctcc tccactagct tcattaattt tatcagctaa
    13981 atctctatag gttgtgtttt tatctaccgt aacagtatat tctttgccat ttgaaaaaaa
    14041 agtaagatcg gtggttccag ttaaatttgc attaataaaa ccactgtcat ttgctaatcc
    14101 tttgctttga tacacatctt tttgtgcaag ttgagtaaca ttgatattca tgctttgtaa
    14161 agcaacaccc gaattaactg taagacttgc tggaggatta tcgctaatac ttcctacaac
    14221 ttttcttttc gcaaaaaccg tagcatcggc taatgatgaa acagccgtct gaaaacttag
    14281 taatttagtt ttgatttctg ttaaatcttt ttgtttggtt gtattttctt caattttttt
    14341 agtataagga tcaatacgag ctttttgctc tgcttctttt aatttatcta tagtatcttg
    14401 agttaaaacc ccagaaccaa atcctaaact agatagacta ccaaatgcca tttttaactc
    14461 tccttatcaa atatcattcc tatcacatcc ctaaaatact cagctaatct catagcttct
    14521 tcgctaggaa tttgacggat ttcccttcca gtgctttttt cagtcacgct aatatacata
    14581 gaaccgattt tatcactata accaaaacga acattggtat ctagagaatc catttgctca
    14641 tttaactttt ttgtaatatc agccaacttt tcactcacac ctcgttgctg tcgatcatcg
    14701 ccttcttggc cttgacttct atcggtttga atgtttaaac tagcctgtgt ctcacttgtt
    14761 ctttggctaa tgtttgccaa agctgtatcc atttgcccat ttgccttcga tatttccatt
    14821 ttaaaatcct ttttaaaatt tcctattgct agttaaaagc ttatatcgac aaatttataa
    14881 atttatgaac acctataaag aaaattttat ttttcaataa taaaaaaata ataagcaaaa
    14941 actgtgccaa aattttaaaa taaatctcaa ttatcttaaa aaatttcaaa tttattaaaa
    15001 agatctggat tattttctaa aatattacgc aagatcaaat cttctatcac gcttttagtg
    15061 caatctgttt gcttaggcca agctcttaaa taaccctcag cttcaccttt agcacttgca
    15121 tctactccaa gtctttcttc tttgataaaa atatctcttt tagcatctat attatttacc
    15181 acacgccaaa caagcatata agaattttca agcttatttt cagcatctaa aaacactaaa
    15241 atcctaaaat gttttttaaa ttctaaaagt ttgtcaaaac tttgttcgat tttttctttt
    15301 ttatcaagca aaatacaaac tataggactt ttactttctt tataaaattg ctttaaattt
    15361 aaaagttcta ccttagtttt aaaaagttct agtaattttt catcttctaa aatttcaagc
    15421 tcttcaactt gtatttcttc gcaagcatca agtcctgctt tacccccaaa acaagaatta
    15481 ggtgaagcat gatctaattg atcacaaatt ccttctgaaa ttaaaatttt ctttgtatta
    15541 aaacgatcta acatataagg aattaaagca tcataatctt tcaaagaagg tgcattttta
    15601 tccacaaaaa ttgcatgctt aacaaaactc atttgcccta ctccccaaaa tgcatgcata
    15661 atttgttgcg catgagcggg atattttgca tcgatttttg ctaagataag attatgaaag
    15721 accccatttt caggcatatt ataatcaatt aaatcaggta ctgaagtttg aagcaaaggt
    15781 aaaaaaattc tttcagtacc aagtcccatg atcttatctt ctaaaggagg ctttcctaca
    15841 accgttgctt gatagatcgc atctttttta gcataaattt tttctacttt catcacagga
    15901 aaaagttcag caggagtgta aaaacccgta tgatctccaa aaggaccttc gattttaaac
    15961 tcttctaaat ccacataacc ttcaataacc acatcactat cataaggtat aaaaatacca
    16021 ttttcacaag gagtaatttt tgcaggagtt tttttaataa aaccataaag taaaagttca
    16081 aaaattccct taggtaaagg tgcttgagaa caccaaatat aaagcggatc tccacctatg
    16141 gctatactta caggcatttt tttaaaacca gcatttttgt attcgtgata aaaatttgcc
    16201 ccatctttat gaatttgcca atgcattaaa agttcatttt tatcactcat ttgcaaacga
    16261 tacattccaa gattattttg agttttatct aaattttgtg tataaacttg ccccatggta
    16321 ataaatttac ccgcatcatc ttcccaagtt tttagtatgg gaagttcttc aagtgagttt
    16381 aaaatttcat aatcatacaa ggctttattt tttttcagtc ttttaggagg aatattttta
    16441 aaacttaaca aattcataaa aaaatccatt tttgctttaa aactcgtagg aatatgaagc
    16501 ttggtgagtt ttgaaatttc ttcagccacc tcttcataat cacgtccaaa agctaaattt
    16561 aaagcctttt cattgcaaaa agtattcatc aaaacaggaa atttatattg tttatttaat
    16621 tttttatcta taggattttt aaataataaa gccttccctt tttctccttt tttagcttct
    16681 atataggcta aatgagcgat ttcaagatct acatctacag gttcttcaat tacccttaaa
    16741 agatcatttt cttttaaaat ttgaataaat tctttcatat catactctca gcttttttta
    16801 aaagttcttt agcaccttta gcaataaact ccttagccaa actctctcca aaacctttaa
    16861 aatcattctt tttaatcatt ctcttatctt ttaaaatttc acttccatcg ggtagtccaa
    16921 gtaccgcacg cacgcaaatt tcatctccca agagctctgc gttaatacct ataggaactt
    16981 gacaacctcc ttctaaagta gcaataaatt ctctttcaat gcttgtttca atcaaagcat
    17041 tttcatcatt taaacatttt aaaagttcta aaattttttc atcatttatg ctttctatac
    17101 ctaaagctcc ttgagaagcc gcaggaataa gctcatcttt gctaaattca taaacaaaat
    17161 tcacttgctt atctaagttt aagcgtttaa ttcccgccat tgccaaaata atcgcatcaa
    17221 aatcattatt ttttaatttc tctatacgag aattgacatt accacgcaaa gaaataatat
    17281 ctaaatcagg tcttaataat aaaagctgca tcttgcgtct aagactagta gtgcctattt
    17341 ttgcaccttt tggcaaagaa agaaaatctt tataattttg acttagcata gcatcattgc
    17401 tttgctctct tttacttacc gctgccaaaa ctaaaccttg aggaaaaaaa ctaggcacat
    17461 cttttaaact atgcaccgct aagtgtgctt cttttcttaa catactttct tcaagttctt
    17521 ttgtaaaaag tcctttacca ccaatttttg ccaaaggaga atcaagcaaa acatcgcctt
    17581 ttgttttaaa accttctaaa agcacttcaa tttgatgtgt attttttaaa atttgggcta
    17641 catgttcact ttgccaaaga gctaattgac tttttcttgt tgcaataata agcttcattt
    17701 tctatcctct ataatttcaa catcaataat ttcttcatta gaattttgat actcttgctt
    17761 ggtgtattga tattttgatt tagttattaa tttcaaagca ataccaaaga aaaatacaaa
    17821 aattccaaaa acacttgtaa taatccctgg aaaaacaagt aaaaaccctg cgataacaaa
    17881 agaaaattgt gttaacatat cctttaagcc acccatttga aattcaagca tatttttcca
    17941 aaaaattccc aataaaaccg caccaaaaat catactcaaa agtatgaaaa ataaaaaatt
    18001 accaaaacca aaaaacacta taaaaagtat acttgcaata atttcaagta caaataaagg
    18061 gcttaaactt aatttataat tcataacact ttctttttaa gaatttccat aagttcatca
    18121 gtttttataa gttcttttat caaaccttct ctttggataa gctctatttc attcttttct
    18181 aatcctttac caacaactaa cgcataagga aagcccataa gttcaaaatc attcatttta
    18241 accccaaaac gctcatttct atcatcaagc aatacctcta atccaagatt agttaaatcc
    18301 tcataaagct tattggcaaa ttctaaagcc ttttcatctt tgagatttga aacaataatt
    18361 tcaagcacaa aaggagctaa agttttattc caaatacatc ctttttcatc atgacttgct
    18421 tcagtagcta cagccaacaa gcgtgaaaca cctatgccat aacatcccat gtaaaaaggc
    18481 tgacttttgc cattttcatc taagaaattt gcattcatcg ctttggaata tttttgtcct
    18541 agcttaaaaa tatgccctac ttctatacct ttactttgtt ttaattttgc tccacattta
    18601 acacagcaat ccccttcttt aacttcaatc aaatctttaa aacgatcttt atttaaattt
    18661 acaacatcaa taccgattaa atgataatct ttttcattcg cacctataat catttgcttt
    18721 tcgttttcaa gctcaaaatc tatataaaaa tctatatctt ttaatcccac aaaacctata
    18781 aaaccagcta ctaagccagc tttttccaat tcttcttcgc tcgcatcgac tagttcaagg
    18841 gcactgcaag cattttgagc cttaacctct tgcaaatcat cacttcctct tataaaaaac
    18901 acaactaatt tgctttcatt ttcataaata gcttttttta ccactgcttt aatcgtataa
    18961 aaagcattga ttttaaaaaa ttgtgctaaa gaatctatag ttttaatatt tggagtgtga
    19021 aatttacttg cataatttgc ttcaggacgc tcatcttgac aagttttttt agctcttttt
    19081 gcagcttcaa cattagccgc ataatcacaa ttttcacaaa ttaaaatatc atcttcccca
    19141 ttttttgcta aaaccataaa ttccttagag ccacttccac caatagcccc actatcagct
    19201 tcaactgctc taaaatcaag ccccattctt tgtaaaattt gagaataagt tttatacata
    19261 agctcaaact cacgccctaa atcttcttca ttagcatgaa aactatatcc atctttcatt
    19321 agaaattcac gacatcttaa aagcccaaat ctaggccttg cttcatcacg aaatttaagt
    19381 ccaatttgat ataaatgcaa aggaagttgt ttatagcttg tgattttgtt ttttaccaaa
    19441 gaaagcatag cttcttcatg tgttggacct aaaacaaatt cattttcttt tctgtcttta
    19501 aaacgcaaaa gttcttttcc aaaaacattg taacgcccac tttcttgcca caaacttgca
    19561 ggagtgataa aactaagatt tacttcttgt gctccagcct tatccatttc ttctttaact
    19621 atatttttaa tcttgtctaa aactcttttt cccaaaggca agaaattata aagtccgcta
    19681 ccaatttgtt ctacaaaacc cgcacgcgtt aaaaaaatat gactaggtaa actcgcatct
    19741 tttggcgctt cttttaaact tggtgcataa aatttagtaa atctcatcat tattctccat
    19801 atcaaattca catttatatt gatttaaacc ttcaagatta ttttgcaaat caaaaacata
    19861 acgcatagca ttaatcactg tatcgctttg cattttacct tgtaaatgtt tcaaatttac
    19921 agtaggcgtg tgtaaaaaag ccttaaaaac ttgatgaatc aactttctag cctcttcttt
    19981 atcagatttt ttcaaatatc ctttttttaa cgcaatttca agttgtttat ctgcatattc
    20041 tttagcttgc aagcgtatag ctttgataat aggcatcaaa gccaaatcgt ttaaatacct
    20101 aaaaaattca cttgtttcac gacctattat cccataagcc atacgagctt cttgttctct
    20161 tagtgctaaa tttttttgaa ccacaatttc aagatcatct acagcaaaaa cagatatatt
    20221 ttcattttca ttgatatcaa tatcccttgg aactgcaata tcaaaaaaat accttttata
    20281 agaaagttct tctattaaag aatttgtaat aatagcattt ggtgcattgg tagctgagaa
    20341 aaaaaactcg tattgattta aatatttttt taaattttct aaactatcat attcgcttaa
    20401 aacaccaagt ctctcacaca aatctttagc tttttgtaaa tcacgattta aaataatcac
    20461 cttagcaccc gcagcaatta aatgttttgc cgcaagttct cccatctctc cagctccaat
    20521 aacaacagct tttttttgcg ttaaatctgc aagttctttt gcttttgcca cggcaacgct
    20581 agctacagaa atagaatttt tagaaatttg agtttcattg cgtaccttag cagcacattt
    20641 aaaagcacta tgtactgctc ttgaaaggtg tactccacaa aaattatttt ttacagcaaa
    20701 agcaaaggca tcttttaatt gtcctgctat ctgagtttct ccaaccacca aactatccaa
    20761 agaacttgct acagaaaaaa gatggtggat tgctccacta tcttcaaaaa tatcagcttt
    20821 ttcaagtaaa atatctttat caacatcaca aagtaaagcc aaagatttaa caataaactc
    20881 cgcacaggcc atttttacaa aagcaacaat ttcaacacga ttgcaagtgc ttataaccaa
    20941 acattcttca atattttcat gagtgctaat gatttttaaa aactcacttt ttttagcttc
    21001 attggaaaag cttaactttt cccttaaggc aatatctgta tttttatgag taaaagatat
    21061 acaataatac attaaaattc cctatctatc atagctttaa taatatcatt aagcttgtta
    21121 ttatcatatt tttcaattgc ttttctagcc ttttttgcat aagttttagc ttctaaaata
    21181 gctttttcta aagctttttg ttcttcaaat ttagttttta gccattcttt ttcattttca
    21241 tttaaatctt ttttaaataa agtctgcaaa tatatcctat cttgttcttg taaattttca
    21301 taaagataaa tataaggcaa ggtagtttta ccctctttaa aatcattcat agcaggtttt
    21361 ccaagaattt tttcatcact cttaatatct aaaatatcat caatcatctg aaaagcaagt
    21421 cctaaatttt taccatattc tgcaaaatct ttttcatata atccagccaa aatagctccg
    21481 catctagcac ttgcttcaat caaaacagct gttttattat agatcatttt caaataagct
    21541 tctttattga tattaaattt ctctcccaaa tcaacatcca taagttcgcc tatagcaagc
    21601 tttacaacag catctgaaat aatacttgca aatctagcat ccattttgct taattcataa
    21661 aaggcttttg aatacaaaat atcgcccaac ataagagcat tttttgtacc aaattcagca
    21721 ttaacagatc ttgctccacg tcttaattca ctctcatcaa taatatcatc atgtaataaa
    21781 ctagcaagat gtatcaattc tatagctgca caaattttaa aagcaatctc actctcatct
    21841 gcgatagcta ataataattt agaacgtaat ttctttcctg attttacatt tgaaagcata
    21901 tttaaaatag gttcatagcc aagttcttct aaaaactgtt ttattaattc atctattttt
    21961 tgcactatct tttccttgtt aattgctatt attattttct ttacttgtta atggttttac
    22021 ctgaggttcg ttaaaattaa tcataggaac aacctgatta ttttgcggtg gattttgtaa
    22081 agcttttttt ctcggatcta aaaattctac cattaagcga gattccttat cttctatata
    22141 aaccgtaaaa gttgccaaac ctttattata accactaaat tctaaaataa gtcttgctct
    22201 atcaatatgt ggattagtat aatcaggtat taaagtttga gttacccaat ctaaatttct
    22261 tcttaaactc atcacaaatt gacgcggata tttgcgaaat ttcgaatgta cgatgatatt
    22321 agtattatca aacaaagtcc aataaaaatc aaaattttgc accttatctt catagcctat
    22381 ttctttaatc tgcacactag ctctctcatc ttttttaagt ataaatttat aagtataatc
    22441 aaaagttggt tcagatgcta aaacattact aaaaataaaa aaaatacaaa ttaaataggg
    22501 gcttatttta aacaatttta gccttcgtgt cctaaaattt ttgcgcccaa ttctatataa
    22561 atatcatttt gcctttcttc tatgaaatca ccattttcta atatgaaatt ttttacatcc
    22621 atttctgtta gaccttgttt ttccaaaagt tccaccatag caatatgatc agcaaaaaat
    22681 tcctcaaaaa ct
//
LOCUS       DAPIWU010000014        22668 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.014, whole genome shotgun sequence.
ACCESSION   DAPIWU010000014 DAPIWU010000000
VERSION     DAPIWU010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22668
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.014"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            28..879
                     /locus_tag="RJ285_000435"
     CDS             28..879
                     /locus_tag="RJ285_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDV7383245.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGVNLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
     gene            876..3142
                     /locus_tag="RJ285_000436"
                     /pseudo
     CDS             876..3142
                     /locus_tag="RJ285_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            3154..3915
                     /locus_tag="RJ285_000437"
     CDS             3154..3915
                     /locus_tag="RJ285_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7383246.1"
                     /translation="MLKKMFLFCFLLLNLNAEVNATDTNLSFDSPKIETEAPKIEFSL
                     SSLYQNADEVVKGVIYILVLFSILAWTVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERMELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            3902..4312
                     /locus_tag="RJ285_000438"
     CDS             3902..4312
                     /locus_tag="RJ285_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HDV7383247.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            4314..5060
                     /locus_tag="RJ285_000439"
     CDS             4314..5060
                     /locus_tag="RJ285_000439"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7383248.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFSLFSFYIQEKSSGVDFKQGAEF
                     TSIMMVSEPPIGELKEVSIDQKKSNSQDKNKKQDERISLNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            5106..6311
                     /locus_tag="RJ285_000440"
     CDS             5106..6311
                     /locus_tag="RJ285_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDV7383249.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            6410..7768
                     /locus_tag="RJ285_000441"
     CDS             6410..7768
                     /locus_tag="RJ285_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDV7383250.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSMLMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(7782..8966)
                     /locus_tag="RJ285_000442"
     CDS             complement(7782..8966)
                     /locus_tag="RJ285_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HDV7383251.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDDGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(8976..9185)
                     /locus_tag="RJ285_000443"
     CDS             complement(8976..9185)
                     /locus_tag="RJ285_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HDV7383252.1"
                     /translation="MAKDTNGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            complement(9178..9897)
                     /locus_tag="RJ285_000444"
     CDS             complement(9178..9897)
                     /locus_tag="RJ285_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDV7383253.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            complement(9969..10535)
                     /gene="purN"
                     /locus_tag="RJ285_000445"
     CDS             complement(9969..10535)
                     /gene="purN"
                     /locus_tag="RJ285_000445"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDV7383254.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDSGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            complement(10526..11896)
                     /locus_tag="RJ285_000446"
     CDS             complement(10526..11896)
                     /locus_tag="RJ285_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HDV7383255.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            complement(11880..12578)
                     /locus_tag="RJ285_000447"
     CDS             complement(11880..12578)
                     /locus_tag="RJ285_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HDV7383256.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            complement(12580..14085)
                     /locus_tag="RJ285_000448"
     CDS             complement(12580..14085)
                     /locus_tag="RJ285_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDV7383257.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIEKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFHFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNINKTHILEALSFRARN"
     gene            complement(14082..14609)
                     /locus_tag="RJ285_000449"
     CDS             complement(14082..14609)
                     /locus_tag="RJ285_000449"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDV7383258.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            complement(14645..15229)
                     /gene="clpP"
                     /locus_tag="RJ285_000450"
     CDS             complement(14645..15229)
                     /gene="clpP"
                     /locus_tag="RJ285_000450"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDV7383259.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            complement(15229..16563)
                     /locus_tag="RJ285_000451"
     CDS             complement(15229..16563)
                     /locus_tag="RJ285_000451"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDV7383260.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            16707..17279
                     /gene="folE"
                     /locus_tag="RJ285_000452"
     CDS             16707..17279
                     /gene="folE"
                     /locus_tag="RJ285_000452"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDV7383261.1"
                     /translation="MQKKFEDCVKTMLEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            17279..18664
                     /gene="fliI"
                     /locus_tag="RJ285_000453"
     CDS             17279..18664
                     /gene="fliI"
                     /locus_tag="RJ285_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HDV7383262.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(18667..20004)
                     /locus_tag="RJ285_000454"
     CDS             complement(18667..20004)
                     /locus_tag="RJ285_000454"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDV7383263.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(20006..20734)
                     /locus_tag="RJ285_000455"
     CDS             complement(20006..20734)
                     /locus_tag="RJ285_000455"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDV7383264.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQARISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(20797..21978)
                     /locus_tag="RJ285_000456"
     CDS             complement(20797..21978)
                     /locus_tag="RJ285_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7383265.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGAKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLDAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            complement(21978..22634)
                     /locus_tag="RJ285_000457"
     CDS             complement(21978..22634)
                     /locus_tag="RJ285_000457"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383266.1"
                     /translation="MKIHFDMINFSQFYTKFVLQNLNYEQFFNNPVQFYELNLFSDSQ
                     QEINFDYLVLDNNKINSFYSKNQVNFNEENSAVNLNIQGKSNEIDLKSLLGQNLNFDK
                     TKFNITINKFFNSNFNISHFIQKNLDLKIQNLILEKNKQNISLQGNLNINNSYQAKLQ
                     VISSDEPDEIFPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN
                     "
BASE COUNT         7599 a         3586 c         3369 g         8114 t
ORIGIN      
        1 taaaccacta agaaagtaac aataataatg aaattttata ctattttaag cattctattt
       61 ataagcttta tgttgagcgc ttgtgctgtt ttgcaaaaat catctccact tcaagaaaat
      121 aaagattttt atatacttga tacgcatact caaaaaaaga tttcttttga agatatgatt
      181 ttagaattgc taaaagcaga tgtgatactg cttggcgaaa aacacgatga ggttaaacat
      241 aagataagtc aagttatgat ttttaatgcc ttagaaggaa atttaagttc tcaaaatata
      301 aactttgatg tagctttaga aatgttagca agcacagagc aaaatcactt agataaagct
      361 tttaaaaata aaaaaaccat taaagccaat gaacttacta atgcattaaa ttgggataag
      421 gtctggaaat ggaaagatta tgagcaattt gtcaatgtgg ttttttattc aaagtcaaaa
      481 atattgggtg taaatctttc acgctcagaa attacaagta tttataatgg ggctcagccc
      541 ttaaagggtt atgtttcaac cacaaatgaa gtaaaaaaac aactttttga cattatatcc
      601 ttaagccata agctaaatcc tgaagaaaat aaagaattac tagataaatt ggtggaaatt
      661 caacaattca aagacaggcg tatggctgat gtattggttc atcatgtaaa taaagtttta
      721 ttgctagctg gaagctatca tacaagtaaa aaaataggaa ttcctttaca tatacaagat
      781 tttaaaagca gtaaaaaaat agttgtagtg aatttaagct atggagaaat agatttaaaa
      841 gacagtgatt atgttttgat ttataagggg gaggaatgaa aaaattaagt ttattttgtg
      901 ctgtaggttt atgttttgct agttttgctt tttctgaaga attagaattt gatagtcttg
      961 aaatttcagg ttcaaaaatc aaaaacgatg aaaaaccttt tgtaacttct ggagcaacaa
     1021 gcacaagaga gggtataggt tcagatacac aaagtataga ttctatagtg cgtagtatac
     1081 ctggaaccta cacaaacaca gatcaagctc aaggtacagt tcaagtaaat attcgtggta
     1141 tgagtggttt tgggcgtgtt aataccatga ttgacggtgt tactcaaact ttttatggta
     1201 gtgcatcaga tgatccagct agatttcatt cacaaacggg aacttcagct tttggagctg
     1261 ttattgatac aaatttctta atcggagttg atgttacaag gggaactttt gaaggagtag
     1321 gtggagcaaa tgccttgatg ggatcagcaa attttaagac cataggtata aatgatattg
     1381 tacatgatgg caatatcttt ggatttttag gacgattttc ttatggaagc aatggaatcg
     1441 gaccaagtta tatgagtgca gtggctggaa agactgaact tgaaaataat ggatatgtgg
     1501 gcgcgctttt tggttatagc gcaaagagaa ttactcaaaa ttacactgta ggcgggggtg
     1561 gcaagatagg tagtagtatg gttgatactg atggagatgg tatagctgat accaatatcg
     1621 ctccttttga tccagatttt ttaacccaaa aaccaaactc tcaacttttt aaactcgaat
     1681 atgtcccaaa ttcttttaca aacactatat tttcttatcg tagatatcaa aacgaacttg
     1741 ccggtagaaa aatacacaat gacaattatc aacttgattt ttggcacaac cctaatgagt
     1801 ggcttaatgt aaatacgctt attgcctaca atcaaggcat acaaacctat ggatcaaaat
     1861 ctacttttgc ggcaaacgat gccatagcta acacaaaggc aaaaaatact gccactactt
     1921 ttgatataag tgatacttta gagggtgaat ggcatggatt taatctaaac acacgctttg
     1981 gagcaaatat tttgcttaat gattataaaa ataccttaaa tacatcaatt caaggagtaa
     2041 attctatacc ttttcagcct cgtggaaaac aaaatctttt tacttattat cttgataata
     2101 gtctaaatta tggtatcttt acacttgata ctaatgtgaa tcttttagat tggaatatca
     2161 aaggacacag acctgcttgc gatgaagtaa attttatgtg ttttccaaaa gcggcgacag
     2221 atatagataa aatggacttc gcctgaatgc ttctgtcatg ctttcagctg ccatacacga
     2281 gctttttaca ccctttgtaa gttttgcgag aacaaataga gcccctaatg tgcaagaaat
     2341 gtttttctca aataacgaag gcaatggtat caatcctttc ttaaaaccag aacaagccaa
     2401 tacttggcaa ataggtttta attcttttaa acatggactt ttaaaagatg atgatcgctt
     2461 tggttttaaa gccgtgtatt atcatacaaa aataaaagat tatatttata atgaacaatt
     2521 ttatcttgaa gatccaagta aaattcctcc aagctcgcaa ttttatatgc acttaaattc
     2581 agctgatgat actatattta agggtgtgga gttagaatta agctatgact tgggttttgc
     2641 ttatgctaaa gctatgtatt caagacaaga tacaagttcg actatttctc aaacttcagg
     2701 acctcttctt ggctcttttt cggcaagtaa aatcatggag cttccaaaag attatgcaaa
     2761 tgtagagctt ggctttagac taaatgacaa aataagcttt ggtggtatag caaaatacac
     2821 aggcaaagca aaaagggtaa atccaaatac agatgattgg aataaggatc caaacaatcc
     2881 ttattatcct aaaccaacca cacaagactt accaaaaatt cctattatag tagatttata
     2941 ttggaatata gaatggttta aaaacctcac aatgagagca gaggtgcaaa atttatttga
     3001 taaaaactac atggatgcct taaatgctta taattcctta gataatcagc ttcaatataa
     3061 tggagcaggt gatcctatct atctttttag caattctgct cgcggtcgta cttttatagt
     3121 aagttttgaa tataaatatt aaggaatata caaatgttaa aaaaaatgtt tttattttgt
     3181 tttttattgt taaatttaaa tgcagaagta aatgcaacag atacaaattt atcttttgat
     3241 tctcccaaga tagaaaccga agcacctaaa atagagtttt ctctttctag tctttatcaa
     3301 aatgctgatg aggtggtaaa aggtgttatt tatatattgg ttttattttc cattttagca
     3361 tggacagttt ttatttctaa gcttatgcaa ttttatttta tgaagaaaaa tctagacttg
     3421 tctatacaaa agataaaaga attaaaaaat ctcaatgaat tagatcagac aaaggatttt
     3481 gcaggtgttt tatctttaga aattcaagat gagcttgaaa aaagtgaata taaaaatgat
     3541 catataaaag agcgcatgga attgcgtttg caaaatacca tctcaaagca aatcacagca
     3601 agtaaaaatg gcttgagctt gcttgcgagt ataggtgcta gcgcaccttt tatagggctt
     3661 tttggaacag tttggggaat tatgaatgct tttataggta tagcaaatct tggcaatgct
     3721 tctttggcag tcgttgcgcc tggtatagct gaagccttgt ttgctacagc ttttggcttg
     3781 atagctgcta tccctgcggt gcttttttat aattatctta caagaaaaaa tttaaaactt
     3841 atgcaccatt tagatgagct tgcaaatttt gtctatatac tttttcatag gagttatttt
     3901 aatgataaaa actgaaatgg ctcacaaaga agaggagtta agtgagatca atataactcc
     3961 ttttatagat attatgcttg tattattgat tgtttttatg gctgttactc ctcttatcac
     4021 aagttctatc aaaatagaat tacccaagag ttcgcagcaa gcagaggata agcttaaaaa
     4081 tcccatcata ctttatttaa atactgataa tactttggct attaatgatg ataaattaag
     4141 cctagaaaat ctttcaagtg ctttagatat aaaaaccaaa ggcaataaag aagaaattat
     4201 ttattttcat atcgataaaa gtgtaaagta tgaagatatt atgcaagtaa tgcaaaaatt
     4261 aaaagagaat ggctatggaa aaatagctct ttcaagtaaa aagatggatt agtatgaagt
     4321 ctagtgtgat ttttgggttt gtgttaagtt tgatattgca tactttagta ttaatgtttt
     4381 cccttttttc tttttatatt caagaaaaat caagtggtgt tgattttaaa caaggagcgg
     4441 aatttacttc cattatgatg gtatcagagc ctcctatcgg ggaattaaaa gaagtttcga
     4501 ttgatcaaaa aaagagtaat tctcaagata aaaacaaaaa acaagacgaa agaataagtc
     4561 ttaattctca agataaaaat gctgtattaa aagttcaaaa aaagattgaa aagcaagatg
     4621 aaaaccaagc tcaaaaagaa atagctaatg caagtgaaaa ttcaaaattt aaaaatgaat
     4681 cgctcagtgc tccgctacaa agtaatgaag ataaaacaca aactatagta agtggcaatg
     4741 ccaaagaaca agttaaaagc tatcaagctt tgcttatggc tcatttgact aaatttaaaa
     4801 aatatcctca agaagcgata atgcaaaaac aagaaggcgt tgtaagaatt cgcgtaagca
     4861 ttgatgaaag cggaaatgtc ttaagcaaag agcttaaaaa atcttgccct tatgcagcgc
     4921 ttaatgatga agctttaagt ttatttaaaa gagcttctcc attgccaaaa ccgcctaaag
     4981 aaatgttaaa aaatggtgat aaaatcagtt ttgttatgcc tattgattac aatattaaag
     5041 actatttagg taaaaaataa acttttcatt aaaaaaagtt tattagaatt tttattttaa
     5101 aggtgatgat tatgttctct tcgtttttta aaagtaaaaa atgggcttta tgggcttatt
     5161 tgggactttt tttactgtta tttttcttat atatacaaac aagcttaaat gttgcgatca
     5221 attcatggta tagtgatttt tacaatgttt tacaaaagcc aaaaatagaa cttttggatt
     5281 ctaattctac gcaaaaaata gaagaaaatc ttgaaaataa tgccacttta atccaagagg
     5341 ctaatcaaag agctgagcaa aatttccaaa aagctaattt tatcaataaa ggcgcattgt
     5401 attattatca aaatttatta gaatattttt tcaactctag ggctatgatt gaaaagccaa
     5461 attattcagc aagtgatttt tatgctttga ttttagtttt tttggctatt gctattcctt
     5521 atgttttaat cgctacaatt aatatctatt ttgctagcgt ctatgctttt aagtggcgtg
     5581 aggctatgac tttttcttat ttaaaatttt ggaaaaataa agatgataat atagaaggaa
     5641 gttcgcaaag aattcaagaa gatacttata atttttctaa aatcgtagag agtttaggac
     5701 ttagttttat aaaagctttg atgacccttg tagcatttat tccgatttta tggagtttaa
     5761 gtgatgttgt gagtaaagct ttatttgcaa atttaagcga aaattctttt ttttattttt
     5821 taaaaaacat tgatggtttg cttgtttata ttgcactttt gatttcttta ggaggcttgg
     5881 ttgtgtcatg gtttgtaggt attaagcttc ctggacttga atataacaat caaaaagctg
     5941 aagcagcttt tagaaaagag cttgtttatg ctgaggataa tcgcaaagaa tacgctaaaa
     6001 atgagactat gatagagctt tttacagggc ttaaatttaa ctataaaaga ctttttttac
     6061 attatggata ttttaatatt tggctcattt tatttgagca aatgatagtt atagtgccat
     6121 ttttaatcat ggcaccaggg ctttttgctg gagctatagg acttggtatt gtaatgcaga
     6181 ttaataatgc atttgatcaa gtgcgaagct cttttagtgt ttttatcaca aactggacaa
     6241 ctatcactca acttagaagt atatataagc gtttaaaaga atttgagaaa aatatttctt
     6301 ataagtctta gttttttctt ataaaatgca agaaaaaatt caaatattaa atttactttt
     6361 aattgtgtat aataaggttt aataatattt tatttcttaa ggagcttcat tggaccccag
     6421 tcaggttttg gatttaaacc aaacttctac agcatctttt gatgcaggat attctatgct
     6481 tatggttgtt gttgcacttg ctctagtgtt tttaaatggt ttttttgttt tgtctgaatt
     6541 tagtattgtt aaagtacgtc gttccaagct tgaagagatg gtaaaagaaa aaaaagctgg
     6601 tgccaagaaa gctttggagg ttacttcaag gcttgatacg tatcttagtg cttgtcaatt
     6661 aggaattact ttaagttctc tagctcttgg ttggataggt gagcctgcta ttgcaaaaat
     6721 gctagaaatt ccgcttatta atcttggttt tagcactgtt attatccata ctatagcttt
     6781 cattattgct tttagcatta ttactctttt acatgtggtt ttaggagaac ttgtgccaaa
     6841 aagtatagct attgcagttg cagataaagc ggttttattt atagctagac cgcttcattg
     6901 gttttggatg ctctttttgc cttgtattaa aattttcgat tttttagcag ctataagttt
     6961 gaaacttttt ggaataaaac ctgctaaaga aagcgagcta actcatagcg aagaagaaat
     7021 taaaatcata gcaagtgaga gtcaaaaagg tggagtttta gatgaatttg aaacagagat
     7081 catacgcaat gctgttgatt tttcagatac tgttgctaaa gagattatga ctcctagaaa
     7141 agatatgatt tgtctaaata aacaaaaaag ttacgaagaa aatatgcaaa tcatttgtga
     7201 gcataaacat actcgctttc cttatattga tggttctaaa gatactattt taggtatgat
     7261 acacatacga gatataatac aaaatgaatt aaaccataaa agtcaaaatt tagatacttt
     7321 tgttaaacct ttgattttgg ttcctgaaaa tatcagcatt tcaaaagtac ttgtaatgat
     7381 gaataaagaa cgctctcata ctgcattagt agttgatgag tatggtggaa ctgctggaat
     7441 tttaaccatg gaagatatta tggaagaaat tattggcgaa attaaaagcg agcatgaaga
     7501 agacagctat aaaaaacttg ctgaaaatat ctatgaattt caaggacgat gcgatataga
     7561 aactgttgaa gaaatgcttg taataaacta tgatgaggat ttagaacaag ttactatagg
     7621 tggttatgta tttaatcttt taggacgctt gcctatggta ggagatcgca ttgaagatga
     7681 actttgttac tatgaagtta aaaaaatgga tgggaattct atagagcgtg ttaaggtggt
     7741 taaaaaaaca aataaagatg aagaataagc ctctttaggc tttatttctt tttgtaaatt
     7801 tggtttttaa tttctataca ctcaaaacct ttttcatcta gtgtaactac gcgtaaatat
     7861 ccatcatcat ctattttacc ctcgcataaa aatactcttt tggctatttt cataggaagt
     7921 ttttctttat ttctgtgtcc aaagatttga taaagattgt ccgaggtgaa attacaaaat
     7981 tgatttgcta ctttttgact gtcttcatat ccacctacac cataaataaa gtcatggctt
     8041 ggtataaaac ttattttttc aggtttggag ggtataaaat ttactcctcc atgtgaacaa
     8101 aatatgaatt tattttggaa tttgtagtat aaacattctt ttagatgagg atagagtttt
     8161 ctagcatctc ttggagtaag tttttctttt ctaaaatcct ttaaagtatt ttcattaaat
     8221 tctttggaat ttgacaattc tccattagcc cattttataa gatgtctttc gtgatttcct
     8281 tctaataagc atacgttttc tttttcgcaa atttttaaaa gaaattttat tactttgcca
     8341 ttttctatac ctctgttgat ataatctccc aaaaatatat aaaattcatc ttctttgatt
     8401 gttttaatgt attcttttaa aacactatag caaccttgta aatctcctat atgatgaatt
     8461 tttttgtatt tgcttaaatt tggcatttgg taaagacatt ttttccagtc tcttgagtct
     8521 aaaattgggt atttttttgg attttttttg agcaaatctt gagttttttc caaaagagca
     8581 taaggaatga tatatccatt ttttttagct tctaaaagat ttttttcttg acattgtttt
     8641 aaagagctat caaaaacaat aacatatatt ttatagcgat attgtttagc taagtcttta
     8701 taaattttta atgtttcgtt gtaagcgttt atgatgctaa actcaccttt ttgcatacgc
     8761 atttctagaa gtttgagtaa aattttactc aaatcttcat catttttaac atttaaaatt
     8821 ttatattcac tgactatatt tttaacgctt cctgataaaa gacgcaaagc atttaaatca
     8881 agtgtataat tttgaagttt attatttttg ataaattctt cttgtcctgc gtaataattc
     8941 cctcttaaaa caagtaagat tcgcacattc tttgcctaga ttttctttaa aaattcagtt
     9001 tttaaaacaa taacgccaaa tttatctact ctagcctcaa tttcaccttc tttagaagtg
     9061 agcttaatat tttttatagt agttccacgt tttaaagttg tacttgcacc tttaacctta
     9121 agatctttta ttacactcac gctatcacct gtgttaagtt ctattccatt agtgtcttta
     9181 gccatttttt tcctttcttt gatctaaaat atttaaaatt tgcaccacta aagcaaaagc
     9241 catagcggta taaatatatg ccttatcaat atgaatatca aaactttcag caactaaaac
     9301 tacgcctatt agcaccaaaa aagctaaggc taaaatttta atgcttggat atttttcaac
     9361 aaaatctgct ataggtttag aagcaaaaag catcacagct actgcgataa taacagcgat
     9421 aatcatgatg gttacatctt gagcaattcc tactgcggta ataacactat caagcgaaaa
     9481 cactatgtca atcacagcaa tttcagctac aactatccaa agtttattgc ttgctttaaa
     9541 atgactttga ctttcttctt gatgagaaat ttgctcttta atttctttaa tagactttac
     9601 aatcaagaaa agcccaccta gtaaaagaac tagatctctt cctgaaattt cattgcccaa
     9661 tacactaaac aaaggtgtta caagtttcat tacccaaaaa agagataaaa gaagtaaaat
     9721 tcttgtaatc attgcaaaag ctaaacctaa gatacgtcct ttatcacgat gttcaggggg
     9781 tagtttgctt actaaaatag ctaaaaaaat gatattatct atccctagta caatttcaag
     9841 agcacttaaa gtagctaaag taatccaagc atcaatacta aatatccatt caaacataaa
     9901 tttccttgaa aattttaaaa ttttttaaag cgatatttta tagttttaaa gcaaatacct
     9961 ttaattcttt aagaaaaaat ttcaatcaca cttaagggta aaatttcatg ttctagacta
    10021 tgaatttttt cttcaaattc ttcaaaactc aaatttcttt tttcaaaagc tttttgagct
    10081 ataatcattc cactatcaag ttcttcactg acccaatgca cactgactcc agccactttc
    10141 atatcacttt cataactttc tttaatcgca tgtgctcctt taaaaagggg taataaagaa
    10201 ggatgaaggt taattgcctt aatatttttt gtaaaaacag gacttaaaat tctcataaaa
    10261 cctgctaata cagtaagatt tgctccactt tctttgattt tttgtaccaa aatcgtatca
    10321 aattcttcac gagtattata agccttatga tcaacaatga cagtatcaag accaaatttt
    10381 tttgctcttt gtacaccaaa agcatctttt ttattacaaa tgcaaagtac tacttcatag
    10441 gtattttccc ctatggtttt tttatgaagt ttttctaaaa tattttctaa attacttcca
    10501 tttccactaa aaagtacagc taattttaca agcattttaa tcctttgata agttttaaag
    10561 cgtcaaagct atttttatta aatttatatt tttttgcaac aagtccatga gctaaagtag
    10621 cattttttgc tgcttctaaa gcactaaaac caaaacctaa atgtgcagca atcattccac
    10681 ttaaaacatc tccactccca cctttagcta aggcttgatt tcctaaattt acaacaaata
    10741 atttttcttt ttgcacaata ataggatttg ctccttttaa aacaagaaca caatcataat
    10801 tttgtgaaaa ttttctagca tagaaaaagc gatttttttg caatgtttct atatctaaat
    10861 tctcatcaaa gcacatttta taaagtttta taaattcttt tggatgaggg gttataacaa
    10921 catcttttct gtttaaatac caaagcaaag cttcacttaa aaagcagttt gcatccaaga
    10981 tcaaaggagt gttttgcaaa atttcatctt ttagaaaatc caaattttca agccccatac
    11041 ctaaagcaat agcacttgca ttattttcaa ttttttcttt taacatcaaa agaggcgaga
    11101 aacttttttg tgctactaaa gaaacaagac ctgctccaaa atttaaggct ccaagtcctg
    11161 ctaaagttcc agcacttgca ttggcaacta tataaatatg gccaaaattt cctttattgg
    11221 cgttgatttt tctatctata gtttttaaat cttttttttc aagcaaaaaa gcttgagaat
    11281 tagggtaaaa tttcttagat ctaatgccta aattggctat tttaatcctt cctacaaatt
    11341 ccttagcaaa atcttcaagt aaaatttcct ttaaagctcc catacaaaat gtaatatcag
    11401 ctttaaaaca aggataaaat cccaaatttg taggtatatc acaagctatt tttaaagcct
    11461 tactttgatt aactttttga ataattaaac ttgttttttc atctaaacaa cgatttgaac
    11521 ctgtacctaa aatacaatca atgataatat gaaatttttt aaaattgggt tcttttttac
    11581 aaaatttaaa agcataattt tgtaaaattt gctcttgttt tttaaaaagc gtattttctt
    11641 taaagcctat tttataagct ttagcgtgtt ttaaatttct taaagccacc aagccatctg
    11701 aagcgttgtt acccccgcct aataaaaaaa gtatttttac ttttctaatc ttgcgttgaa
    11761 tgcgaatttt tttagcttct tttttaatca gtttagctaa atttaatccc gcattttcca
    11821 ttaaaataag ttcatctaag cctttattta tagcattttg ttctaaaatt tttatattat
    11881 caataatagc tttcataatc ttttttcacc aaaaaatata tatttttttc tctttcttct
    11941 tcaaattttt tcattttggg taaaaatttc tggatcaaag cacgaaaatt cttaaaacca
    12001 taattttgcg gatgaaaatc cgagtatttg cggttcatat tagtacggat ttgtgcgtat
    12061 tcggcacgcc ctttttcatc gataagttgt tcggtgatat tgattaaagc tcttaaataa
    12121 tccttactta aaatatcttc ttttttactc tcatctttat ctaaataaaa aaattcacta
    12181 aaagcattta cataggattt tatagatttt tcaagcccca ttcctataac ttgtttttta
    12241 ttttccctta atttttgaat gagtgaagta taatcactat cgcttgaaac aataacaaaa
    12301 atatctatgt ttttttcata aaatatggac atgatttcag tgattaaata catatcgctt
    12361 gagtttttgt tggctgcaaa attaaattgt tgcatagcga ttaaagaata ttcagcaatt
    12421 tgctctctcc aaccttgtat atttttttga gtccagtctc cataaatgcg tttaataata
    12481 acctctccgt aatctgaagc aatatcaaaa atacttttag cgtattttgc agggatattt
    12541 tctgcatcta taaagatagc tatactttta ttttccattt taattccttg ctctaaagct
    12601 taaagcttct aaaatatggg ttttgttaat attaagactt tgttctaaat ccgctatact
    12661 tcttgaaact tttaaaattt tattaagcga tcgcaaagaa agattataac gtgaaattgc
    12721 taaatctagc gtatctttgg catctttttc caatacacaa aaacgactta aatcttcatc
    12781 ttttaatttc ccattaaatt ctttttgccc ccgtttttta ctaaaaataa aagcttgtaa
    12841 aattttttca ctcatttctt tagaacttat actcgtttta tcatccttgc tgatctcatc
    12901 catagctaca taaagatcaa tcctatccat aataggagct gaaatgtgat ttttgtattt
    12961 tttaatctca ttttcactac aaacacaaga aagattttta gaaaataaat ttccacaagg
    13021 acaaggattt tgggcagcta taaagctaaa ttttgtttca taagtgattt tagaatttac
    13081 tcttgaaata tgaattttat gatcctctaa aggctctctt aaactctcta tgatttgctt
    13141 attaaaatgt ggaaattcat caaaaaataa tactccacca tttgcaagtg cgacttctcc
    13201 aattctagca ttttttgttc ctccgccaaa aatacttgct cttgtagaag tatgatgagg
    13261 atgacgaaaa gcacgaattt tagtaaattc acaatctttt gaatctaaag acatataagc
    13321 attttgcatt aaaatttcac ttaaactttg aggaggcatg atataaacaa ggcgtttagc
    13381 acacatactt ttaccacttc ctggacttcc ttcaaataag atattatgca tacctaaagc
    13441 agctatcata caagctcttt tagctttttc ctgccctttg atatctttaa aatcaagttt
    13501 aaaatccata ttttgtaaaa aaatttcatt ttctatttgt aaaggacttg cgaataaagg
    13561 atgattgtga gaaaaatgaa aattttcata atttttttct ttaaaaaact ctattgcttc
    13621 atttaaattt tcaagtccat aaacctctaa atttggtatc atggaagctt tttgtgctat
    13681 actttttgga acaacgattt tagctttttc aattttagca gagagaaaca aaagcaaaga
    13741 aaaaagctca tttgtgcttt taatacttcc atcaagtcct aattctccta ctacaaaaaa
    13801 gtcatctaat tcttcatttt gcaaaaggat taataaagcg atagccaaat caaaatgtga
    13861 tccctttttt gggatgcctg aaggactaag attgatagtg atttttttag caggaaaagc
    13921 aaaatcacaa cttaaaagtg tggctttgat gcgttcgaca ctttccttaa tcgctgtact
    13981 tgcaagccct actatgctta aatttggcaa acctcttgta aaagtggatt ctacctctat
    14041 aatgtctaag ccttcatgaa agcttatgca ctttagtttt ttcatttctc ttttttatga
    14101 tttttcttct ttttcttaaa ttctttatcg aatttttgac gcttagcaaa ggaaattttt
    14161 tctataaata aatgtccatt taaatgatca ttttcgtgtt gaatagccac agctaaaaaa
    14221 ccttttgctt caagttcttt aaattctcca aagcgatctt gatatttaag caagatatga
    14281 ttatagcgtt tcacttcttc aaaaaaatct ggcacactca aacacccttc tgtgcaagtg
    14341 atcatttctt catctaaagg aataatttca ggattgataa tctctagcaa atcttctttt
    14401 ttttgttcat cgttttcatc aaaaatattt acaagtaaaa cacgcaaagg aatatccact
    14461 tgaatagctg ctaaacctac tccattactt gctatcatag tttcatacat atcatcaagc
    14521 aaggtgtgaa gttctgtatc aaatttattt acaatttcag agtttaaaaa aagtctagga
    14581 ttgggatagg tgataatttt tctaaccatt aaaaaacctt tgttttaaat gatctccaaa
    14641 gaaatcattt aaaacttttt tccaaaacct tatcaatcag cccatattct ttagcttctt
    14701 gtgctgacat gaaaaaatct ctttctgtat cttttgctat ttttgcaact ttttgcttag
    14761 tattttttgc caaaatatca ttaagtatag ttttgagtct taaaatttct ttggcttgaa
    14821 tttcaatatc tgtggcttga cctctagctc cacctaaagg ttgatgaatc ataatgcgtg
    14881 aattaggcaa agcaaaacgt tttccttctg cgccacaact aagcaaaaat gctcccatag
    14941 aagcagcttg tcctatgcaa atcgtacaaa catcaggttt gatatagttc atagtatcat
    15001 aaatactaaa accacttgta attacaccac ctggagaatt gatataaaga taaatatctt
    15061 ttgtaggatc ttcagcttct aaaaaaagaa gttgtgctac gatagaagcg gcaagttcat
    15121 catgaatttc accacttagc ataataattc tatcttttaa aaggcgtgaa taaatgtcat
    15181 aacttctttc accacgacta gatttttcaa taacataagg aataaacatt atttatcttc
    15241 tttctctttt ttgctcactt tttccgattt ttctgttttt ggtataaaaa tatcattaaa
    15301 aagtttttct tcaattaaag ccattttcac agcaggcaaa gctccttgtt ttttatagtt
    15361 ttctaaatgc tcttttggat tcataccata gcgatatgct tcaaaataaa tcgcttgaat
    15421 caattcttga tcatttactt caatcttacg caattttgca agttcatcaa tgataaaagt
    15481 aagttttaca cttttttgtg cttcttcttt aaaagaatca cgtttttctt gatatttttc
    15541 tttacttgct ttaagctctt caatttcttt ttcgctaaaa gtattaaaag ccgcacgcat
    15601 ctgcatatca gtttcttgtt ctactatgcc tttaggtaaa tcaaaattat atttttcaat
    15661 caaagcatct gcaaatttgc cttttaattc atcatttaca agtttgaaaa gtttttcatt
    15721 tttgatttgc tcttttaatt tttcatctaa aacttcaaca ctagcttttt cttctcctgg
    15781 taaaagtttt ttaagcattt catcatcaag ttctggaatt ttaagctctt gaatttcatg
    15841 tagttttact ttaaatactg catctttacc cgctaaatgc gctgcaccgt attctttagg
    15901 gaaagttact ttgatatctt tttcttcacc tattttcatt cccaccatac catcttcaaa
    15961 acctggaata aattgcttag aaccaatttc taaaacataa ttttcagctt taccaccttc
    16021 aaaagcttta tcatctacaa aaccttcaaa atcaaatttt gcaaaatcac cttcttttaa
    16081 agctcttttt gtttttatag cttcaggagt agcaaaacgc tttaaaagct catctttttt
    16141 ctcatcaatt tcttttttac ttacttttgg agtttgatat tcagggatga gtttttcata
    16201 accctcaagt ttgatttcag gtttaaaaga aagtattaat tcagcaataa tttctccatc
    16261 tttacgatca aatttttcaa aatatggctc acctacaagc tctttatttt cttttttaag
    16321 ttcttgtaaa gcgctattta cagcggattt aaaaagattt tgttctgcat cttgagtgag
    16381 ctctctttca tatcttttaa gtacggcact tacaggaact tttcctggtc taaacccatc
    16441 catttttaca cttttagaag ctttttttgc taaattttct acttcacttt tgatcattcc
    16501 tgaaggaatt tttacactag cagtcgcatt aacagaatct agttgctttg cctttacttc
    16561 catagttttt ttccttataa aataaaattt gccttcaatg atagcaaatt tttccttatt
    16621 acttgcataa aattttaaag taatttatga taaaattgca atattacatt attattaaaa
    16681 tataaaaaat atttttggag aaaaatttgc aaaaaaaatt tgaagattgt gttaaaacca
    16741 tgcttgaaat tataggagaa aatccaaatc gtgaagggct tattaaaacg ccaaatcgtg
    16801 tttttaaagc ttatgaattt cttactagtg gttatacgca aaatgtcaaa gaaattttaa
    16861 atgacgcttt atttgaaagt tctaataatg aaatggtttt agtgcgtgat atagaatttt
    16921 acagtctttg cgaacatcat cttttgcctt tttttgggcg tgctcatgta gcctatatcc
    16981 ctaataaaaa agtagtaggt ttaagcaaaa ttccacgcct tgtagaagtg tttgcaagaa
    17041 gacttcaaat tcaagaacaa cttactgaac aaatcgcaca agctttaatg gaaaatgtcg
    17101 atgcaaaagg tgtgggtgta gtcatagaag caagacatat gtgtgttgaa atgcgtggag
    17161 tgcaaaaagc taattccacc actacaactt cagctttacg tggaattttc ttaaaaaatg
    17221 aaaaaaccag agaggaattt ttttctctca taaactctgc taaacaggta agattttaat
    17281 gaatcttgaa aaactacgct ccaaacttgg caaagaaaat ttaagtgcta tttttggaga
    17341 gattacaaaa atttctgcta caagtataga aattcgtggg cttaaaacag gggttggaga
    17401 tatagtgaag ttagtttcta atgaaaatga aaatttaaac actctagcta tggttgtaga
    17461 aatcaaagaa caatttagct atttaagccc attttctttt atagaaggtt ttaaaatagg
    17521 cgatcgtgct tttataagtg atgcaggtat gcaaataggc gttagcgatg aacttttagg
    17581 cagggtagta gatcctttta tgcgtccaaa agatggtaaa ggagctatag aagcaaccaa
    17641 atatatgcct ataatgcgtg cacctattga tgccatgaaa agagggctta tagaagaagt
    17701 ttttcccgtg ggtgttaaaa ccatagacgc gcttttaact tgtggtgtag gacaaaaact
    17761 tggtattttt gcaggaagtg gggtaggaaa atccactctt atgggaatga tagttaaaaa
    17821 ttccaaagct cctataaaag tagtggcact cataggagaa agggggcgtg aaattcctga
    17881 atttatacaa aaaaatttag gcggaaagct cgatgataca gtgattattg ttgctacaag
    17941 tgatgatagt gctttgatgc gtaaatacgg tgctttttgc gcaatgagtg tggcagaata
    18001 ctttaaagaa cagggcaaag atgtactttt tatcatggat agtgtaacgc gttttgctat
    18061 ggcacaaaga gaaattggac tagctcttgg agagcctcct acaaccaaag gttatccacc
    18121 aagtgtttta agtcttttgc ctcaactcat ggaaagaacc ggtaaagaag aaggtaaagg
    18181 cactataaca gcctttttta ccgttttagt ggatggtgat gatatgagcg atccaatcgc
    18241 cgatcaaagt cgttctatct tagatggaca cattgtttta agccgtgaat taacagactt
    18301 tggaatttat cctcctatta atatacaaaa ctctgcttca agggtgatga gtgacattat
    18361 aagtcctgaa cataaacttt gggcaagaaa atttaagcgt ttaaactcgc ttttaaaaga
    18421 aaatgaagta ttgcttcgca tcggtgctta tcagaaagga agtgataaag aacttgatga
    18481 agctatttct aaaaaagaat ttatgcaaaa attcttagga caaaatcctg aagaaagctt
    18541 cgaatttaat caaactttag agcttttaag tcaaattgat acaccaaata ctcctttgcc
    18601 accaactcaa aatataaatg taggaagtgc aagtgcaact ttgcctaatc ctaatttaaa
    18661 ataaaattat ttaataaaat aatctccatc aaaactgatt aaagaatatt tcctttcatc
    18721 gcctatgctt tgagttagct cttctatgct taaaaaactt agcgtatcag cttctacata
    18781 ttcacgcact tcttcagcat ttttatttgc actgataagt tcttcaaaag ttggagtatc
    18841 tatgccataa gtatcaggaa atttgatctc aggacaagct atggcaagat ggattttgct
    18901 cgctcctgca gcacgaagca aagaaattat ttttttagaa gtagtgccac gcaccaagct
    18961 atcatcaatg actacgattt ctttgccttc taaaacttta cgcataggat taagttttaa
    19021 ttttactttt aaatttctaa gctcttgagt tggctctata aaagttcttc ctacataatg
    19081 atttcttact attgccattt caagagggat ttgtaaatat tgcgcaaaac ctatagctgc
    19141 acttactcca ctatctggca caggcacgac aaagtctgct ttataagcaa attttttagc
    19201 taaagcttcg cccatttttt tacgcacttc atacacgctt ttgccttcta ctatactatc
    19261 aggtctagca aaataaatgt attcaaaagc gcaaattcta ggagtttgag aaaaaagttc
    19321 tatgctttca aatttatcat ttccctgagt aaaaataagc atttcccctg gtttaacatc
    19381 acgaataaat tcagcctcta taagatcaaa agcacaagtt tcactagcaa ctatatagcc
    19441 tccatctttt aaacgcccta aagacaaagg acgcacccca tgaggatctc ttacaacata
    19501 aagtttatct ttgcttgcta aaacaaaaca ataagctcct atacattctt ttaaactctc
    19561 aataaatcta tcttttagac tttcttgctt acttcttgcg ataagatgga caacattttc
    19621 tgtatccata ttggtttgaa aaatagcccc atcttgaata agtcttgatc ttacctcttc
    19681 tttattgact aaatttccat tatgcgctaa agcaatatca cctaaaaccg aagtagctgc
    19741 tatgggctga gcgtcattta aacttgaatt tcctgctgta gaatagcgat tatgccctat
    19801 agcgatttca ccttctaaag tttttagatt atcaggatta aaaatttgac tcacttcacc
    19861 tttagcttta atagtcttaa tatttttacc attactcaca ctaatgccac ttgcttcttg
    19921 cccacggtgt tgcatagcaa aaagcgcata atacgcataa gtgctagcat tttttgaatt
    19981 gataactcct acaactgcac acattttaaa ttcctaaaaa atcattgatt gaatacattt
    20041 ttgcttcttg cttgctaagc caaatagcga ttttaatcgc acctttagca aaagtcgccc
    20101 ttgaagtagc ggtatgatta agttctaaaa actcaccatc ttcgtaaaaa cctaccgtat
    20161 ggcgtcctac tatatcgcca ccccttaaac tcatcacggc aatctcatct ttacttcttt
    20221 cacctataat gccatctctt ccacttactc ttactttttc aagttctaaa tttctagctt
    20281 ttgctacact ttgagctaaa gtcatagctg taccacttgg ggcatctttt ttatggcgat
    20341 gatgcatttc taaaatttct atatcaaaat ttcttagcat ttgactggct ttactagcaa
    20401 gatagtttaa aaccgcaaca cctaaagaca tattggtcgc ataaaaaatc ggcatcactt
    20461 cactagcact ttgcatcaaa tgtaaaattt tctcatcaag ccctgttgta cctattacca
    20521 aaggtttagg catagttctt gcataattta aaagctcatg agttccactt ggggaagaaa
    20581 aatcaataat cacatcgctt ttttcaaaaa gctctcctaa atttccaccc ttatcataaa
    20641 gtatcgaaat tcgtgcttgt gtttcgcttt ttaaacattc ttcaatctgt tttcccattc
    20701 gtcctttagc gccataaatt cctattttaa tcatcttttt ccttgaaaat aaaatattga
    20761 ttttagcatt tattttgtaa attttaaata ataaaattaa gctttatggt tttttaattt
    20821 atataaatta tctaacaatt ttgcttcttc tcctaagccc ttgctatgat aaaattttaa
    20881 atttttacta agatattttt gctctaccca gccaccaaaa tcatgtggat aaagatagtt
    20941 ttgtttttct tgatgattgt tgttaagata attaggtatt tctaaagctt cattattttt
    21001 tacatagttt aaagcttcat tgatagcttt gtagcttgca ttggatttga ttgtgcttgc
    21061 taaataaact acgcattggg ctaggataat tcttgcttca ggataaccta tatttttaac
    21121 agcatctaga gtcgaaactg ctaaatttaa agcatttgga tcggcatttc cgacatcttc
    21181 acttgaaaaa atcaccaaac gcctagcgat aaaatccgca ctttctcctg catcaataag
    21241 tcttgcaaga taataaatag ctgcatcaac gtcacttccg cgtaaacttt ttatcattgc
    21301 acttgctaaa atataatgtg tatcttttga gctaacacct tcactattta tggtgttgcg
    21361 aagtttttta agattttcaa gactgatatg tttttcatct aaaaccaaga caaattcaag
    21421 caaatttagc atagctcttg catcagcact tttaagtaga aaatctttag cttctttatc
    21481 aatactaaat ttcatttttt cttgtacacg caagagtaaa gtttcaagtt cctttgcccc
    21541 taaagattta aattcaaaaa gcatggaacg acttcttata ccagaactta aaacaaaata
    21601 gggattttca gtgcttgcac caattaaaat taaacggtaa ttttccatag gaattaaaag
    21661 catttcttgt tgggttttgc taaggcggtg aatttcatca ataaaaatta aaggcttata
    21721 aagactattt ttataattat ctaaaatttt tcttagttct tcgagtttaa aatttcctcc
    21781 atcaaattca taaaaatcta agccaaattc ttttgctaca actctagcaa aagttgtttt
    21841 tccagaacct gctgttccaa aaaaaatact atgaggaagt ttttgtaaag cagtaaattt
    21901 tttgaaaatt tctataagct catattgtcc taaaatatca tcaaaatttt cagggcgaaa
    21961 ggtcaaagct aggctcatta atttaaatcc atatttgaaa attcactacc attaattttt
    22021 agttgaggat tggccaagct atcataagat aaatttagaa aaaagttatt attttctttt
    22081 aaaaaatatt gatttaaacc tccataatcc tttgtccaag gaaaaatttc atcaggctcg
    22141 tctgaactga taacttgtaa ttttgcttga taagagttgt taatatttaa attgccttgt
    22201 aaactgatat tttgtttatt tttttcaagg attaaatttt gtatttttag atcaagattt
    22261 ttttgaataa aatgagagat attgaaattt gaattaaaaa atttgtttat ggttatatta
    22321 aattttgttt tgtcaaaatt caaattctga cccaataaag atttaagatc aatttcattg
    22381 gattttcctt gtatgtttaa gtttactgct gaattttctt cattaaaatt tacttggttt
    22441 ttgctgtaaa aagaattgat tttattgtta tctagcacaa gataatcaaa gttgatctct
    22501 tgttggctat cgctaaataa atttaactca taaaattgta caggattgtt aaaaaattgt
    22561 tcgtaattta aattttgtaa tacaaattta gtataaaatt gagaaaaatt aatcatatca
    22621 aaatgtattt tcatgttttt aatttctaaa tttttattca ttaaaact
//
LOCUS       DAPIWU010000015        21836 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.015, whole genome shotgun sequence.
ACCESSION   DAPIWU010000015 DAPIWU010000000
VERSION     DAPIWU010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21836
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.015"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..373
                     /locus_tag="RJ285_000458"
     CDS             <1..373
                     /locus_tag="RJ285_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HDV7383267.1"
                     /translation="LKAIKYFKKNKKILGICLGHQCIAEIFGGRVSKMQNPMHGKISK
                     LYFKKDPIFKGIKKEIEICLYHSLHISSMSEKCKILAHNSENIIMAIKHKKYPIYGLQ
                     FHPEAVLTQKGKKILKNFMKL"
     gene            complement(360..1232)
                     /locus_tag="RJ285_000459"
     CDS             complement(360..1232)
                     /locus_tag="RJ285_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDV7383268.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYSVDWVCFYRLLSTGLI
                     LIFLSFKAQKILVFTNLKESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAP
                     LIIMLYLCFKNKKFPKLIEIFALILIIFALFLLATKGDIEAVVLNYWGIFWAVIGAFG
                     VAFYSLSAREVILKYGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGI
                     VFIGTIGAFCLYLKGVEYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLI
                     ILSVILNAKKTKVS"
     gene            1328..1756
                     /locus_tag="RJ285_000460"
     CDS             1328..1756
                     /locus_tag="RJ285_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383269.1"
                     /translation="MQINNSLNSLSQYVKVNSNEENQNSKNQEQNALAQDPAVEVNIS
                     KEAKEKSNTSNQNNSQAPAQALNAQNNTQQDSSSNSEDKLTELTQKLAEIQAKIVELT
                     AKMSKANEDQIKSIESQIATLNAQASTIQAQIQELQSQQA"
     gene            1822..3078
                     /gene="murA"
                     /locus_tag="RJ285_000461"
     CDS             1822..3078
                     /gene="murA"
                     /locus_tag="RJ285_000461"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDV7383270.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     TEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGAKITRLEE"
     gene            3075..4235
                     /locus_tag="RJ285_000462"
     CDS             3075..4235
                     /locus_tag="RJ285_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDV7383271.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKGIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(4257..5105)
                     /gene="lepB"
                     /locus_tag="RJ285_000463"
     CDS             complement(4257..5105)
                     /gene="lepB"
                     /locus_tag="RJ285_000463"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDV7383272.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDKFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPAYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(5115..5963)
                     /gene="folD"
                     /locus_tag="RJ285_000464"
     CDS             complement(5115..5963)
                     /gene="folD"
                     /locus_tag="RJ285_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDV7383273.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGAMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            6043..6390
                     /locus_tag="RJ285_000465"
     CDS             6043..6390
                     /locus_tag="RJ285_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383274.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            6387..7661
                     /gene="hemL"
                     /locus_tag="RJ285_000466"
     CDS             6387..7661
                     /gene="hemL"
                     /locus_tag="RJ285_000466"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDV7383275.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLV
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            7658..7987
                     /locus_tag="RJ285_000467"
     CDS             7658..7987
                     /locus_tag="RJ285_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HDV7383276.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            7987..8490
                     /locus_tag="RJ285_000468"
     CDS             7987..8490
                     /locus_tag="RJ285_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383277.1"
                     /translation="MEHKKALFCIFAIIHLFFWIIFSLLNHFKLDIFLSYEIAFFSVL
                     LIIFASYLNYKKVIIKKSKNYEKDFNFISSLFIKKKQNLSKIIHFKVLKDDLKPNVKE
                     KIHFFAMFFTLFKLMAYVILVAGFLFLHRQDKLDIFAYICGISSLLVCVFIFILYIKK
                     YESKKNY"
     gene            8468..9655
                     /locus_tag="RJ285_000469"
     CDS             8468..9655
                     /locus_tag="RJ285_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7383278.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFIGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMTSLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            9648..11744
                     /locus_tag="RJ285_000470"
     CDS             9648..11744
                     /locus_tag="RJ285_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7383279.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQTLK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATTFEKLENTLKNILGNQASKIQDKENILENLLSNKENI
                     KEEKLNHNTKNQDEEKYIKVSKEETLADDAKTNIKQDVKNEENLPKKEVNANLDSSTK
                     THEENIKENPKFYETKTESKTSINTNTNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEF
                     IKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAELKN
                     LEHKLNLSIKDLVQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLL
                     AQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEI
                     LISLNNEKYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDT
                     RNMKNLDLEMGMDKKV"
     gene            11741..12022
                     /locus_tag="RJ285_000471"
     CDS             11741..12022
                     /locus_tag="RJ285_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HDV7383280.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(12019..12819)
                     /locus_tag="RJ285_000472"
     CDS             complement(12019..12819)
                     /locus_tag="RJ285_000472"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDV7383281.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(12816..13940)
                     /locus_tag="RJ285_000473"
     CDS             complement(12816..13940)
                     /locus_tag="RJ285_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDV7383282.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYVSINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            14027..15322
                     /locus_tag="RJ285_000474"
     CDS             14027..15322
                     /locus_tag="RJ285_000474"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDV7383283.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCSEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AITYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            15325..15606
                     /locus_tag="RJ285_000475"
     CDS             15325..15606
                     /locus_tag="RJ285_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDV7383284.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            15603..17228
                     /locus_tag="RJ285_000476"
     CDS             15603..17228
                     /locus_tag="RJ285_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HDV7383285.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLVQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLSKS"
     gene            complement(17125..17610)
                     /locus_tag="RJ285_000477"
     CDS             complement(17125..17610)
                     /locus_tag="RJ285_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383286.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            17706..18197
                     /gene="mobB"
                     /locus_tag="RJ285_000478"
     CDS             17706..18197
                     /gene="mobB"
                     /locus_tag="RJ285_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HDV7383287.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            18199..19041
                     /locus_tag="RJ285_000479"
     CDS             18199..19041
                     /locus_tag="RJ285_000479"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDV7383288.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            19034..19231
                     /locus_tag="RJ285_000480"
     CDS             19034..19231
                     /locus_tag="RJ285_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383289.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            19241..21127
                     /gene="metG"
                     /locus_tag="RJ285_000481"
     CDS             19241..21127
                     /gene="metG"
                     /locus_tag="RJ285_000481"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDV7383290.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDIYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFHNVELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCQKVALALNFEISSTNYAKMILDNKLLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            21131..>21836
                     /locus_tag="RJ285_000482"
     CDS             21131..>21836
                     /locus_tag="RJ285_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383291.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSFAKIISFLKEKNQKIIFDFNKIDDFK
                     IYFIDDKFEITPFGSSS"
BASE COUNT         8262 a         3326 c         3152 g         7096 t
ORIGIN      
        1 cttaaaagca atcaaatatt ttaaaaaaaa taaaaaaatt ttaggtatat gtttaggaca
       61 tcagtgtata gctgaaattt ttggcggtag ggtttctaaa atgcaaaatc ccatgcatgg
      121 taaaatttct aaactttatt ttaaaaaaga tcctattttt aagggtatta aaaaagaaat
      181 tgaaatttgc ttatatcatt ctttacacat tagttccatg tctgaaaaat gcaaaatttt
      241 agctcataat tcagaaaata ttattatggc aattaaacat aaaaaatatc ctatttatgg
      301 attgcaattt caccccgaag cggttttaac tcaaaaaggc aaaaaaatac ttaaaaactt
      361 tatgaaactt tagtcttttt tgcatttaaa ataacactca atataatcaa aacaaaagca
      421 aaaatatcaa gcaagctata acgggttttt aaaaataaaa aactcatcaa agcagctgct
      481 acaggctcta tagaggcaat catactagcc cttagagcac ctatatattc cactcctttt
      541 aaatacaaac aaaaagcccc tatagttccg ataaagacaa tcccgcccat agaaaaaaat
      601 gcttttaagt taaaagcata gtgaattaaa cccttatcaa attgcaagat taataaaaat
      661 acaaaagaag caaaaagact cgcccagccc attatccaaa aaagaccata ttttaatatc
      721 acttctctag cacttaaaga ataaaaagca actccaaaag ctcctataac agcccaaaaa
      781 ataccccaat aatttaaaac caccgcttca atatctcctt tagttgcaag caaaaacaaa
      841 gcaaaaataa tcaaaatcaa agcaaaaatt tctatcaatt taggaaattt tttattttta
      901 aagcacaaat aaagcattat aatcaaaggt gcacaatatt gtatcattgt tgcagttcca
      961 gcatcggtat aataaatagc cttaaaataa ccaaattgtg ttagcaaaag cccaaaaaat
     1021 ccaaacatac aaatacttaa gctttctttt aaatttgtaa aaactaaaat cttttgagct
     1081 ttaaaactta aaaaaatcaa aatcaaccct gtagataaaa gcctataaaa acaaacccaa
     1141 tctacgctat aattattttt aaaaaggtat tcagctaaaa caccgctaat agcccaaaaa
     1201 atacctccca aaagaactaa aaatacgccc attgcaaacc ttaataaaaa ttattttaaa
     1261 ttatagtata ttttttttaa aataatgtcg atttagtgta atatatatta taaattaagg
     1321 agaaaatatg caaattaaca attccttaaa tagcttaagt caatatgtta aagtcaactc
     1381 aaacgaagaa aatcaaaact ctaaaaatca agaacaaaac gctttagcgc aagatccagc
     1441 tgtagaggta aatatcagca aagaagccaa agaaaaatca aatacttcta atcaaaacaa
     1501 ttctcaagct ccagctcaag ctttaaacgc acaaaacaac acgcaacaag atagtagcag
     1561 caatagtgaa gataaactta cagaattaac acaaaagctt gcagaaattc aagcaaaaat
     1621 tgttgaacta actgcgaaaa tgtctaaagc taatgaggat caaatcaaaa gtattgaaag
     1681 tcaaatagca acattaaatg cccaagcttc aactattcaa gctcaaattc aagaactcca
     1741 aagccaacaa gcttgattat attttttcaa aagtttaaga atgctataat gatgcatttt
     1801 taaacttttt caaggaaaaa tatgacttat ctagaaatcg aaggcacaaa tcatctaagc
     1861 ggaaatgtta caataagcgg agcaaaaaat gctgccctac ccttgatcgt ttcaagtata
     1921 cttgctaaaa atgaagtaaa aatcaacaat gttcctaatg ttgctgatat aaaaactctt
     1981 atatctttgc tagaaaattt aggagctaaa gtcaattttc aaaacaatag tgctttatta
     2041 aacacaaaca ctcttaatca aaccatagct aaatatgaca ttgtgcgtaa aatgcgtgct
     2101 tctatactta ctctagggcc tttgcttgct cgttttgggc attgtgaagt atctttgcct
     2161 ggtggatgtg ccataggaca aagacctatt gatttacatc ttttagcctt agaaaaaatg
     2221 ggggcaaata tacaaatcaa acaaggctat gtcgtagcta gtggaaattt aaaaggcaat
     2281 gaaattcttt ttgataaaat cacggttaca ggtagtgaaa acatcatcat ggcagcagct
     2341 ctagctaaag gtaaaaccaa actcttaaat gttgcaaaag aacccgaagt agttcaactt
     2401 tgcgaagttt taaaagacgc aggacttgaa attaaaggca taggtacaga tgaacttgaa
     2461 atttatggta gcgatggaga acttttagaa tttaaagaat ttagcgttat acctgataga
     2521 attgaggcag gaacttatct ttgtgcaggg gctattacaa attctaaaat tactttagat
     2581 aaagttaacg ccactcatct tagtgcagtt ttagcaaaac ttcatcaaat gggttttgaa
     2641 actttgatta cagaagatag tatcacccta cttcctgcta aagaaattaa acctgtagaa
     2701 atcatgacaa gtgaatatcc aggctttcca accgatatgc aagcgcagtt tatggcacta
     2761 gctttaaaag ctaatggaac tagtattatt gatgaaagac tatttgaaaa tcgtttcatg
     2821 catgtaagtg aacttttaag aatgggtgcg gatattaaac tcaatggtca tattgctact
     2881 atagtaggcg gaaaagaact taacgctgct gatgtcatgg ctacagattt gcgcgcttct
     2941 tcagccctta tcttagcagc tcttgcagct aaaggtacaa gcaaagtcca tagaatttac
     3001 catcttgata ggggttatga aaatttagaa gaaaaattta aagatttggg tgcgaaaatc
     3061 acaaggcttg aagaatgaaa aatatctttg aaaccttaaa agacttagaa aatcaaattt
     3121 catgtttaga tgaaagtgag cttattagcc ttgaaaaagc aaaggataga attttagcta
     3181 aagatttata cgctagaaaa aatctaccta gttttgacaa tgctgctctt gatggctatg
     3241 cttttaatta tactgatatc aatgaggctt tggagattaa agggactatt tttgcaggag
     3301 ataaaaattt ttatacagtt gctaaaaatg aatgctataa aatcatgaca ggggctaaaa
     3361 tgcccaaaaa tgctgatact atcttaatgc tagaagatga gtatatagaa gaaaataaac
     3421 tcatcattaa aaaagctcct aaacaataca atgcctatcg ctataaaggt gaagaattaa
     3481 aaaaaggtga aattttactt caaaaaggta ccaaacttaa tgataaacat atcgccctgc
     3541 ttgcttctca agggctttat aaaatagaag tcataagaaa aattcgcata ggtatttttt
     3601 caagtggaaa tgagctaaaa gaaccttggc aagaatgcga tgaagaaagt atttataatg
     3661 ccaatgcttt gcctttacta actatgcttc aaaatgcttc ttatttgggt attatcaaag
     3721 atgattttaa aagcactaaa gaggctttag aaaatacaaa ttttgatctt ttaatcactt
     3781 caggaggtgc aagcgttggc gaggctgatt ttatggaaaa agctttagat gaattaggct
     3841 ttactccgct ttttaaaggt ttaaaagcac gccctgcaag acctactaag ctttatagaa
     3901 aaggtgaaaa tttcgtattg attttaccag gaaaccctat ggcagcttat ctttcttgtt
     3961 ttatttttgc taaaaaaatc attaatttat taagtggaaa cctagacaat cctttaacat
     4021 tttatggcaa aatgggtatg gatttaaagc ttaaaagcgg aagaaataat ctcattttag
     4081 gaaatttaga aaaaggtatt tttacaccat ttaacgaaaa caaatttggc tctggtatga
     4141 tacttccact tattaaaagt gagtttttgc ttataagcga agaaaatacg agtgaattaa
     4201 aaaaaggtga tgaaatcacg cttttaaaaa tataatgttt gtgtttttca caaacattag
     4261 cttaatttat cctcatcatc atgatcatgg atatattgct catcattttc caaggtatca
     4321 acaaaacgcc ctatcctttc ccagcgaaca tttttatctt tatcccaaga gaaatataca
     4381 aaccaaggtt tacctactat caacctataa ggaacagaac cccaaaaacg actatcataa
     4441 gaataatcgc gattatcacc catcatgaaa tactcatttt caggtacatc aaaaacataa
     4501 gcatttccgc cgctaaaacc tatatgattt ccaagttctt taatataagc tggagacatg
     4561 gcaaaatcac ctatgctaag aaagcgtaaa atatcgcttt ctatatcttt ttttggatca
     4621 taatgaatac ctttttgttt ataaggttct tttacataaa tttgccctcc aagagtaaca
     4681 agatcattcg gataatgttc tttcataaat ttatcaccct catgcattct tacataaagt
     4741 gttttatttg cataaactat cctatctcct cctgtgccta cacaacgctt tacaaagtgt
     4801 tctttttcat ttctaggatt tctaaaaaca actatatctc ctctttgtgg cccttgtgct
     4861 tttatcaaat gcccatcttt attaaaatcc ggcaaaacag gaatttccaa ccaaggaata
     4921 tgaggagttg ggataccata gctaaatttt ttaacaaata aaaaatcccc tactaataag
     4981 gtgtttttca tagaaccaga aggaataaca aaagcttgta taaagaaaaa aatcaccaaa
     5041 agaacaataa ctacagttcc agtccaagac tgtgaaaatt tatataattt ctttaaaatt
     5101 tccatagatt ttccctaatt aagtctattt ttagcagatt taactgtgtt ttctaaaagc
     5161 atggctatag tcataggacc tactccacct ggaacaggag ttatataact agatttttta
     5221 gatacctctt caaaatctac atctccaact atctttccac tttcaagacg attgattcca
     5281 acatcaacaa caatcactcc ttcttttacc atatccgatc gaagtaaatt cacacaacct
     5341 gctgctacta taatcaaatc agcttgccta gtataaaggc tcaaatcttt ggttttaata
     5401 tgacaaacgc ttactgtagc tccagcattt aaaagcatag tagccatagg acgacctact
     5461 atatttgaag cacctataat aacagcgtct tttccttcta aatcaatttc ataagccttc
     5521 aaaagcttca tagctccaag tggagtacaa ggcaaaaacc cactttctaa gcctaaattt
     5581 aaatatccta cattaatagg atgaaagcca tcaacatctt tactacttat aatactttca
     5641 agtattaaat ctttacaaat atgatcaggt aagggaagct gaaccaaaat tccatgaaca
     5701 ctatcatcgt gatttaaggt attaatcaat gccaaaagtt cattttgtgt agtattttca
     5761 ttaagatgat aaactaaaga tttaattcca cattcttcac aggctttagc cttagatttt
     5821 acataagttt gacttgcagg attatctcca accaagataa cagctaaaca gctttcaatc
     5881 cctttgcttt tcaaaaattg atttttttct tttaattctt ctttgatttt tgcgcttaaa
     5941 gctttaccat caagcaaagt cattattttc cttctataaa tttaatcact tttttaaagt
     6001 aaaaattgta tcatattaaa acttcattaa caaggtgaaa ctttgaaaat tgttttaatg
     6061 ttttttttat ttagtattag tctttttggt gctgatttta tcactcttaa agaatactct
     6121 aaaatgcttt atgaaaatcc aaggggcatt agttgtaaag aatgtcatgg agcagatgga
     6181 agcgaacaaa ttttaggata ttatatgaaa aatggtatta aaacagctta taaagttcca
     6241 agtatacaaa atcttagttt tgaaaatttt aaaaattctc ttaatcagag taaagacgca
     6301 aaatcaatca tgccaaatta ctctttaaca aatgatgaaa ttgtaacttt atataattac
     6361 atcaagcaat ttagcaagga agaaaaatga caaacaaaaa agcttttaaa gaagcgtgta
     6421 aattcatcgc aggtggtgta aattctccag ttcgtgcttt tgcaaatgtt caaagtgagc
     6481 caaaatttat ttctcatgga aaaggtgctt atattttcga tatagatgga aattcttata
     6541 tagactatgt tcaaagctgg gggcctttgc tttttggaca ttgcgataaa gatatacaaa
     6601 aagcttgtca aaaagcactt cataaaggtt caagttttgg agctccaact ttattagaaa
     6661 ctgaacttgc caagcttgtt ttatctgatt ttcctcattt agaaaagatc cgctttgtaa
     6721 gcagtggaac agaagcaacc atgagtgcta ttcgtcttgc ccgtggtttt actaaaaaag
     6781 ataaaatttt aaaatttgaa ggatgttatc acgggcattc tgattcatta ttagtgagtg
     6841 caggaagtgg tgctgctact tttaactctc ctagttcttt gggtgtttta gaagatgtag
     6901 ctaaacacac tttagtagct aaatataatg atataaatag cgttaaagag ctttttgaaa
     6961 aaaataaaga tattgcatgt gttatcattg agcctattgc tggaaatatg gggttagttc
     7021 cagctaaaca agatttttta gaagaacttg ctaagatctg taaaaacaat caaactctgc
     7081 tgatttttga tgaagtaatg agtggatata gagcatctta ccttggttcc tatggaatca
     7141 atcatatcca agcagatata attacttttg gtaaggtaat aggaggcggt ctacctgcag
     7201 cagcatttgc ttctagagct gaaattatgg atattttaag tcctttgggt ggagtttatc
     7261 aagcaggaac tttaagtgga aatcctttgg caatggctgc aggtatagca agtcttacaa
     7321 aagccaaaaa gaaaaccaag ctttatgaca aacttggaaa attagcaaaa aaacttacac
     7381 aaggaatgaa aaaattagca gatgaaaaag gacttccgct gcaagcttgt catgtaggtt
     7441 ctatgtttgg atactttttc accaaagatc ctgtatcaaa ctaccaagat gcattaaaat
     7501 ctgatctagc attattttca aaatttcaca aaaatatgct tgaaaatgga atttatttag
     7561 taccttctca atttgaaaca ggctttatat gttcaaaaat ggatgataaa attatagata
     7621 caacattaga ggctgttagg gaaagcttta aaagaatatg agcaatattt taaaagaaga
     7681 aaaaaatcac ttagaaaatt ccaacagcaa aagacaaaaa atcattcgca aaactcttga
     7741 agctgcggat ggtttaagtc ttggcatctc tatggttgtt gctgtattta taggtgtggg
     7801 aataggatat ttacttaaaa aatttactcc ttatccttgg cttttttggc ttggagtttt
     7861 ttgggggatc agtgctgcta tacttaatgt ttacaaagct tataaagttc aagtaaaaag
     7921 ctatgaagaa tttaaagaaa gagatgagtt gatcaaagaa aaaattcaaa aagaaaagaa
     7981 caaataatgg aacataaaaa agctctattt tgtatttttg ccattattca tttatttttt
     8041 tggatcatat tttcattgtt aaatcatttt aaattagata tatttttaag ctatgaaata
     8101 gcttttttta gtgttttatt gattattttt gcttcttatt taaattataa aaaagtcatt
     8161 ataaaaaaat caaaaaatta tgaaaaagat tttaatttca tttcatcact ttttatcaaa
     8221 aaaaaacaaa atttatcaaa aattattcat tttaaagttc taaaagacga tttaaagcca
     8281 aatgttaaag agaaaatcca tttttttgct atgtttttta ctctctttaa attgatggct
     8341 tatgtaatat tggttgctgg atttttattt ttacatcgcc aagataaatt agatatcttt
     8401 gcttatattt gtggaatttc atccttgcta gtttgtgtgt ttatttttat tttatatata
     8461 aaaaagtatg agtccaaaaa aaattattaa atcaatgaca gcactttttg ctggtatggc
     8521 atttttattt gcaggtaatg ccttgatagt aagctctata ggtgttatat taaaagaaaa
     8581 cggagaaagt tctttagctg ttggagtggt aagttcttgt ttttttatag gcgctcttgt
     8641 tggaaccatc agtgctcata aaattatttc tcgtataggt catatacgct cttttgggct
     8701 atttggtgct atttttggaa tttcagctat gcttcataca gtaagcgaaa atcttatttt
     8761 ttgggctgtt ttaagatttt tcataggaat ttgctactat ggacttttaa tggtcataga
     8821 atcatggctt aatgaaaaaa gcaaaaatgc cattcgatct agaattttag gtttttatga
     8881 aattgttttt tatcttgcgt ttggtattgg agttttaatc atagcgttaa atttaagcaa
     8941 acatagtgta tttatcctca gtgcaacttt aattttactt tcatctttac ctttaaatct
     9001 aattaaaatc aaagaacctg ttttacccgc atcaagtcct atttctatac ctaaaatttt
     9061 tgatatagct cctttagcta tcgtcacaag ctttatagcc ggaatgctta taaatggctt
     9121 tttttctatg acatctttat ttatactttt gcaaggtttt gatacaaaag cggtttctta
     9181 ttttatattt tgtggggttt taggtggttt tattgcacaa accatcatag gaactatttc
     9241 agacaaactt ggtcgcaaat ttgccattat cacttgtgca agtataggat ttatcactat
     9301 gcttatattt atctttttta aacttcattt atatatgcaa tattttttag gaattactct
     9361 tggtatagga atattttgct tatatgcttt agcacttgct agagcaaatg atgttttagt
     9421 aagcaaaaat aaaggtgtag agttaggtcg tggggttctt ttttgttatt ctttgggctc
     9481 tttgtttggc cctttaattt taggtttttt aatgcaatat tttgaaatca aaggttttat
     9541 atggttttat atagtttctt tagcattttt aattcttttt gctatcaata aaccaaatat
     9601 tttaaataaa aaatttaaga aaaagcctgg aaatatggtg atatttgatg attaatactc
     9661 aactagcaag tcaaattgcc aatacgcaaa aaaatgattt aaaagtagat aactctgctt
     9721 caaaagataa aacaaattta aaagacaatc caaaagaagc acttgcacaa actttaaagc
     9781 aaaatttagg tttaagcaag gacgctagta gcgaggaaat actagcaaaa tttgttcaaa
     9841 atgaaacagg taccaaatta aaagaacttg ttaataaact tttagatcaa atcaatgctc
     9901 aaaaaaatcc cgattcccct gtacttaaac aaggaaaaaa tttaaattta gctcctaatt
     9961 ttgctaatga attaaaaatc ttaagtacag aacttgcaaa aagtgatact tttacacaag
    10021 ttttagacag attaaatcaa attttaaaac ctgccagtga aataaaaaac aataacttag
    10081 ctcctttgtt taaaaattca ggcgtatttt tagaagctaa attaaaagat gccctaaacg
    10141 aagaattact acccaaaagt tttcactctc ttttaagtac aatcaaaggt cttagtagcg
    10201 aaaaactaag cgttcagata gcccagcttg caaatacaaa tttaagccca aaagacactt
    10261 taaaagaatt aaaaaatatt attaattcta gcaaaaatga aaataagcaa attttaaatc
    10321 aaagttcttt taaagcactt ttaaatttaa gttctaaatt ggaaaatttt aaaaattata
    10381 taagtaaaaa tcccagtcat gctcaagaaa aaatcacccc tatagctaat aaaattttaa
    10441 aagaattaaa ttccatcaaa aatgattttt tcaaagctct taataagcca gaaaatttaa
    10501 tgataaaaga tccaaacatc cttaagcaaa ctgctaccac ctttgaaaaa cttgaaaata
    10561 ctttaaaaaa tatactaggc aatcaagctt ctaaaataca agataaagaa aatattttag
    10621 aaaatctttt aagtaacaaa gaaaatatca aagaagaaaa acttaatcat aacacaaaaa
    10681 accaagatga agaaaaatat ataaaagtat caaaagaaga aactctcgca gatgatgcta
    10741 aaaccaatat taagcaagat gtaaaaaacg aagaaaattt acctaaaaaa gaagttaatg
    10801 caaatttaga ttctagcaca aaaactcacg aagaaaatat caaagaaaat ccaaaatttt
    10861 atgaaacaaa aacagaaagc aaaacttcaa tcaatacaaa tactaacaca aacaacacgc
    10921 aaaatttaaa taattctcaa aatattcaat ctaacaataa ccaaactatg caaaatattt
    10981 ttaaaaatca ggaatttata aaacaaaata ttgtaaaaaa tttagcattt aatgtagaaa
    11041 atttagatct agaacaagtg caagatttaa gtaaaaattt aagcaatctt tctcgtagac
    11101 ttaatgaaag cttaaaagaa cttgaaccct atactcaaaa tgccaagctt aatcaagcag
    11161 aacttaaaaa tctcgaacac aaactcaatc tttctatcaa agatctagtg caaattaaac
    11221 caaaaacaga acaagatata gctgaatctt tacatcatga tgtaaaatca acacttttgc
    11281 aaatttcaaa tttggctaaa aatgaaggca atgaagctgt atacaatcaa gctaatcgtc
    11341 ttttagcgca aattgaaatc aatcagctta tgtctttagc taatgattct atcaatactt
    11401 atctgccttt ttcttgggat gatttaaatg attctaaaat tatgtttaga cgcggaaaaa
    11461 aggacaaatt ttttgctcag attaaactcg aatttgcaaa acttggggat ttagaaattc
    11521 ttatttcttt aaataatgaa aaatatatag atattaatat tatggcagaa aatattgaat
    11581 ttagaaaaac catctatgaa aatgcccatg agcttaaaag aaatatcaat aaagcaggac
    11641 ttttaagtgc aaatttcttt gtaggtgata tcataagaag taaatttgat actagaaata
    11701 tgaaaaattt agatcttgaa atgggtatgg ataaaaaagt atgagcaaaa tcaaaagatc
    11761 gattaaaaaa gctgtagctc taggctatca aaaagaaaaa aactctgcac caaaagtgct
    11821 tgcaagtggc aaaggcgaaa gtgctgctaa aattatttct ttagccaagg aacacggagt
    11881 tcctattaaa gaagatgaag atttaataga aattttaagc aagcttgact taggtgatga
    11941 aattccacct aatatgtata aagctgtagc tgaagttttt gcctttatct atcaaatggc
    12001 aaataaaact cctaaaaact aatccgctat tttttctcca aatttaatac cctgccctac
    12061 ttttaaatta aaagttaaaa gtcctttttg agagattaaa actatagtag aacctagctc
    12121 aaaatttcct agttcttcgc cttttttgaa atttaaattt tcatattttc tagtaaaatt
    12181 atgagaaatt ttagcattgg tttgtatgct tgcatcaaaa ttaaaacgca tttttcctac
    12241 attttgcgct cctacaaaaa caagccaaaa aatacctttt tcattttgac atttcaagct
    12301 cactctttca ttttttacat ataaattact aatgcgttct aaatgttttt catttacgct
    12361 ataaagcact ccacttgtgt aagttgcact taaaatttgc atatcacaag ggctgtgata
    12421 acgatgataa tcttttggag aaagataaat attgacataa tcaagcccat ttttaagctc
    12481 atctttttca aagctatctt ttaaaagctc ctcaatgcta taagtatgtc cttttataga
    12541 aaaagcaaaa tgttcttcat ttgccaaaaa agtacttcca cactctaaaa ttttaccatc
    12601 acttggactg ataaaacctt cttcaagctt tcttggaatt tgcaaagttc ttgtaaaaag
    12661 agcatttaaa ctctcgtatt cacaagggct tttaaattca ctcatatcga tattaaaata
    12721 cttaacataa ttttcattaa taactttttg tatcatttta ggaaatttaa tccccgctac
    12781 aaaaccaaaa agtctcgaac tttcttttga aaaactcatt tttttccttt taaatttaaa
    12841 atcactattt cactcggagc aaaaactcta agacttggcc cccaaaatcc tgctccacta
    12901 ctcacataaa gcttagtttt ttctcctaaa tcataaagcc catgaacaaa accttgctga
    12961 agtttaacta aaaacataaa agggaaaatt tgccctccat gtgtatgccc acttaaaaca
    13021 agatcaaaat cacttaaatc ataaagcaaa gctgttttag gttgatgtgt gagtaaaata
    13081 ctagctttac ttgtatttaa atccactttt attcttgcta aatcaggagc atataaaccc
    13141 ctatcaagtc cggctaaatc tccaagtcca gcaatattta taaaacccaa atctaaattt
    13201 tgattgacta aaattttcat attagtatgt tttctaagca aatccaaaac ttcattgata
    13261 ccatgataat actcatgatt tcccaaagca taaaaagttc cgtaagtgga gttaaaatca
    13321 ttaagttttg agatgtaatt ttttaaatct ttaggattag tatcaatcag atcccctact
    13381 attacaacca tatcaggact ttgcaaattc actttagtga tgagcttgtc taaaaaattt
    13441 tcatgcaaat ttttacccaa atgtatatca gtaagcatga caatttttaa atctttttta
    13501 agatttggta tttcaacatc aacactcttt acttcaggtg tttttagagc attatttata
    13561 cttacataaa ttaaaaacac acttaaaact ataagagaaa gttcaaaaat caaacgcaaa
    13621 ataagattat atgttttatc tcttttaccc ataagagcta aaatcaattt aacaaaatcc
    13681 catgctaaag tcataaaaaa caaacaataa gtcggcgcat aaaacatggc taaaatttca
    13741 taccaagtat cacttaaata ttcatctcta cgaaatatta aaaacacagc ttgagctaaa
    13801 aaaagcacaa taaaaataaa ggaaaaaatt ttataaaaat acttaaaaag agtaattttc
    13861 ttgattaatc ttttataaat ataaacattt gctaagccaa aaattaataa cacaatgaaa
    13921 gaaaaaatta aaaatatcat acaaagtatt ataaccaagt aaaattaaat atccgtataa
    13981 atttttctgt tataataagc ttttaaataa ttttaaaggc tataagatgt accgttttgc
    14041 accttctccc acaggtgata tgcacatagg aaatttacgc gcagcaattt ttaattatat
    14101 ctgtgcaaga caaaaaaata tggattttat cttacgtatt gaagatactg ataaggctag
    14161 aaatatagca ggaaaagaag aagaaatcaa agaaatttta aatcttttta gtatttcatg
    14221 gcagcattac tatatacaaa gtgaaaattt aaaattccat cgccaaatgg ctttaaaact
    14281 tgtaagcgaa aaaaaagctt ttgcttgttt ttgcagcgaa gaagaacttg aagcaaaaaa
    14341 agagctggct aaaaaacaag gtaaagctta tcgctacgat ggcacttgtg aaaaactagc
    14401 cgatattgat gttttagaat gtgaaaaacc ctttgttatc cgtcttaaaa aacctactca
    14461 tactatgaaa tttactgatt ttatcaaagg cgagcttagt tttgagcctg aaaacataga
    14521 ctcttttgtg attatgagaa cggataaaac tccaacttat aattttgctt gtgcggttga
    14581 tgatatgctt gaaaatgtca cttgtattat acgcggagaa gatcatgttt caaacactcc
    14641 aaaacaagaa catatccgcg caagcttagg ttataataaa gccataactt atgcacactt
    14701 gcctatcatt ttaaacgaag aaggtgttaa aatgagtaaa agagaagcac attcttctgt
    14761 aaaatggcta cttgaaagtg gaattttacc tagcgcaatc gcaaattatc ttgtcatact
    14821 aggcaataaa actccttgtg aaatttttac cttagaagag gctataaaat ggtttgatat
    14881 ttctaaagtt tcaaaagctc ccgcaagatt tgatcttaaa aaacttttgc aaattaatcg
    14941 cgaacatatc aaaatgataa aagatgatga gcttaataaa attttagatt taaacaaaga
    15001 tcttgcacca cttgctaaat tttacactca agaagcaagt actataaaag aacttaaaga
    15061 aaaaatgcaa gctattttta acgcaaaaaa ttttggcgag tttgaaacag aatgtaaaat
    15121 tttaaaagaa ctcttaaaag atattgaact ttttgaaaat tatgaagatt ttaaaaatga
    15181 acttttaaac aaaagcaact taaaaggtaa aaaatttttc atgcctttaa ggataatttt
    15241 aacaggaaat atccacggac ctgagcttag cgatctttat ccttatatta aaaattttat
    15301 tcacgaatta gcaaggattt aactatggtt atagactctt ttattatttc tatttttcaa
    15361 gtactacaaa ttgtcattaa catttatact tggattatta tcatcacagc acttctaagc
    15421 tgggtaaacc ctgatcctta taatcctata gtgcaaattt tatataaact aagctaccct
    15481 gcttacgcct tagttagaaa aattccaaca cgcattggta atattgatct tgcgcctttg
    15541 attatagtct tagcattgca gtttcttggc atttttcttg ggaatatctt aaggagtata
    15601 ttgtgataaa aaaaatactc gtttttttat ttattttttc aagtttaaat gctacacaat
    15661 atagtataga aaaactcaaa aaggaagaaa attcacttgc taaggattat tatatttata
    15721 ggcttttaga aaaaaataaa atcagtaaaa aagatgcaca ggatttaaat tctcatattt
    15781 ttcgctatat aggaaaaatt aaatctgaac ttgaaaaaat catcccttta aagccttata
    15841 tcaacccaaa atatgctaaa tgctatacct atacagcaaa tactatctta gatgcaaatt
    15901 taacttgtca aagtgtgcgc ttaaattcat tagtttttat agcgagtcta aattccaaag
    15961 accgaactac tttagttcaa acctttaaaa atcaaagacc tgatttgaca aatttattgc
    16021 tagcttttaa tacttctgat cctatgagct atatagtaca aaaagaagat attaatggtt
    16081 tttttaaact ttataattat tctaaaaaat acgacttaga tttaaataca agtttagtca
    16141 ataaactacc aaaccacatt ggttttaaag attttgcaca aaatattatt attaaaaaag
    16201 aaaatccaaa atttagatat tctatgctag aaataaatcc tgaaaatgta agtgaagatt
    16261 ctgctttcta tttaggagtc aatgccttaa cttatgataa aacagagctt gcttatgact
    16321 tttttaaaaa ggcggcacaa agttttaaat cgcaaagtaa taaagacaat gctatatttt
    16381 ggatgtggtt gattaaaaac aatgaagaag atttaaaaac tttatcgcaa agttcttctt
    16441 taaatattta tagtctttac gcaaaagaac ttaccaacac accttttcca aagatagaaa
    16501 gccttaatcc aagcaagaaa aaaaataatt ttaatatgca agatcctttt gcttggcaaa
    16561 aaataaacaa acaaattcgc gatgctaacg caagtcaact agatgtcttg gcaaaagaat
    16621 ttgacacaca agaaaccttg cctatttatg cttacatatt agaacgcaaa aataatttta
    16681 aaaaacatta ttttataatg ccttattatg acaatataaa agactataac aaaacaagac
    16741 aagctttaat tttggctatt gccagacaag aaagtcgttt tattccaact gctatttcag
    16801 tttcttatgc tttaggcatg atgcaattta tgccattttt ggccaatcac ataggggaaa
    16861 aagaattaaa aattccaaat ttcgatcaag attttatgtt taaacctgaa atagcatatt
    16921 actttggaaa ctatcatcta aattaccttg aatcacgttt aaaatctcca ctttttgtcg
    16981 cttatgctta taatggcggt ataggattta ctaaccgtat gcttgcaaga aatgatatgt
    17041 ttaagacagg caaatttgaa cctttcttgt ctatggaact agttccttat caagaaagcc
    17101 gaatttacgg aaaaaaagtt ctagctaatt atattgtgta tcgacatctt ctgaacgata
    17161 gtataaagat ttcggatatt tttgaaaatt taattcaaaa caaggcaaat gatctaagca
    17221 aatcttagct acaagcctaa tctcttcctt gacactagga agagatgctt taaaataatc
    17281 agtatagttg ttttgtatta tatattttaa atactcatca tccaattttt caatattggc
    17341 ttttttatta ttgataaaaa cttctaaatt ttgaattttt aatgtatttg gagtaaaaga
    17401 taaagctaat acatcatctt tacttgtctt gtctagaatt gggtttaaat aagacatagt
    17461 tataatggca ttaatcttat cttgtgtgat tttgtatttt tgagtaaaca ttaaagtttg
    17521 agattttaaa tttgtatcca caatcgcctg atcttttaaa gaacaagctc caagcaaaaa
    17581 agcacctaaa attacactat aaattttcat tctttttcca tattttttag tattattgta
    17641 gccttttaac cctatttttt ggtttaaaaa gatataattt tgcaaaaaaa ttaagagtat
    17701 attttatgaa acaacttatt atagctttta gcgggccttc aaattcagga aaaactacac
    17761 tcataaccaa aatagctgat aattttttgc aacaaaattt aaaagtttta atcattaaac
    17821 atgatcctgc cgataaagct caatttgatt ttaacggtaa agatagtttt aaattttttc
    17881 aaagtggagc tgaagtcatg gttttaagcc ctacaagaac aacttttttt tctcatgaaa
    17941 atagagatat tttaaaagct ttaaaattaa gccctgattt tgacatttgt ttggttgaag
    18001 gattaaaaac tcttgattta ccacgcatta gcgtattttg caaagaaatt gatgaaagtt
    18061 attttatttt ttcaaacgcc attgcaagct atgaaaaaat ttctcaccct tatcttactt
    18121 ggcttgattt aaacgatata caagctattt gccaatacat acttaaaaat gctaaaaatt
    18181 tacaaggaga attataaaat gcaagaagtg atttcttata tacaaaaagc ggttttagaa
    18241 atttctaacg ctttaaaatt tcccgataca agctacagtc aaaatcaaaa ttttacaggc
    18301 gatacccaac tcaaatttga tgttttaagc gatgaaatca tcacaaaaac tctaagtcaa
    18361 tgttcaagta ttaaagccat cataagtgaa gaaaaagacg aaattttaac gcttaacgag
    18421 agggcaaatt ttatcgtagc ttatgatcct ttagacggtt ctagcttaat ggatgttaat
    18481 tttgccatag gttctatttt tgctatctat gaagaaaaag caagtgctaa aaatttaaga
    18541 gctgcgcttt atagtatgta tggagcgcga ttagaacttg tgatttgcaa agatcagcca
    18601 aaactttatc gcttaaatgc aaataatgaa tttattttta taaaagatct taaaatgaat
    18661 gaaaaaggca agattaatgc tacaggcgga acgcaaaaat tttgggaaga aaaacacgct
    18721 aaatttatca aaagtctttt tgatgaaggc tatcgcttaa gatattctgg agccatggta
    18781 agcgatatca atcaaatttt attaaaaggg ggtggcattt ttagctatcc tgcaacacaa
    18841 gatgcgccta atggcaaact tcgtgccttt tttgaagtct ttcctctagc ctttatcata
    18901 gaaaaagcag gcggaaaaac tacaaatgga aaaaaccgct ctttgcttga acttgaattt
    18961 gataaaatcc atgcgacaac tccttgtttt tttggctcag aatatgaaat ttcaaaactt
    19021 ttaaaggctt acaatgaatg aagttagaga tgaatttgag caagatatgg ataaaaaaaa
    19081 agaaatttta ctttcatgtc aaaactcaaa aaacctaaac tcttgttata attgcgatga
    19141 aatttttaac tgccaaacta gaaaaaatta tgttgatgca gtctataaca gtatgtctaa
    19201 gggtaaaacc gaaggcggat ttgactttta aaggaaaaaa atgcgttata ttacaacacc
    19261 aatttattat gtaaatgatg tgcctcattt aggtcatgct tatactacca tcatagccga
    19321 tactttagca agattttatc gtttgcaagg acatgaaaca agatttctaa caggaacaga
    19381 tgagcatgga caaaaaatcg aagaagctgc caaactaaga aattccactc ctcaagaata
    19441 cgctgataaa atcagttttg aatttaaaaa attatgggat gaatttgaaa tcacctatga
    19501 tatttacgca agaacaactg atacaaggca tattgaattt gttaaagcta tgtttttaaa
    19561 aatgtggcaa aaaggtgata tttataaaga tgaatacgaa ggacactatt gtatttcttg
    19621 tgaaagcttt tttactcaaa gtcagcttat taacgattgt tcttgcccag attgtggcaa
    19681 acaaactaga attttaaaag aagaaagcta ttttttcaaa ctttcaaaat atcaagataa
    19741 aattttacaa tggtatgaag aaaaagatcc catcttgcca aaaaacaaaa aaaacgaact
    19801 tataaatttt gtccaaaacg gccttaaaga tctttccatt acaagaacaa gttttgattg
    19861 ggggattaaa ctgcctcaag aaattaatga tgataaacat attatttatg tatggcttga
    19921 tgcacttttt atctatgtaa gctcacttga ctttcaaaac aagggggaaa atgctaaatt
    19981 ttggcctgcg catgtgcatt tagtaggaaa agatatcttg cgttttcatg ccatttattg
    20041 gccagctttt ttaatgagcg tggatttgcc tttgccaaaa tttataggtg cacatggctg
    20101 gtggactaaa gaaggtgaaa aaatgagcaa atctaaaggc aatgttgtaa aacctaaaga
    20161 agtggttgat atctatggaa gcgaagcttt tagatatttt ttacttagag aagtgccttt
    20221 tggtaacgat ggggatttta gcgaaaatat gctgataaat cgtatcaatg cagagcttag
    20281 caatgaattt ggaaatttac ttaatcgcat tataggtatg agtacaaaat attctcaagg
    20341 aaatatttca aaagaaggtg ttttaaaatt tcacaatgtt gaattaaatc aagcaaaaga
    20401 acacttaaat ttagcggtag aatttttaga aaacttacag tgtaatcgtt atttagaaga
    20461 actttttaaa gccttaagtg tagcaaattt agctattagt aaatacgaac cttggaattt
    20521 aatcaaagaa aacaaacacg aacaagctaa cgctttagtt gcactttgtg caaatatttt
    20581 agccaaaaca agccttttat taagccctac tctaccaaag tcttgtcaaa aggtggcctt
    20641 agctttaaat tttgaaattt catctacaaa ttatgcaaaa atgatacttg ataataaact
    20701 tttagatttt aaagcaaatc cttgcgaagc tttatttcca aaagtagaaa aagctctttt
    20761 aaaacaagaa attaaagaag aacctaaaaa agaagaaagt cctaaaataa aaatcgatga
    20821 ttttgcaaaa attgaaatca aagtcgctaa agtgcttgat tgtcaaaata tagaagggag
    20881 tgaaaaactt ttgaaatttc aactcgaact tgacgataaa gaaatccgtc aagtactctc
    20941 aggcatagca aaatactata aagccagtga tttaatcggt aaacaagttt gcattataag
    21001 caatcttaaa aaagctaaaa tttttggaca tgaaagcgat ggtatgatac tttctgcaaa
    21061 aagcggagat aaacttgttt taatcacccc tgaacaactt gtacaaaacg gttctttagt
    21121 gggttaaaat atgcaaatta gcaatttagg cgaactttta aacgcgacac tcattcatga
    21181 aggtagcgtt ttaagcgtgg aaggttttgc cataaattta aatgaactta aagcaggctt
    21241 tgccttcttt aataacgata aaaaagaaat tacccaagct gtaaaaaaag gcgcttatgc
    21301 tataattaca gaaaatgaca ttactattga agataaagac attttttact ttagagtaga
    21361 aaatctagaa caagctcttg taagattttt acgctttttt tgcgaagata aagaatgtga
    21421 atttttgctt tttaaatctt acgaactaag tctttgtaag gctttttatt ttaacatttt
    21481 aaaaggaaat atttttgctg attttgaaaa actaatcaaa gcaaaaaagg gtgaaatttt
    21541 ttgctactgt gaagaaaatt acttaaataa actttgtgcc tattctcata gtctaaaaga
    21601 tgctaatttt accttattat cgcgatctag cttctttttt acaactttga tttgtgaaaa
    21661 tttatatttt aaaaatctta atttgccttt tttttacgca aatagttttg caaaaattat
    21721 ttctttttta aaagaaaaaa atcaaaaaat aatatttgac tttaataaga ttgatgattt
    21781 taaaatttat tttattgatg ataaatttga aatcactcct tttggttcaa gctctc
//
LOCUS       DAPIWU010000016        20158 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.016, whole genome shotgun sequence.
ACCESSION   DAPIWU010000016 DAPIWU010000000
VERSION     DAPIWU010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20158
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.016"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..1119
                     /locus_tag="RJ285_000483"
     CDS             <1..1119
                     /locus_tag="RJ285_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HDV7383292.1"
                     /translation="FCTALHYYFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIF
                     FFLKWQKNFNQKTSFMLFLLLILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNY
                     FGVFGIYVYLIFITFLAFLSLKIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFIS
                     CVISFCIVLYFFMVSSKPLTIDEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGK
                     VIRFFLINKREDKDSPVAVFDACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGC
                     NPIPLKYEYDGKKITIDVKDVIAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKG
                     ITYYFSNQNNYEEFKKDPTKYVEENEAQFLIQRRNDVG"
     gene            1106..2398
                     /locus_tag="RJ285_000484"
     CDS             1106..2398
                     /locus_tag="RJ285_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7383293.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            2388..3506
                     /locus_tag="RJ285_000485"
     CDS             2388..3506
                     /locus_tag="RJ285_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDV7383294.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNTEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            3503..4156
                     /locus_tag="RJ285_000486"
     CDS             3503..4156
                     /locus_tag="RJ285_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7383295.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            4153..4641
                     /locus_tag="RJ285_000487"
     CDS             4153..4641
                     /locus_tag="RJ285_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7383296.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            4602..5105
                     /gene="traF"
                     /locus_tag="RJ285_000488"
     CDS             4602..5105
                     /gene="traF"
                     /locus_tag="RJ285_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HDV7383297.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(5115..5552)
                     /locus_tag="RJ285_000489"
     CDS             complement(5115..5552)
                     /locus_tag="RJ285_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HDV7383298.1"
                     /translation="MKKTILTILFLLTLTQAKEIQIYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SALGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(5851..6267)
                     /locus_tag="RJ285_000490"
     CDS             complement(5851..6267)
                     /locus_tag="RJ285_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383299.1"
                     /translation="MKKLGLVLAVLVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVDPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SDGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
     gene            complement(6442..6526)
                     /locus_tag="RJ285_000491"
     tRNA            complement(6442..6526)
                     /locus_tag="RJ285_000491"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6490..6492),aa:Leu,seq:tag)
     gene            complement(6531..6607)
                     /locus_tag="RJ285_000492"
     tRNA            complement(6531..6607)
                     /locus_tag="RJ285_000492"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6571..6573),aa:Arg,seq:tct)
     gene            complement(6622..6698)
                     /locus_tag="RJ285_000493"
     tRNA            complement(6622..6698)
                     /locus_tag="RJ285_000493"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6662..6664),aa:Arg,seq:tcg)
     gene            complement(6702..6778)
                     /locus_tag="RJ285_000494"
     tRNA            complement(6702..6778)
                     /locus_tag="RJ285_000494"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6742..6744),aa:His,seq:gtg)
     gene            complement(6803..6880)
                     /locus_tag="RJ285_000495"
     tRNA            complement(6803..6880)
                     /locus_tag="RJ285_000495"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6843..6845),aa:Pro,seq:tgg)
     gene            complement(6923..7771)
                     /locus_tag="RJ285_000496"
     CDS             complement(6923..7771)
                     /locus_tag="RJ285_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDV7383300.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIISQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNATKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(7771..8433)
                     /gene="cgpA"
                     /locus_tag="RJ285_000497"
     CDS             complement(7771..8433)
                     /gene="cgpA"
                     /locus_tag="RJ285_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HDV7383301.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(8423..8626)
                     /locus_tag="RJ285_000498"
     CDS             complement(8423..8626)
                     /locus_tag="RJ285_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383302.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(8692..9936)
                     /gene="eno"
                     /locus_tag="RJ285_000499"
     CDS             complement(8692..9936)
                     /gene="eno"
                     /locus_tag="RJ285_000499"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDV7383303.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIEFESDEYLGEKL"
     gene            complement(9936..10967)
                     /gene="recA"
                     /locus_tag="RJ285_000500"
     CDS             complement(9936..10967)
                     /gene="recA"
                     /locus_tag="RJ285_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDV7383304.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            11073..11933
                     /locus_tag="RJ285_000501"
     CDS             11073..11933
                     /locus_tag="RJ285_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HDV7383305.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILDFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDFLI
                     PSEYEEARNS"
     gene            11945..12214
                     /gene="fliQ"
                     /locus_tag="RJ285_000502"
     CDS             11945..12214
                     /gene="fliQ"
                     /locus_tag="RJ285_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HDV7383306.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            12211..12987
                     /locus_tag="RJ285_000503"
     CDS             12211..12987
                     /locus_tag="RJ285_000503"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDV7383307.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLVSPK
                     PKNIGILGDGFNFIQILDRNKDFIHLRIGCKTKSSKIYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDTLKDEALKNARSNQPNGASFGSIFKNPKNDFAGRLIEAVGLKGFNKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIKLARKKVFEEFGINLENEVIII"
     gene            complement(12995..13759)
                     /locus_tag="RJ285_000504"
     CDS             complement(12995..13759)
                     /locus_tag="RJ285_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383308.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLRLDWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVASVNFKIISTSNGKILAAKNAKLNL
                     ILKDQDTKQNYQDIVNQMPKMLASVIDNEIKKLKIY"
     gene            complement(13799..14563)
                     /locus_tag="RJ285_000505"
     CDS             complement(13799..14563)
                     /locus_tag="RJ285_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDV7383309.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPITSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRSVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYSPLNYKSSPFICVSSRNFLQDFL"
     gene            complement(14643..15911)
                     /locus_tag="RJ285_000506"
     CDS             complement(14643..15911)
                     /locus_tag="RJ285_000506"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDV7383310.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(16026..17201)
                     /locus_tag="RJ285_000507"
     CDS             complement(16026..17201)
                     /locus_tag="RJ285_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDV7383311.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAVIVMSMIKFLSNSKK"
     gene            complement(17182..18018)
                     /locus_tag="RJ285_000508"
     CDS             complement(17182..18018)
                     /locus_tag="RJ285_000508"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HDV7383312.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     TVIMVAGGREVVLQERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(18020..20122)
                     /gene="topA"
                     /locus_tag="RJ285_000509"
     CDS             complement(18020..20122)
                     /gene="topA"
                     /locus_tag="RJ285_000509"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDV7383313.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEAYAISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
BASE COUNT         6667 a         3481 c         2988 g         7022 t
ORIGIN      
        1 ttttgcaccg ctttgcatta ttatttttta agtcaagatt tccctatttt tactagctct
       61 ttaatcgata gcgaaggtat aagttcttta ggttttattg ctttagcctt gcttgtttgt
      121 attttgattt tcttcttttt aaaatggcaa aaaaatttta atcaaaaaac aagctttatg
      181 ctgtttttac tgcttatcct tatagaaagc gataaagctc tagccaatat cttgcttact
      241 ttaatgcgaa attccatcat agaaactcat gcttttttgg tgagttttgt aggaaaaagt
      301 aattattttg gtgtttttgg aatttatgtt tatttaattt tcatcacttt tttagcattc
      361 ttaagcttaa aaattcgcaa aaaaaatata agcaaaaaac aaattttaga tataaattat
      421 cgcaaaaacg aagctaaaac aagtcttatt aatcgctatt tttccagtgt ttttatctcc
      481 tgtgttataa gtttttgcat tgttttatac ttttttatgg taagctctaa gcctttaacc
      541 atagatgagc ctaaagaaat tttacccgat aagaatggca aatttatctt tgatatagct
      601 cttttaaggg ataacaaact ccaccgcttt gcttatatca gtgctgaagg caaagtgata
      661 aggttttttc ttatcaacaa aagagaagat aaggattctc ctgtagctgt ttttgatgct
      721 tgtatgattt gtggagatat gggctatatc aaaaaagatg gacaactcat ttgcatttct
      781 tgcaatgtgc gtattttctt gccaagtgta ggtaaaagcg ggggttgcaa tcctatccca
      841 ctcaaatacg aatacgatgg taaaaaaatc accatagatg ttaaagatgt aatagcagga
      901 tctaattatt ttagtcaaat caaagaaatt gaagtgcaag atcctgtatc aaaaacaaag
      961 gttataaaca cccaagctcc tttttcttat agctataaag ggattactta ttatttttca
     1021 aatcaaaaca actatgaaga atttaaaaaa gatcctacaa aatatgtaga agaaaacgaa
     1081 gcccaatttt taatccaaag gagaaatgat gttggctaaa atgattttta actctatatt
     1141 taaaaacaaa attcaaaaat ttttagcctt tcttacttgt tttttagcca cgcttttgct
     1201 ctctactatg ctaaatatta ccctaagtat aggtgatgaa gtaactaaac aactcaaaag
     1261 ctatggctct aatatccttg ttttacccaa aggctcaagc cttagtatag aaataggtaa
     1321 tgaactttat gaacccttaa aaaacaaaaa ctatctagaa gaaaaaaatt tatatatgat
     1381 taaagacatt tattggcgta acaacatcac cgcacttgct ccttttttgg aaggtaaaat
     1441 cacaattgaa aactcccaac aaaaagcact tatttatggt acttattttc aaaaagccat
     1501 aaaaattaaa gatgatgatg attttatcac aggtataaaa agtctttatc cttatttagc
     1561 agtgcaagga gaatgggcaa aagatgatag taatgaaatc atgctaggcg aagactttgc
     1621 taaaaacaat aaactaaaat taggagatac tatcaaactc ataggagaaa acaatcaaag
     1681 caaagaagca aaaatcgtag gcattttact tcatgccaat cctaaaatgt caaataaaat
     1741 catcgctcct ttaaatttag ctcaagattt actcaacaaa caagggcttt actcaagtgc
     1801 agaagtaaga gcttttacca tacctgaatc agccctttct gaaaaagtac gtcgcatggg
     1861 cgaagaaaaa ttagatcagt tagaatatga caaatggtat tgctcagcct atgtaggctc
     1921 aatcgctagt caaattagcg atggcttacc aggtgctgat gcaaaagctc taaatgctat
     1981 aagcgatgct caaagcttgg tggttaaaaa gatccaatcc ttaatgggca ttacttgtat
     2041 tatttgtctt attgttgcaa gcattgcgat ttcaagtcta atgagttctg aaattcatcg
     2101 cagaaagaaa gaaataggac ttttaaaagt acttggtgct aatacttttc aaatttatct
     2161 catctttgct agtgaaaatt taatcgtagc tttatttgct gctttatttg gctttatttt
     2221 tggcacagca ctttctcaaa tcatcagtct tagtattttt ggatatttta ttgatatagc
     2281 ctttatagct ttacctttaa gctttatttt tgcaggactt attgccttac ttggttgctt
     2341 gcttcctata aaaaatatca cacaactttc agctgcagga gtgctttatg gtagataagt
     2401 ttttcctcaa tgagcttttt aaaagcatta gcttttctta tcaaagactt tttattatag
     2461 ttttaagtgt ttttatagga gcacttactt gctcagcttt tttaaatatt tattttgata
     2521 tcgacatcaa actttctaaa gaattaaaag cttatggagc aaatgtaatg ataagtccca
     2581 agcaggatga aaattttatc tccaatactg agtatgaaaa aataaaagaa aatttaaagg
     2641 ctagagcttt aactcctttt ttgtatgatt ttttaaattt aggcagtaca agcggggtgg
     2701 ttttaggcac tgattttagg gctttaaaaa tcactaaacc ttttttagaa gttaaagaag
     2761 gaagcttttc tctaaatgat tttgatgaaa attcagcctt tttaggagtt aatttagcca
     2821 agcaactagg cctaaaagca ggcaatgaac ttcaaattta taatccaaac aacggaaaaa
     2881 gcataaaact taccataaaa ggcatacttt caagcaatga tgaatttgat agcattgttt
     2941 tagccccttt aagcgtggtg caaaatttaa gcgatagagc cggtattaac tatgctaatg
     3001 ctgtagttta tggaaatttt gatgaagtta aagccaaaac acaagcaatc agcaatgaat
     3061 tcatcgatgc aaaacctata tcttcagtat ccttaagtga aggtttagtg cttggaaaaa
     3121 tcaaagcttt aatgttttta atcatacttg tggtattgat catagttact actagtgtta
     3181 atacaacttt aagttctatt atattttctc gcaaaaaaga aatcgcactg cgtttagcct
     3241 tgggtgcgaa aaaaagtgaa atttttaaac tttttgctag tgaatgcttt atagtaagtt
     3301 tttttgctag tttaatcgga gctttttgtg ggatattttt agccaatgtc tttggttatt
     3361 taatttttaa ttctagtatt gattttagat ttatagctgt ttttatagcc ttaatcattt
     3421 ctttgatttt tgcctttttg gctgcatttt ttcctataaa aagagcatta aaaatcaatg
     3481 tgtgtgaaaa tttgaaaggt gaatgatgaa aaaagaactt attaaaataa acaatttaaa
     3541 taaagaattt ggcaaagtta aagccttaaa caatatcaac ttaagcgtct atgaaggaga
     3601 atggcttgcc atcatgggtc catcaggaag tggaaaatca acacttttaa acatactatc
     3661 gctcatggat actccaagct ctggagagta tatcttggat aatgaaaacc tagagcaaat
     3721 ggatgaagag caaaaaatca ccttgcgtcg tgaaaaaata gggcttgtct ttcaacaatt
     3781 tcatcttatc ccctatctta acgccttaga aaatgttatg ctctctcagt attatcactc
     3841 aagtgtagat gaagaagatg ccaaaatggt tcttgaaaaa gtaggacttt cgcatagact
     3901 cactcattta cctagccaat taagtggcgg agaacaacaa agagtttgta tagcaagagc
     3961 tttaatcaac aacccagagc ttttactcgc agatgaaccc acaggaaatt tagatgaagc
     4021 caatgaacaa atcgttcttc aaaccttgca aaaattaaaa aatgaaggta aaaccatagt
     4081 tttaatcaca cacaatcctg atttagccaa attcgcagat cgaaccctta tcttacaaca
     4141 tggggtgtta aaatgaaaaa aagcctttta atcttaagta ttttgttttt actcaatgct
     4201 tgttcttttg aaaattcaaa agatactgga aaagttggag aaaaaagcgc tgaaatttca
     4261 gctaaagata ctttaggaaa agctgtaaaa cttgctgatg ataatacaag tttaaaagtc
     4321 ttagtctttt ttcaaaatgg ctgcccttct tgcttaaaag aactcccttc tttagatgaa
     4381 ttcatacaaa atcaccccaa taaaatcagt gtttatgcta taaattccat cgataatgcc
     4441 aatgtggtta aggttttagc cgaacaattt gactttaaaa atgtaaaagt tttaaaagac
     4501 gatcttaaaa tcaccaatga tcgttacgct gtgtttgcaa cccctactac catcatcatt
     4561 aaagatggga tgataaaaga tagaatttta ggagaaaaac catgggaatt tttcgaatcc
     4621 aagcttattt ctttgcttta atcatagctt tattttttgt agcttgtgat agtggagaaa
     4681 attttaaagc tttaaatagc gataaaacct ataattttgc ctacaatggt tttgaaaaaa
     4741 gcctaaaact aaatgataaa gcacaaaatt ttgccttagt atttttcaca aaagattgcg
     4801 gagtttgcaa agaacaaatt cctattttac agaatttggc taaaaattat gattttaata
     4861 tctttgtggt tttaggcgat gcaaacgatg caaacgatgc aaaagcttgg gctgatgaaa
     4921 aaggtttatc taatttagca atgttttatg aaaaaagagc agctaaatac ctttcaagtg
     4981 ccattgggga aatatatgga gtacctgtgc ttagtttttt caaagaagga aaaatggatg
     5041 aaaaattcat aggcttaact ccttatagca tacttgaaaa agaaatcaaa aaagtaaaaa
     5101 gctaaaaatt tactttaaag ctttttatcc cctataaaat atccataaag ctcatagctt
     5161 ccatcttttt tcatcaaaat tacaggatat ttttcactat aaccttgttc cattcctgga
     5221 cttccttgcg gcatgccaag agctgaaatt cctataacat ctttaggttt gttttcaagc
     5281 aaccatgcta tagcactttc aggaacatgc ccttcaatag catagccttc aatcacacct
     5341 gtatggcaac tttgatactc atcttttata cccatttttt ctttgatttt aagaaaatca
     5401 ttggttttat gaacactaac ctcataaccc ttagctttca tataatcagc ccaaagatca
     5461 caacagccac aagtaggact ttcataaatt tgtatttcct tagcctgcgt aagagtgagt
     5521 aaaaaaagaa tggttaaaat tgtttttttc ataattgcta tcctaagtaa aaaatatata
     5581 ataatacttt tataaagtta atatcatcac atttttaaca ctaaaaatga atttacaaaa
     5641 atttaatcaa gaaaagactt ttaatgagtg ttgattttgt ctttgcagca aagatataaa
     5701 agataaaacg atttaaaaaa ctagaaattt ttaacttaaa aagcttaaaa tttagatata
     5761 ttttatactt actatgtttt ttcatagtat gttctaatgg tggatttccg ccaagagtga
     5821 aaactcaagg cggattttta tttgcaatat ttacttaata gaataattat gatcagctgt
     5881 gcctccacat aaatacccct tcttatcaaa acttgcaatt tcgcaagaaa gagtagataa
     5941 tctagctctt ttaccatcac tagttaatat aagaacttgt ttataataaa cataattgct
     6001 tttatctgaa tattcttttt gtattatagc ttgagttgaa ttataagttc ttggatcaac
     6061 ttttgcaaca atatctgctt cataaaaagt tgccttttta aaaagtggct cagttaaagt
     6121 tgattttata ctctcttgga aatatttgtt ttgcatttcg cttgctgaaa ctggaactaa
     6181 atctttttta ttgataacta tcaaatctgc aaatgctgac acatttaaag caactaaaac
     6241 tgctaaaact aaacctaatt ttttcatttt atctccttga attgaatttt gtatatttga
     6301 attatttttc aaatcttttg caagataatt tttaaattta tctaaattaa atttgcattt
     6361 tatctaacaa tcataagaaa ttttaaaatg aaataaaaat ttatgagaaa tcaactctta
     6421 tttgaaaatg ataaaagtaa gtggtgcgga tgaaaggact tgaaccttca cgcattgctg
     6481 caccagatcc taagtctggc gtgtctgcca atttcaccac atccgcaaag tggtacgccc
     6541 aagaggattc gaacctctga cctacggctt agaaggccgt tgctctatcc agctgagcta
     6601 tgaacgcata taaaatcttg gtggtgcgcc cgataggaat cgaacccata acctacagat
     6661 ccgaagtctg tcgctctatc cagttgagct acgagcgcta gtggggtgag tgatgggaat
     6721 tgaacccacg accctcagga ccacaatctg atgctctaac cgactgagct acactcacca
     6781 ttttgtataa atttataaaa aatggtcggg gtgaaaggat tcgaaccttc ggccccttgg
     6841 tcccaaacca agtgcgctaa ccagactgcg ctacaccccg aataaataaa aggaaatatt
     6901 ttatcacaaa ataattttaa agtcaaggat tttcatctct tattcttaaa aacaccggaa
     6961 agcgaggtaa ggaatttttg gtcaatccat taaatttata agtcacaata ctaccaattt
     7021 ttggaggatt ttttctatct tcatctttta aaccactgcc tattttaatg atttgtccat
     7081 taggcatttt acaaagtaag gcacctactt gattttcaaa tttacccttg cccttgcgaa
     7141 atcctaccaa ctcacattct gcatcatcat agggttttaa tttcgtggca tttttacttc
     7201 tgcctttttc ataaggactt aaatttttgc gtataacaat accttcacct tgatttttta
     7261 taatgctttc gtaaaattga tttaaattat tttgattttc aactggaatt tgagaaataa
     7321 tttttatata ggcactagga tatttttgca aatactcttc taaaacagcc aaacgatttt
     7381 taagagtgca agtagaaatt tgaaattctt cgcaagcatt tggtacatca aaaatattat
     7441 aagttacttc cttccataag gtcaaattgc tatcgccact acgaattaaa gctgaaattt
     7501 catcaaattt atttcttgct atccaaagct caccatcaat agcaaaagga gggaaatttt
     7561 ttgtaaaaaa gtcaggagtt tttattttgt agttttggcg agtttttaga tatttcccat
     7621 cccaaattcc acgcactcca tcaagttttt cgctcatcaa ataagcatta aaatctttag
     7681 agttaaaatc ttgcttatcg aatttgctaa gaagtaaaat ttcattagca aaaactaaac
     7741 aagcacaaca tattaaaaaa acaaacctca tcaaagcaga ttaatcatat atccagttgc
     7801 atctttttga atattataat tataagttcc atcaagatat attacaagtc gataatatcc
     7861 tttatgagat ccaaagtcta tgcgtttaaa aatagaattg ctaaggcgta tgttttttgt
     7921 agggctaatc attttagatc taaaatctat aacgatttta cttggatttc ctactgaaaa
     7981 atctgtaatc atttcatcac tagtgttaag ttttatttta tttttataaa ccgcataaga
     8041 aataaaatca taaatctttg caacctgtaa aggtatttca acattggctg ttgagtttga
     8101 ttcttgttta gagctatttt tttcaggtat agtaactgaa acatcaagta cttttgaagg
     8161 atcagggctt ttaaatcttg atatagtata agtatcgtgc caatcaatac ttttattgac
     8221 atctaaatcg atcttatctt cacttccgtc taaattgata taattaaaag tgatgctttt
     8281 taaaattctt gcactagaat taaatttaac ttcctctttt tgaaattcag gtggagcaac
     8341 caaggttata ttttgatctg tcttgaaagg attttcatca gcatataaaa gagaggtaaa
     8401 aataaaaaat attgccaaaa ttctagtttt catttgggta taatcctttt aattcaaaat
     8461 aatctttttg tgctttagca ttttgttctt tgagcaaaat aatcttttta ttaagctctt
     8521 ctttggtatt ttctaagctt aataaagtat ctaaagaata ctgcccaaaa aacatattgc
     8581 caaaataaat cgctccaatt acaacaagaa aagcccaaaa aatcattttt ataacatggg
     8641 tataaaaact tttttttctt gtgctttcgt cgtattcttt aagtaaatcg ctcagagctt
     8701 ttctcctaaa tattcatcgc tttcaaattc aatttcaagt aagcgattgt attttgcggt
     8761 tctttcgcct cttgctaggg ctcctgtttt aatttgtcct gtatttaaag ccacagcaaa
     8821 atccgctata aaagcatctt cactttcgcc gcttctatga ctcatcacac atttatagtt
     8881 atttctttgc gctaaacgca cagttctcat agtttgggta atagttccga tttgatttgg
     8941 tttgataagt acagcatttg ccattttttt gatgatacct tctcttaaaa tatcttcatt
     9001 ggtcacaaac aaatcatcgc ctacaagctg aattttattg cctaattttt cagtcagctt
     9061 gatccagcct tcaaagtcat tttcagctaa gccatcttcg atactgcaaa ttggatattt
     9121 tgcacaaagt tctacatagc gttcgatcaa agcctcgctt gaaaaagcct tgccttccat
     9181 gtggtattta ccatctttga aaaattctgt acttgccaca tcaagagcaa tttttacacg
     9241 attttcataa cctgcttttt tgatacaagt cattaaaaga tcgataggtt ctgtgttgtt
     9301 agctaaattt ggagcaaaac cgccttcatc acctaaagcc gtagaatgtc cagaatttgc
     9361 gagttctttt tttaatatcg cataaatttc acaaactgaa cgcaaagctt ctttaaagct
     9421 agtaaaacca aaaggcatga tcataaattc ttgaaaatct acattgttgt ttgcatgagc
     9481 accgccattt atgatattac acattggcac gggtaaaatg ctcgcatttg caccacctaa
     9541 gtagcgatat aaaggcattc ccaaagcagc tgcagccgca cgagctgttg ccatagatac
     9601 gcctaaagtc gcatttgcac ctaaatttga gtaattattt gttccatcga gctcacgcaa
     9661 agtatcatca agttgagttt gattaaaagc atctagtcct aaaatttcat ctgcaatggt
     9721 ctcattgaca tttgcaacag cttttaaaac gccttttccg ccaaatcttt catcattatc
     9781 acgcaattct aaggcttctt ttgaacctgt acttgcacca cttggaacta tggccgcacc
     9841 tacacttcca tcgcttagcg taacttcggc ttttacggtt ggatttcctc tactatcaag
     9901 aacttcatag gctctaacat cttcaattac taacattatt cttctccttc gtcatcttcg
     9961 ctaccgctga tcataccttc tattcccata gaattttgaa ttgcttttgt gatttcatct
    10021 gcaatttcag ggttttcttt taagaaagct tttgaatttt ctctaccttg tccaagtttt
    10081 ttatctttat aagaaaacca cgcaccactt ttatctacga tatcaagttt tacaccataa
    10141 tcgatcaatt caccttcacg gcttaaaccc tctccaaaca tcacatcaaa ttcagcttgt
    10201 ctgaatggag gagcaacttt atttttaact acttttactt taacgcggtt tcctataggt
    10261 tcttcgtttt gttttaaggt tgctactttt ctaacatcta aacgcacaga agcataaaat
    10321 tttaatgcat ttccacctgt tgtggtttca ggagtaccat aacccatagc accgattttc
    10381 atacgaattt ggttgataaa aattactgtg gtattcattt tatgaactat acctgtaagt
    10441 tttcttagag cttgagacat aagtcttgct tgaagtccta catgttgatc gcccatatcg
    10501 ccttcaattt ctgcttttgg ggtaagcgct gcaacgctat ctactacgat aagatctact
    10561 gcgccacttc ttgctatagt ttctacaatt tctaaggctt gttctccaaa atcaggctga
    10621 gaaacataca aatcatctgt atttacaccc aaatttttag catattttac atcaagcgca
    10681 tgttctgcat cgataaaagc acaaactcca cctgcttttt ggcattctgc gataatatgt
    10741 aaagttagag tggttttacc tgaactttca ggtccataaa tttctataat tcttcctttt
    10801 ggaacaccgc ctatacctaa agcaagatca agcccaactg aacctgtgcc tatgctatcg
    10861 atttgctcga cttctttatc ccctagtctt aaaatagtgc cttttccaaa ggttttatct
    10921 aaacttttta gggcagcgtc tagagatttt cttttattat catccataac tttccttaaa
    10981 aattctaaat ttttagttag aattctaaca aaataaaatt aaataatgat ttattttgct
    11041 agaattaaag caaagattta aaggaagcat agatgaaaaa aattactatt gcacattctc
    11101 ctgatgctga tgatattttt atgtatatgg caattaaatt tgggtggata gggaatgatt
    11161 ttgcttatga aaatacagct ttagatatac aaactttaaa tgaatttgcc ttgaaaaatg
    11221 aatttgatgc tacggctatt tcttttgggc tttatccttt aatcgcttct gagtatgcac
    11281 ttttacgcac agcagtgagt tttggtgaag gttatgggcc aaaactcatc aagaaaaaag
    11341 acacgcattt aaaaagaaat tttaaagtcg ctttgagtgg agcaaatacc accaatgctt
    11401 tgatttttcg catgaaatat cctgaagcaa gaattattta taagaatttt ttagacattg
    11461 aaaatgcggt tttaagtggc gaagtagatg cgggggtttt gatccatgaa agcattttag
    11521 attttgatca aagtctttac gtggaagcag aactttggga tatatggctt gaatttgcta
    11581 aagaaaattt gcctttgcct ttaggtggaa tggctttgcg tcgttcttta cctttaagcg
    11641 acgcgattaa gatcgaaaga gatttaacca atgctgtaaa aattgccgat gcaaatcgta
    11701 aaattttagc ccctatgctt atggaaagaa aacttatccg tgttgatgaa gaaaaacttg
    11761 atacttatct taatttatat gccaataaaa actctattag catgaatcaa actcaacttt
    11821 tagctgtaga tacgcttttt aaactaggat atgattataa attttatgat aaaatcatac
    11881 atgtaaatga ttttcttatc cctagcgaat acgaagaagc tagaaattct taaaaaggat
    11941 aaaaatggat gaaagtacct tagttgctct tggagtgcaa acctttaaaa tcacactttt
    12001 actttctttg cctatgcttt tagcaggact tattgcaggg cttgtgatca gtatttttca
    12061 agcaactaca cagattaacg aaatgacact ttcttttgtt cctaaaatca tcttggttgt
    12121 agttatttta atctttttaa tgccttggat gactacaact atgattgatt ttactgagaa
    12181 tatactaaat caaattccaa cttttatcaa atgatcattg attttaaaaa atactcttct
    12241 gtgcgtatag gaaatgaatt tgaagtttta gttttggatc aaatttgtga ttttgatggt
    12301 tttttaatag gtggtgcaaa caacctttta gttagtccaa aacctaaaaa tataggaatt
    12361 ttaggagatg gttttaattt tatacaaatt ttagatcgga ataaagattt tatacatctt
    12421 cgcataggct gcaaaacaaa atcaagtaaa atatatcgct ttgctaaaga aaataatctt
    12481 aagggttttg agtatttaag caaaattcct ggcacacttg gtggtctttt gaaaatgaat
    12541 gcagggctta aaggagagtg tatcagtcaa aatttaatca aaattgctac ttctcaaggc
    12601 gaaattctaa gagaaaatat aaattttgat tatcgttttt gtcctttaaa tatgcctttt
    12661 ttttgggctg aatttaaact aaattttggc tttgataccc ttaaagatga agctttaaaa
    12721 aatgcaagaa gcaaccaacc taatggagca agctttggct ctatctttaa aaatccaaaa
    12781 aacgactttg caggacgttt aatcgaagct gtaggactta aaggatttaa caagggagat
    12841 gctatgttaa gcgataaaca cgcaaatttt ttaatcaata aaaaaaatgc aagttttgaa
    12901 gatgcgtttt ttcttatcaa attggctaga aaaaaagtct ttgaagaatt tggcataaac
    12961 ttagaaaatg aagtgattat tatctaaaaa tttttcaata tatctttaat ttttttattt
    13021 cattatctat aacactagct aacatttttg gcatttgatt tacaatatct tgataatttt
    13081 gttttgtatc ttgatctttt aatatcaaat ttaattttgc attttttgct gcaagaattt
    13141 ttccattgct tgtagaaata attttaaaat taacactagc cacaccctct ttactagttg
    13201 tgataaaata atttgtaata tttacataaa aatcttgcaa atttaccacc acaacataat
    13261 ctgtaaattt ggcatacatt ttagccttat ctttttcttg tgttaaaaaa ggactgacat
    13321 ttataagttt tgcatcctta gggctaaaat atgacaaagt tttaggactt tgataaatac
    13381 catttgcagc agaattaacc caatcaagcc ttaaactttg aatcaaattt ttagcaaata
    13441 atgtagaaaa ttccttatca ctcaccctaa aaccatctaa aaaataacca aaatttttcc
    13501 tagaagttaa tacaatggca aaatcaatat ctttatcttt ggtgatttgc gatttttttt
    13561 caatcaaggt agaactatca aacaatgctt tttgttgatt tagatttgga tttgcaacat
    13621 tttgatttag atctattact tcaaaactat ctgcgctttt ttcaatttta ataacttttt
    13681 tctgagaaaa attattcgct aaaagattag aacttaaaac taaacttaaa aacaaaatga
    13741 aacaatacct catcttcatc cttataaact atttaaatat aaaattatac tctttatttt
    13801 ataaaaaatc ttgtaaaaaa ttcctagatg aaacacaaat aaaaggactg gatttataat
    13861 ttaaagggct atataaaatg tattttttag aaaaatctcc cataaatcct ccattttgat
    13921 taatcaaaaa atctcctgct acaatatccc aaatattaag cttttcaaat cttttataaa
    13981 ctcctgccct agcctctaaa atagcacaaa atttcaatcc agagcctata ttaatagctt
    14041 ctaattgatg ctcttttgca aagtcttcat cttctttgct aagatgatta acactcaata
    14101 aggctttata tttatttttc tcgtattctt gctggtcaat ttgcaaaggt ttatcgtttt
    14161 tataaacctt ggtttttgca tgagcataga atatatcacc ttttgatgga ttttgtatga
    14221 gtgataaaac agagcgattg tcatgaacca aacttatcat aacgcaaaat tcatcactgc
    14281 cttttaaaaa accacttgtt ccatcaagag gatcgataag ccaaaaagtt tttaattctt
    14341 cacactcttc tttgctgagt aatttttctt ctgatagaat tttaatatcc gtagaaccca
    14401 aaatatcatt tagaatttta ttagaagcaa gatctgctga tgtaatcggg cttttatctt
    14461 ctttttccca agttttgaaa ttttttctct cttctaaaat agctttagaa gcttgattgc
    14521 tagcatttat agcaatttct aaaaatttat caagattaag catgattata aactttctat
    14581 aagatttttt aaaattatac aagaagattt tgtggaattt ttaatttcca caaaaatttt
    14641 aattatattt tactagtttc acccaaataa agttgtcttg gacggactat tttaagactt
    14701 tcttgctctt tttgctctat ccactgagct atccatcctg gggtgcgtcc tataacaaat
    14761 aaagtagcaa acatttcatt tggaatacct aaggctttta aaataagtcc actatgaaaa
    14821 tcaacattcg gatatagccc tctttgaaca aaataatcat cacttaaagc aatctcttct
    14881 atacgcgttg ctactttaat aagattggta tcaataccca actcatcaat aagttgatca
    14941 cgaagttttt taagtacttt tgctctagga tcaaaatttt tataaaccct atgcccaaag
    15001 cccatcaagc ggaaaggatc gtttttatcc ttagctcttt tgatgaattc atctacccta
    15061 tcaacactac ctatttgctc aagcattcta ataacacctt cattagctcc accatgtgca
    15121 tgaccccaaa gcgcaccaat acctgctgct atacaggcat aaggatgagc gtgagttgaa
    15181 cccacagcac gaactgttga agttgaagca ttttgctcat gatctgcatg aagcataaaa
    15241 actgtatcaa gtgcttttac ttctataggt ttaagctcta catgatcgta aggataggtt
    15301 cttaacatat ataagaaatt ttctgtaaaa ccacgatcta aatttggata agccatagga
    15361 aagccgtgtt tatatctata agcagtagcc actatagtag ggattttagc tactattcta
    15421 gctgccattt ccatatattc ttcttttaca ttcatgttta aatgatcagg ataaaaagca
    15481 ctaagcgatg aaacagcacc ttgtaaaact gccataggat gagcattatc agggaaagaa
    15541 tcaaaaagac gatgcatacc ttcatggata aaagaacgct ttttcatttc ataacgaaat
    15601 gcttcaagac gcgtagcatc aggcaattct ttataaagca aaagatgaac cacatctaaa
    15661 taaagtttgt tttcagcaag ccactctata ggatagccac ggtgcattaa aattccgttt
    15721 tctccatcaa tataagtgat ttttgattta caagtagctg tagaagtcaa gccctcatca
    15781 taagaaaaca ttcctgtttg tttataaaaa cttgacatat ctacaacgct tggcccagtt
    15841 gtaccgtcat atataggaaa ttcatagctt tttccatttc tattatcggt tatagtaacg
    15901 gaatttgaca ttttcgctcc ttttattgtt acttttatta attctaacaa aaaaggacga
    15961 ttatgagttt ttttattatt aaatttttaa gattttattt gcttttttga gtaaaaaagt
    16021 aactttcatt ttttagaatt agaaagaaat ttaatcatac tcataacaat aacagcctca
    16081 aataacgctg ttaaaataag tgctgaataa agcttctcat caataacctt gcccgaataa
    16141 cccagagtag ctgttgctat aagcaaggtt aaaggcatag aatgactaag accaaataaa
    16201 atcatatttt taaaaccaat tctttttaaa aaaacacttg cacataaaat tcttaaaccc
    16261 accataacaa acataagtaa aaatgcttgt aaaacgattt tataatctaa aatcatttta
    16321 agatcaaagg ttgaacctat atggataaaa aaaataggga tcaaaaaccc gtgtccaaaa
    16381 gtagaaagct tgtgctcaag atctttttta tgatcaaaaa aagtagctat aaatgaacct
    16441 gctataaaag aaccaagaac gatttcaagt tttgtaataa ccatagcaac aatgatcagt
    16501 ataaaaatgg ccatacaaaa tcttatatct ttttcatttt tatcttccca tggcataagc
    16561 acaactttaa gctgaggata ccaccaaaaa agcacaccaa gcattttaaa tccgagcaaa
    16621 caaagtccca aaaagatatt aagatataaa atactttgcg ctacatcaat aatacctgtt
    16681 ccttcgcgca aaaaagctcc cgctatagtc aaaagcacaa tagaaatcac ctcagctaaa
    16741 gtagccacta tcatagcaat atttagccaa taacactctt ttccaaaatc cttaaaaagc
    16801 aaagataaaa gccctacact catcacaggt ataatgataa caaatactaa agaaagtcca
    16861 aaaatccata ctataagaga agataaagcg taaagtaaaa aaatataaaa aaaacttttt
    16921 ttggcgactt ctttatccat attaaaaaag gctcttaaat ttacctccat acccgctata
    16981 aacattagat aataaaaacc tacattggct aaaagtgcaa aattttcact ttttcctatg
    17041 aaaccaaaat atgctattat tgcccctaaa ataatttcag tagctgaaag aggcaagcgt
    17101 aaaatttttg caatatgcgg agaaaaaagt aagcataaag ctataacaat aagaattttt
    17161 agatcaatta aaccttgtgg atcaatgaca ctctgatgca aaagtaaatc ccatttcttt
    17221 taattttatt atatcttgac ttggttcttc acctttagtg gttaaataat cccctataac
    17281 aatagcccca gcacctgctt gaaaaatttc atactgcctt tcttgcaata ccacttcacg
    17341 tccacctgca accatgatta cagtttgagg caaagcctct ttggtgtcac gcacgatttt
    17401 taaagcttca tcagcactaa gtcttggaac ttgtagtttt aaattttcat ttgctataaa
    17461 aaaattaata ggcgttgaaa aaggttgtaa ttcttgcaaa gattttctaa aacttagcct
    17521 atcttcttcg ctctcaccca taccataaat tccaccacaa caaagcataa gccctgcttc
    17581 tttagcgttt aaattggttt gaaatctact ttcccaagta tgtgtggtgc aaatttgtgg
    17641 aaaaaattcc ttagaacttt caagattgtg attataagaa aaaattcctg cttttttaag
    17701 ttctttgagt tgttccacgc ttgccatacc attacaggca attaaaagca aattaggtac
    17761 ttctttttgc acagccttgg cagcttcgca aacatactca agcttttcat catcaagccc
    17821 aagtcctgcc gtaaccaaac aaaaacccaa ggcttcattt ttctttgcca tttttgcttc
    17881 taaaacgatt tgtgaaagtt ctttacgacg atatttttga atatctgttt ttacatgagc
    17941 gctttgggtg cagtatttac agtcttctga acaatttcca ctggctatat ttgaaatagc
    18001 acaaagcatg atttgcattc taatccttca tttctttttt gattttacac tttaaacatt
    18061 ctaagaatgt acctttttta agctctttta tcactaaagt ttcgccacac tcttcgcatt
    18121 tttcttcact tggtttgtat ttgcttataa aattgcattt tggataagca ctacagccat
    18181 aaaatttacc acgttttgaa aagcgttcta cgatttcacc tttttgacaa cttggacaag
    18241 taatgcctgt accattagct ttagcttttg cggctgtatt ttcgctttcg tttttgcttt
    18301 cactttttaa atttcttgaa tacttgcatt ttgggaaatt taaacacgct acaaattctc
    18361 caaaacgccc ttttctaata gcaagctctc cgccacaatc aggacaactt tcgcctagtt
    18421 ttgtgacagt tttttgacta gctatttttg tttttccttc ttcgattttt ctcataaaag
    18481 gatagtaaaa ttcttttaaa gtttcttgcc aatctgcctt atcttctgcg atttcatcta
    18541 gggtattttc aaggtttgaa gtaaatttac tatctactat atcgctaaaa tttttctcaa
    18601 gcacttcggt tacattaaaa gcaacatcgc taggaatgag ttgtttttta tctattgtta
    18661 cataatcacg gcttgtaagt atagaaatgg ttggcgcata ggtagaaggg cgacctatgc
    18721 ctaaactttc aagttttttt acaagtcctg cttctgaata ccttgaaggt ggttcggtaa
    18781 aatgtgagtt catttctaaa ttttgcactt ttaaattttg gcctatttta aaatttggca
    18841 aaattttatc cttatccata tcaccataaa ctttataata tccatcaaaa aggatttttc
    18901 taccgcttat tttaaaaact gctctatcat tttttacaaa tacattttga gtttgagaga
    18961 tagcaggact catctgacag gctaaaaagc gattgtaaat aagtgtgtaa agttttaact
    19021 catctttgtc taaaaattta gccgcaattt ctggagtaaa acttaaattt gtagggcgta
    19081 tagcttcatg agcttcttga gcgcctttag tctttgtagt atatacattt gctttgcttg
    19141 gaagatagtc cttgccaaaa tttgcttgta tgaattttct tgcattttct actgcttctt
    19201 tggctaaatt taaactatcg gttctcatat aagtaataac ccccatcacg ccttcatggg
    19261 tatttactcc ttcatagagc ttttgagcta tcatcatggt ttttttaggg ttaaaaccaa
    19321 ggcgattgct ggcactttgc tgcaaggttg aagtcataaa aggaggaggc ggagcgattt
    19381 ttctttcttt gctttcaatg tcgcttatag cataagcttc atttttacaa gcctctagta
    19441 taagcttagc acgatctttg ttggtaatgg taagtttttc tatcttagct ttgtcaaact
    19501 caaccagttc tgcatctaaa tctttttgaa aaatcatatc aatactaaag tattctaggg
    19561 gtacaaaggc acgaatttct ttttcacgat cgactatgat ctttaaagcc gcactttgaa
    19621 cacgcccagc actaagtcct ctttgaattt tttgtcctaa taaagggctg agcttatacc
    19681 ctacaatgcg atctaaaaga cgtctggttt gctgagcatt tacagagtgc atgtttaatt
    19741 ttcttggatt ttttaaagca ttttctatag cgcttttagt gatttcatga aaaacaatgc
    19801 gtggtaaggt gttttcatct tttcctatag cttttgcaat atgataggct atagcctctc
    19861 cttctctatc ttcatccgtt gcaagataga cttctttggc atctttggct ttgcttttaa
    19921 gttctttaac taaggcgcta tgatcacttg tgattctata ctcagggata aattcatcat
    19981 cttctatttt aatcccaaag cttgatttag gcaaatctct aatatgtcct ttagaagcga
    20041 taacttcata atcttttccc aaaaaatttc ctatggtttt agcttttgca ggagattcta
    20101 ctatgattaa atttttcttc attttgcacc cttgttaaat aaaaagctga atttagct
//
LOCUS       DAPIWU010000017        19804 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.017, whole genome shotgun sequence.
ACCESSION   DAPIWU010000017 DAPIWU010000000
VERSION     DAPIWU010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19804)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19804)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19804
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.017"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(89..538)
                     /locus_tag="RJ285_000510"
     CDS             complement(89..538)
                     /locus_tag="RJ285_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383314.1"
                     /translation="MVIFCAALALLLFLGMIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEATKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(554..3799)
                     /gene="ccsA"
                     /locus_tag="RJ285_000511"
     CDS             complement(554..3799)
                     /gene="ccsA"
                     /locus_tag="RJ285_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDV7383315.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNKNKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAVANILEIPS
                     AKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWFAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWIRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVI
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLALFARRKRNFVGKL"
     gene            complement(3817..4512)
                     /locus_tag="RJ285_000512"
     CDS             complement(3817..4512)
                     /locus_tag="RJ285_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7383316.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(4499..5269)
                     /locus_tag="RJ285_000513"
     CDS             complement(4499..5269)
                     /locus_tag="RJ285_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7383317.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(5266..6318)
                     /locus_tag="RJ285_000514"
     CDS             complement(5266..6318)
                     /locus_tag="RJ285_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDV7383318.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYCEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(6318..7214)
                     /locus_tag="RJ285_000515"
     CDS             complement(6318..7214)
                     /locus_tag="RJ285_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDV7383319.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYSSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(7233..8342)
                     /locus_tag="RJ285_000516"
     CDS             complement(7233..8342)
                     /locus_tag="RJ285_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7383320.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(8364..9479)
                     /locus_tag="RJ285_000517"
     CDS             complement(8364..9479)
                     /locus_tag="RJ285_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7383321.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVGNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(9510..9944)
                     /locus_tag="RJ285_000518"
     CDS             complement(9510..9944)
                     /locus_tag="RJ285_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7383322.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(9953..10144)
                     /locus_tag="RJ285_000519"
     CDS             complement(9953..10144)
                     /locus_tag="RJ285_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HDV7383323.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(10197..10703)
                     /locus_tag="RJ285_000520"
     CDS             complement(10197..10703)
                     /locus_tag="RJ285_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HDV7383324.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(10712..11743)
                     /locus_tag="RJ285_000521"
     CDS             complement(10712..11743)
                     /locus_tag="RJ285_000521"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDV7383325.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAIVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(11743..13044)
                     /gene="flgR"
                     /locus_tag="RJ285_000522"
     CDS             complement(11743..13044)
                     /gene="flgR"
                     /locus_tag="RJ285_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HDV7383326.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYNFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(13101..13550)
                     /gene="flgQ"
                     /locus_tag="RJ285_000523"
     CDS             complement(13101..13550)
                     /gene="flgQ"
                     /locus_tag="RJ285_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HDV7383327.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(13526..14041)
                     /gene="flgP"
                     /locus_tag="RJ285_000524"
     CDS             complement(13526..14041)
                     /gene="flgP"
                     /locus_tag="RJ285_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HDV7383328.1"
                     /translation="MKKIYFMLAIAGIFAGCVSSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDQNFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(14110..16698)
                     /gene="gyrA"
                     /locus_tag="RJ285_000525"
     CDS             complement(14110..16698)
                     /gene="gyrA"
                     /locus_tag="RJ285_000525"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDV7383329.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            complement(16739..17314)
                     /locus_tag="RJ285_000526"
     CDS             complement(16739..17314)
                     /locus_tag="RJ285_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HDV7383330.1"
                     /translation="MRCINCGAFALLCFCDLCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNSVKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(17311..17955)
                     /locus_tag="RJ285_000527"
     CDS             complement(17311..17955)
                     /locus_tag="RJ285_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383331.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPD
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDATGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(18032..>19804)
                     /gene="lepA"
                     /locus_tag="RJ285_000528"
     CDS             complement(18032..>19804)
                     /gene="lepA"
                     /locus_tag="RJ285_000528"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDV7383332.1"
                     /translation="FSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMDTMDIEKER
                     GITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLVVDASQGVE
                     AQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAICVSAKTGV
                     GIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSIAKNDEVLV
                     MSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTITLVKNKAK
                     EAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSLALGFGFRV
                     GFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGEFIKIQNPSELPPVNKIDH
                     IKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPLNEIVMDFY
                     DKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQSKGRELVS
                     AMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRKLLEKQKEG
                     KKRMKAIGKVNLPQEAFLSVLKID"
BASE COUNT         6824 a         3806 c         2361 g         6813 t
ORIGIN      
        1 aagtatatgt tttttgtatt attaattttt caagtatgtt cttttggtta ttttaactat
       61 aaatcacagt cctcttgagc gcaccatatt atttatcttc tttaattttt cttttagcca
      121 atcccatatg ctcgtaagca tcaatttctt ttttgtaaga tccagaaatt ttcttaagtt
      181 ctttatttaa gtaacttact gtttgtgcac ttgcattaat atttgcagcc aaagcagaaa
      241 caaattctag tttctttttt gttgcttcat ctaattcttt agaagttttt gaaccaagtt
      301 tatgtgtctg cacataaagt ttggcaagtt cttttaattc aatatccgtt agcttaacat
      361 cggaagcagc aattatcatt ttatctaagt ctgtatcaaa ttttttagtc ttttcagcta
      421 catgctgctt ttggctagtt ttttgctttt taattgtttt tttgccatca cttgtaataa
      481 gataagcaat catgcctaaa aacaataaaa gcgctaaagc agcacaaaaa ataaccaaaa
      541 aaatatggct catttacagt ttgcctacaa aatttcgctt ccttcttgca aaaagagcta
      601 aaaccaccat caatgcaaat ccccaataaa cataattagg aatttgagcc gcttcgcctg
      661 cagcgtaaga atgaagtcct gttaaaaagt aatttactcc aaaataagtc ataataataa
      721 cccaataagc aaacatactc cataaagcaa acacaaattg attacaatat tttggaatca
      781 ttctaagatg taaaattgct gcataaacca aaatactaac taaagcccaa gtttccttag
      841 aatcccaact ccaatatctc ccccaacttt catttgccca aattgcacct aaaaaatttc
      901 ctacagtaag taaacaaagt ccaaaaatca ttgccatttc attaattctt gtagcctctg
      961 taatatttct caaaatatta agattatatt ttccatcttt cttaagaaaa cacattaaga
     1021 acaatgtaaa gataccaagt aaggcacaaa gtcctaaaaa tccataacta gcagtaataa
     1081 cagatacatg aatactaagc caataagaat taagcacagg aacaagattt gtaatttgcg
     1141 gattcatttc gcttaaatgt gcaaccatta atacaacacc ggataaaata gaagttaatg
     1201 acaaggctat aggacttttt ctagagaaaa atatacccga caaagacaat gcccaagcta
     1261 tatacaccat actttcatag ccattactcc atggagcatg acctgataaa taagcacgaa
     1321 gtccaagacc tactgtatga attacaaaag ctaaaacatt taaaacatat accactttaa
     1381 atataaaaga gatttttaaa ttcggtatga ccattttaga aaaaacaaga atcaaaagta
     1441 aaaaacccgc aattaaatat acaggagcga gtttaacgaa aatttcagcc ttattagaaa
     1501 aaatttccat ttcaaccttg gttttactag gcatgacttt atatcctatt ttttcttgat
     1561 attctttgat aaatttcaag ccttcatcag ctctaatcca attaccatct ttaaaagcat
     1621 tttccacggc actaaaataa ttctgtatta aagccaaaac aatatgccct tcatccccct
     1681 taagagtagt tacagcagaa aaaggtgcaa accaaacatt atttggatta ttttgaacag
     1741 gaataaattt aaataattca ccactaaaaa ctaaatttac aacattagct ctttcatcta
     1801 gttttataat ttccttatca aaaactcctc ttgcatttgg gtttttacga tttgcatttt
     1861 caacatattt ttgaagttta tatcggttat tctcatcaaa gaaatcttta taagaaatat
     1921 atttagcact aggaatttct aaaatatttg caacagcatc acgaactgct tgattttgtg
     1981 gcattaaaat aaaaggttcc atttgccatt tatctacatc aacgagcatg gaaagcataa
     2041 cagcgttaga attttgaccc ttatagctat cactttgatg aattttttct aaaatttctc
     2101 ttgatagcgt atcaaaaggc accattcttc catctgctga tttttgaact attaaagtgg
     2161 caagagcttt agcatgatta gtatttacca caggtaaggt cgaatttaaa tcttgagcaa
     2221 aagtcttttc agaaccaaaa gataacaata aaataaaaat aatcacactt gtatgtttta
     2281 aagtgtcttt attaattaat cttgccaaag ttctaaatct agaatgtgga tttaaaaaat
     2341 tcataaacat tccaagacaa agcagaaaat aacctatata agttggtatt ttgcccggat
     2401 ctttatttac agataaaaca gtcccttttt catcttgatc ataagaactt tgataaaatc
     2461 tatagccatc ataatctaaa acattattca taaaaattct ataatcaaaa ttttcattat
     2521 tattttttac ggtaatttca cttgcataag aagctggaga catagaacct ggataacgat
     2581 ctaatacaaa atctcttaaa taaatatcaa aaggcaattg ttcataagaa agcgcccaag
     2641 aaataaagaa tttttgatct gcaagttcta tcataatagg tttattatat tcaaaaatat
     2701 aaaattcttt actttcattt ttatagctta attctaattt taaagcatta gagccagtta
     2761 attctaagtt tttattctta ttgcttaagg caaaatcttt aaaatgcaat aataaagaat
     2821 ttttccaatt ttgaggctcg ccaaaagtag aaatcaacat agttctaccc acttctaacc
     2881 aagcagattt aaaccataac caaaaacttt catcttgagg tctattggag ccttctaaag
     2941 cttcttgcgc atgcaaagaa gcagctttaa ctacaaagct gatatcatta atttcataga
     3001 gtcttctttc cttagcattt gccttttctc caattttaag gtctaaattt tgtccatcta
     3061 gcatacttag aaaatgtaag ttttcacttg aacttaaagt taaattttca tcaattttta
     3121 caaaaggtgc tttaacatta tcattcataa aagcaaagtt aaccccttct atattcttaa
     3181 cttcaccttt ttcaaattta acatcaacac cttgagatcc tttttgagaa agcatcaaaa
     3241 ccaataaagg atcagaatta ttattttctt tataagtata atgagcattt aagattaaat
     3301 ctttatattt taatacagct tgatcatcac ctaaattaag ttttagttta aaagaattag
     3361 caaaaggcaa atttcctata taacgatcat taaccgcact atagcgttct ccatctttta
     3421 tagcagaaat acgcaaagaa gtcttagaac tttctataag tgaattttga gtatgctctc
     3481 taataggtaa aataccttca aaaccagcat atcttgtcat tgcagaaccc actaaaataa
     3541 ataaaaaaga aatatgaaaa atcattaaag gtaatttttt aagcccaaac attttataac
     3601 gaaacatccc gcatagtaaa ttaataccaa gtaaaagttg tatatattca aaccaaaaag
     3661 tatcataaac cattgcccaa gccgtaggag ttccataagc actttcaata aaagttgcca
     3721 aagcacaaaa aagcgcaaaa agcaaaaaca atacaaccga aactcttaaa tcccctatgc
     3781 tttttattat atttttcatt ctttttcctt taaattttaa agccctaaat atttctttct
     3841 aatctcatca tcacctatta aatttttagc ctcgttttcc attacaatgc gaccattttc
     3901 caaaacataa gcataatcac ttatttttaa tgcagaataa gcattttgct ctaccaaaag
     3961 aatagttata ccctcttctt ttaaacgcac aataatatca aaaacttcac ccacaatctt
     4021 tggagcaagt cccaaagaag gctcatccaa catcaaaagt tttggttcac tcattaaagc
     4081 ccttgaaatc gcaagcattt gcgcttcccc tccactcaat gttccagcta aagcatgctt
     4141 tttacttgca agtcttggaa aaagtttata catttgctct cttaaatgct cataattttc
     4201 agcattatta aaagcaccta tttttaaatt ttcctctacg cttaaattaa taaaaacacg
     4261 ccttccttca ggaactaaag ctataccttt ttgaactaaa gtatgagtta aatgcctttt
     4321 agtatcataa cctaagaaat taacctcacc agttctttta actgagttta aaagcgcatt
     4381 taaagttgaa gttttacctg ctccatttga acctataaga gaaacaatat gacctgtttc
     4441 cactttaaaa tcaatccctt taacagcttc aattaatcca taataaacat gcaaatcttt
     4501 aactattagc atcaaaatcc cctaaatacg cagcaattac ttctttatga tttacagcat
     4561 cgcaaagttt accttcaaaa attgtttttc cataatcaag taccaatacg cgatcacaca
     4621 atttatttac aaatttcata tcatgttcta taagcaaaac gctaatttta taatcttttc
     4681 gtaatttaaa aatgagctca gcaagttcat cactctcaga gctattcatc ccagcggctg
     4741 gctcatcaag caataataat cttggttgag tagccattgc tcttgcaatc tcaacttttc
     4801 tttgttgtcc ataactcaag ctagtagcct tttcataggc aaattctgca ataccaagtt
     4861 cttctaatat tgcataagcc ttctctttaa atacttgttc tatttttcca aaacgcccta
     4921 aatgcaaaaa ggcttcaaaa atattatatt tcatttgttt attaaaacca ataagaacat
     4981 tttcaagcac attcatgctt gaaaaaagcc taatattttg aaatgttcta gctattccta
     5041 aatgcacaat cttatgaggt tttaagtgat caattctttc tcctagaaat tcaaccgaac
     5101 ctgaactagg tttatagtta cctgttataa tattaaaaag agttgttttg ccagccccat
     5161 taggtccaat taaagcaaaa atttcaccct cattgatttt aaaagaagtt tcattaatag
     5221 ccttaacact accaaaactt tttgaaattt gttttaattc caaaatcatt ttttgctcct
     5281 tttaaaacgc tttttaatcc ctctaatcac atcactcaac tcacaataac ccattatgcc
     5341 ttttcttgca aaaagcatta ctaaaatcag aacaatagaa aaaacaacca ttctaagccc
     5401 tggcgttgat tggatatcaa gatttaaaga atctattttt atatttaact catctaaaaa
     5461 tctaagccac tcacttccac caataaccaa tatcgcacct ataatagcac ctgtagtaga
     5521 accaagtcca cctaaaacaa taataatcaa aagctgaaaa gtaagtaaaa aatcaaattg
     5581 agttggagat acggtagtca acagacaagc taaaagtccg ccacctacac cttctaaaaa
     5641 tgctgaagtg ctaaaagcta aagtttttat ccaaaaagta tttattccca tagcgcttgc
     5701 agcatcttca tcatctctta tagccttcat tgcacgacca tatttagaat aaactatatt
     5761 taaaattaaa ataaccgcta caatagcaat accacctgtc caatagatcg tggaaaattg
     5821 tggaatatct accagccctc ttgagccatt agtaatagaa ggaaaattaa tagcagctat
     5881 tttaataatt attccaaagc ctaaagttac aatagccaaa taatcccctc tcacgcgaaa
     5941 tacagcaaaa gccaaaatca gggcaagtaa agatgaacaa attccagcca caattaaagc
     6001 tagaataaag gaatttgaat ggatagctaa aataaaagaa ctaggaccat ctaaaaaaaa
     6061 ctgatcattt tttgcatcag cacttaaaag aactaaagca gccgcataag ctccaatcgc
     6121 aacaaatcca ttgggttcta gtgaaaattg tccagttaca ccattaataa gattgtaact
     6181 cacagccaaa ataataaaaa tagcaatttg attaacaatg tttaatccat aatccccaaa
     6241 aatataagga gaaatgaaaa taaaaataat tgaagcaatt aaaaagatta aatgtgaaac
     6301 cttaattcta accatcatta aaacctactc ttttcaaaat ttatacctaa aattcccgta
     6361 ggcctaaata acaatataaa caccaaaaaa ataaaagcaa atgcatcttt aaagcctgat
     6421 aaatctggaa aaaaagccac aacaacaact tcagtaaatc ctataataag tccacccaaa
     6481 actgcaccta ctacagaacc tatacctcct aaaactgcag cagcaaaagc ttttaaacct
     6541 attaaagttc ccatagtagg ttcaacagag taataatttg cagcccaaaa aacaccccca
     6601 actgctgcca aagctgaacc tagggcaaaa actatagcaa taatacgatt tgcatctata
     6661 cccattaaat ttactgtttg tatatcaaat gccaaagcac gaatagctat accatatttg
     6721 cttttataca aaatccataa cactgctatt aaaataacaa atgtaagagc aggaaccatt
     6781 aaagaactat aagttgttat cactccacca aaattaacac tttcctcaaa ataacttggc
     6841 ggtgtaaaag ttctaggtgt tgaagtaaaa agcatattaa aaagattttg caagaaaaaa
     6901 ctaataccga ttgctgtaat caacaatgaa attctaggag cctgtcttaa aggtttataa
     6961 gcgattctat ctgtagctat tccaacacaa gcagcaaaaa tcattgctaa agacaaagct
     7021 cctagaaaag gaacatttag attagtcatg caaaaaagag ccgcataagc accaaccatc
     7081 ataatatcgc cgtgagcaaa attaataagt cttaacacgc cataaaccat agtatagcca
     7141 acagcaataa gggcatacat actgcctaaa ctaagtccat taacaagttg ttgtaaaaat
     7201 aaagtagaat ccataatctt tctatttttc ctttaaggat tgataatatc tttataattt
     7261 tgcttctgat ttttaatttc tttaaccact acagaacgag ttgcatttcc tgtttgatca
     7321 atactgataa caccagaaac gccttgataa tttttagttt ggtgaatttt ttcattgaca
     7381 cacttactag taagattttc aacgcaagca ttcatagcat ttagcattac aaaatacgca
     7441 tcagcaccca tagctgaaaa atttggaact tcttttgttc ccttagcttt ttcataaaca
     7501 ctgataaatt ctttgcttaa ttttgtagtt ggattattag catcaaaact atctgtgaaa
     7561 atataaccct cgcttgcatc tccagctaaa ctaataaaag tttgatcagc aactccatct
     7621 gcagaaccca taggaatatt taaacctgcg agttttgatt gtcttgcaaa taaagaagct
     7681 tcactataat aaagcggtaa aaaaataaat tctggattta aacttttaac ttgagctaca
     7741 atagctctaa aatctttatc acctgaatta actcttaaaa ttctaagaat ttgaccacca
     7801 ttagacttgt actgtttttc aaaagctttt gctaaaccta aggaatagtc agtgctttga
     7861 tctactacaa taacagcact tttgtaatta agttttgaaa aaacatattt tgctaaagat
     7921 gaaccttgaa aactatccat aaaacatact cgagaagaat atattttttt atcaagcaat
     7981 ctatcaccag ttgcagcagg agcgatcaat ggaattttat tatcttctgc tacgcgcata
     8041 acttgcaatg tattagcagt aaccatttcc cctataaggc ctataacttt atcttgagaa
     8101 actaaacgat ttgctccact cgaagattct aatttatcac ctttagtatc aataatagca
     8161 agagaaacct tatctccatt acttaaagct gattgcattg aatttgcaag tttaatccct
     8221 tctagtgcgc tttgtccata tgctgcagta gctccgctaa gcggtaaaac aactcctatt
     8281 ttgacttccg cagcacttaa acttaaactt agaatacttg ctaaaattaa actttttttc
     8341 attctctacc tttattttag taattatgga tttataattg ttttataatt ttgtttttga
     8401 ttttgaattt ctttaatcac aacagaacga atggcattac cgctttcatc tatgctaatc
     8461 acaccaccaa cagcttgaaa atctttagtt tgatgaattt tgctattaat acattcgctg
     8521 ctaagattac caacgcaagc attcatagca tttaacatta caaaatacgc atcagccccc
     8581 atagccgaaa atgctggaag ttcttttgtt cctttaactt tctcataagc tgcaacaaaa
     8641 tcttttccta attgtgtaga tggattgtta taatcaaaac tatcagtgaa aattactcca
     8701 ttaacagcac ttccgccaag atctataaaa gtttgattgt taacaccatc tcctgctgct
     8761 aaaagtttat caaaaccaat ttgtcttgct tgtctcgcaa ttaaagcagc ttcaggatga
     8821 taaataggca tataaacaaa atcaggattt aaactcttaa gttgagaaac cacagctcta
     8881 aaatctttat ctcctgaatt aataacaagt ttttttataa ttttcccacc attattctta
     8941 aaagaatttt caaaagctct tgccaaacct aaagaataaa cattgctttg atctatgatg
     9001 ataacagcat ttttaagtcc taaatcctta gatacataag tagcaaattt atctccttga
     9061 aaactatctt taaaacaaac tctacttgca tatttctttt tatctagcaa tttatctcca
     9121 gatgccactg gagctattag gggaattttt ttctcttctg ctatagaaat agcttgaatg
     9181 gtatttggag ttgtagcttc accaataatc ccaaggactt tatctgttgc tattaaacga
     9241 ttaactccat ttgaagtttc aagcttatct ccttttgtat ctattgtgat aagtttaata
     9301 acatctccat ttgaaagttt tggctgtagc ttattagcca gttcaattcc gttaaaaaca
     9361 tcttgcccat aagctgccac agttccagtt aaaggtaaaa ctactcctat attaatatcc
     9421 ttagcatata agcaatttac catagttaaa acacttaaag ttaaagttag ttttttcata
     9481 gtattccttt taattatagt ttttacattt tattttagaa atatattatg ttttgttttt
     9541 tgcgcaggtt cttcttcaag aagatctttt acttgcaaat caagcgcaaa atttccacct
     9601 ttaatataag caataatatt atctatatcc tcgtggctta aatttctagc ataaaaagcc
     9661 atttgagaag ctgttgtaga actgctacta tcaagagtat aacctatcaa agctccttta
     9721 atatcctcag gagacatatc ttttaaaatt ctagatccta taacactctt ttcagcatta
     9781 tctccatggc aagtattgca tttattttga aaatacaaag ccttcgcttt ttccatatca
     9841 tattgcttat ttgcatcaaa ggtataagta aaaaatgatt tcaagttaat accaaaaagc
     9901 gcaacaacaa atattgaact aataaacaac cagcgtgcaa tcatgatttt ccttatttta
     9961 ttgtaatttc tgtttgtgtt ttattttgat atctatgtgt ttttttgttg tatttttttt
    10021 cttttttaat atcatagcga taacgaacag tccctgaaac ttctatatct ttaaagactt
    10081 catctaacgg agctgcaaaa acaaaatgat ttaaaatcat accaattaaa aatatttttt
    10141 tcatttttat tctttaaaca caaaaaaacg attatatcaa aaaaagataa tccttgttaa
    10201 tgaccacctt tgtgtaaaaa ataaagtcct acacaaagag ctaaaatcga tccagcaaga
    10261 aaagccatat ccacaggagt agcaaatttc atctgtaaaa ccctttgaaa gaaatttacc
    10321 actaagacca taatgataac ttttgcaagc ttgtctttta attgatctaa gctatgcacc
    10381 tctaaaacct tgctttgttt tgtttgttta aattcttcta tttcgctgat aaaaagctca
    10441 taaactccaa aagaaaaaat aaacaaaact aaagccataa gataaagatc aacagctcct
    10501 ataattaaag ccaccacatc ctcatgcaaa tccacattag aacctgcatc aaaaaaataa
    10561 ttataagtat aaaatataac ttttaaaaca tcataacttg caataaaaaa caatacaaaa
    10621 gctccaatta aaccaaaaat tacgggtaaa attgtaacaa tacgacttct aacaagtaaa
    10681 gattcaaata ttttctctaa catttttttc cttatttatt ttttaattct aaccattttt
    10741 gcgcaatacg cacagcattt gttgcagcac ctacacgaat ttgatccgcc acacaccaaa
    10801 gatggagtat ttttttatca tacacatcag cacgaattct tcctacataa gtttcattag
    10861 tatcgctagt cattaagggc atagggtatt ttttattttt aggatcatct atgacaataa
    10921 cacttggtgc tttttctaaa atttctttag ctttttttac atctatttct ttttcaaaat
    10981 gcatagtaat ggcttcgcta tgacttctta aaacaggcac tcttacacaa gttgccgaaa
    11041 cttctaaatt tttatgtaaa attttttgag tttcattgac cattttaagt tcttctttag
    11101 tgtaatcatt atccataaaa acatcaattt gtggaataag attaagtgcc aaagtataag
    11161 gaaaagtttg aggttcaaat tcatcaagtt taaaagcaaa aaaactttgc atggcttcaa
    11221 ccaattcttg cattccttct tttcccgctc cacttgcagc ctgataggta cttacatcaa
    11281 cacgctttaa attaaatgca tcatttaaag gttttaaaac ttgcaccatt tgtatagtag
    11341 aacaatttgg attagcaata atccctgttt ttttccaatc tttaatatcc tcaggattgc
    11401 attcaggaac caccaaagga acatcttttt ccattctaaa atgacttgta ttatcaatta
    11461 caatagcacc tgattctact gcaaatttag catatttttc actcacactt ccacctgcgc
    11521 taaaaaaagc aatatcaata ggattttctt taaatacatt ttcggtaagt tctttgactt
    11581 tataagcttt gcctttaaat tctacttcac tacctacact ttttgcactt gctaaaggta
    11641 aaatactttc cactgggaaa tcaagttcat ctaaaacatt taaaagctct tccccaaccg
    11701 caccagtagc acccacaatg gctatttttt gtttttttga cattacttat cctttatttg
    11761 atatttttta attttttcat ttaaaatttt tatatccata cctaaaattt gagaagcttg
    11821 atccttgtca taatctacac ttaaaagaac ttcacaaatc aattcttttt ctaaattctt
    11881 tacatctttt tttatacttc tagcttctaa gaacaaatct tcacttgaaa tttcatcatt
    11941 ttcacttaaa atacaagctc tttgtacaac ggatattaat tctctaatat taccaggaaa
    12001 attatattca agtaaagcat ttttagcttc ttgactgagc tgtttttcct taaaatcata
    12061 ttctttacaa gtatcttcta aaaccttttg agctatacct aaaatttctt ctttacgctc
    12121 tcttaaaggc gggatattaa taggaacagt gtttaaacga taatataaat ctgaacgaaa
    12181 ttcgccattt tttatttttt catccaaatt tgcattagtt gcactgataa ttcttacatc
    12241 tattttgatg ctttttgtac ttccaagtcg cgtaatttct ttttcttgca aagctcttaa
    12301 aagtttggct tgaatttcat aaggcatttc gccaatttca tctaaaaata aagtgccctc
    12361 attagccatt tcaaaaagcc ctattttagt tgcattagca tcagtaaaag cacctttttc
    12421 aaaaccaaaa agctcacttt caatcaaatt tgcaggaatg gctgccatat taatagcaac
    12481 aaaaggctta ttagagcgtt tagaatgagt gtgaatataa cgagaaaata cctcttttcc
    12541 tactccactc tctccaaaaa acattacaga ggcatcagtt ttagccgctt tttgacttaa
    12601 atttaatgtt ttttctaaat taggagaagt tgaaaaaaaa tctttatttt cttctttttt
    12661 ttcatttttt ttgctttttt tatcggctgt tttttctctt atgattttag cacgcttaat
    12721 agcctcgact aaagtatcaa catcaaaagg cttggttaaa aaatctttta ctcccaaacg
    12781 aaccgcttct atagcacggc ttaaagtagc atttcctgtc ataataataa aatcatattt
    12841 attttcacag gctttaacaa attctatacc atcaattcct ggcatattaa tatctgtaat
    12901 aatcaaatct gtattctcat ctattttttt taaagcttca gtagcagatt tataagattt
    12961 aatattaaat tcttcatact ctgctaatgc aatttctaag gatttgcgca tattaatatc
    13021 atcttctact atgactaaat tcatcctaag ccttttaaaa aatttctact atagtatcca
    13081 atttgcgctt aattttgaat ttactttttt ttaagataat aaattatcgc attttgttcg
    13141 ccaaattcca cggtaaaacg caagggtaaa attttaacat aagtttcact ttgagcacgt
    13201 aataagtcag tattaacaat atccttaaca ctgattctag cccctataaa gcaatcgctt
    13261 aactcatctt tatgagaatt taaaaaatta aatttaattg tttttggcat attatcatca
    13321 atcaatccta aagaagttcg aggtaaaact tttaaatctt gatcactata agaaatttca
    13381 catacccatt gttcttcaac attttcgctt tgcgtcattg ctaaggataa attttgattt
    13441 tgatgaaaga gaatgaaatt tttactagaa agctctgccc aaaaaataaa ttcatcttgg
    13501 gcaaaaagct taaagctaag aaagattaat aagcaaacaa ttctttccac ttgtctgcat
    13561 cgattttaag ttctaagttt accctataaa gcccttgatt aaaattctga tcaataatac
    13621 ttgcattttt tatcaaacca tttacttgcg cagtaatagt tgaacttcta agcattgcat
    13681 cttttacggt gtctttacca ttcactttca caccataaag cttacttgca agctgtctgt
    13741 aagcatctgt aatcgctgct ctttttgcta aagctagggc ttgagcagta gaaactgtat
    13801 tcatcggagc aatcccttca ccaactgctg taaaactaag ttccgtttcg ctagcatctg
    13861 gagccaacat tttttcttct ctgataatat cacgcacatc atctttatcg actttttgca
    13921 cgataacatc ttgagatggg gcagtgctat ttgcacttga atttttagtt gcactgtttg
    13981 cacttgatac acaaccagcg aaaattcctg ctattgctag cataaaataa atttttttca
    14041 tttttacacc ttcaaaatat tgtaattagt aaaaaataaa aagcaataag cgttccaact
    14101 ttaaacttat tacaaatcta aaccaaagtt ttcatcgctt aactcatcct catcattttc
    14161 ctctttagga cacttagcga tgctaaccac ctcgtcattt tccacattaa ctacaatgac
    14221 accactcgta ttacgccctg cttttctaat gctttgcata tcaacacgta tcatcttgcc
    14281 tgaacttgta agagccatca aatccatagt ttcatctact ataactacgc taataagatc
    14341 tttggttttt tctgtaagtt tcatacaaat tacaccctta ccacctctgc tttgcaatct
    14401 atattctcca gcatttgtgc gttttcctat accttttgca cttatgctta aaatttcttg
    14461 ctcatcattt tctataacaa ctgcacctac taattcgtca tttttctctt taaacttaat
    14521 agccgtcacc ccacgactta cacggccgat ttcacgcact ttagcaagtg ggaatttgat
    14581 acacatacct tttttggtta ctgcaaagag cattttacct tgtgtgctta cactttcttc
    14641 attttcaaga ttttcatcat ctaaattttc aatttcttga ttttctaaat tttcttcacc
    14701 accagtggca aaaatttcat cttcatctct ttgaacaata atagcagtta ccaactcatc
    14761 attttcatcc aagttgatcg ctctaactcc cacacttctg atattttgat attcactcaa
    14821 atttgtacgc tttacaatac catttttagt aaagaaacat aaagatttac tctcatcaaa
    14881 atccgtggtt ggaataatag ccatgatttt ttcttcagct tgtaaattaa taagatttac
    14941 cactgctttt cctttagccg ttcttgagcc ttcaggaatt ttataaactt taagccaata
    15001 aagctgtcca cgatctgtta caaacataag tgtatcatgt gtatttgccg taaagaaact
    15061 ttctataaaa tcatcatcat aagtcgtaac ggctaatttt ccttttccgc ctcgtttttg
    15121 cttttcatat tgtttactag gcacacgctt aatataacca cgatgcgtaa tagttacaac
    15181 catattttca ttaggaatca aatcttcaat atcaatatca tcataatcat cttcaatttg
    15241 agtaatacgt ggcacatcaa atttacttct aatttctttt aattcatcgc gaattaaatt
    15301 ttcaagcaag gtttcacttt ttaaaatttc ttcaagtctt gcaatttctt tcattaattc
    15361 tgcaagttca ttttcgattt tttctctttc aagtcctgtt aaacgaccaa gtttcatatc
    15421 taaaatagca ttggcttgaa gctcactaag accaaattta gctaccaaag aatctcttgc
    15481 ggtattatta tcagaactat ttttaattaa agcaatcact tcatctatat tatcaagtgc
    15541 aattttaaga ccttctaaaa tatgagctct tgctcttgcc ttttgaagtt caaaaatcgt
    15601 tcttctaata ataactgttt ttctatgggt taagaaaaga tttaaaagtt ctaacaaaga
    15661 gaaaatttta ggttctttat tgtgaattgc caacataatc acaccaaaag tactttccat
    15721 agtagtagat ttaaatagat tgtttaaaac aatttcactc atagcctcac gtttaagctc
    15781 tataacaacg cggattcctt ctttattgct ctcatctctt acttcagata ttccttcaat
    15841 ttgcttttct ttaacaagct ctgcaatctg ctctataagc ctagctttat tggtttgata
    15901 aggaagctca tctataacaa taacatcttt atttgtcttt ttttcaatat gagttttagc
    15961 gcgcactttc acgcgaccac gccctgtgcg ataagcttct ataatacctt ttttaccata
    16021 aattattcca cctgttggaa aatctggacc tttgataaac tgcataatct cttctaagct
    16081 tgcatcttta ctatcaagca aatataaaag tccatctatc aactcattta aactatgagg
    16141 tgggatgttt gtcgccatac ctacagctat accacttgaa ccatttaata ataaatttgg
    16201 aaccctagaa ggtaagacat caggttcact ttctgaacca tcataatttg gaacaaaatc
    16261 gaccgtatct ttatctatat cttttaaaag ctcatgagaa agtttactca tttttgcttc
    16321 agtataacgc atcgcagcag cgctatcacc atctatagat ccaaagttgc cttgtcctgt
    16381 aatacttgga tatctcatag aaaaatcttg agccattcta accaaagcat cataaactgc
    16441 tgtatctcca tgtggatgat aacgacctat aacagcaccc actatacggg ctgatttgac
    16501 aaaatctgtt ctactttttg cctcatcatt ttgcatagca tataaaattc ttctatgaac
    16561 aggctttaaa ccatctcttg cgtcaggcaa agcacgacct ataataacac tcatagaata
    16621 gtctaaataa ctacttttta tagaattttc tatatctaca agttcaatat cagaatcttt
    16681 gctaaaaata ttctccataa aaatccttct attagttcaa agttttgatt atagcatatt
    16741 aaacttttgc atcagctaaa acaagagcaa aaagtacaga aattttattt tcttctaaaa
    16801 cttttttagc ttccaaaagg ctagaaccag ttgttacaat atcatctact aaaattacag
    16861 gttcgtgaat ggtttttaag agtttgtaat ttcttttatg tttttgacga aattctaaac
    16921 tttttccaga atatttcaca gaattttgtg cttttaaaac attaaaaaca ggttttacaa
    16981 attttgtttt aagatatcta gctaaaatag cagaatgtga ataaagcata tcttcaacct
    17041 tatcatctaa agctataaca ttaattgtca ttctaggatc aaaaaaatct ttaaattttg
    17101 caaaacttaa tttagcaagc attttataaa caaaataacc ataaaaataa tgtttagagt
    17161 gaagcaagtg ttgtatttca tggtatttat aaaaagaata aactttgaaa ttattatcaa
    17221 gctttcttac atttaaggaa aattcagaaa gctctagctc acataaatca caaaagcaga
    17281 gcagagcaaa agctccgcaa tttatacacc tcaaagttca gagattaaac tagctgcttt
    17341 atttgccatt tgttttatta acaaatgagt ataaaaagtt gtttctttta gatcatcaaa
    17401 accttgtaca tcttgcttgg tgcggattgt aaatttctta tttttgttta tatcgctaac
    17461 ttgtaaaact cctactagtt ttgaatgtaa tcctgtagca tcttgagttg ctccataaga
    17521 tataaattct aaatcaatct tactcacata aggtgaattt tgatcgttat tgtcaagcac
    17581 aactattcct ctagcttcaa gttcttgctt taaataagta taaaataccg cattaaaatt
    17641 cacatcaaca aataactttt tccctttagc atttaaaact ttttgccctt cttttaaatc
    17701 ataaaatcta tgcaaataaa ccttttttaa agcaatacca gtgtctaaag tgcgtttatt
    17761 ggcacaacat tgaattccaa catcgctaat gtataaaagc cctttaatct ttgcttcaaa
    17821 gccatcagga ctttcacaag aactgcattg agaattttta gaaatttgat taacttgagc
    17881 aaaagtatct tgtttagttg cacaagcact caaaaataaa ataggcacta taaaaatcaa
    17941 aaatttttta aacatttttt ctccttagaa aattatttta aaattgtatt aaaaatacaa
    18001 gcaaatttca agccaagttt taaatttatc atcaatctat ctttaaaaca ctcaaaaaag
    18061 cctcttgagg taaatttacc ttacctatag ctttcattct ttttttacct tctttttgct
    18121 tttctaaaag ctttcttttt ctagtaatat ccccaccata acattttgct gtcacatttt
    18181 tacccatgga tttaacagtt tctcttgcga tgattttatt tccaatactt gcttgaatgg
    18241 ccacttcaaa aagctgtcta ggaactattt ctttcatagc actaacaagt tctcttcctt
    18301 tactttgcgc tttttcatta ggcacgataa tgcttagcgc atcaacattt tcacccgcta
    18361 ccttaatatc aagttttacc aaatccccta ctctaaattc tataggctca taatcaaaac
    18421 tcgcataacc ttttgttaag gactttaatt tatcataaaa atccatcaca atctcattta
    18481 aaggcacatc atattctagc aaaacacgct caggtgtgat atagtccatt ttaacctgta
    18541 ctcctctttt gcgatttaaa agagtgatta aattccctaa aaattcactt ggagtaatga
    18601 tagtagcttt aacataaggc tcttttatat gatcgatttt attaacagga ggaagctcgc
    18661 taggattttg aattttaata aactctccat cggtttgata aatttcataa gtcacagttg
    18721 gagctgtagc aatcaaatca agattaaatt ctctctcaag cctttctttg ataacttcca
    18781 tatgtaaaag ccctaaaaat cctaccctaa aaccaaagcc taaggccaaa gaagtttcag
    18841 gctcataagt aatagaacta tcattaagct ttaatttatc caaagcatct cttaaatctt
    18901 caaatttatc cgtttctata ggataaagtc ccgcaaatac aaaagcttta gccttttcaa
    18961 aaccacctat ggcttcttta gctttgtttt ttaccaaagt gatggtatcg cctacttgta
    19021 catcacctac ggttttaagc cctaaaacca ccacacctac ttcgcctgat tgtaaagatt
    19081 gagttttaat tggacttaaa gggtggggat aaaaaagatc ttgaactata tgttttttat
    19141 ccgtactcat gactaaaact tcatcgtttt tagcaatact tccttcataa atcctaacca
    19201 aagccaaagc acccaaataa ttatcaaacc aagaatcata aattaaagcc ttagtaggag
    19261 cttcatcatc tgtttttggt gcagggattt tagtaataat tgtttctata agctctttta
    19321 tacccactcc tgtttttgca ctcacacaaa ttgcatcttt gcaatctata cctataatat
    19381 gctcgatttc atgctttact ttctcaacat cagcattagg taaatcgatt ttattaatca
    19441 caggaatgat ttcaagatta ttttcaagcg ctatataaac attagctata gtctgtgctt
    19501 caacaccttg agaagcatct actacaagca aagctccttc acaacttgcc aaagaacgac
    19561 tcacttcata agaaaaatcc acatggccag gagtatcaat aagatttaaa acaaaatttt
    19621 cattattaaa tttataattt aaacgcactg attgtgcttt tatggtgata ccacgctctt
    19681 tttctatatc catagtatcc ataacttgtg aactcatctg cctatcgcta atagcaccac
    19741 actcactaat aatcctatct gcaagagtag attttccatg atctatatga gctataatag
    19801 aaaa
//
LOCUS       DAPIWU010000018        19315 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.018, whole genome shotgun sequence.
ACCESSION   DAPIWU010000018 DAPIWU010000000
VERSION     DAPIWU010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19315
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.018"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            24..1271
                     /gene="cmeD"
                     /locus_tag="RJ285_000529"
     CDS             24..1271
                     /gene="cmeD"
                     /locus_tag="RJ285_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_075443138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HDV7383333.1"
                     /translation="MFLALYPLAMLASNLHEFIALSQNNESYLIKQMQSEQANLDKEQ
                     AFRNYLPSLSLSSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREANLRVLESRE
                     KLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERLQKFYDAGLS
                     PKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFLENPQQEKSQ
                     NYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAPFANLADQFL
                     EKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNKEELNYLDKS
                     LKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKAQSDLELAKN
                     EFEITKANYYFNAGIDLNSKVKE"
     gene            1268..2008
                     /gene="cmeE"
                     /locus_tag="RJ285_000530"
     CDS             1268..2008
                     /gene="cmeE"
                     /locus_tag="RJ285_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HDV7383334.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNRAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            2011..5028
                     /gene="cmeF"
                     /locus_tag="RJ285_000531"
     CDS             2011..5028
                     /gene="cmeF"
                     /locus_tag="RJ285_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HDV7383335.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDIANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLGK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKN
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(5052..5858)
                     /locus_tag="RJ285_000532"
     CDS             complement(5052..5858)
                     /locus_tag="RJ285_000532"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7383336.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(5859..6578)
                     /locus_tag="RJ285_000533"
     CDS             complement(5859..6578)
                     /locus_tag="RJ285_000533"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HDV7383337.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(6578..6829)
                     /locus_tag="RJ285_000534"
     CDS             complement(6578..6829)
                     /locus_tag="RJ285_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383338.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(6833..8278)
                     /locus_tag="RJ285_000535"
     CDS             complement(6833..8278)
                     /locus_tag="RJ285_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HDV7383339.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            8418..9581
                     /gene="ftsW"
                     /locus_tag="RJ285_000536"
     CDS             8418..9581
                     /gene="ftsW"
                     /locus_tag="RJ285_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDV7383340.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            9578..10606
                     /gene="murG"
                     /locus_tag="RJ285_000537"
     CDS             9578..10606
                     /gene="murG"
                     /locus_tag="RJ285_000537"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDV7383341.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(10577..11740)
                     /locus_tag="RJ285_000538"
     CDS             complement(10577..11740)
                     /locus_tag="RJ285_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HDV7383342.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGSISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIMGIALAIPLLSVFDLAGA
                     MFFWAIFSFVALVVYYPQAKNGRFFRIKKKAHKKINLFINFTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGMLFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALS
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(11748..12599)
                     /locus_tag="RJ285_000539"
     CDS             complement(11748..12599)
                     /locus_tag="RJ285_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7383343.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFITGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
     gene            complement(12662..13552)
                     /locus_tag="RJ285_000540"
     CDS             complement(12662..13552)
                     /locus_tag="RJ285_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDV7383344.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEK
                     YEQTPKQYQKTKNLYFLSKN"
     gene            complement(13549..14154)
                     /locus_tag="RJ285_000541"
     CDS             complement(13549..14154)
                     /locus_tag="RJ285_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDV7383345.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGLDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(14144..15289)
                     /gene="thiH"
                     /locus_tag="RJ285_000542"
     CDS             complement(14144..15289)
                     /gene="thiH"
                     /locus_tag="RJ285_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HDV7383346.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLSEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNALKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFGALLGIDDFRKDALATALHAHFLQQAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(15292..16068)
                     /locus_tag="RJ285_000543"
     CDS             complement(15292..16068)
                     /locus_tag="RJ285_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HDV7383347.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKTQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDV
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(16071..16874)
                     /gene="thiF"
                     /locus_tag="RJ285_000544"
     CDS             complement(16071..16874)
                     /gene="thiF"
                     /locus_tag="RJ285_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HDV7383348.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(16871..17062)
                     /gene="thiS"
                     /locus_tag="RJ285_000545"
     CDS             complement(16871..17062)
                     /gene="thiS"
                     /locus_tag="RJ285_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HDV7383349.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(17059..18501)
                     /locus_tag="RJ285_000546"
     CDS             complement(17059..18501)
                     /locus_tag="RJ285_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDV7383350.1"
                     /translation="MNLNQTLQEKYPHLEVSVLKLSEVKKNIDFRIDDSFWTMKLIYN
                     NKLNYKKIGECLLKSQYGISINMNEEGDGIPIYRMNDIDNMLCNFEVKKYALIDKNEL
                     QTFRLNYGDVLFNRTNSYEFVGRTGIFYNNRENFVFASYLVRLVCNKEILLPEYLTVF
                     LNTHIGKKEIRRRARPSINQTNVNPEELKEIKIPIFPMEFQLEIQNLVKDSHKALEES
                     KELYKKAEETLYLELGLDPKNPLQSLLDSKTNNPTNSPNISIHTLKESFLKTGRLDSE
                     YYQSKYEDIEKMIRSYKDGFCNLKDLVNDISSGFAFSSDDYQDVGELVLIRINNIKNA
                     TLDLSNVIYLKNEAYNLSPKDKIKKGDILISMSGSIGLSCVVRDDISAMVNQRILKIS
                     IKNFNSDVLVLLLNSFICKMQFERIGTGGVQTNLSSIDMQNILIPKIDSTTQEKIAKY
                     IQESFNLRKKSKQLLDNAKIKVEEQIQGKI"
     gene            complement(18627..19130)
                     /locus_tag="RJ285_000547"
     CDS             complement(18627..19130)
                     /locus_tag="RJ285_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383351.1"
                     /translation="MYHLLDFSTCKCENEKFDLAYKIFKQDFIEAPLYLAGCIYIDPQ
                     SHKKHKGKEKIFWHITTRENKQNKTREFDSQRACRINWIKQIIINHTHSEIKAFYYKE
                     KRAIRFYLWLYNHNFIVILQKLGRSSSFLVTSFYIDKGYNKNIYEKRYRNYINGNDIE
                     LKNCEWF"
     gene            complement(19133..>19315)
                     /locus_tag="RJ285_000548"
     CDS             complement(19133..>19315)
                     /locus_tag="RJ285_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlfA"
                     /protein_id="HDV7383352.1"
                     /translation="VDLLIGAISYKARNDIEHVSEIKNYIINKIETLANIELDAGTPP
                     WENKCNIFRIQLGKGE"
BASE COUNT         6648 a         3277 c         2575 g         6815 t
ORIGIN      
        1 ttaaaaaata tttaaaatca gctatatttt tagctcttta tcccttagca atgttagctt
       61 ctaatttgca cgaatttata gcactaagtc aaaataatga atcctatctc attaagcaaa
      121 tgcaaagcga acaagcaaat ttagacaaag aacaagcttt tagaaattac ctaccctctc
      181 ttagtctaag ctcagcttat gtagccaaca ataaagatcg cttcattatc gatccacaag
      241 aaagtttatt tgctaaagtt tctcttaatt ttttgctttt tgatggaggt gctagagagg
      301 ctaatttaag agttttagaa agcagagaaa aattaagcct tttagacaaa gaacaaaata
      361 aaaattacct tgccctaaat gcaatcacac tttattttaa caccttaagt cttgaaaaaa
      421 ttttactagc caatcaacaa aaagtatctt ttttaaaatc aacttttgaa agattgcaaa
      481 aattttacga cgcaggactt agccctaaag atgaacttga aagcattaag gctaaatacc
      541 atttaagctt attagagctc agtcaaaatg aattaaaact tgccaatata caaaaagaga
      601 ttaaaatttt aagcgataca gattttaaag tgcaagggaa tgctttttta gaaaatccgc
      661 aacaagaaaa aagtcaaaac tatgaagtaa tgatagctaa agaacaaatc aatcttgcta
      721 aagaaagtgt aaatttggca aaagctgaat attttccaaa attttatatt caagataatt
      781 ttaactttta taaaaacaat tataatccaa aagttccagc tccttttgca aatttagcgg
      841 atcaattctt agaaaaatat tctcaaggta atcaatttat tttaggtatg gaatggaaaa
      901 tttttgattt caatgcaagg gctaaagaag ttgaaaaaga gcgtttaaat gttcaaatag
      961 ccaatgcaaa tgcaagattt agcgagagaa aaaataaaga agaattaaat tatttagaca
     1021 aaagtttaaa agttttacaa gaacaaattt tagctcttaa tcttagctta aatgctgcaa
     1081 atttagcttt tgaaagtgta gataaaaaat accaagcagg acttgtttct tatgtagaat
     1141 atcttcaagc tttagaggct aaatttaaag cacaaagcga tttagagctt gctaaaaatg
     1201 aatttgaaat tactaaagca aattattatt ttaatgcggg tatagatctt aattcaaagg
     1261 ttaaagaatg aaaaaaattc tatttttact tcttgttttt aattgcgcct ttggcgaaga
     1321 aatttacgca agtttcaatg tagaagcatc aaaacaaagc aaacttgccc ttgaaagcat
     1381 aggtttggtt caaaaaattc ctgtagaaat tggacaaaaa gtcagcaaag gagaactttt
     1441 acttgctctt gatcaagaaa gtgaaaaaat agctcttcaa aatgctcaaa attcttatca
     1501 acttgccctt gtagaatacg aaaataccaa aagtaggatg caaaaaatca aagctgtaga
     1561 aaatgttata gacaaacaaa gctatgaaga tatgaaagct aagtttgatg ctgctaattt
     1621 aaatttaaac agagcaaaaa tcaatatagc ttattataaa aatatcatgg caaaaaaaga
     1681 attacgcgca ccttatgatg ctattatcgc aaacaaattt atacaagtgg gcgaaggagt
     1741 aggaggagta gctcaacctt taatagaaat tttttcctat ccacaaagca aactgatttt
     1801 aagttttgat gaaaaatata aagataaagt tagattaggc gatgatttct tttataaaat
     1861 cgatcaaaat ggtacagaat tgaaaggaaa aatcagcctt atttatccaa gtatagaagt
     1921 aaaaacaaga aaaatttatg ctgaagtgca aactacaaat ctaacaccag ggctttttgg
     1981 tgaaggtaga atcatcacta aagattaaaa atgtttaaac tagctataaa ccgacctatt
     2041 accgtgctaa tgtttttctt agctcttatg atttttgggc taatctctgc ttttagcatg
     2101 agtgtaaatt tatttcctaa tgtttccata cctcttataa aaatcacaag caagataaat
     2161 ggggatttaa atttcgtaga atcaaaagtc actaaagaaa tagaaaatgc tttaagtgaa
     2221 atcgatggag taaagaccat aacctcagct gcatatgata attttagtgt aagtgtagtc
     2281 gagtttaaac tgggtaaaaa tcttgaagta gctgccaatg atgtgcgtga taaaatagga
     2341 actttaagcc taccttctaa gcctgaaatt gaaaaaatca gttcagattc tggttctgct
     2401 atttcacttt ttctatattc taaagataaa ttacaactca tgcgtgaaat caatgacaaa
     2461 ataaaacctt ttttgcaaag agttgaagga gtaggtaaaa tcgaagctaa ggggttttta
     2521 gaaccccaaa ttcgcataga attaaaacca aacgaactta gaaaatacaa tcttaacgcc
     2581 cttgatatag caaatatcat caaaagtcaa aattttaaac aagccctagg cgaacttaac
     2641 aacaatcaag ataactatat catcaaaggc tattttgaag ccacaaattt agaagaactt
     2701 agcaatcttc gcataaaaac aggagtattt ttaagtgata ttgctaatat ttcaagcctt
     2761 tatgaagatg aaaaacaaag tgctttatac gaaggtaaag aaggggtgct tttagaactt
     2821 ggaaaaatca caaattataa cacccttgaa atgattaaaa atgtcaaaaa tgccttgcct
     2881 attttagaaa aacaaattcc aaaagatata agcattaata tgctttatga taaaagctta
     2941 aatatccaca agcacctttc tcaagtgatt tttgatatgg ttttggggat ttttctaacc
     3001 cttgttatcg tgtttttatt tttaagaaat ttaagtgcaa ctctcattgc ttgcatagct
     3061 atacctactt ctatcatttc aacttttttt attatcgatc ttttaggcta tgatttaaac
     3121 cgcttaactt ttatagcttt aaccttaagc ataggaattt ttatcgatga tgctatagta
     3181 gtgattgaaa atattgctaa aaaactaaaa acttatccgc ctttacaagc tgcttttttg
     3241 ggtatcaatg aaataggttt tagcgtttta agcataagta tagttttact ttgtgttttt
     3301 atccctattt cttatatgaa ctctatatca gggctttttt tcaatgcctt aggcataagc
     3361 gttgcaagtg ggatagttat aagctttttg gtttctgtat ttttaatacc tagtattggg
     3421 gcaagatttt taaatccaaa agaaaacaag ttttatgaaa aaacagaagc tttttttgaa
     3481 aaaatagagc aaaagtatga aaatttactc tataaaattt tacaaaataa agtaaaattt
     3541 atcctagcca ctcttgtttt tatagggctt tcttttgctt tagccactcg catagggctt
     3601 gattttttac ctatggaaga tgatagtgaa attcaagttt tgcttgaaag caaaaaggat
     3661 ttaagtttag aagccatgaa agaaaaaagt ttaaatttgc ttggaaaaat caaaaatgat
     3721 agcaatgtca aatacgcttt tttacttgta ggctatgatg atgccaaaga tgctacaaag
     3781 gctaaaattt atgttaaact taaaaattta gacgaaagaa atttaagaca aagtgccata
     3841 gtaagtttat atcgtcaaaa atttcaagat gaaagtttaa aaatcaaaat tttagaactt
     3901 ccaaagatag agggtgcagg cattgatgat cccgtgcaat ttttaatctt aggagatgat
     3961 ttaaacactc taaaagaagc tgcttctcag gcaaaagaaa ttttaggcac taatgcgcgc
     4021 attgtagata taagcgataa tgctaatgct acaaaagatg aagtagcctt acacatcaac
     4081 aaagaaaaag ccaaactttt agatgtcaat cctcaatata tcgctggggt tttagggtat
     4141 tctttctcgc aacttagcgt aggaagcatg gatagaggca attcaaaaga tgatattatc
     4201 ctaagttttg ctccagaatt taaaaaaaac atagaagctt taaagcgcat tagcattaaa
     4261 aacaaccaag gtataaattt agaactttca agcgtggtgg attttatata cagtaaagat
     4321 ttaaaaacta tcaatcgtta caataaaaac cgctctgtga aaatcacagc tggagtgaat
     4381 gatctttcct taggagcggt gcaaaaactt ttactagata atatggataa aattttaaat
     4441 aacaatccaa gtcttagcta tgctttttca ggctttatca atcttttagg tgaaaccgtg
     4501 caaggttttg ctatggcagt agcacttgct tttgttttaa tttatcttgt tttagccgca
     4561 ctttatgaaa gttttattct gcctttaatc atcatgataa ccatgccttt agcctttggc
     4621 ggagcttcta tagggctttt tatcacaggg cataattttt cactttttgt acttattgcc
     4681 atcatcttac tttttggtat ggtggggaaa aatgctattt tactcgtaga tgtagctaat
     4741 aaaaaatgcc atgaaggttt agatcccgat aaagctcttt taatcgctgg aaaatcacgc
     4801 ttaagggcta tattgatgac aacttttgct atgatttttg ctatgctccc acttgctctt
     4861 tcaaggggtg cgggctatga agctaattct cctatggcaa tagccattat ctttggactt
     4921 ataagttcga ctttgcttac cttactcgta gtacctgcac tttttaaatt ttgttttaaa
     4981 ctagatagca aattaagaaa aatttatgag agagaaaaat taaattaacc aaaatgatta
     5041 atttaatttt tttaagtatt attcttataa agtgctttta agttatcata ggcgatttgt
     5101 attttttcaa actgttctct tgcgtaagct ttttctattg cactttttcc ttgatgaaaa
     5161 tcaggatgat aaagttttac caaaatcaaa tatttttgtc tgatttcact aagatcattt
     5221 tgcggagtgc attctaaagt attaaaataa ttactaaaaa gcttagctaa agcattaaat
     5281 ttccatttca tattttcttt attgtgaata ttttggcgaa attttttata ctcttcgcgg
     5341 tcaacttcaa aattcacgca atattttaaa tgctcgctct catctgcaaa agcttcaaaa
     5401 agttcaaggg tattctcgtt tttatattct aaaattagaa tatttgtcat ttcattatat
     5461 tctatattat gatcttgaaa ataatttctt atataagtaa taaataattt ttcattagag
     5521 cttaacttca tcaaaattct acccgcaaca aaatcaatct tgataaacaa cataggctta
     5581 agcatattat tttgctcaaa aattaatcta aaagttttaa aatgagcatc ttgtaaattc
     5641 tctatacctt catttgtgct tttacgatat ttttgatcta aaacttttaa gaaataacgg
     5701 cgctgtggaa tttcattttc ttcaaaaaaa gaaaaaattt tattttttcg tcctataacc
     5761 tttgtgaaat ttttggtaat caagtcttta aaatactgaa atacgctaat atcatctgta
     5821 ttaacattga tagtttctaa agtttgcacg atttgcatct atttctccca taaaacctca
     5881 ttttcaaaaa gctctttagt gccttttaaa atttcattgg gtgtataatc ggctttataa
     5941 gataaagatt gacacttttt tacaaaatac ccaagataaa tataatctaa gttcattttt
     6001 ttagctattt gtatttcatt gagcaaagaa aatttaccca aagaaaaata cgaaaaatca
     6061 ggatcataaa aacaataaat gcttgaaatt ccatcctcta aaatatcaat caaatcaaca
     6121 caaacgagct tatcttctat ataaaatgca agctcatatc caaaattcat aaaaccatcg
     6181 acataaagat tataatactg tttaaagctt aaatcataac gcttccagtt ctttttttct
     6241 tccataaaac gatggtattt atcatataaa aacaaatgtt cattgcttaa attgggcgtt
     6301 ctaagtataa ctttggtgtt aatattttta tttacaaccc ttctttcact tcttgaaaaa
     6361 ttatattcat taactaaaat tctaagactt aaacattcat cacaatcttt acaaataggg
     6421 cgtgaaaaat acctaccaaa acgacgccaa cctcgtttta ttagctcatt attgatttct
     6481 ttagggcaat tttcaatgta tttatactct attcttgaac gtttatcctt taagtaagga
     6541 cactgatctt caagagtaca aaaaccaatc tcaagcatta aattttctta atatctgtat
     6601 ttttgataaa ttcggaaaat tcatcctgta gtttttcttg ctttaagaaa atttcttgca
     6661 tttccttatc tatgtttgtt tcttgatttt tttcgcgaat atctttagct agtttttcta
     6721 aattttttac acttgcacca ctcttgcttg atttcttcgc taattttgaa gtattggtgt
     6781 tagcttgcat ttctttttta atacttttaa gactgtctaa aaaatccatc tattattccc
     6841 tactttctcg tattttttta agcgtagcag ctattgcagc tataacttct tctttatttt
     6901 cttgatgacg atcttctgtt ttttctaata attcttgcat atgtgtttct atgaaagagg
     6961 tgtctaaata cccccttcta aattctcttg tttttgtaat ggcaattaaa aatggtattg
     7021 ttgttctaat atcatcaatc acaaattcct tcaaagcacg ctcaagttta ttaaccgcta
     7081 aatcataact tgttgcttta ataataagct ttgcaagcat ggaatcataa taaggcggca
     7141 cagtatagtc tttataaata tgactatcaa ccctaacaga tggtccaaga gctgggtagt
     7201 attctcctat ttttccagga cttggaataa aatttttcca tacattttca gcagtaattc
     7261 tagcttcaat agcaaaaccc ctaggtttaa tatcgctttg ttctaagtcc aaaatttctc
     7321 ctgctgcaat acgaatttgt cttacaataa gatcaatacc tgtaatttct tcagtaattg
     7381 gatgctcaac ttgaattctt gtattcattt ccataaaata aaagcgatta taatcatcaa
     7441 gcaaaaactc tatagttcca gcatttgtat aacctacagc cttagcagct gccacagctg
     7501 taacacccat ggtttttcta agattatctg aaattccagg gcaaggtgct atctcaatta
     7561 ccttttgatg tcttctttga atagaacaat ccctttcaca aagatggata atatttccgt
     7621 agttatctcc taaaatttga aattctatat gtctgggatt aactacatat ttttccataa
     7681 atacttcatc attattaaag tatgttaaag cttctctttt gcaagattca aaggcatttt
     7741 caagatcttg ttctttatga acaacgcgaa ttccgcgtcc acctccacca cctgaagctt
     7801 ttaaaataac aggataacca atcttctcag caaaaatttt aatttcttcc atgctatagg
     7861 aatttaattt ttcagtccct ggaacaatag gtatgccatt tttagccatt aacttacgag
     7921 cgatattttt atttcccatc ttatggatta cttcagattt tggacctata aaaataattc
     7981 cagcatcttc acaagcctta gcaaattcgt aattctcact taaaaatcca taaccaggat
     8041 ggatcgcatc agcaccacaa gccttagcaa tctcgacaat acgagcaaca tctaaatatc
     8101 ctcttatagc atccgttcct atgcgataag cctcatctgc gatttttaca tgcaaacatt
     8161 cacgatcagg ctctgtaaaa actgcaacac ttttaatatg taaatctcta caagcacgga
     8221 ttactctaac agctatttca gctctatttg ctatgagaat tttatggatt tgattcataa
     8281 tttgcctttt ttgttatatt tttattgtta attttagcaa attttcctta caaaaactta
     8341 gcaaaaaatt taatttattt tagttataat aaaacttttt aaaattttaa ttccaataaa
     8401 gaaaagttat aattataatg gttgctgata aaagattatt ttatttaagt tgtattttaa
     8461 tcaccatagg aatagtattt tcatactctc ttacagcttt tactgttctt tttcttgact
     8521 atagtgagtt tcattttttt attcgtcagc ttttttttgg aattagtggc atacttataa
     8581 tgttttttat ttctcgattg gaccctgata aagcactttc taaaaaaatt attttagcta
     8641 ttttgattat ttcttttatc tttatcatca ttttgccatt tttaccttct gcattagcaa
     8701 cagctagcgg aggagctaaa cgctggatac gcttaggccc actctctatc tctcctgtgg
     8761 aattttttaa aataggattg atttattttt tagcatggag ctatacaagg cgtattgatg
     8821 atagcaaaaa agctatcaga cacgaggctt taattcttct gccttattgc atcttagctt
     8881 ctatagttat aggatatatt tatatcactc aaaacgattt aggacaaagc gtaatttctt
     8941 tctttttgat tctggcttta gctttttttg caggagctag taaaaggctt tttgcttttg
     9001 gaactttaat tattatgatg ataggtataa tggtaatttt tagcaaccaa agaagaattc
     9061 aaagaatcgc ttcttggtgg ggaaatatac aagatgcttt tttacctatg cttcctgatt
     9121 ggctggcaaa tgctttaaga gtaagtagca acagcgagcc ttatcaaatt tcacactctt
     9181 taaatgctat agcccatgga ggaatgtttg gcgaaggctt aggacttgga acttttaaat
     9241 taggcttttt gagtgaagtg catactgact ttgttctttc aggaattact gaagaaatag
     9301 gactcttagg tcttggggtt atttgctata tttatctttg gatgatttta agaattttta
     9361 gaattgcagg aagatgtgaa gctaaacaag attttatttt ttgttcaggc atagccttac
     9421 ttttactttt ttctttcttt atgaatgctt ttggtattat ttctcttact ccactaaaag
     9481 gcgtagcggt tccactttta agctatggag gaagttcaat gtgggcaatt tgtataggca
     9541 taggatatgt attaatgatt tcaaaaaagg ttaaattatg acaatagctt taacaggtgg
     9601 tggaactgga ggacatttgg ccatagtgcg ttgcttatta gaaagtgcga ttaaaaaaaa
     9661 tatagaatgt gtatacatag gcagtcaaaa tggtcaagat aaagcttggt ttgaaaatga
     9721 agtacgcttt aaggaaaaat tttttttaag ctctaaagga gtggttaatc aaagcaaatt
     9781 tgacaaaatc agttctttgc tccacacctt aaaactctcc aaagattgta gagaaatttt
     9841 taaaaaatac cacatccaag ccgtttttag tgtaggtgga tacagtgcag ctcctgcatc
     9901 ttttgcggct ttattctcac atttgcctct ttttatacat gaacaaaatt caaaaagcgg
     9961 ctctttaaat atgcttttaa aacctttcgc tacaaaattt tttagcgcct ttgaaaaaga
    10021 aattagccct tatcctgtag cagataaatt ttttgataat gctaggattc gcaaagaatt
    10081 aaaaaatatt attttcttag gaggatcaca aggagctcaa tttatcaacg aactagcttt
    10141 aaatttagca ccaaaacttc aagaacaaaa tatcaaaatc atccatcaat gtggaaaaaa
    10201 tgattttgaa aagtgcaaaa aacattatca aagcttaaat atccaagctg atatttttga
    10261 ttttagttta aatttggaag aaaaaatgaa aaatgcagat ctagctatat caagagcagg
    10321 tgcaagtact ctttttgaac tttgtgctaa tactttgccc actattttta taccttatcc
    10381 ttatgcagct aaaaatcatc aatactttaa tgctaaattt ttacaagatc aagctttatg
    10441 tcaaattttt atgcaaaact ctattaatct tgatgaattt tttaagtcaa tattaaaact
    10501 aaatctagaa aatatttcta caagattgca aaatataacc caaaaaaatg gcgcagatat
    10561 gctaatccaa aaagctttat ttgataattt gacttttata agataaatat ccaaagatat
    10621 ttactaaaat tccaacaaaa actaacatca aaatagcaaa tgaaaaattt tcaaatttgt
    10681 catgcaaaaa acctataatc cattgtcctt gtgctgcaat taaatatcca aaaccctgag
    10741 ataaagcaga aagtctcgct gctatttgag cattagagct tttttgtgca ataaaaagca
    10801 acgcaatgcc aaaaactcca ccccatggaa aacccatgat aaaagcactg ataataatag
    10861 aaattttact atcaaaaata aagagcatac caaaagcgat cacatacata ctgcacaaac
    10921 ctgctatgta aaaagtatgt aaattttgtc ttaattttcc taaaagtaaa gggccaaaaa
    10981 gagacactgg agctgcaaca agttgagcaa ataaaaccat acttgtagaa aattctttat
    11041 caaatccttt ttctacaaca atttgaacat accaaaaaaa caaagaataa gctaaaaaac
    11101 tttgaaatcc cataaaaaga gtaattttcc aagttgtgaa atttataaaa agattgattt
    11161 ttttatgagc ttttttctta atacgaaaaa atctaccatt tttagcttga ggatagtaaa
    11221 ctactaaagc tacaaaagaa aaaatagccc agaaaaacat agctccagct aaatcaaata
    11281 cactaagcaa aggtatagct aaagcaatac ccataatcga agaaatactc aaaacaagac
    11341 tataaattcc cattatactt gccatttttt ttggaaattt ttctttaata aaactaggaa
    11401 gtaaaacatt tgcaattgct ataccacagc ccattgctaa cattcctaaa aataagccat
    11461 atacaccaaa ataagaacga ataatttcgc ctaaaaaaat taaaaaaatt ccaaaaacaa
    11521 tagcacgaat aggagaaaaa taccccacaa taaaagaaat acttccaaaa gctatcaaag
    11581 gaagacttgt aagtatacct gctacggttg agtttaaata atacttatct ttaataatat
    11641 caataatagg ccccactgca gtaattgggg ctctaagatt aaaagctaca ataataacaa
    11701 taataacatt aatccaaaat atctttttaa aagaagccat aaaagcctta tttgttaagt
    11761 tctactttga atattttacc ttctgccatc ttaggaatcc ataaaatatt accttcaata
    11821 aatatatctg caggaccttt catcaaagga agttcaagtt ttacagattt aacattatct
    11881 aaattataaa tatatccatt tagattattt ccccaagaac ttaccaataa accatcttta
    11941 taaggaacta ttccatcata agattctttt tcatttttaa ttatactgag ttcttttgta
    12001 tttaaatcat aagccattac aacaccgcca cttacaccat caggatgata accagttata
    12061 aaaagcttat gtttttttct atctagatat aacccatttg gaccgccaaa ttttgctaaa
    12121 tcaagtttta ataattcatc atattgctta gtttttaaat caacctttaa aataagccct
    12181 gtgccagtat cgctaaccaa aagcgtattg tcgtctaatt tttctatgtc atttaaaaag
    12241 attgcacctt taataggtaa attaaaaatt tcttttttag ttttaagatc aaaaccgcgt
    12301 aaaacatcga tatctaccac ataaagagtt tttccaatct ccatcatgcc ttttggtgca
    12361 ttaagatggg ttaaaaattt atattctagc actttgccat ttttatcaag cttagaaata
    12421 aatccatcat tatctttcgc caaaggttca agtttttctc ctacattaga tacataaaca
    12481 tagtttttat ctacaaaaat actttcaggg cttttaaaac catcaaattc ttgatatttt
    12541 aattcacttg caccaagcaa acttccaaga agcgctaaac ttaaaacata ttttttcata
    12601 ttttctcctt tatttaaaaa tattttcatt gaattatatt tatttagata aaaaaaatgt
    12661 gctagttttt tgataaaaaa tacaagtttt ttgttttttg atattgctta ggagtttgct
    12721 catatttctc tttaaatctt tcaataaacc aagctaccga agaaaaagcg cactcattag
    12781 ctatttcatt gatatttttt ttagaaaatt taagtaaaat ctttgctttt tgcaaccttt
    12841 tttcatctaa ccatttttta ggactttgtc caaaacattt cttaaattct ttagaaaaag
    12901 ttgctaaatc taatttcgca aaattagaca tttcatttac gcttaaaaat tctctaccac
    12961 aatactcaaa aagttgggaa agatcaaggc gaaattcttt taaaattcct gataaaaaac
    13021 taataaaata aatattctta tttaaaagca aatgtaaaaa aatctcttca aatttcaaac
    13081 tcactatagg atctaaaatt tgcgtatttt cttcaaaatg cggtgaaaaa ctttccaaaa
    13141 ttccttgcaa aatcttatca ttttttaccc aaaaaatttc atagttttga aacttttgat
    13201 ctagtttaaa aaaatcttta tacttataaa taagctcaat taaaaatgca ttgtcaaaaa
    13261 aaaataaata agcttcataa actcctttac taagtcctac attgcttaaa gtatagctcc
    13321 cagcttttaa aaacaaagtt tcataagagt taatcttata atcttttgat gcagtgtgta
    13381 aaattttata tcctttgcga acaaaagtta aaagatgact tcctacatta acaaaagtag
    13441 aatgcgaagt atccgtttgt gtatatttag caaaagtgca agatttaatt tttttataat
    13501 tgacaccttt taattgcttt aaatcttctg gtaaagaaag aattttattc atcgtaaatt
    13561 ttgcctacat tctaaaagat actttttaag atctttttct ttcattaaaa tttcacgcat
    13621 gcaaacacct actacattta tatctttaaa attttctata ttttgagcat tgataccgcc
    13681 tatagcataa agtggaattt gactaaattc aagcaaggat tttaaaaaat caagcccttt
    13741 aggttctaaa cccatcttgc aagaactttc aaaaatatgc cctacaaaag cataatttac
    13801 cttatagctc atcgcctcta aaagctcttc tttgctatgg actgaagtac caagtatatg
    13861 aaaatatttt gttaatttag gttcttttct tagcaaagaa agcggtgcgt gaaaataacg
    13921 atgtcccaat tttaaacact ccctatcaaa aaaatgcaaa aaacaagtca ctttttgctt
    13981 tgcgcaaatg cttaaaactt cttttgctaa gtcataatac tcaaattcgc ttaaatcttt
    14041 ttctcttaaa actatagcat ctaccttagc cttagcaagt ttttcaatct gctttaaaaa
    14101 gtctatttct acacattttc tatcgcttat ggcgatgatt tttttatccc acatagatac
    14161 tatcgctcat cacagcttgt aaattggatc ttttaagcat agctaaaatt tcatccacgc
    14221 tcctatcatc tgaaatttca aactgctcat cacccttttt ctcaccctta tgctcaccta
    14281 tacccacact cactcctgca ctcattttag tagcaccaag cttgataacc tcatctctaa
    14341 agcctattct ttcacgactt gaaatggtaa tgcctgcaaa aggtaaaaaa agtctataag
    14401 cacaaagtac ttgcaaaagg cgtttttcac tcacatcttt aggatgaatt ttagcattat
    14461 tgataatagg tcttaaacga ggcaccgaaa tagaaatttc agcatgagga taagcttgtt
    14521 gtaaaaaatg cgcatgaagt gccgtagcaa gggcgtcttt tctaaaatca tctataccca
    14581 aaagtgcgcc aaaagccact ccacgcatac ccgcttttaa agctctttct tgagcattaa
    14641 agcgataagg gaaaatgcgt ttttcaccag ctaaatgaat tttagaatat tttaaagcat
    14701 tgtaagtttc ttgaaaaaca gtcacataat cacaaccctt ttcatgcaaa attttatatt
    14761 catcttcatt cataggataa atttcaacgc ctacaacctt aaaatactct ctagctattt
    14821 tacaagcatt tgctatatat tctacacttg caaactccct accctcgcct gttagcatta
    14881 aaatttcttc taaaccactt ttagcaatgg cttgcatttc ttcgtgaatt tcagcttcac
    14941 ttagcttggc tcttgcgatt ttattacctt tttgaaaacc acaataaaca catttagaat
    15001 tacaataatt tgacaaataa agtggggtaa aaagagagat agaatttcca aaatattttt
    15061 gcttgacttt agcggattta aaggctaatt cttctatgaa atcttctgct gcacttgaaa
    15121 gcaaagcttt taaatgctct atgcttaaat gtgtttgatt taaagcattt ttaacatctt
    15181 tagcgctaaa ttgactctca tcataacttt gaacttgagt taaaaccttg tttaaaattt
    15241 cgctttttat ttcctgcata tgaggtaaat actgcatata atcttgcata atcaatccct
    15301 taaaaagcct gttaatggag aacttgcttt agctttactc acacttgcca aacctgctaa
    15361 aaaagccgct cttcccgcat ttactgccaa agaaaacgct ttggccatta aagcaacatc
    15421 ttttgcttca gctatggctg tatttaccat caccgcactt actcccattt gcatagcttc
    15481 acaagcttgt gaaggacttc caatacccgc atctacaatg ataggcaaat caatttcatt
    15541 aagcaaaatt tgtataaatt ccttagcaca taagccttta ttactcccaa taggcgctgc
    15601 taaaggcatg atagccgcag ctccagcatc acgcatagct ctagctgcgt aaagatcagc
    15661 atgcatgtaa ggtaagggtg taaaaccctc tttagctaaa agctcgcaag ctttaatcgt
    15721 ttcataatta tcaggcaaca aatacctact atcgcttatc acttctatct tgataagttc
    15781 tccacaacca agctctcttg aaagccttgc aatgcgtaaa gcttcatcgg cgtttcttgc
    15841 gcctgaagtg ttgggtaaaa gtgtgatatt tttagggata taatcaagta tattagcaat
    15901 ttcccctgta tttgcacggc gtaaggctag agtgataatc tgtgttttag cttcttctat
    15961 agctgatttt ataagctcta gcgaatattt tccagaacct aaaataaatc ttgaatcaaa
    16021 ctcgtatttg cctattttta atttatcgtt ttttaaattt tcttgcattt ttactcctta
    16081 tttgctaaaa gctctaaaac aaggttactt tgatgtcctg cgcaaatatt tacccttggc
    16141 gccataagtc catttcctag cttagcacca tttaccaaat ccccacacac atagaaattt
    16201 ttagcaattt ttcttgtttg tatgctgttg ctatcaccat agcccgcaag ccctgaagca
    16261 cagattaaaa cactatcttt gtaaaatcta tgaaaatttt gcgctatcat cgcttttgcg
    16321 atagcactat caaaggcttc acaaactata tctatatctt taaacaaaga ttttaaatta
    16381 tcctcatcga tttttaaggt acaaatttca acgctgatat aaggattaat ttcgctaatt
    16441 tgctctttta aagcttcggt tttaaacttg cccaaatcac ttacacgata agcctgacga
    16501 tttaaattac taggctcaat cacatcaaaa tcaatcaact ttaaataccc cactccactt
    16561 cttgccaaat ttatcgctat atgtgatcca agtccgccta aaccacacac cgccacgcgc
    16621 ccatttttaa gtttatcgtg aagctttggt gtatgtcttg ctctcatcat agcatctagt
    16681 gcgtcttttg gaggtaaagt atttttttct atacaaaaaa gctcatcatt ttcatttaaa
    16741 gcgatattct cttttgttgc aaaaccattg ataatccata catcattttc atttttgctg
    16801 atattttcaa aaaattccaa acttgtttta aagtctgtat caagttcttt gccattaaat
    16861 tttactctca tcatccacct cctacaaaac ttacgatttc agctttatcg ttttctttta
    16921 aaatcaaatt ttcaaattca ctcttaggta taatctctcc atttaattcc aaggcgataa
    16981 gttctatttt caagcctttt tctttgataa aatccataaa tttaagctct tttaactcaa
    17041 gcttttgtcc attgataatc atatttttcc ttgtatttgc tcttctactt taatttttgc
    17101 attatctaat aattgtttag attttttcct taaattaaag ctttcttgta tatattttgc
    17161 aattttttct tgagttgtag aatctatttt agggataagg atattttgca tatctattga
    17221 agaaagattt gtttgaaccc cacctgtacc aattctctca aattgcattt tacaaataaa
    17281 agaatttaaa agcaatacca aaacatcact attaaaattt ttaatcgaaa tttttaaaat
    17341 cctttgatta accatagctg atatatcatc tctaaccaca caagacaaac caatgctacc
    17401 agacatagaa attaaaatat cacctttttt tattttatct ttagggctta aattataagc
    17461 ttcattttta agatagataa cattgcttaa atctagcgta gcatttttta tattattaat
    17521 cctaattaat acaagctctc caacatcttg gtagtcatca cttgaaaatg caaaaccact
    17581 tgaaatatca ttaactaaat cttttaaatt acaaaagcca tctttataac ttctaatcat
    17641 cttttctatg tcttcatatt tactttgata atattcagaa tccaatcttc ctgtttttag
    17701 aaaagattct tttaatgtgt gtatagagat atttggtgag tttgtaggat tatttgtttt
    17761 agaatctagc aaactttgca atggattctt tggatcaagt cctaactcaa ggtataaagt
    17821 ttcctctgct tttttataca actccttact ttcttctaat gccttatgag aatcttttac
    17881 caaattttga atttctaact gaaattccat agggaaaatg ggaattttaa tttcttttaa
    17941 ttcttcagga tttacatttg tttgattaat tgatggtcta gcccttcttc ttatctcttt
    18001 tttaccaata tgcgtattta aaaaaactgt aagatactct ggcaacagaa tttccttatt
    18061 gcaaacaagc cttactaaat atgaagcaaa aacaaagttt tctctattgt tataaaaaat
    18121 tcctgttcta cccacaaact cataggaatt tgttctatta aacaaaacat ctccataatt
    18181 taacctaaaa gtttgcaatt catttttatc aattaaagca tattttttga cttcaaaatt
    18241 acaaagcata ttatcaatgt cattcattct ataaataggg ataccatcgc cctcttcatt
    18301 catatttatt gaaataccat attgagattt taataaacat tctcctattt ttttatagtt
    18361 caacttattg ttataaataa gcttcattgt ccaaaaacta tcatctatgc gaaaatctat
    18421 attttttttc acttcactaa gttttaatac acttacttct aaatgcgggt atttttcctg
    18481 caaagtttgg tttaaattca ttttattcct ttttttattt caatctaagt aaaaaatatt
    18541 tataattata aagctcaact accggtggta gaaagagatg gctagctttt atgcttcttg
    18601 cagatgccta aatctgcacc aaacccctaa aaccattcgc aattctttag ctctatatca
    18661 tttccgttta tataatttct atatcttttt tcataaatat ttttattata tcctttatct
    18721 atgtagaaac ttgtcactaa aaatgaacta cttctgccta gcttttgtaa aataactata
    18781 aaattatggt tatataacca caaataaaaa cggattgccc gtttctcttt ataataaaaa
    18841 gctttaattt cggaatgagt atgattgata ataatttgtt taatccaatt tattctgcaa
    18901 gctctttggc tatcaaactc ccttgtttta ttttgtttgt tttctcgtgt tgtgatatgc
    18961 caaaatatct tttctttccc cttatgcttc ttatgtgatt gcggatctat ataaatacaa
    19021 cctgctaaat acaatggagc ctcaataaag tcttgtttga aaattttata agctaagtca
    19081 aatttttcat tttcacattt acaagtgcta aaatccaaga gatgatacat tattattcac
    19141 ctttacccaa ttgaatccta aaaatattac atttattttc ccaaggtggc gttcctgcat
    19201 ccaattcaat atttgccaat gtttcaattt tatttataat ataatttttt atttcactta
    19261 catgctctat atcatttctt gctttgtatg aaatagcacc tattaacaaa tccac
//
LOCUS       DAPIWU010000019        19295 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.019, whole genome shotgun sequence.
ACCESSION   DAPIWU010000019 DAPIWU010000000
VERSION     DAPIWU010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19295
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.019"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            1..756
                     /locus_tag="RJ285_000549"
     CDS             1..756
                     /locus_tag="RJ285_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7383353.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(780..1419)
                     /locus_tag="RJ285_000550"
                     /pseudo
     CDS             complement(780..1419)
                     /locus_tag="RJ285_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
     gene            complement(1416..2405)
                     /locus_tag="RJ285_000551"
     CDS             complement(1416..2405)
                     /locus_tag="RJ285_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7383354.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2409..3188)
                     /locus_tag="RJ285_000552"
     CDS             complement(2409..3188)
                     /locus_tag="RJ285_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7383355.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVSPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNMGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILIGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3189..4028)
                     /locus_tag="RJ285_000553"
     CDS             complement(3189..4028)
                     /locus_tag="RJ285_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7383356.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFVLAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLAITFIANFLSKKYNF
                     KVL"
     gene            complement(4025..4835)
                     /locus_tag="RJ285_000554"
                     /pseudo
     CDS             complement(4025..4835)
                     /locus_tag="RJ285_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
     gene            complement(4832..6157)
                     /locus_tag="RJ285_000555"
     CDS             complement(4832..6157)
                     /locus_tag="RJ285_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HDV7383357.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDSMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6168..7214)
                     /locus_tag="RJ285_000556"
     CDS             complement(6168..7214)
                     /locus_tag="RJ285_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDV7383358.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDIGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7331..8314
                     /gene="corA"
                     /locus_tag="RJ285_000557"
     CDS             7331..8314
                     /gene="corA"
                     /locus_tag="RJ285_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDV7383359.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8335..8877
                     /gene="mog"
                     /locus_tag="RJ285_000558"
     CDS             8335..8877
                     /gene="mog"
                     /locus_tag="RJ285_000558"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDV7383360.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAMCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8874..9059)
                     /locus_tag="RJ285_000559"
     CDS             complement(8874..9059)
                     /locus_tag="RJ285_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HDV7383361.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            9187..10374
                     /locus_tag="RJ285_000560"
     CDS             9187..10374
                     /locus_tag="RJ285_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDV7383362.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLILNNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGVIIMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPILNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYAFFYLSHPSISDRIK
                     ALS"
     gene            10371..11186
                     /locus_tag="RJ285_000561"
     CDS             10371..11186
                     /locus_tag="RJ285_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDV7383363.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIKI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFNIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELELKITACDINPKALELALENAKLHKVDHLIDFKL
                     CHFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFIAKFTNMRYDKK"
     gene            11199..11669
                     /locus_tag="RJ285_000562"
     CDS             11199..11669
                     /locus_tag="RJ285_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HDV7383364.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFKIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENTTKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            11708..12457
                     /gene="flaC"
                     /locus_tag="RJ285_000563"
     CDS             11708..12457
                     /gene="flaC"
                     /locus_tag="RJ285_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HDV7383365.1"
                     /translation="MMISDATIMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            12492..13124
                     /locus_tag="RJ285_000564"
     CDS             12492..13124
                     /locus_tag="RJ285_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDV7383366.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(13136..16738)
                     /gene="dnaE"
                     /locus_tag="RJ285_000565"
     CDS             complement(13136..16738)
                     /gene="dnaE"
                     /locus_tag="RJ285_000565"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDV7383367.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGPEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGIIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGTKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            16988..17173
                     /locus_tag="RJ285_000566"
     CDS             16988..17173
                     /locus_tag="RJ285_000566"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383368.1"
                     /translation="MAEELQSDFKDVEVEFEIGGRGDFIVEVDGKVIFSKTQLINCES
                     ERFPYQNEINQLIKNRV"
     gene            complement(17186..17515)
                     /locus_tag="RJ285_000567"
     CDS             complement(17186..17515)
                     /locus_tag="RJ285_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HDV7383369.1"
                     /translation="MKFYGIKNCNSVKKAIDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(17512..18852)
                     /locus_tag="RJ285_000568"
     CDS             complement(17512..18852)
                     /locus_tag="RJ285_000568"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HDV7383370.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAT
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(18876..19289)
                     /gene="uraH"
                     /locus_tag="RJ285_000569"
     CDS             complement(18876..19289)
                     /gene="uraH"
                     /locus_tag="RJ285_000569"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HDV7383371.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         6800 a         3256 c         2593 g         6646 t
ORIGIN      
        1 atgaaaaaaa tattaagcat tgctctagtt gctttagttg gtttattttt aggtgcttgt
       61 agtgattcta aaaataaaga atcaaatgca agtgtagaat taaaggttgg aactgctcca
      121 aattataaac cttttaatta taaagaaaac tcaaaactta caggttttga tactgatttg
      181 gttgaagaga ttgccaaaaa aaatggtatt aaaattgttt gggttgaaac caatttcgat
      241 ggattgattc ctgccttaaa agctggcaaa atcgatatga ttgcctcagc tatgagcgca
      301 actgatgaaa gaagacaaag tgttgatttt accaaacctt actatatgag taaaaatctt
      361 tatcttaagc taaaaaacaa cgactctctt caaacaaaaa atgatttaga aggtaaaaaa
      421 ataggagttc aattaggaac tttacaagaa aatactgcaa aagctatcaa aaatgcacaa
      481 gtacaaagca ataaagattt aaacatagct gttttagcac taaaaaacaa caaaattgat
      541 gctattgtag ctgatcaaga tactgctaaa ggttttttag ctgaaaatcc agaattggta
      601 agtttctacc aagaaacaga tggaggagaa ggctttagtt ttgcttttga taaaaataaa
      661 caaaaagata ttattgaaat atttaacaaa ggcatagatg aagcaaaaac tgatggattt
      721 tatgatactt taattaaaaa atatgaatta gaataagcgt gaattttcac gcttatagct
      781 taaaaagtta aaatttcata ttttctctct tttgcaattt ttaaaatttt ttcatcgcca
      841 ttacatacaa aggctttgct aacagactct agtaaaggta aatcattgat agaatcacta
      901 aaaaaataag aatctttcat ccatttttca taatctttac ccaaatattc cttaagtctt
      961 aaaaccttgc cttccttaaa gctataaatc ccataagctt ttccactaaa tttatcaccc
     1021 acacgctcgc attttatggc tatgctttct ctcactccca aaaaagaggc gatttttcta
     1081 actaaaaatt cagccgtagc tgaaattata atacaccttt gatcttgata tttgattata
     1141 agttctttag ctttttcata aggttttata taaattttta taaattcatc tactaaagat
     1201 gaaattctat cttcattttt acccttaaca ctttgaagaa aaaaaagtca taaattcatc
     1261 catatcaagc tttttttctt gatattgttt ttgataaaaa acgatttttt ctaaatattc
     1321 ttgaggtaaa aaaccttttt caacacaaaa tttaagccaa agtttagcac tatcgccttg
     1381 tattaaagta tcatctaaat caaataaaac aagcttcatt ttaactcttt tgctaaagaa
     1441 agattgaatt ttaaagcgat tttatcacct gcttcataag tactatgagt gctaaaattt
     1501 aaagtatcta ccttaaattc aatttcttgc actctaaccc tatagcgtat gatattacct
     1561 agcaatgatt tttctttgat cttagcctct aagccttcgt tagaaatttc tatggtttca
     1621 ggacgcaagg ctatatcttt tttaaaatcg tgttttaaac ccaagctatc aagctcttta
     1681 gggcttaaaa tattgtaatt tcctataaag ctagccacaa aatgagattc tggcaaaaga
     1741 taaagattgt ttgcgttgga attttgtatg attttaccct cattcattaa aataatccta
     1801 tcggataact ctaaagcttc ttcttgatcg tgcgttacaa aaatagtggt gagttcaagt
     1861 tctttttgaa tttctttaat ttgcaccctt aaatgcttac gaattttagc atcaagtgcc
     1921 gataaaggct catcaagtaa aagtaaatca ggtttagtca ccaaagatct tgctaaagcc
     1981 actctttgca tttgtccgcc tgaaagctta tgtggataag ttttagcgta ttcttcaagc
     2041 tcgacgagtt ttaacatttt tttcactctt ttttctatgt cctttttatc catttttttg
     2101 atctttaaac caaaagctac attttcaaaa acgttaagat ttggaaaaag agcgtaattt
     2161 tgaaaaacca tacctatatt tcttttttga ggacttaatt tggtaagatc tttatcattt
     2221 aaagaaattt ttcctccatt aatttggcta agccctgcta tacaccttaa aagagtggat
     2281 tttccacagc cacttgggcc caaaagggtt ataaactcac cctttttagc actaaaatta
     2341 atatcttcaa aaataatttt atccccataa gcttttttaa aatttttaat ctttaaataa
     2401 gccatttttt actccttaat caaactagct ataaaagttg ttataaaaat taacacaaaa
     2461 taaactatta ccaaagcact agaataatgc ccactttgat ttttgatatt ataaagataa
     2521 acttgcaaag tctcataagc acttcctata agaatatttg cgtataaaaa ttcgcctatt
     2581 aaaaaagaaa aacttaaaaa aactgccacc aaaattccat ttcttaaatt aggcaagaca
     2641 agcttaaaaa tcgctcccat taaagaacct ccaagcatag cattagatgc gatgagttca
     2701 tttaaattga cattagacat agcattatct aaagccctat atataaaagg caaagctata
     2761 gtaaaataag taaaaatgag tatccaagct gtgcctccca tattgtcagc ataaagttgc
     2821 aaaagcccta cacagctaac tataggaggt acagcaaaag gcatgataat aagtatattt
     2881 acaaaggctt ttaattttaa aaaataataa tttagcacaa aaaccaaagg ggaaacaaga
     2941 atcacagaaa gtaaaatact gcccacacaa acaagcaaag aatgccaaag agcaagtaaa
     3001 aatctttcat catgaaaaag ttcttgatac catttaagcg taagatcatc aggcaaaaca
     3061 cttacacccc aagaagtgga aatagaatat aaaaaagtag ccattaaagg caaagctaaa
     3121 aataaaaaaa ccaaaaacaa aactgcataa tgataaattt tagcttttaa actcaaattt
     3181 tcattcattt aaagcacctt aaaattatat tttttagaaa gaaaattggc tataaaggta
     3241 atagcaagca tgataatagt tataatgatg cttaaagcac tagccatata aggatcaaga
     3301 ttgatatcgc ctgcgattaa agcagcgatt cttacagggg cgacattaaa atttcccgaa
     3361 cttaaagcat aaatagtcgc ataagctcca aaagcattgg caaataaaat cacaaaaaca
     3421 ccaaacaaag caggagcgag caaaggcaaa gctattttta accaatataa aaaattgcct
     3481 ccacctaaca ttttacaagc atttaaatgt gaattttcaa gacttttaaa agctggaagc
     3541 aaaagcaaga ttgccaaagg aatttgaaaa tacacataaa caatatttac cccgaaatta
     3601 gcataaacac taacaaaagg ctctatgcct aaatttttca aaaacacatt aactacacca
     3661 ttgcttccaa gaactataat gaaagcaaaa gctaaaggaa ctcctgaaaa attacttatc
     3721 atagtattta aagaaaaaag aaatttacat atttttgatg gagctaaaac aaataaagaa
     3781 tagctcgcca aaagccctat taaaagtcca aaaatactag aaataaaact gatttgtaaa
     3841 gaatttataa tgctttgtag atagaatttg gactcaaaaa tatgtataaa attggctaaa
     3901 gaataaattt catcctcttc tacataaaaa gcattaaaaa caatccaaat caaaggtgct
     3961 atcataaaaa aagtaaaaac tataaaaaaa ggtaaaatac ttaaaaaggc tagaaatttt
     4021 tctttcattt tctggccttt aaaatttcat cattatatct cttatcgtgt ttaagtccta
     4081 aaatttcaca gacactgcca caaatttcat cctgttttat cttagcattt tcatacgaaa
     4141 aagcactacc aaaagtgaaa aaaggcacta aaatttcatc ttcgcttaag cctccatgac
     4201 ttttaccctc tgtcatacca tgatcgcttg tgatgattac attaatacct tgttctaacc
     4261 aagtaggcaa atactcagaa atcaaaacat caactttttt ggttttatta gcatactcga
     4321 tagagtgtga gccaaattta tgtcctgcat catctatatt catagagtgt ataagagtaa
     4381 aatctagatt atatttgttt cttaaatgct ccccatctgc aaataaatga gaatctaaat
     4441 aatcatcttc ataataaaaa tgtccataag gtaaagttaa attttcatct tctatatggc
     4501 gatgtaaaga aggaataaat tcttttttat tataaagctc aaaaacccaa tgataagctg
     4561 cgcctccagc ttttaagcct tgttctttgc aaaggtcaaa aatgcttgtt tgttttgaaa
     4621 aactcgattt attattaatt atcccactta aaacaggctt tacgcctgtt aataagcact
     4681 cgtataaagg gacgagacat actaggaagt tcgcattcta aagaataaaa tttgcctaaa
     4741 ttctctttgc aaagtgcatt caaatatccc atatttatac tagtgctttt acaatttaag
     4801 ccatcaagca caactaaaat aactttggac atcatttact ctttaaaaaa tcttttactt
     4861 caagcaaaat aaactcatta tcatcagtct tattaggttc tctacttgaa gaataaggaa
     4921 agttattgtc attttctaca actatatgag agtcatctac tatatccaca ccttctatgg
     4981 tttcaaaagg aaaaacaaat ttatcattta ccaaaggctt tttagaaatt ttatttctat
     5041 ccttaatatt taaaagatct atataagaaa ttttttgagc ttcatgagtt ttatcatcta
     5101 atttaacctt ataaattctt ttaaattgag ctacattatt aaaacaatgc ttagtatctt
     5161 caccttcttt gcaagcctta tctttagtgc cttctttttg atctctttct atgatgatgc
     5221 cgtatttatc atctatcata ttaaaatcac ctatggaatg gcttttatct tctaagaaat
     5281 atttataagt ttttccggtg aattttttat tttttacatc aaattctatg attcttagat
     5341 attctttacc tttttcattc tcataagcgt tgttattata aatgcttcct tctaaaagca
     5401 aataaagttt agaaccatct ttagagcttg ccatagcttc aaagccttta gaacgcttga
     5461 tattaaattt ctcattttct ccatcaggct tatcgctaaa ttttaaactt ggattatcag
     5521 gagaaataag ttttttaccc tccacataca catcaaaaac ttctttcaaa ttcccattct
     5581 tatcaaaatg aagcaaataa ggaccaaatt catcacctat ataaaattca tcattgataa
     5641 cctgtatact ctcagtatca aaatcagccc cacttaaata cctttcttta gttgtttcgg
     5701 tggttatagg ataggggtat tttttatcac tatctttaaa aaaaactgtt tttaaaagtt
     5761 cgtattttga gtttttaaaa tcaaatttaa actcgtgagc ataaagcata gaatcataag
     5821 aattatactt tttacccaag ccattatcgc taattaccca aaaaacatct ttttttggaa
     5881 tatattttat cccactatgt ccttgtatag gttgattttt aaaaggtaaa taaaaatctg
     5941 tttccctgtt tcccttagat ttaaaagttc caattttttc ttctctagtg atatttgcaa
     6001 atttcccata agttttaaaa aaatcaggag catccttagg aggttttact gtacttttag
     6061 aatctatgat aatatgccct gctaaattgg cctcatactc ttgaactcca aataaaacac
     6121 tgcaaagcat agcacttgtt aaaataacct ttttcatcca atctccttta tttcatatcc
     6181 actataactt tttcttgcca aagttgtggt aattctttag cgcttttttc ccaagctttt
     6241 tgatctttga ttgctcttgc atttttgtat tgctcacttg gtaaaagttt ggcttttata
     6301 tcatctggca aggtaatatg atcaattctt attggccttg cataaccttt tgctagattg
     6361 atttgtcctt tatcagaaag tataaactca cgagctaatt tagccgcatt tggatgtttt
     6421 gcgtatttat tgataatagt tgtataaccc gaaataacac taccatcagc agggattaaa
     6481 acttcataac gatctttgcc cactttatct ctatagccta aaccattaaa atcccaaact
     6541 aaacccactt caacttcacc tttttcaaga ttggctatac ttacatcatt atttacaagt
     6601 cttccttgtt tagctaaagt attaaaaaaa gctaaagcag gacttaaatc tttttcatcc
     6661 ccacctaagg cataattagc tgccaaaact gcactcacag cttgagctgc tacacttaca
     6721 tcacccacgg taattttata atttccctta agcaaatctt gccaagtttt aggtatatct
     6781 tttactacat ctttattgac tataaaagct atggttcctg tataagctaa aagccaattt
     6841 ccatctttat ctttagccca agttggaatt tgatcccagt aacttgtctt aaaaggctga
     6901 gccactcctt gtttaaccgc tatctctcca aaagaagccc ctatatcccc tatatcaccg
     6961 cttgcatttt tcttttcggc tttaaattta gcaatttctt gagctgaact catatctgta
     7021 tcactatgtt ctatgccata aagattttta agatctgccc aagtatcctt ccagtttgcc
     7081 caagtatcag gcatagctaa agaatttacc ctaccttctg cttgcgcagc tttaatcaaa
     7141 ttctcatcaa tagcttgtga atttgaaaac aataaggcaa caagacctaa acttaagaaa
     7201 aattttttac tcattttttt cctttcaaaa aatattttgg aaatttaatg agttttagaa
     7261 acattttaga aacaagttaa tttttaagca aacaaggtta taattttaaa gtcataaaca
     7321 aggagcgatc atgctttata tttatatcaa aactcaaaat gctttagttc aaagaatcaa
     7381 ttttaatctc gatagccaag aactaccgca aaatatttta tggattgatt tacttcatcc
     7441 aagtgcagca gaaattgctt ttatatcaag tgaatttaat cttgagtttc ctacaaaaga
     7501 agaaagggaa gaaatagagc ttagcgcaaa atattgggaa gataatgcga caataaccat
     7561 caatgctcat tttttagtaa gagatcttaa aagtgatgaa gaagatagga atttaatcaa
     7621 gcttcgcaca gaaattgtta cttttgctac cgctaaaaat atcttattta ctataagata
     7681 taacgaattt agcacttttg aagaaattca agcaaggatt ttagctagtc cgaagaattt
     7741 tgaagatggt tttgatatta ttgataaaat gtttgaagta cgcgttgaaa aagatgcgga
     7801 tttactagaa tggatagata aagaagcaag acgcttaaga acaagtgttt tagaaaaaaa
     7861 agatgaatat agttatgatg aaatgctaaa ggatatttca agtttgcaag agcttaatat
     7921 gcgcgtaaga gattctttat ttgataagcg tcgtgctatg acttctttgc taaaaagcga
     7981 taaaatcgat aaagatataa aacaaaatct cactatagtt ttaaaagact taaattcttt
     8041 ggttgaattt agtgtttcgc aacttaatat cttagataat attcaaacta ttttagccag
     8101 ccaaatcaac atagaacaaa acaaaatcat taaaattttt accgttgcaa ctgttgccat
     8161 gatgccacct actttaatag gaactgttta tggtatgaat tttaaattca tgcccgaact
     8221 tgaacttcac tatgcttatc ccatagtgct tggcgtaatg gtaatttcta tcattttacc
     8281 tttggttgtt tttaagaaaa aaggatggtt ataaaaattt attaaggaga aacaatggat
     8341 acaataaaca taggaatttt aaccctaagc gatagagcaa gtagtggcat atacgaagat
     8401 aaagccactg ctgaaattga aagagtgtta aattcatata taaaaaatga tattatttat
     8461 cataaagaat taatccctga tgattatgat ttgatcatta aaaaattact ttatctagca
     8521 gatgaaaaaa aatgtgattt gattgttaca agcggaggta caggtccagc acttcgtgat
     8581 gtaaccccag aagccacgga agctatgtgt gataaaatga tgccaggttt tggagaactt
     8641 atgcgcttag aaagtttaaa atatgtccca acagctatac tttcaagaca gagtgcagga
     8701 attcgcaata aatcttttat cattaattta ccaggaaatc ctaaggctat aaaagaatgc
     8761 ctagagcctg tttttccggc tataccttac tgtatcgatt tgatagaagg tgcttatata
     8821 gaagcaaatg atgaagttat taaggttttt cgccctaaga aaaaatgtca aaattaaaat
     8881 ttattagctc tgataagtct gcttaattgt ctagcaagca gacttgccga agcttcatct
     8941 ttgcttatct tttgcacttt atttttaaac ttacaaagtc tgtcatctaa aatcacatca
     9001 ttgattggaa ttttaggctt ttctttttgt ttttgtgaaa tctttttctt aaaaaacatt
     9061 ctttaatcct ttttttataa atatacacca acttagttga aaagaatatt attttagatt
     9121 ttaaactatt aactttattt cattatttta agctagaatt cgcaaaaaac caatcaagga
     9181 aaaataatga ctttaattgc aattttatgt ctttacacag cacttttatc ttggatttcc
     9241 tatgctcaaa ttcgtttctt agaaagagaa aaagacaaac aagctcaaat tttaagcgaa
     9301 aaagactatc aaaatgcagc agatattgcc atcgaaaatg aaaaatttaa actattttcc
     9361 aatttttata atttaatcat caatattgca tggataggtt ttggattttt atatcttaaa
     9421 gaattgctta tcttaaacaa cactcgtttt gaaaatactt tatttttatt atctttttta
     9481 ataatcacaa gtattttaaa tctaccttta agtatttatg aaagttttat caaagataaa
     9541 gcccatggtt tttcaaatat gactgtaaaa ctttttatca aagacactat gaaaagtctt
     9601 attttaactt taatatttgg atttttaatc ctttatgctt tgcttttttg ctatgatttt
     9661 tttggaactt tttggtggat tgcggccttt atttttgcct tttgtattat agtgattata
     9721 aatctcatct accctacctt aatagcacct atttttaata aaatgaaaaa actagacgat
     9781 gaaaatttgc tgaaaaaaat cagctctttg atgaaacaat gtgggtttag tgcaaatggg
     9841 gtttatgtta ttgatgcaag caaaagagat aagcgtttaa atgcttattt tggtggactt
     9901 tttaaaagca aaagagtggt gctttttgat acattattaa aagccttaaa tgaaagagaa
     9961 cttttagctg ttttaggaca tgagcttgga cattttgttc ataaggatat tatcaaagct
    10021 ttatttaacg gcgttataat tatgttttta cttttttttg tttttgcaaa tttacctgaa
    10081 tttgtttact tagaaagtca tctagaagga gtaaatggtg gcgtgtttgc tcttttattt
    10141 atcttggcaa atatttttag ctttttaatc tctcctatac ttaacgcctt aagtagaaaa
    10201 aatgaatttg cagctgatca acacggagct aaagttacaa gcaaagaaga tatgaaaaat
    10261 gcattgatag ctctagcaag agaaaataaa gcttttatca aaacaagtaa aatatatgca
    10321 tttttttatc tcagtcatcc aagtattagt gatagaatca aggctctttc ttgactataa
    10381 aaaatgctct tatggaagct aaatctagct taaaaggtta tgaaaatgaa gcagtattta
    10441 tactctgtga atatctaaaa aaagataaag cttggttatt tttaaaccaa gatataaaaa
    10501 tagatcatga accttatttt gagcttataa agcgttttaa atctggagaa ccttttgaat
    10561 atatatttga aaaagtggat ttttggggct tagaatttaa tataaaaaaa ggcgttctaa
    10621 tccctcgcta tgatagtgaa attttacttt ttcaaatttt aaatttatgc aaaaaaaata
    10681 cttttaatgg gattttagaa ataggatttg gaagcggaat tttaagcatt gttttagcca
    10741 aagaacttga attaaaaatc acagcctgtg atatcaatcc caaagcctta gaattagctt
    10801 tagagaatgc caaattacac aaagtcgatc acttgattga ctttaaactt tgtcatttta
    10861 agcaaattaa agaaaattat gattttattt tttcaaatcc accttatatt aaaaattcat
    10921 atcctataga tatttgggtg caaaaagaac cgaaagaggc tttatttggc ggagaaaaag
    10981 gatatgaaat tctagaagaa atcatacatt tttcccttga taaaaaagtt aaatttttag
    11041 cttgcgaatt tggctatgat caaaaagaaa ttttggaaaa aattttatat caaaataatt
    11101 tcattgttga ttttttcaaa gatgaacaag gttataatcg tgcttttata gctaaattta
    11161 caaatatgcg ttatgataaa aaataaaagg agaaactctt gaaagctgtt aatttatttt
    11221 tacttgcctc tatcataggg gttgaactca tactaggaat agttgttgca ccaacaattt
    11281 tttttcctca aaatcttata ggagaaggag tgttgagcca ttttcaaagt ggcttaatga
    11341 tgacgcaaat ttttattaag atgggatatt tgctgatttt tgtttcagtg gttaattttt
    11401 tatatgaaat ttattctctt ataaaagatg aaatgaaatt taaaataaaa ttttcaaaat
    11461 ttatgctgag tttgcttatt ttgattttaa gcttaatatt tgttttttat tttactaata
    11521 ccataattga actccaaaac ttaggcgaaa acactacaaa aactcaagaa tttatcagca
    11581 tccataatgc aagtgaagtg gtgattaaaa tcatcttgat aatgcaagtt tttttatatt
    11641 tcttaagctt taaaatagca aaaaaatgat aaaatattaa ataaatccaa aagagaagga
    11701 gtaggccatg atgatctctg atgcaactat aatgcaacaa aattattatt taaataatgc
    11761 acaaaaagct agcgataaag ctttagaaaa tattgcagct gttcgcgcaa taagtggagt
    11821 tgatagtgct aatttagcta ttgctgattc tttaagatct caatcaagca ctatagatca
    11881 aggtgtcgca aatgcttatg atgctatagg ggttttacaa attgcagatg ctagccttac
    11941 caatatctct caaagcgcag atagacttaa tgaactttca gtaaaaatga acaatgctgc
    12001 acttaatgat tctcaaaaag gaatgctaag aacagaagca acacgcatac aagaatccat
    12061 caatgattct tttaataatg caacttataa tggaaaaaat gtctttcaaa ctatgaattt
    12121 tgtagtaggt agcggaactg aaactacaaa tttaaatcca ttagcaacag atggattaag
    12181 catagataat caagatagta ttacaaattt tatggatcaa cttggaagtt taagaagtga
    12241 aataggctca ggtatcaatg ccatcacatc aaatattaat gcaagtgttc aaaatagcat
    12301 caactcaaaa gcagctgaaa ataatttact aaataatgac atggcaaaaa atgttaatga
    12361 ttttaatgcc aattatctaa aagaaaatgc tgctgctttt gttgctgcgc aatccaacat
    12421 gcagcttcaa agcaaaattg ctaatttatt acaataaaat aagccctaaa tagggcttat
    12481 tttttatcaa aatgacttta gagcaaattt tagaaaaaac caaaaacgtt cgtcttgtag
    12541 ccgcaagcaa gtatgtcgat gcaagtataa ttgaaaagct ttttgatcaa ggtatagtag
    12601 aatttggaga aaatcaagtc caagctctag cacaaaaaaa agaaaatctt gatgaaaaaa
    12661 aactagacat aaaatggcat tttataggaa cgctacaaag caacaaaatc aatctcttaa
    12721 tcaaacaaaa acctatatta tggcactctt gtaatggtat taaaatagct aaagctatgg
    12781 acaaaagact tgattataaa ttaaatactt tattagaaat caatagtgca aatgaaaata
    12841 gcaaaagcgg tctagatcca aatcaagccg tagaagaata tttacaaata caagaagaat
    12901 gctctaattt aaatctttgt ggcgtaatga gcataggatc acacagccaa gataaagaaa
    12961 atattataaa aagctttgaa actacattta aaatttatga aattcttcaa aaacatgggg
    13021 ctaagatttg ctctatgggg atgagtaatg attttgaaat tgctataaaa tgcggatcca
    13081 acttggtaag actcggaagc attttattta aaaatcttaa gtaaaacaat cttacttaag
    13141 catatttatt agaaatttcc tctactatac tatcagagat aataaaatct gtatgataaa
    13201 gcaggcaaga tcccgcgcta ataactttta aaacaagttt tttattattt ttttcattag
    13261 gattatgtgc atttctagca atttcatgaa tttcatagat taattctcta tttaaccttg
    13321 tcaaatctag ctctatgata tttttttcaa attccttagg ttctgcggta aaatgatttt
    13381 cttctttatt tttaaaatct ttttttgtgc caaatttttt tatagcttta atctcaccat
    13441 cttcaagact ttgcaagtct ttaattgctt ttaaaaaaaa gctgggcttt tcccctcctt
    13501 cagctttaaa tcccaataca aaaccataag cattattttt caaattttca tctttaatga
    13561 tattttctat ttcttctaca ttactttcaa atacagtagc atcaaacgaa gaataataat
    13621 ccaaaatttc aattctacca taacgcttat tatttttact catcatagat ttaaaatctt
    13681 caattttacc tatacttaaa atttctccat tgttttttaa accttcaaac tctaaacttt
    13741 taacataatc tatggcatta atttgttcat aaaatcgatc taaaggatgg cctgaaacat
    13801 aaattcctaa aatttctttt tcatatccca atttttccat cacttcaaat tcttcatttt
    13861 tgggagtaaa atttacttga acacctgaag ttaactcctc ttcaccaaaa agagaacttg
    13921 cagcattttt tcttacttca gccattttac gcgatgcttc gctaagattt tccatattat
    13981 caaacaaagc ttttctagta aaaccaaact catcaaaagc ccctgcctta ataagacttt
    14041 ctaatgttct acggtttatc ttagtaggat ctatcttacc taagaaatca ttaatatcct
    14101 taaattctcc atcttgcctt gcttcaagta aattttcaac tgcaggaata cccacacttt
    14161 ttatagcccc aagtccgtat ataatagcat ccttgccatc ttgctctaaa gcactaaatt
    14221 cacggatcgc tttgttaatc gatggaggta aaagtttaat attcattttt ttcatctcat
    14281 caatataaac agcaatttta tccacattgt tttcttcgct tgttaaaagc gctgccataa
    14341 attcactagg ataataagtt tttaaataag ctgtttgaaa agtaatcaac gcataagccg
    14401 cagagtgaga tttattaaaa ccatatcctg caaattttac gataagctcc cataaatcct
    14461 cagcttttgc tctatcatat ccttgttttt ctgctccatc tgcaaaatca gttttaagct
    14521 ttttcatctt ctcaggatct tttttaccca tagcacgacg cactacatca gcacctccta
    14581 aagaaaagcc acctataatt tgaacaattt gcataacctg ttcttgataa acaataatcc
    14641 cataagtagg ctctaaaacc ttttctaaac tgtcaaaagg atattctata ctttttaaac
    14701 catgctttct gtcgataaaa tcatcaagca ttcctgattc catagggcct ggacgataaa
    14761 gcgcaagaac cgcaatgata tcttcaaaac gctctggttt taagcgtgca tttaagcttt
    14821 gcataccgcc tgattcgatt tgaaaaattc ccaaagtatt tccactttgt atggttttat
    14881 aaactttgct atcatttaca tctatagttt cccaaataat gtctttattg taacgctttt
    14941 taataagctt gatcgcatta ttgattactg ttaaggtttt aagacctaaa aagtcaaatt
    15001 ttatcaaatc tacatcttct aaatgatctt tagaatactg cgttaccaaa tgtctttcat
    15061 catttttact ttgtctaaaa agcggagttt tcttccataa actttcatta gaaattacaa
    15121 cacctgctgc gtgcataccc gcattgcgat ttaatccttc taaagctctt gcatactccc
    15181 aaacttcagg acctttagga tgacgatcaa taaattcttt gattttaggt tctttttcat
    15241 aagcagcatc aagagtgatt ttaagctctt caggcacaag tttagcaagc tcatcagcat
    15301 cttgaatact catatcacaa actctagcca catcacgaat caccccttta gccaaaagtt
    15361 taccaaaggt aatcacctgt gcaaccttat ccgctccata tttatcaatc acatagtcaa
    15421 tcacttcagc acgtctgtct tgacaaaaat ccacatcaat atcaggcatg ctcacacgct
    15481 caggatttaa aaaacgctca aaaagtagac tataaggaat aggatctaaa tccgtaatcc
    15541 ttaaacaata agaaaccaaa cttcctgcag ctgatcctct tccagggcct actggaatac
    15601 ctttatcttt agccacttta ataaaatcat gaacaataag catataacct gaaaatttca
    15661 tatttttaat gatgttaatt tctacttcaa gtctttgttt gtattcttca tgcttgcttt
    15721 catcgataaa ttttaatctc tcttcaagtc cctttttaca aagttcttca aaaactatgt
    15781 catcattatc aaagctaaat tcttttgttt cttcaggtaa gataatatta tgatctttag
    15841 catattctct tgtaaattta aaattcggtg gagtgggatt gccaagatta agctctaaat
    15901 tacatttttg cgcgatttct tgtgtatttt ctatagcttc tggaatatct gcaaaaagct
    15961 cactcatttg ctcagggctt ttaacataaa attcatgcac actatgacgc attctatcag
    16021 ggtcattaag tttttttccc atagctatac acataaaaac ctcatgggca gccgctcttt
    16081 ctttaaaagt ataatgcgta tcatttgtag caataatttt tatatttaat tctttagaaa
    16141 gtctgataat atcatcatct atcattcttt gatcacctat accatgacgc atgatttcaa
    16201 aataaaaatc atctttaaaa acttttttat accataatgc tgcttctttt gctgcttcat
    16261 agccttttgc accaaaacgc acatttcttt cactataagt atttaagtgc caatttactt
    16321 caccttgcaa gcaagcagaa gaacaaataa gaccttcgct ataatcttcc aaaagctttt
    16381 tattgatacg cggataataa tacaaacctt taatataact ttgagaactt aaatacatta
    16441 aattttgata tccgatctca ttttttgcat acaaacaaag gtgaaaacgc tgacgagaac
    16501 ttttatcatc taattcatca tgattatgta aatacgcttc cataccaatg ataggtttta
    16561 aaccttgtgc tttcattgtt tgataaaaat caattgcccc aaacatattt ccatgatctg
    16621 tcatagcaac acttgtagca ccctgctctt ttaaagtcaa agctaattct ttaagtttat
    16681 tggctccatc aagcaaagaa tattctgtat gtaaatgcaa gtgtgtaaat tgactcattt
    16741 tcttccttta attttttaag gcttatttta attttgataa aaattataaa tttttctcgc
    16801 tgaatttgaa agaaattagc cctaaatttc aacttaaatt tgacaaaaag gcaaaaattc
    16861 agccaaaata aactataata aagtctaaga ttttaatctt aataaaaaga acttttcaaa
    16921 ggatgaaatg atgaaagtaa aaattgctta ttgcaatctt tgaaattatc gcccacaagc
    16981 tgcaaggatt gcagaggaac tacaaagcga tttcaaagat gttgaagtag aatttgaaat
    17041 tggcggcaga ggtgatttta tcgttgaagt agacggaaaa gttatcttct ctaaaacaca
    17101 acttattaat tgcgaaagtg aaagatttcc atatcaaaat gaaattaatc aattaataaa
    17161 aaatagagtg taatcaaaca ctctatcata acattttctc atattcctta ccaatatata
    17221 tgttttgctc atactcgata ataggacgct taatacaact tggattttct aatacaattt
    17281 tttcaagttc tttttcattt aaatttttaa ctttttcttt gtttaagcca agttttttag
    17341 aagttaatcc agcagtattg ataagttctt caaaagattt ttgttttaac catgtgtata
    17401 aaatatcttg attaatcttt ttaatatcca taaaatcaaa cacaatacct ttttgtgtta
    17461 aagcatctat agctttcttt acagaattgc aatttttaat accataaaat ttcattttct
    17521 agcctttttt accaaatctg cgattaaaaa agcaagttct aatgcttgat ccgcattaag
    17581 tcttggatcg cattgagtct cataacgatc ttccaagctt tgagcagtaa cattgcttgc
    17641 accacctgtg cattctgtta catctttccc agtcatttca agatgcactc cacctggata
    17701 aaccccttcg cttattgcaa tctcaaaaaa agatctcact tcttgcataa ttttatcaaa
    17761 ctcacgtgtt ttaaaattgc ctgcttttac cgtatttcca tgcataggat ctatgctata
    17821 tactaaattt aaaccttcac ttttaagttt agagaaaatt tttggcaaat tattgataat
    17881 tttatctgca cccatgcgga taataatatt taatcttcct tcttcattat ttggatttaa
    17941 aacatttgct aaagctatga tatcatcagc acttgcacta ggtcctattt taacccctaa
    18001 aggatttttt actccactta aaaaatgcac atgagcttca tcaagcgccc ttgttctttc
    18061 acctatccaa agcatgtgag ctgaacaatc gtaaatttct ccacttaaac tatccactct
    18121 agttaaagct tcttcataag gcaaaagtaa agcttcatgt gaagtataaa cactaacttc
    18181 tcttagactt ggagtattac ttgtattaat tccacaagct tccataaaag ctaaagcttg
    18241 tgaaattttt tcactgatat cagtatattg cttatggagt tcactctttt ttaaaaagcc
    18301 caaattccaa cgatgtactt catgtaaatc tgctaaacca cccttagcaa atccacgcaa
    18361 caaatttagc gttgttgcgc tttgataata agcttcaagc attctatgtg gatcaggaat
    18421 gcgtgcttgt tcactaaatt caaaaccatt aataatatca ccacgataac taggaagact
    18481 tataccatct aactcttcaa aatcactact tcttggcttg gcaaactgcc ctgcaatacg
    18541 accaattttt ataacaggac atccaccagc aaatgtaagt actatagcca tttgaagtaa
    18601 aattttaaac atatcacgga tatttacagc gccaaaattt tcaaaacttt cagcgcaatc
    18661 tccaccttga agtaaaaaag cttctttttt acaaactctt gctaaagact tttgaagatt
    18721 tctcacttct ccagcaaaaa ccaaaggagg aagtttctca agtcttgcta aaactctatt
    18781 catttcctct tgatctggat agataggttg ctgttttata ggatagtttt tccaagaatt
    18841 cttagcccac atggtttttt ctttcgtttt atttatcagc ttcctctata agttgaataa
    18901 ccaaaaggag aaagggttat tggaacatga taatgtttct gatctttaga aagctcaaaa
    18961 cttacctcta caaaaggata aaaagtattt attttgtgtg atgtgtaata gtcttttgta
    19021 aaaaatttaa gcttataaat tccaaaagcc ctattttcag ctttttcata tggtaataaa
    19081 tctcctattc taccattttc ttcggtaaat tcttcactta cttttttcca ctgttgattt
    19141 gcttccaact tataaagctc aacttttact ttaggagcag gttgtccaga agtaatatcc
    19201 aagacatgag tacttaattg atattcagta gcactcaaaa acattggcac gcttgctagt
    19261 attaataaag tttttttaat agaaaacatt ttctc
//
LOCUS       DAPIWU010000020        18340 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.020, whole genome shotgun sequence.
ACCESSION   DAPIWU010000020 DAPIWU010000000
VERSION     DAPIWU010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18340
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.020"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            35..316
                     /locus_tag="RJ285_000570"
                     /pseudo
     CDS             35..316
                     /locus_tag="RJ285_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782082.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            323..622
                     /locus_tag="RJ285_000571"
     CDS             323..622
                     /locus_tag="RJ285_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7383372.1"
                     /translation="MALGLILCALVNVLLGFSNSFYAYVGFVIALGVFQGMGVGPSFI
                     TLANWYPKKERGIYTAVWNISHNIGGGIVAPIVSLSGFALAAFLGVSLADFNETH"
     gene            659..841
                     /locus_tag="RJ285_000572"
                     /pseudo
     CDS             659..841
                     /locus_tag="RJ285_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778094.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1546..2298
                     /gene="peb3"
                     /locus_tag="RJ285_000573"
     CDS             1546..2298
                     /gene="peb3"
                     /locus_tag="RJ285_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HDV7383373.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            2395..3489
                     /locus_tag="RJ285_000574"
     CDS             2395..3489
                     /locus_tag="RJ285_000574"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDV7383374.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELVNLTLSQTMDAVLCIDSPAFNI
                     PFAKALKKAGNKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            3501..3986
                     /gene="greA"
                     /locus_tag="RJ285_000575"
     CDS             3501..3986
                     /gene="greA"
                     /locus_tag="RJ285_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDV7383375.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIARAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            4119..4754
                     /locus_tag="RJ285_000576"
     CDS             4119..4754
                     /locus_tag="RJ285_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDV7383376.1"
                     /translation="MGDIFDLLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDF
                     NLSCFFKKVKIFNLQKQPIKLNLHTSKGNNLVLNSAFIKLAHGDIFLPPLLQFTLKTL
                     RNHYLLVFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWV
                     CEGHYHQNHQINKENIKYLNLASFAYERSFFVVEYQQEIKFREQKLRGQNV"
     gene            4747..5703
                     /locus_tag="RJ285_000577"
     CDS             4747..5703
                     /locus_tag="RJ285_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HDV7383377.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQVYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIIFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            5707..8016
                     /locus_tag="RJ285_000578"
     CDS             5707..8016
                     /locus_tag="RJ285_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDV7383378.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAEPEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNVAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            8021..8542
                     /locus_tag="RJ285_000579"
     CDS             8021..8542
                     /locus_tag="RJ285_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HDV7383379.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            8542..9165
                     /gene="serB"
                     /locus_tag="RJ285_000580"
     CDS             8542..9165
                     /gene="serB"
                     /locus_tag="RJ285_000580"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDV7383380.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            9165..10142
                     /locus_tag="RJ285_000581"
     CDS             9165..10142
                     /locus_tag="RJ285_000581"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDV7383381.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGINVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMH
                     FKKPLMNFEIYTELNQIISQNEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(10143..10565)
                     /locus_tag="RJ285_000582"
     CDS             complement(10143..10565)
                     /locus_tag="RJ285_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HDV7383382.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(10562..13831)
                     /gene="carB"
                     /locus_tag="RJ285_000583"
     CDS             complement(10562..13831)
                     /gene="carB"
                     /locus_tag="RJ285_000583"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDV7383383.1"
                     /translation="MPKRTDIKNILLIGSGPIVIGQACEFDYSGTQAAKTLKEQGYRV
                     VLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLSKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAVNPTNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(14092..14841)
                     /gene="mreC"
                     /locus_tag="RJ285_000584"
     CDS             complement(14092..14841)
                     /gene="mreC"
                     /locus_tag="RJ285_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDV7383384.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(14831..15871)
                     /locus_tag="RJ285_000585"
     CDS             complement(14831..15871)
                     /locus_tag="RJ285_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDV7383385.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(15882..17105)
                     /gene="clpX"
                     /locus_tag="RJ285_000586"
     CDS             complement(15882..17105)
                     /gene="clpX"
                     /locus_tag="RJ285_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HDV7383386.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(17098..17889)
                     /gene="lpxA"
                     /locus_tag="RJ285_000587"
     CDS             complement(17098..17889)
                     /gene="lpxA"
                     /locus_tag="RJ285_000587"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDV7383387.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(17889..18329)
                     /gene="fabZ"
                     /locus_tag="RJ285_000588"
     CDS             complement(17889..18329)
                     /gene="fabZ"
                     /locus_tag="RJ285_000588"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDV7383388.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
BASE COUNT         6260 a         3098 c         2890 g         6092 t
ORIGIN      
        1 ataaaaatat aaagttagta aggatggttt aaatatgttt gattttttca aacctaaggc
       61 aaaagctatt aaatttcctc tttaggaaat tttacctaga tattacaaaa tgagaacttg
      121 gagtttaagt ggggttttta taggatatat gggatattat cttgtgcgaa ataatatcac
      181 tctttcaact ccatttatac aaaatcaact taatctcagt aaatcagaca tcggaacaat
      241 cacaggctca atgcttatag cttacgggat tagcaagggt gcaatgagcg ttataagcga
      301 caaagctggt cctaaaaaat acatggcttt aggtcttatt ttatgtgctc ttgtaaatgt
      361 tttacttggt ttttcaaatt ctttttacgc ttatgtaggt tttgttatcg cgcttggggt
      421 ttttcaaggt atgggggtag gtccttcttt tatcactctt gcaaactggt atcctaaaaa
      481 agagagggga atttacacgg ccgtttggaa tatctcacat aatataggag gcgggatagt
      541 tgctcctata gtgtcgcttt ctggatttgc tttagcagca tttttaggcg taagcttagc
      601 agattttaat gaaacacatt agcatatcaa tcatttttat gttcctgctt tttgtgctgt
      661 gcttattagc ctttatatgc tttatgcagt caaaggaagt cctaaaaatg aaggtttggt
      721 tgatattagc gaaatcaacg aaatgagagg tattaaaacc gaagaaatta aagctgtaga
      781 aagtccaaat ttaagcggtc ttgaaatttt ttatcattat gtccttaaaa ataaaaatgc
      841 ttggtatgta gcttggatgg atacttttgt ttatatggtg cgttttgggc ttatttcttg
      901 gcttcctatt tacttgctag aaacaaaagg ctttaataaa gaacaaatag gtattgcctt
      961 ttggcttttt gaatgggctg ctataccttc tactttactt gcaggatata tttcagataa
     1021 aatttttaaa ggctatagaa tgcctcctgc tataggcgcc atggtgatta ttttctttat
     1081 gattattgga tattttactt caaataatct ttatatggtt attttctttg cagctatggc
     1141 ggggtgttta gtctatatac cacaattttt agcaagtgtg caaactatgg aagtcgttcc
     1201 tgcttttgca gtaggatctt gtgtaggatt tcgtggcttt atgagttatg tagtcggcgc
     1261 ttcacttgga acaaaagcta taggttgggc tgtggattac tatggtagtt ggaatgctgg
     1321 tcttatcatg ctccttagtg cttgtattct ttgtatactt tgttctactt tatgtcattt
     1381 tagcgctaaa aagaagcatc aataacaatt ttaacttttg cttgcaaaaa taccaagcaa
     1441 aagttagatt taataatatt tttgttacat tataactatt tattaacata caatttctaa
     1501 aatcttacct tcaatcaata aaaatttatc ataaaaggaa atactatgaa aaaaattatt
     1561 actttatttg gtgcatgtgc cttagctttt agtatggcaa atgcagatgt aaacctttac
     1621 ggaccaggtg gcccacacac ggccttaaaa gatatagcaa acaaatatag cgaaaaaaca
     1681 ggcgttaaag taaatgtaaa ttttggccct caagcgactt ggtttgaaaa ggctaaaaaa
     1741 gatgcagata ttttatttgg cgcttcagat caatcggctt tagctatagc gagtgatttt
     1801 ggaaaagatt ttaatgtgag taaaatcaag cctttatatt ttagagaagc catcatactt
     1861 actcaaaaag gcaatccttt aaaaatcaaa ggtttaaaag atttggctaa taaaaaagta
     1921 agaatcgttg tgcctgaagg tgctggaaag agcaatactt ctggaactgg agtttgggaa
     1981 gatatgatag gtagaactca agatataaaa accatacaaa attttagaaa caatatcgtg
     2041 gcctttgttc caaatagtgg aagtgcaaga aagcttttcg cacaagatca agccgatgct
     2101 tggatcactt ggattgactg gtcaaaaagc aatcctgaca taggaactgc cgtagctata
     2161 gaaaaagatt tggttgttta tagaactttt aatgtggtag ctaaagaagg tgcgagcaaa
     2221 gaaacacaag attttattgc ttatttaagt tctaaggaag ctaaagaaat ttttaaaaaa
     2281 tacggctgga gagaataaac cttcatacac gctttttagc gtgtattctt gcataacttc
     2341 ttttaattaa gccaaaataa gataaaatgt ttaaaatatt gataaggaaa ttttttgaaa
     2401 acctttttag tttgtgcttt agagccttca gcaaatttgc atttaaaaga agttttaaaa
     2461 gcttataaaa aagattttgg tgaatttgaa cttcatggga tttatgatga gagtttatgc
     2521 aaagaatttg atttaaattc taaaccactt tatagctcac atgaatttag tgctatgggt
     2581 tttatagaag ttttaccttt gattttcaaa gcaaaaaaag cgatcaaaga attagtgaat
     2641 ctaactttaa gccaaacaat ggacgcagtt ttatgtatcg attctcccgc ttttaatatc
     2701 ccttttgcca aggctttaaa aaaagcaggc aataaaattc cacgcattta ttatatcttg
     2761 cctcaagttt gggcgtggaa aaaaggtcgc atacctatca tagaaagtca ttttgatatt
     2821 ttagcttcta ttttgccctt tgataatcaa ttttttaaca aaagcaccta tataggccat
     2881 ccgcttttag atgagataaa agaatttaaa aatcaagaag acattaatca tacattttca
     2941 aaaaaagatg atgaaaaaac tatagccttt ttaccaggtt caaggcgtag tgaaattagg
     3001 cgtttaatgc ctatttttaa agaactttct caaaaattta agggtgaaaa aattctttgc
     3061 gttccctcat ttaatcttga aaaattagaa gtttatggtg atattagcga atttaagata
     3121 gaaagtaaca ctccaaaagt gcttaaaaaa gctgattttg cctttatttg tagtggaaca
     3181 gctactttag aagcagcttt agtgggaact ccttttgttc ttgcttacaa ggcaaaggct
     3241 atcgatattt ttatcgcaaa actttttgta aaattaaaac atataggact tgcaaatatt
     3301 ttttgtgatt tcgctggaaa agaagcttta aatcctgaat ttttacaaga taaagtcaat
     3361 gttttaaatt tatatgaagc ttacaataaa tatgattata aggcattttt tgctaaagtt
     3421 gattttttaa aagaatattt acaatttgga agtgctaaaa atttagcaaa aatcctaaac
     3481 gaaatataaa agggtaaatc atgcaaaaag aaccaatgag tcaatttggc tatgataagt
     3541 tagccgcaga attaaaagat ttaaaagaca atcaacgccc tgccgttgta atagaaatcg
     3601 atacagcaag aagtcatggg gatttgaaag aaaatgctga ataccatgct gcaagagaaa
     3661 agcaagcttt gatagaaagt cgtattgcag agcttagtga cttgctagca agagctcaag
     3721 taatcgatcc ttcgagctat gaacacgata gtgtgaaatt tggttcaagt gttgtgatca
     3781 tggatttgga tacagaaaaa gaaagcaaat atactctagt aggaatttgc gaaggaaatt
     3841 tagataaggg ttatatttcc atcgcatctc caatagcaag agctatgctt gggaaaaaag
     3901 aaggggatga ttttaaagtg cgtttgccaa aaggtgagag tgaatttgaa atcctttcta
     3961 taaattatga gcctttaaaa ttttaaggat aaaaaatttt actacaaaat ggagcgattt
     4021 taatcgcgga tgctcatgaa aatgaacaaa gaaagggatt ttgggaattt ttacaagcct
     4081 taaaaaaagg taaaatttcc acccctcaac tcatacttat gggtgatatt ttcgatttac
     4141 ttataggcga aatctctgct acacatgaat ttgctaaacc ttacatagaa cttttagaag
     4201 aattagcctt aaagattgaa attatatact tagaaggcaa tcatgatttt aatctttctt
     4261 gtttttttaa aaaggtaaaa atttttaact tacaaaagca gcccataaag cttaatttgc
     4321 atacaagtaa aggtaataat cttgttttaa atagtgcttt tataaaatta gctcacggag
     4381 atattttttt accacctctt ttgcaattta ctcttaaaac attaagaaat cattatttgc
     4441 ttgtattttt gaatttttta aatattatta ctcgtaattt tatttcaaat aaaattcttc
     4501 aaaatcaaaa caaaaaaaac cttttttatc aaataaaaga ttttgaaaat ttagcgaaaa
     4561 aaagatatga aaaatatgaa aatttaggat tttgggtatg tgaaggacac tatcatcaaa
     4621 atcatcaaat caacaaagaa aacattaaat atcttaactt agctagtttt gcatatgaga
     4681 gaagtttttt tgtagtagaa tatcaacaag aaatcaaatt tcgagaacag aaattgaggg
     4741 gtcaaaatgt ttgatgaaaa tatcgtgaaa acgggttcaa atgaaatgga gcttgtcgat
     4801 ttccgtatct ttaagcaagg gcacgataaa gtctatgaag gaatttatgg tgtaaatgtt
     4861 tctaaggtaa gggagattat aaaaatccca agccttacag aacttccagg tgtacctgat
     4921 tacatcgaag gtatctttga tcttcgtgga gtggttatac ctgtagtcaa tcttgccaaa
     4981 tggatgcaaa tcactgagcc agaaagcact atgctaaaac ctagagttat tattactgaa
     5041 tttagtaata ttcttattgg ttttatagtt cacgaagcaa aaagaattcg tagaataaac
     5101 tggaaagata tagaaccagc aactttttct acaggatcag gtgctttaga taaaggtaaa
     5161 attacaggtg taacacgcat tgaaaatgat gaagtgttgc taattttaga tcttgaaagt
     5221 gttgttgaag atttaggaat ttacgctcca aaaacagata tagattttgg aaaaatagaa
     5281 aaatttactg gaacagcact tatacttgat gacagcatga ctgctagaaa acgcgtcaaa
     5341 gaaatgatgc aacagatggg ctttcaagtt gttgaagcta aggacggcgt agagggcata
     5401 aacaaattag aagaattaag ccaagtttat ggtgaaagtt taaacgatac tttaaaaatt
     5461 atagtaagcg atgtcgaaat gccacaaatg gatggtttcc actttgctgc acgcattaaa
     5521 gaagatccaa gatttaaaga tattcctata atctttaact catctttatc aaatgaattt
     5581 atgaatgaga aaggtgttca agaagctggt ggagaaggct atcttgtcaa atttaacgct
     5641 agcgatttct tcaatgaaat tgcaaaggtt attaaaaaac atcaatctca agaacagggg
     5701 taaaatatgg aagatatgca agaaatactt gaagactttt tggttgaagc ttttgagctt
     5761 gttgagcaaa tcgaccatga tttagtagag cttgaatcaa atccagaaga tttagaatta
     5821 ttaaatagaa ttttccgtgt tgcacatacg gttaaaggat catcaagctt cttaaatttt
     5881 gatgttttaa caaagttaac tcaccacatg gaggatgttt taaacaaagc aagacatggc
     5941 gagttaaaaa taactccaga tatcatggat gtggttttag agtctattga tagaatgaaa
     6001 actttactta attccattcg tgataatggc aacgatactg ctattggtat ggatatagaa
     6061 ccaatttgcg caagattaac agctatttca gagggagagt ctcctgttgt ggcaacagat
     6121 tcaaatgaaa aatctactcc acaagcagaa ccagaagcac caaaacaaga aatagctact
     6181 ccagaacctg aagtagatgt taatcaatta agtgattctg aagttgaagc tgaaatagaa
     6241 agacttttaa aagttagaaa agctgaagat caagctcgtc gcgcacaaaa gaaacaaaca
     6301 acaaatgtgg cacctaaacc gactaacaat acagcaaata aacctacgga aagtggagag
     6361 aaaaaagttc ctgcttcagg tagtaatgct agcagtatgg atcaaaccat acgcgtggag
     6421 gtaaaaagat tagatcactt aatgaatcta attggggagc ttgttttagg caaaaaccgt
     6481 ttgcttaaaa tttacgatga tgttgaagag cgttatgaag gagaaaaatt ccttgaagaa
     6541 cttaatcagg ttgtaagtca attaagtatt attacaactg atgttcagct tgctgtgatg
     6601 aaaacaagaa tgcaacctat agcaaaagtt ttcaataaat tcccaagagt tgttcgtgat
     6661 ttaagtcgtg aattaggaaa gcaaatagaa cttgaaatta caggtgaaga aactgaactt
     6721 gataaatcta tcgtagagga aattggcgat cctatcatgc atatgattag aaattcatgt
     6781 gatcatggtg ttgaggatcc agcaactcgt gcagcgaatg gaaaacctga aaaaggtata
     6841 gtccaactta aagcttataa tgagggcaat cacatcgttg tagaaattac agatgacggt
     6901 aaaggacttg atccaaatgg cttaaaagca aaagctatag agaaaaattt gattaccgaa
     6961 agagaagcag atcaaatgac agacaaagaa gcttttgctt tgattttcaa gcctggtttt
     7021 tcaactgcgg ctaaagtaac aaatgtttca ggtcgtggcg taggaatgga tgttgttaaa
     7081 accaacatcg aaaaacttaa tggggtaatt gaaattgata gtgagttagg taaaggaagt
     7141 tcatttaaac ttaaaattcc tcttaccttg gcaatcattc aatctttact tgtaggaact
     7201 caagaggaat tctatgcaat tccacttgca agcgttcttg aaacagttag agtgccaatt
     7261 gatgatatct atactatcga aggtaaaaat gtattacgct taagagatga agtgctttct
     7321 cttgtgagac tttcagatgt atttggagtt aaacaagtcc ttgaaagcgg tgatcaaact
     7381 tatgtcgttg ttataggggt agcagaaagc aagcttggta ttatagtaga tactcttgta
     7441 ggacaagaag aaatagttat taaatccatg ggtgattatt tacaaaatat ccaaggtata
     7501 gcaggagcta caatccgtgg tgatggtagg gtgacattaa tcattgatgt aggcgctatg
     7561 atggatatgg ccaaagaaat taaagttgat attaaagcgc aattagaatc aagtgcgaaa
     7621 aaacctaaag aacaaccaag tgattataaa gtcttaattg tagatgattc taaaatggat
     7681 agaactttaa tgcaaaaagc tttagaaccg ctaggagtta gtttaatcga agcaacaaat
     7741 ggtgttgaag cattgaatat tataaaatct ggcgaacatg atattgatgc aatgcttata
     7801 gatatcgaaa tgccaagaat ggatggatac accttagctg gtgaaattag aaagtattct
     7861 aaatatcgca acttaccatt gatagcagtt acttcaagaa caagtaaaac tgaccgttta
     7921 agaggtgttg aagtgggtat gactgaatat atcactaaac cttattctcc agaatacttg
     7981 gaaaatgtgg ttagaaaaaa tttgaaacta ggataagaat atgagtaatg aaaaattaga
     8041 gcaaattttg caaaaacagc aaactcagat ggctggtcct gatgtcgatc aaagagaaga
     8101 tgatatcatc caacttgttg gctttgtagt tggagatgag gaatatgcga ttccaattct
     8161 taatatacaa gaaatcatca aacctataga atatactaga gttcctagtg tacctgatta
     8221 tgttctaggg gtttttaata tgcgtggtaa tgttatgccg ctcattgatc tagctcaacg
     8281 ctttcattta ggaagttcta aaatgacacc tcaaacaaga tatattgttt taagaggtga
     8341 gacaaatgga actggagttg gaggaaatgc tggttttgtt atagatagat taactgaagc
     8401 aattaaaatt cacagaaaca gaatcgatcc accacctgaa actttagtta aagacaaagg
     8461 tatgatttat ggtataggaa aaagagatga aaatatctta actatactca aagtagaagc
     8521 tttacttaag cgcgaatttt aatgattaaa ctttgtgttt ttgactttga tgctacttta
     8581 atggatggtg aaaccatcga tattttagct acagcgcatg gcaagggtaa tcaaacaagc
     8641 gaaattaccc gccatgctat gactggagaa cttgattttt tcgaaagtct tcaaaaacga
     8701 gtaagctttt taaaaggtat gtcttataaa aaagttttag aattaagtag cacacttcca
     8761 ctaatgcgtg gagcacatga acttatccaa tatttaaaat ctaaaaatat acaaattgtt
     8821 atttttagcg gtggttttca tgaaggcata aatcctgcta tgcaaaaact tggaattaac
     8881 ctcggttttg caaattatct gcatcataaa aatgacattt taacagggct agttggtggg
     8941 gaaatgatgt tttcaaattc aaaaggctta atgctacaac gattaaaaag ctttttaaat
     9001 ttgaaaacag atgaagtgat gtgtgttggc gatggggcaa atgatttggc aatgtttaac
     9061 gaaagtggat taaagattgc attttgtgct aaagaaattt tacgttctca agctgatatt
     9121 tgcatagata taaaagactt aaaagaaata ataaaggtaa tataatgaaa aatttttctc
     9181 tttggtgtga ttttatagaa aatagttttt tagataatga atttttaaat ttattatcac
     9241 atggaattaa tggcgctact tcaaatcctg ctatttttaa aaatgctatt ttaaattctc
     9301 caatttataa agataaaatt cttaaattaa aagaaaaaaa aacaaaagat atttatgaag
     9361 aattagcaat ttctgatatt caaaaagcag ctgataaatt agctcctctt ttttatcaaa
     9421 aaaatgatgg atttataagt attgaaatag atccaagact tcatgataac acgactctta
     9481 gtttaggcga agctaaaaga ctttatagtg ctattagcaa agaaaatgta atgattaaaa
     9541 taccagctac aaaagcttct tatgaagtaa tgtatgaact tatgaaaaat ggtattaacg
     9601 tcaatgctac cttaattttt tctcttgaac aaagtcaaaa atgttttgaa gctttaaatg
     9661 caggtttagt cgaatttaga aaaaacaata tagccttaaa agaacaaaat actagaacac
     9721 cacaagctgt tataagtatt tttgtaagtc gttttgatag acttttaaat cctaaggcta
     9781 aggagcaaaa tcgtattgga attttaaatg caaatttagc ttataacaat atctactcaa
     9841 aaaatgaacc taatattcgc gccttgtttg caagcaccgg agttaaagga gatgatctgc
     9901 caaaagacta ttatatcaaa gaacttcttt ttgagaattc tgttaatact gctcctcttg
     9961 atgcaataga ggcatttaaa ggaaaaatgc attttaaaaa acctttaatg aattttgaaa
    10021 tttatacaga acttaatcaa atcatttctc aaaatgaacg agaaaaagct tgcaatgact
    10081 tattaagtga cggcctagag caattttgta ttgcttttga agatatttta aaagctcttt
    10141 aattaacgta tttttatcat tttattcttt gaaagtttta atatttttga tgggatattt
    10201 tcgaaaaatt tctcatcaag tattatatcg gcaacacttc tagcccattc ttcatcaaat
    10261 tcttttccat gcttgtttgc cgaagatgaa taaaaatagc catttttact taaaaaattc
    10321 gcatgtttac actctttcac aatacgaatg gcctgattat tgggataaat aaaagttgtt
    10381 tttttagaac gacgtactaa atttttaaaa gattttggaa ttcttgctaa actttttaac
    10441 tcgcaaaatt tcgcagaagt gattaagcaa ggctgatttt tatctctacc ttttaaagca
    10501 ttaatctctt ctaaattttt acttaaaaat cctaccgtag tatctgtttg agctaaataa
    10561 atcaagattt aagccactct tgcaaactct ttacatctag gcaagattta ctctgtatag
    10621 ctttaatcga ttttgcacct gctaaagctg atcgtaaatt tgtaaaataa ggtattttaa
    10681 aacgaataat attttcacga atttttttcg tatcgccttt aaaactgtga ctatcgcttg
    10741 tattgataac taagtgaatt tctccatttt tcaatttatc ttcaacattg gggcgtcctt
    10801 ctgaaatttt atgtacaagt tcgcactcaa aaccactttc taaaatttcc ttgcaagttc
    10861 cccctgttgc cataagctta aagccaagct ttacatattc tgcagcgatt tttttggtat
    10921 attttttatc cttatctttt aaggagataa ataccacgcc ttgctctgga agatgattaa
    10981 acgatgcaat ttgacttttc gcataagaat ttgcaaaatc cttgcttata cccataactt
    11041 cacccgttga acgcatttca ggacctaatt ctaaatcact tccactaagt tttgcaaatg
    11101 gaaatactgc ttctttcacg ctcatatatt ttggagtttt agggcgtaaa attttagtat
    11161 caaaattaac cactttaaaa gtatcataaa attttaaagc ttcttttaaa tttccttgcc
    11221 acatcacacg cgttgccact tttgctaaag gaatacccgt agctttacta acaaaaggta
    11281 tggtacgact agctctagga tttacctcta tcatataaag ctcattatta tgtaaagcaa
    11341 attgtatatt taaaagtcct acaactccca aatttaaagc aatatctgcg gttttttgtg
    11401 caataaattc ttgcattttt tcatcgatat tgcaaggcgg caaagaacaa gcactgtcac
    11461 ccgaatgaat tcctgcttct tctatgtgct ccataattcc tgcaacataa acatctttgc
    11521 catcacaaat cgcatcaaca tcaatttctg tagcattgtc taaaaactga tcgatcaaaa
    11581 cagggctttt atcgcttaca tccacagctt cttgcatata gagtctaagt tcagcctcat
    11641 catttaccac gcgcatcgca cgcccaccta aaacataact tggtcttaca agcacaggat
    11701 accctatatc actagcctta agaaccgctt cttctacgct tgttgcagta gaattttttg
    11761 gctgattgat acctagcttt gtaataaatt cggcaaattt ctttctatct tctgccatat
    11821 caattactct tgcgctagta cctataatct tagctccaaa agcacttaaa cgcttagcaa
    11881 atttcaaagg agtttgtcca ccaaaatgca caatcactcc atcaggtttt tcacgctcaa
    11941 tcaccgctct taaatgttcg aaatcaatag gctcgaaata caaaatatca cttgtatcat
    12001 agtcagtcga aacggtttca ggattacaat tatacataat agttttaata cccatatctt
    12061 taagcgcaaa agaagcatgt acgcaagcat agtcaaattc tataccttgt cctatacggt
    12121 ttggcccccc acctataatc atcacttttt tttctttttt atccttagca tcgtttttac
    12181 tttgagtgag ttcgcttaca ttgatacttg aataaagata aggagttaag gcttcaaatt
    12241 cacccgcaca agtatccact tcactaaatt ctgcgatgat tttttgcttc attcttgcat
    12301 aataaatatc attttggctt aattctaaat tatctttcaa atttacaagc aaggctatca
    12361 ttttatctga aaagcccata gtttttgctt ttctcaaaag agccttattg tttaaaatat
    12421 ccatatcaat ttgttcttca aaatctacaa tttctttaat ctgtgttaaa aaccaaggat
    12481 ctattttaca aagctcataa agttcttcta cgctaaaacc ttccctaaaa gcttgagcaa
    12541 cataaagtaa acgcttttca ttggcattgc gaattttaaa aacaagatca tttctatctt
    12601 caaattttac cctatcaaaa ccacttaaag aacgctcaag cgaacaaagt gctttttgta
    12661 tactttcttt aaaagtgcgt cctatagcca ttacctcacc cacacttttc atagctgtac
    12721 ctaaagttgt atttgctcct ggaaattttt caaaggtaaa gcgaggaatt tttgttacaa
    12781 tataatcaat cacaggctcg aaagatgcag gagttcctgt aatatcattt ttaatctcat
    12841 ctaagctaaa acctactgcc aaaagtgttg caacctttgc tataggataa cccgttgctt
    12901 tagaagctag ggcgcttgat cttgaaaccc ttggattcat ttcaataact atcattctac
    12961 catttgttgg attgacagca aattgcacat ttgatccgcc cgtatcgacg cctatttcac
    13021 gcaaaatggc aaaagaggca ttacgcataa cttggtattc tttatcagtt aaagtaagag
    13081 caggtgcaac cgtgatacta tctcctgtat gcactcccat aggatcaaga ttttctatac
    13141 tacacacgat aatgcaatta tcatttttat cgcggataac ctccatttca tactctttcc
    13201 atccaagcaa actttcttcg ataagaattt catggattgg cgaaagtgct aaggcagtat
    13261 tagcgagttc tttaaattca tccatattat aaaccacacc acttccagca ccccctaaag
    13321 tataagaagc acggatcatc aaaggaaagc cgatttcatc tacagctttt aaagcttcat
    13381 cataattata cgcgtacata gattttgaca aatccatgcc gatttttttc atacattctt
    13441 taaaaacttg acgatcttcg ccttttttaa tcgcttcagg gtttgcaccc aaaaacttca
    13501 catcacctaa aagtccgctt tcataaactt ccatagctac atttagagcc acttgtccac
    13561 ccatggttgg caaaatggca tcgattttct cttttttaat aatacttaaa atactttcct
    13621 tggttacagg ctctatataa gtagcatcag caaattcagg atcagtcata atagtcgctg
    13681 ggttagaatt gattaaaact acgcgatacc cttgttcttt taaagttttt gctgcttgag
    13741 ttcctgaata atcaaattca caagcttgac ctataacgat aggaccactt cctataagta
    13801 aaatattttt aatatctgtt cgttttggca tgaattttcc taagagcata aatttgggct
    13861 gattataaca aaaattagtt ttataaactt tgaaattatc gatataattt taaaaaataa
    13921 acactctgct tttaatctag gaaataatac ataaagaaat ttaagatttt ttataaaatt
    13981 ctcattcaat tataaacatt tatttgataa tttaacaaaa tttttagcat taaacaaagt
    14041 tataataatt agcaaaaata tagaaaattt ttaaaaagtc taatccttga cttataaatt
    14101 atctactaca tataaataag caggaatact aatcttaaca taaggcttta cttctacact
    14161 ttgatacata tcttcatcat taactctatt cacaataccg acaggtatat ctgaaaagaa
    14221 aatattatca agtccacttg ttaaaatttc atctccggta ttaatttttg cccattttgg
    14281 aataaattta accacaatcc tgccatcttc accctggatt aaacctggag ctttggattt
    14341 tcctatataa acagaaaaaa cacactgatc atcaccttgt aagagagcca ttgctctacc
    14401 atttttatta atagctatac ctgcagtata tccttgatat attaaaccac gatttttacc
    14461 aactggaatt ttgctccaat ctaaccataa ttttttataa tcattcaatt gaacgtaaga
    14521 aataactcta gttaaagaaa cttgaggtaa atattttgta gaattttgat cctctaaaat
    14581 acgatttaat tgatttgcaa aactagttac ctttacagca atatcttcta attctttatt
    14641 tctagctttt agttgctgaa tttgatttgc ttgattaaag tgttctgaaa ttttttttcc
    14701 caaataatct ttaatattat aaaaattacc tataacaaaa tcattaacac ggagaacatt
    14761 ttgcttgata agtcctccat aataaaaaga tataaaaacc aaaaaggcta agacaagaac
    14821 ataaaaaatc ttattcttca ttggttaatt gttgcaataa tgaaatttcc tctaaagctt
    14881 tacccgttcc ttttgctaca gctaaaagcg gttcatctgc gatataaact ggcaaacgta
    14941 caatttcact taagtattta tcaaaaccac gaatcaatgc tccaccacct gttaaaacta
    15001 caccattttc tactatatca cttgctaaat caggcggcat catttcaaga accattttta
    15061 aagcatcagc aatttctttt aaatactcac gcattgcttc tcttacatct tcacttgtaa
    15121 gttcaatacg acttaaaagt ccacttactt gatcgcgtcc ttttaccacc atagaaagtt
    15181 cttttggaag ttgtattgct gaacctatgg tgattttgat ctcttcgcct gttctttcac
    15241 ctatgataag attgtatttt tcttttacat aattaactat actcatatca agcttatctc
    15301 cagccgtacg aatagacttt gaaatcacaa gtccacccaa agaaatcact ccgatctcag
    15361 tagttccacc ccctatatct actaccaaat ttcctttagg ttcttgtata ggtaaacttg
    15421 caccaatagc tgctgccata ggctcttcga tcaaaaatac ctctcttgca cctgcactta
    15481 aagcactttc tcttaccgct tttctttcta cttgagttaa accataagga acagaaataa
    15541 taattctagg gcgtaaaaaa ctttttctac gatgtgtttt ttctataaaa tagcggatca
    15601 ttttttcagt catatcaaaa tctgcaatca cgccatcttt cataggacga atagcttcga
    15661 tattgcctgg agtttttccc accatatctt tagcttcttt acctacggct aaaatttttg
    15721 ctttggaacc atacctttct ctttcaactg ccacaacaga aggctcgttt atcactatac
    15781 ccttatcttt taccaaaact agcgtattag ctgttcctaa atcaatcccc atatcactag
    15841 aaaaaaatcc tataagttga tctaatatca tttctatcct tttaacttat ttttcttttt
    15901 attaataatg cctttgcatt gtctttaaca acttctttgg ttattacaat atcatagttt
    15961 ttatactctg gtaactcaaa cattaaatct accatcattt cttctataat acttctaagc
    16021 cccctagccc ctgtttttct ctccaatgca agctgtgcga tagctcttag agcatcttct
    16081 tcaaatttta aatttacccc atcaatagca aaaagctttt gatattgctt aataatggca
    16141 tttttaggct cagttaaaat tcttaccata tcttcttcat taagctcatt taaagatgca
    16201 atcacatgca aacgacctat aagctcagga atcaaaccaa aatgcaccaa atcatcaggt
    16261 tcaattttct caagtaaagc tttattttct tcttttgcat catcaaaaaa gcccacaact
    16321 ttatcgccaa gttttctttt taagatagtt tccaaaccat caaaagctcc accacaaaca
    16381 aataaaatat ttgaagtgtc aatttgtata aactcttgat ttggatgttt tcttccccct
    16441 tttggtggaa tatttaccaa acttccttcg ataatcttaa gtaaagcttg ttgcacaccc
    16501 tctccactta catcacgagt aatagaacga ttttcactca ttctagcaat tttatcaatc
    16561 tcatcaataa aaactatacc tttttgagct ctttgcacat ctccatctgc agcttgtaaa
    16621 agacgtgtta aaatattttc cacatcctca cctacatatc ctgcttcagt taaagaagtt
    16681 gcatcacaaa ttgctatagg tacatctaaa aatttagcta aagtttgcgc caataaagtt
    16741 tttccacttc ctgttggccc aacaagtaaa atatttgact taaaaagctc tgtatcatca
    16801 tcttgaagtt cagctttaaa aagtctttta taatgattgt atactccaac actaaaaact
    16861 tttttagctc tatcttgtcc tatgacataa cgatctaaat aagcttttaa ttcttttgga
    16921 gtgatatctt taaattctgt attatgactt tgtttaggtt ctttaaattc tttttcttct
    16981 ccataaataa tactataagc accttcaacg caatattcac aaataaaagc atcatcattt
    17041 tcatttgcta aaattcttct ttgtggattc tccacttcat tgcaaaaact acattttcta
    17101 ggcattattt ttacccctat agacaggaat tccacgcttt gtttctaata taaaatggca
    17161 cattttttta acattttcac tttcttgatt ttcaagcaaa tttttagcat tttcttttaa
    17221 atctccttgt ctaaataaag ttttaaaagc tctactaagt ctatctactt catctttatc
    17281 aaaacgacga cgagtgccta ctaaatttaa acttctaata cttgcacgat ttccttctgc
    17341 taaacaaaac ggtactatat cctgagaaag tgcacttgct cctgctatca tacaaccctc
    17401 acctactttg acaaattgat gaataggtgt aagcccgcct acaaccgtaa aatctccaag
    17461 ctctacatgt cctgccaaag ttgcattatt agctaaaata atattattac ccaaaagaca
    17521 atcatgagca atatgacaat aagccataat aaaagcatta tcgcctatac gagtaaaacc
    17581 atctccttta gctgtacctg aatttatcgt tgcaaattct ctaatagttg catttttccc
    17641 tataacaaca ccgctttttt gctcttcttt ataagatatg tcctgaggaa tatcgcctac
    17701 tattgcataa gaaaatacac gagaatgatc acctatagtt gtatctgaaa gaattcgagc
    17761 accttgtttg atgacaacat tattacctat tttagcatct ttgcttacat aagcataagc
    17821 ttctattaca acatcgtcac caagttgtgc accctcttca atcaccgcac ttggatgaat
    17881 ttttttcatt atttatccac tatcatagct ttaagctcgg cctctgcaac taaatttcca
    17941 tctacaaaag cttgcccttt aaaaatccac atattaccac gatttttaac cacgctcatt
    18001 tcataatcaa gcctatctcc aggacgcaca ggatttctaa attttgctcc atctatgcct
    18061 gtgaaataaa ctactttact ttttggatcc actttatctt ccatactttc aaaagctaaa
    18121 actccacctg tttgagccat accttctaaa atcaaaactc caggataaat aggatgccct
    18181 ggaaaatgtc ccataaaaac atgatcactt atactgatgt ttttatatcc tcgtaccact
    18241 tctttaactt ttaattctgt aattttatct actagtaaaa aaggataacg gtgtggtaaa
    18301 atttcttgaa tttgcattac atctatcatt attaaattaa
//
LOCUS       DAPIWU010000021        18309 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.021, whole genome shotgun sequence.
ACCESSION   DAPIWU010000021 DAPIWU010000000
VERSION     DAPIWU010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18309
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.021"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(108..968)
                     /gene="dcuC"
                     /locus_tag="RJ285_000589"
                     /pseudo
     CDS             complement(108..968)
                     /gene="dcuC"
                     /locus_tag="RJ285_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            1424..4378
                     /gene="cas9"
                     /locus_tag="RJ285_000590"
     CDS             1424..4378
                     /gene="cas9"
                     /locus_tag="RJ285_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HDV7383389.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            4375..5265
                     /gene="cas1"
                     /locus_tag="RJ285_000591"
     CDS             4375..5265
                     /gene="cas1"
                     /locus_tag="RJ285_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HDV7383390.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            5258..5689
                     /gene="cas2"
                     /locus_tag="RJ285_000592"
     CDS             5258..5689
                     /gene="cas2"
                     /locus_tag="RJ285_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDV7383391.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
     repeat_region   5834..6265
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=5834..5869
                     /rpt_unit_seq="attttaccataaagaaatttaaaaagggactaaaac"
     gene            complement(6385..7575)
                     /locus_tag="RJ285_000593"
     CDS             complement(6385..7575)
                     /locus_tag="RJ285_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDV7383392.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
     gene            complement(7579..8025)
                     /locus_tag="RJ285_000594"
     CDS             complement(7579..8025)
                     /locus_tag="RJ285_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HDV7383393.1"
                     /translation="MEHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            complement(8026..8247)
                     /locus_tag="RJ285_000595"
     CDS             complement(8026..8247)
                     /locus_tag="RJ285_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HDV7383394.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            complement(8249..9790)
                     /gene="cueO"
                     /locus_tag="RJ285_000596"
     CDS             complement(8249..9790)
                     /gene="cueO"
                     /locus_tag="RJ285_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HDV7383395.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTMHWHGIPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKNGNFKLESAYYDRDK
                     MMVKEEPNTLFLANINLKKENIELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            9914..11062
                     /gene="nspC"
                     /locus_tag="RJ285_000597"
     CDS             9914..11062
                     /gene="nspC"
                     /locus_tag="RJ285_000597"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HDV7383396.1"
                     /translation="MFYENIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLDRKNELQMIREFSYKDYSLRN"
     gene            11366..12079
                     /locus_tag="RJ285_000598"
     CDS             11366..12079
                     /locus_tag="RJ285_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HDV7383397.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            12054..12245
                     /locus_tag="RJ285_000599"
     CDS             12054..12245
                     /locus_tag="RJ285_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HDV7383398.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWEKYYIKAE"
     gene            12245..12787
                     /locus_tag="RJ285_000600"
     CDS             12245..12787
                     /locus_tag="RJ285_000600"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HDV7383399.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARI"
     gene            12836..15049
                     /locus_tag="RJ285_000601"
     CDS             12836..15049
                     /locus_tag="RJ285_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HDV7383400.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQE
                     KAKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            15046..15687
                     /locus_tag="RJ285_000602"
     CDS             15046..15687
                     /locus_tag="RJ285_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7383401.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            15684..16616
                     /locus_tag="RJ285_000603"
     CDS             15684..16616
                     /locus_tag="RJ285_000603"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDV7383402.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            16783..17565
                     /gene="fdhD"
                     /locus_tag="RJ285_000604"
     CDS             16783..17565
                     /gene="fdhD"
                     /locus_tag="RJ285_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDV7383403.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            17558..18295
                     /locus_tag="RJ285_000605"
     CDS             17558..18295
                     /locus_tag="RJ285_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HDV7383404.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         6559 a         2491 c         3267 g         5992 t
ORIGIN      
        1 atagagggtt tgattttttc acaaaagatt tggatagaac ttgcaaaaaa ctttcttcaa
       61 tatttatact tttaaatttt gatgcaaatc ctattcaata tagcattggc aaaataaact
      121 aaaaagctta aaatagctat actcaaaaga attccaaacc atgcaaaatt tcctgttcca
      181 agatttgaaa ccgcgttagc aaggatatta actccaccaa gtgctttaat gccttcagca
      241 aatactccag cggcgatgat tatgcttacg actgagataa aaatttcagc catagctttt
      301 aaaatcacca tcatatcttc gcctaatttt ctagcatttc tgtgtcttgc aaattcaaca
      361 agaaaaacta aagaaatgct tacaaaattt gctgttacaa catcgagctt gatagtaaaa
      421 aaatacgcta taaataaaaa tacaacaggt aaccaaggaa agagtatgta aaaaagtagg
      481 gcatttagga tcaatgattt gcggaatttc aacttcatca tttaaaacac ctttttcttt
      541 atctctttta tcaatccaag tagaataaaa aggaatcaag atggcaatta actacaacat
      601 aagtaatcac actataaatt tgataattta aagaaagtcc tacgacatta tcactttgtc
      661 ctaccatatc cgccatattg attgaatttc catcttttgg accataatca agcgcaatta
      721 aagaaagcac acatacagct gtaataggac ggattttaag tgagattaaa acaggataaa
      781 tacatgctaa caaaagcaat ccagcatagc tagaaatgac gatttttaaa gccattccaa
      841 caacaaaagt tccacttaaa attaagtatt tattttttga tttttcctga gggtttattt
      901 gctaaaaaag caagttttgc cgaagcattg atatgtttca tgtaagcagt aaagcctgcc
      961 acactcatga taataaaccc tactccagaa agctgacttt taaaaatcgc tgtgataaaa
     1021 gataactatc aagtaaaaca tttaaaaagc ttgtatgctc tctgcttggg gcttttggta
     1081 taggtgttcc tgtgatgtaa aaagcaaaaa taagcaagat aatatttgaa agaaaaatac
     1141 aaaaatgaga ttatatttta gtatataata agcaacgaca attaccgcta aaagtgtaga
     1201 acatatcata aaaattggca tgatttctcc taaagttatt attagctttt attttagcta
     1261 aaatttaact aataaatatt tttcatttaa aattttactt attttttgca ttataaaatt
     1321 aataatatgt atagtttggt tactgaaaag tttatgtttg tttaaaaaaa tgatttttgt
     1381 attataatta tacacaaatc ataaatatta aaaaggatct agtgtggcaa gaattttggc
     1441 atttgatata ggaataagct ctattggctg ggcatttagt gaaaatgatg agttaaaaga
     1501 ttgtggagtt aggattttta caaaggttga aaatcccaaa acaggagaat ccttagcctt
     1561 gccaagacgc cttgcaagaa gtgctagaaa acgccttgct agacgcaaag caaggctaaa
     1621 tcacttaaaa catttaatcg caaatgaatt taagttaaat tacgaagatt atcaaagctt
     1681 tgatgaaagt ttagccaagg cttataaagg atctttaatt agcccttatg agttaagatt
     1741 tagagcttta aacgagcttt taagtaagca agattttgca agagtgattt tacatattgc
     1801 aaaaaggcgt ggctatgatg atattaaaaa tagtgatgat aaagaaaaag gtgcgatttt
     1861 aaaagctatc aagcaaaatg aagaaaaact agcaaattat caaagtgtgg gcgagtatct
     1921 ttataaagag tattttcaaa aattcaaaga aaattccaaa gaatttacaa atgttagaaa
     1981 taaaaaagaa agttatgaac gctgcatagc gcaaagtttt ttaaaagatg aattaaagct
     2041 tatttttaaa aaacaaagag aatttggctt ttctttttca aaaaaatttg aagaagaggt
     2101 gcttagtgta gcattttata aaagggcttt aaaagatttt tctcatttgg tgggaaattg
     2161 tagttttttt accgatgaaa aaagagcgcc aaaaaattcg cccttagctt ttatgtttgt
     2221 agcacttaca agaattatca atcttttaaa caatcttaaa aatactgaag gaattttata
     2281 tacaaaagat gatttaaacg cccttttaaa tgaagtttta aaaaacggca ctctaactta
     2341 taaacaaaca aaaaagcttt tgggcttaag cgatgattat gaatttaaag gagaaaaagg
     2401 aacttatttt attgagttta aaaaatacaa agaatttata aaagccctag gtgagcataa
     2461 tttaagccaa gatgatttaa atgaaatagc aaaagatatt acccttataa aagatgagat
     2521 taaacttaaa aaggctttag caaaatatga tttaaatcaa aatcaaattg atagtttaag
     2581 caaattggaa tttaaagacc atttaaatat aagttttaaa gccttaaaac ttatcactcc
     2641 tttaatgctt gaaggtaaaa aatacgatga agcttgcaat gagcttaatt taaaagtagc
     2701 aatcaatgaa gataaaaaag actttttacc cgcatttaat gaaacttatt acaaagatga
     2761 agtaactaat cctgtggttt taagggcgat taaagaatat agaaaggtct taaatgcctt
     2821 acttaaaaaa tacggtaaag tgcataaaat aaacattgaa ttagcaagag aagtaggtaa
     2881 aaatcacagc caaagagcta aaatagaaaa agagcaaaac gaaaactaca aggccaaaaa
     2941 agacgccgaa cttgaatgtg aaaaactagg cttaaaaata aatagcaaaa atattttaaa
     3001 attaagatta tttaaagaac aaaaagaatt ttgtgcttat agtggagaaa agattaaaat
     3061 tagtgatttg caagatgaaa aaatgcttga aattgatcac atttaccctt attctagaag
     3121 ttttgatgat tcttatatga ataaggtttt agtttttacc aagcaaaatc aagaaaaact
     3181 taataaaacc ccctttgaag cctttggcaa tgatagtgca aaatggcaga aaattgaagt
     3241 tttagcaaaa aatttaccta ctaaaaagca aaaaagaatt ttagataaaa attacaaaga
     3301 caaagagcaa aaagacttta aagatagaaa tctaaacgat actcgctaca tcgcaaggct
     3361 tgttttaaac tacactaaag attatttaga ttttttacct ttaagcgatg atgaaaatac
     3421 aaagttaaac gacacacaaa aaggctcaaa agtgcatgta gaagcaaaaa gcggtatgct
     3481 tacatcggct ttaagacaca cttggggctt tagcactaag gatagaaata accatcttca
     3541 tcacgccatc gatgcagtaa ttattgctta tgcaaacaac tctatcgtaa aggctttttc
     3601 agattttaaa aaagagcaag aaagcaacag tgcagaactt tatgcaaaaa aaattagtga
     3661 attagattat aaaaacaaaa ggaagttttt tgagcctttt agtggtttta ggcaaaaggt
     3721 tttagataaa attgatgaaa tttttgtctc aaaacctgag agaaaaaagc caagtggagc
     3781 tttacatgaa gaaacattta gaaaagaaga agaattctat caatcatacg gcggaaaaga
     3841 aggagtttta aaagccctag agcttggtaa aatccgcaaa gtaaatggta aaatagttaa
     3901 aaatggcgat atgtttagag tggatatttt taaacacaaa aagacaaata aattttatgc
     3961 tgtgccaatt tatactatgg attttgcttt aaaagtatta ccaaataaag ctgtagcacg
     4021 aagtaaaaaa ggtgagataa aagactggat tttaatggat gaaaattatg agttttgctt
     4081 ttctttatac aaagatagtt tgattttaat tcaaactaaa gatatgcaag agccagaatt
     4141 tgtttattat aatgctttta caagctctac tgttagtttg attgtttcaa aacacgataa
     4201 taaatttgaa acgctaagca aaaatcaaaa aatattgttt aaaaatgcaa atgaaaaaga
     4261 agtaatcgca aaaagcatag gaattcaaaa tctaaaagta tttgaaaaat acatagtttc
     4321 agcacttggg gaagttacaa aggctgagtt tagacaaaga gaagatttta aaaaatgagt
     4381 tacgatgaag cttttaaaac actgcttatt agctctaatg ccaagctaaa tttagagcta
     4441 aatcatcttg tgattaagca agatgaaaat atagccaaat tgtttttaaa agatataaat
     4501 atcatcgttt tagaaagctt acaaataagc attagttccg cactttttaa tgcctttgca
     4561 aagtataaaa ttatcttatt aacctgcgat gaaactcata gtataaatgg cgtttttact
     4621 ccttttttag ggcattttca aagtgcaaaa atcgcaaaag agcaaatgaa tgtaagtgct
     4681 caaaaaaagg ctattttatg gcaaaaaatc attaaaaata aaatcctaaa tcaagccttt
     4741 atcttaaaaa aacacaataa aatagagcaa agcaatgagc ttataaattt ggctaaaaaa
     4801 gtaagcttaa atgatagtaa aaatattgaa gctgttgcgg cggcgcttta ttttaaaact
     4861 ttgtttggta cttctttttc aagagatgag ctttgctttg aaaattctgc tttaaattat
     4921 ggctatgcaa tcattagggc ttgtattatt agagcagttt gcataagtgg gcttttgcct
     4981 tggcttggca taaagcacga taatatttat aattcttttg cgctttgtga tgatttgata
     5041 gaagtgttta gggctagtgt tgatgattgt gttttaaagc ttaagggtga aagtgagttt
     5101 ttaagcaaag atgacaaaag agcgttgatt ggcaatttac aaagtaaaat caattttgat
     5161 gggcaaaatt atcctttaaa cagagcgata aatcattatg tggcaaattt taaaaatgct
     5221 ttattgtatg aagatgaact aaagatagtg aaatttgatg attgaagata aatttatgcg
     5281 tgtgcttttg atgtttgatg tgccaactaa aagtaaaaaa gagcaaaaac tagcaagtaa
     5341 atttagaaat aatcttataa aattaggtta ttttatgctg caatttagtg tttatatgcg
     5401 tatttgcaag ggtttaagtt ctgcaaaaag ttctattgaa aatgtaaaaa agattttgcc
     5461 accttatgga aatgtaaggg ctttaatcat cactgaaaag caatttgata aaatggagct
     5521 tttgcttggt ggcatagttt ttaacgaaaa agttaataac gaaaccaatt taacgctttt
     5581 tgatatagat agtcatggag aatttaaata taaaaattca aataatgaag aaattcaaat
     5641 aaacaaaaaa caagaaaaat atcatcagca aaatttattt gaattttaaa agcggtttta
     5701 ggggattgta accccgcaga gtcccgcaaa ctctttattt tagtcccttt ttaaatttct
     5761 tatgagatta tagcataatt tttgctattt ttcatgaaaa aaccccgaaa ttttcattat
     5821 ctggtaaata tctattttac cataaagaaa tttaaaaagg gactaaaaca tttgctataa
     5881 actcatttat ttcagtgcaa ttttaccata aagaaattta aaaagggact aaaacaattt
     5941 taactaactc atcaaaagga cgataatttt accataaaga aatttaaaaa gggactaaaa
     6001 catcttcttt attttcaact atatcctcat cattttacca taaagaaatt taaaaaggga
     6061 ctaaaactac gcatttaaaa taaccccttg taatataatt ttaccataaa gaaatttaaa
     6121 aagggactaa aacgcgtcat ctaagcctaa ttgactagca attattttac cataaagaaa
     6181 tttaaaaagg gactaaaaca aatactagag caccattatc atttttaaga ttttaccata
     6241 aagaaattta aaaagggact aaaataaacc ctagtggatt gaaactccac tagggctaat
     6301 tactccacta aaaggaggtt gcgaatttga aacttattga aatttagggt tgattaaaat
     6361 cgaaataaaa ttatttaaat aattttaagg cataaagata atatctacta aactttcatt
     6421 ttctaacatt tcacattctt ttggcaccac cataagggca gctttattgt taagattgtt
     6481 tataatcgca ctagagcctt cttttttgcc ttcaagattg gctaaaatgc gtccattttt
     6541 aaactctata ttgcaagcga caaattccaa ataaggtgtt tttttcttgt aacttccttg
     6601 taaaaaggct ttgcaaatat agtctttagg ttgaagtaac caagagttta aaatctctct
     6661 tgtgtaaaga ttaaacatta ccatagccga gtaaggaaaa cctggtaagg cgatgatgaa
     6721 tttttcatta gccttagcta ttttgatatg tctacctggt tttatgtcgg ctttatcgat
     6781 gatgatttcg tattctttga tggctttttt taaaaagtca aaatctccca tagaaacccc
     6841 gcccgttgta accaaaatat cacaactttg caaagcactt tcaagggtgg aaaaagtggc
     6901 tttctcatca tcttttaaaa gaggaaaaac ccttgtatcg caatttaaat ttttagctaa
     6961 attagctatg gcgatatgat ttgaagagcg gatttgagca ggattttcca aggcttctcc
     7021 tagatctttg atctcacttc cactacttaa aacccctaca ataggtttta taaacacact
     7081 aatgtgaaaa aatccaagtt cagctaaaag agctatctcg ctataattta accttgtgcc
     7141 ttttttgagt aaaatttcat cttttttata gttttctcct accgcacgca cggcaaaagc
     7201 ttggggaact tttttttcta taaaaagagt attattttct atgcgtatat tttcaacagg
     7261 gactaaagta tcgcttcctt cgctcatgag tgagcctgta aaggttttta cacaagtgcc
     7321 attttgtacg ctaaattgtg gcatagtacc cgcaggtgtg aggcctaaaa tttttaaagg
     7381 cttgtcttga tcttcaaatt tgatcgcata accatccata gccgaggttg gaaattcagg
     7441 ctgattttta ggggctttta tatcttgagc taaaatgcgt cctaaacact ctgtaagagc
     7501 tattttttca atcttttcat aggttttgat atgagagtgt aaaattttta aactttcttc
     7561 ataagacatt aacatttttt atccttttaa aagtcctgca ccgcaaagtt tggttgatct
     7621 ttctttggca taaattcttt ctttgtttat cacatcatac ttccaaatag gtgcacttgc
     7681 tttaaaatct tcaacaaatt cattaagaag tttaagtcct aattttcttt gtttgcttaa
     7741 aattcctgca aaataagagc tttcatgaac cgccacatcg cctatagagt gagcaaaaag
     7801 caagctaata ccatcaaaat ctactctttt ttgccactca tcaaaccatt tttttaaaag
     7861 cggctcataa atatcaaaac taagtgcctc aatgcctcct tcttcacgca caataccaca
     7921 aaaagtcagc aaagcaccgc agtttttatc cttggcaaat tcataccatt ggctataaat
     7981 tttaggaata tctaaagaac cttgatagag tgtaaaatgt tccatttaac ccccacaaac
     8041 tggcggtaaa agtgctattt tatcaccatc ttttaactta gtgttttcat caaaaatgat
     8101 ttcatcgttt aaagatacgg cacaaagttc tagccattct tttaaactct catctttttg
     8161 caaaatttct tttaattctt ttaaattttt tacctcaagc tctaaatttt ctttatttat
     8221 ggggcctaaa aattccactt ttaccatttt attcctttac ttctaaattt cccatcattc
     8281 ctaaatcttc atgttctaaa atatggcaat gatacattct aagtccttta aaatcttgtt
     8341 tcattctaag tcttaactct tcattaggac gcacatttat agtatctctt aaggctctaa
     8401 attcggcttt ttgaactttg ccattgagtt ttgatgagat gagttcaaat tgcgtgccgt
     8461 gtatgtggaa aggatgatcc atgtgagatt tatttatcac tatccagtct tcaactactc
     8521 caagtttgga gcttaaatca atgcgtttta aatcatagct tttgccattg attaaaaaca
     8581 tagacgcaag agcgattttt aattcgcttt cactttttcc catcatacca tgcatttgca
     8641 tatgatcttc actcatgatt atttctttaa attccttagg ttcttctgaa ggtttgaaaa
     8701 tttttaaatt ttttggaagt tctatatttt ctttttttag gttaatattg gctagaaata
     8761 gggtattagg ttcttctttt accatcattt tatccctatc ataataagca ctttctagct
     8821 taaaattccc attttttgga gcgtcgatta aaacttctac gcgagaagca ggacttaaga
     8881 aaagttcttc tttataaata gctttttcta taagtccacc atcagtacca acaagtataa
     8941 acttagctcc ttgtatgcgt aaatttaaat atcttgccgc agtagcatta taaatgcgta
     9001 tgcgttcgtt tgtggcgagt ttgattttag gtttaaattg tccattaatg agtacaaatt
     9061 ctccttctct accatttagc caatcattta ggttgttgtt tggaatttga gcgttttcat
     9121 caagacgcaa atcgctaatc atcaaatctt tttcttttaa atgacttaaa gcatcttttt
     9181 ttgctttgat cacaaaagcc cctgctaaac ccataaaaac ttgtttagaa gtggtataat
     9241 gagggtgtgg atgataccag taagttcctg cgctatcttg aggaatttca aaacgatata
     9301 ttctttcttc tcctgctaag ataggatcat gtgggcttcc atcttgatca ggtggcacag
     9361 gaatgccatg ccaatgcata gttgtagctt ccttgagttt gtttttgact aaaatttcaa
     9421 gtttatctcc ttcaaaaact tctatttttg gagcaggcac gaggccattg taagtataaa
     9481 ataaggtttt tttacctttg ataagctcta tatgattttc tttgatttct agggtagcac
     9541 gaaaaatatt tttttcttta ctttcatttt tgagcaaagg caaggctttt aaaatttctc
     9601 cttgggggaa ttgttttgga tctaaaagct ttaaattttt tggagcaaag ttgataaaag
     9661 aagtatctaa gtcatgattt atagaatgat ttttatgcat ggagtgcata tcgtgcatag
     9721 gatttgcata ggctacaccc atacttgcta gagtaagtgc attaaatttt aaaaaatttc
     9781 ttctattcat tagtttttcc ttttacttga ttttttgtat tatagtcatt atttttttag
     9841 ttttagtaaa tatttatttt gaaaatttgg tttaattttg ttatgatttt agcaatttaa
     9901 tcaaggaaaa ataatgtttt atgaaaatat tcaaacccca gcttatattt tagaagaaga
     9961 taaattaaga aaaaattgcg agcttttagc aagtgttggc gaaaaaagtg gtgctaaagt
    10021 gcttttagct ttaaaaggtt ttgctttttc aggagcgatg aaaattgtcg gagaatatct
    10081 aaaaggttgt acttgtagcg gactttggga agcaaaattt gctaaagaat acatggataa
    10141 agaaattcat acttattctc ctgcttttaa agaagatgaa ataggtgaaa tagccagttt
    10201 atctcatcat atagtgttta actctttagc tcaatttcat aaatttcaaa gcaaaacaca
    10261 aaaaaattcc ttaggccttc gttgtaatgt tgaattttct ctagccccaa aagaacttta
    10321 caatccttgt ggaagatact caagacttgg aattcgtgct aaagattttg aaaatgtgga
    10381 tttaaatgct atagaaggac ttcattttca cgcactttgt gaagaaagtg ctgatgcttt
    10441 agaagcagtt ttaaaggctt ttgaagagaa atttggcaaa tggatagggc aaatgaaatg
    10501 ggtgaatttt ggaggaggac atcacatcac taaaaaaggc tatgatgttg aaaaacttat
    10561 tgctttgtgt aaaaatttca gtgataaata tggcgtgcaa gtttatcttg aaccaggcga
    10621 agcggtgggt tggcaaacag gaaatttggt ggctagtgta gtagatatca tagaaaatga
    10681 aaaacaaatt gctattttag atacttcaag cgaagcacat atgccagata ctatcatcat
    10741 gccttataca agtgaagttt taaatgctag aattttggcc acaagagaaa atgaaaaaat
    10801 ttcagactta aaagaaagcg aattttccta tttgcttact ggaaatactt gtttagcagg
    10861 tgatgtaatg ggagaatacg cctttgataa aaagcttaaa atcggcgata aaattgtttt
    10921 tttagatcaa attcattaca ccattgtgaa aaacacaact tttaatggta taagacttcc
    10981 aaatctcatg cttttagacc gtaaaaatga acttcaaatg ataagagaat tttcttataa
    11041 ggattattct ttaagaaatt agtattattt ataatttgca taaaatgtta attttactcg
    11101 gaagagaatt aaagatgtaa attttatgca aagtatttta ttttttcaaa tataaaatca
    11161 actcaaatat ctaattttaa atactttagt atgatttttt aatattttaa atccttgtgg
    11221 aattttattg aaattcagtg atttttaaat caaatagtat taagataaat cgatttaaaa
    11281 atcggcttta aaatgaatat taggtatatt ttgcataata ttcattcaag caaaatttaa
    11341 agctattttt gaaaattttg aatgcatggg agctttaatg gatttggaaa aattaagatt
    11401 agctagaagt ctttattatc aatgtctagg agagcttttt gttttttcat tttctgaaga
    11461 aagattgtca aaattacaag agtatttaaa gacaatgcaa gaatgtttat ttgatgaaaa
    11521 tttaaaatca aattttgata tcttgcttaa gcatttagat gatgaaaatt ctatacaagc
    11581 attttttaaa gaatatgatt tgcttttttt aagtcttaaa aatagcattc caacgacttt
    11641 ttcttacata gaagaaggtt ttgaaaattc aaatccttta ctttgcgtgc gtcaaatttt
    11701 agtcaaaagt aaaataagac gcaatgaaaa attttttaaa gaaagtgaag atagtgttgg
    11761 attttgttta ttgttgatga gtgaattttt aaggcaaaat gaagatgatt tagccaaaga
    11821 gctttttgaa aaagtgatca ataaaagcat tgatgagttt ttaggcgatg ttttcatgaa
    11881 taaaaatgcg aatttatata aggaaattgc aagtattgca tcggctttta tggaatttga
    11941 aagactttgc tttgaagtgg aaaaacctgc aaaaataaat tctaaaaaag tgcaaaacga
    12001 tctatcgcgt tcagaatttt taagaagaga agcaaataaa caaaggagga ctcgtgaaaa
    12061 atcgcaggga atttcttaaa aaatccgctt ttgccttagg ggctgctgga gtgcttggta
    12121 gcacgacttt agctctagct aaagatgaag aaagaaaaga tttggttaaa ggtaaaagta
    12181 agaaaaaaga agtgcttttt caaagaagtg ctaattggga aaaatattat ataaaggctg
    12241 agtaatgtca agtgtaggtg aaaatatcaa gcttacgcgt cgttcttttc ttaaaatggc
    12301 agcactttca agcctagcaa caccgttgct tgctagaagt gaaactttaa gagaagcgag
    12361 tgctgatgag cttaaagaag cgtatgaagg tagtaaaaaa gtaaaaacag tttgtacagc
    12421 ctgttctgta ggctgtggga ttattgcaga agtgcaaaat ggtgtttggg tgcgtcaaga
    12481 aattgctcaa gatcatcctg tgagttcagg tggacattgc tgcaagggat ctgatatgat
    12541 cgatatggtg cgttcacatg tgcgtttaaa atatcccatg aaaaaagaaa atggagaatg
    12601 gaaacgcata agttatgagc aagctttaag tgagatcgga gaaaaactag ctgcttatcg
    12661 taaagaaaat cctgaaagtg ttatgttttt aggttctgca aaacttaata atgaacaagc
    12721 ttattatata agaaaatttg cagcattttt tggaacgaac aatgtagatc atcaagctag
    12781 aatttgacac agcgcaacag tcgccggtgt ggcgaataca tttggttatg gcgctatgac
    12841 aaaccatctt ggagacattc aaagaagtaa atgtatcatt atcattggag caaatccagc
    12901 ggtaaatcac cctgtgggtt ttagacattt cttaaaagca aaagaaaaag gtgcaaagct
    12961 tattgttgta gatcctagat ttacaaaaag tgcagcaaaa gcggatattt atgcaagaat
    13021 tcgtccagga actgacattg ctttcatgta tggaatgtta aaaatcattt ttgatgaagg
    13081 cttggaagat acaaaatatc ttgatgaaag agtttttgga attgataaaa ttcgtgaaga
    13141 agcagcaaaa tggacagctg aagaagtgga aaatgttaca gggatctcta aagaactttt
    13201 ggtgcaaatc actcacgaag tagctaaaaa caaaccaact acgcttattt gggctatggg
    13261 tttaactcaa catactgtag gaacttcaaa tacacgttta gcacctattg tgcaaatggt
    13321 acttggaaat ataggtaaat ttggtggtgg agttaatatc ttacgcggac acgataatgt
    13381 tcaaggtgct tcagatatgg cttgtttgag cgaaaattta ccaggttatt atcctttaaa
    13441 tgaagcgact tggagatact atgccaaaat ttggggtgtg gattatgagt ggcttttagg
    13501 aaattttgta agcaaagatt ggatgcataa aactgggctt tcacttgcta gatggtgggc
    13561 agcggcttta aatggaaaag atggaaatga tgctatcgat aatgcaggaa cgcctttaaa
    13621 agctttagta gttatgggaa atggtattac ttcgactgca caacaagtaa aagttaaaga
    13681 aggtttggaa gctttagagc ttttagtttt agccgatcct tttgtaaatg aagcagggat
    13741 tattgcagaa agaaaagatg gaatttatct tttacctgca gcaacacagt ttgaaacaag
    13801 cggaagtgta acagcaacaa atcgtagcgg acaatggaga tttaaagttg tagatccact
    13861 ttatgaaagc atggaagatc aagaaatttt atttgagctt gctaaaaaat taggttttta
    13921 tgaagacttt accaagactt tacgcgatga aaaaggtgag attgtttggc ctgaaaatgc
    13981 aacaagagaa attgcaaaag cagttagaag tatagggctt aatggttgga gtcctgaaag
    14041 gcttaaaaag catactttat actgggataa atttgatgag gtaactttag aaggaaaaga
    14101 cgaagttgct ggcgagtatt acgggcttcc ttggccttgt tggagtgata agcacccagg
    14161 ttctcctgtg ctttataata ccgacattga agtagcaaaa ggtggtatgg gctttagaaa
    14221 caattttgga cttgaatatg aaggagagag tttacttgct aaaaatgcac ctttaaattc
    14281 gcctattgat acaggttatc cacaaattac taaagataat atagaaaaag ttttaggcat
    14341 tactttaagt gcccaagaaa aagctaaaat gggatcaact tggtcttatg atgatagtaa
    14401 tatcatagca actaaatgta tagaaaaagg catagttcct tatggaaacg ctaaagctag
    14461 agctgtagtt tggactttta aagataaaat tccactccac cgtgagcctt tacattctcc
    14521 aagaaacgat ttggtgcaaa aatatccaag ttttgaagat caaaaagcgc tttaccgcgt
    14581 ggatactaaa tttgtttctg tgcaacaagc taaggattat tctaaagaat tcccgcttaa
    14641 tcttgttact gcaagacttg tgaatttaaa tggtgcaggt atggaaaata gagcatctat
    14701 gtatctaacg cgtttaacac ctgaaatgtt ttgtgagatc aatcctgaat tagcaaaaga
    14761 gcaagacatt aaagcaggag atatgatttg ggtgcattct ccagaaggta ctaaaattca
    14821 tgtaagagtg aaggttaatc caggtgtagc aaaagatatg attttcttgc ctttccattt
    14881 tacaggagtt atgcaaggcg tggatttaac gcacaatttc ccagaaggaa ctaagcctta
    14941 tgcaagcgga gaaagtgcta atacggtaac aaattatggt tatgatatca tgtgtcagat
    15001 tccagagact aaaggtggac tttgtagaat cagtaaggat ggaaaatgag taaggtaaat
    15061 tttgcaaatt tagaaaaaga acgcttgaaa ttcttttgtg ataatgagcg ttgtattgat
    15121 tgtaatggtt gcgcggtagc ttgtgatgaa gcacatgagc ttcctattca tattcgccgc
    15181 cgccgtgtga ttactttaaa tgaaggaatt caaggaaaag aagtttcaac ttctatttct
    15241 tgtatgcatt gtgatgatgc tccttgttct atcgtttgtc ctgtggattg tttttacatc
    15301 cgtgctgatg gtattgtttt acacgataaa gaaatttgca taggttgtgg atattgtctt
    15361 tatgcttgtc cttttggtgc accacaattt ccaaaagata gtgtttttgg aaataaaggc
    15421 attatggata aatgtactat gtgtgcaggt ggccctgaag caacgaattc agaaaaagaa
    15481 agagaacttt atggtcaaaa tcgtatcgca gaaggaaaag tccctgtatg tgctgcgatg
    15541 tgttcaacaa aagcactttt agtaggtgaa agttctaaaa tagaagagat ttatcataat
    15601 agacttatga atagaaatta tggcattcca aatccttcgg aaagtttgga atggaagatt
    15661 gcttacacag gaaaggaacg cttatgagaa aagtatttgt aacgctttta ttaagcgtag
    15721 tgagtttatt tgcttatggt agcgagagaa tgggacaaga tactcaaatt tgggattttc
    15781 atcgtattac aaatatccca aattatgata cttttggcaa actttggaca actttgcaag
    15841 gtgaatatat agctactata gctttaatcg ctgttattgc ggtattatct gcatttgctt
    15901 tgcattatat ggttatagga cctaagcaat tttcacacga tggaaagaaa atttatgctt
    15961 ttacattatt tgaaagactt tttcatttta tcgcggcaat ttcttgggtg attttagtgc
    16021 caactggttt tgtgatgatg tttggggcga cttttggagg cggacttttt gtaagggttt
    16081 gtaaaaattt acatgctttt gcaacggttt tatttatcat ctctataatc cctatgtttt
    16141 tatggtggat taaaagaatg cttcctgcaa gttatgatat cagatggatg atgatagtag
    16201 gtggttattt aagcaaagta aaacgtcctg tacctgcagg taagtttaat tttggtcaaa
    16261 aatcttggta ttatatagct gtatttggtg gatttttgat gataattaca ggtggattta
    16321 tgtattttct tgattttaat tccacggcaa ttcaaggtct ttttggttta actcaaattg
    16381 aacttttaag aatttcagct atagtgcata atttcttggg tatagtgtgt gcagtgtttt
    16441 ttggtgtgca tatttatatg gcagtatttg caatcaaagg cagtatccat tctatgatta
    16501 gtggttataa agaagaagaa gaggtttata ttttacattc ttattggtat aaagaattaa
    16561 gcaataaaaa gcaaattgaa cctagttttt cttatgatcc taatgtaaaa atttaatctt
    16621 taaccgctat gttattgcat agcggtagtt ttaagctttt ttgaaataaa tagaacgaat
    16681 tttcttttat aagttgaatc taaaatctat ttttccatat ataaatttgt tatttatgtt
    16741 tttttgatat aatattattt aaagatattt aaaggataag gtatggatcc gttatttaca
    16801 actcaaattt taaaatataa aggtgatgaa tcttttacat gcaatgatac tttagtgcgt
    16861 gaaattaagc ttgaaatttt tattaatgat gaaaaagtag gtgctttaat ggcaactcct
    16921 gtagatgaac aggcattagc aataggatat ttaatgagtg aaaatatcat tgcgaaagta
    16981 agcgatattg agagcataga aacaaaagat gatggtatga gtgtgcatat taaagcaaag
    17041 attgataaag aaaatttagc aaagcttaat gctgaaggtg tagttataag tggttgcggt
    17101 agagcacata ctgccaatat cgatccagaa gctattgaag cgagtaaaat tagttctgat
    17161 gcaaaattta gcaaagatga aattttaaaa caaatgagta ctttttatac tcaatgcgag
    17221 ctttacgaga aaacaggctg tgtgcatacg gctaagcttt ttgtagatga gaaaactttt
    17281 tttataggtg aagatatagc tcaacataat accatagata aagctttagg aaaagcacgt
    17341 ttagctgggg ttgatttaag tcaatgtttt ttaatggtta gtggaaggct aagttctgaa
    17401 atggtagcta aagcagttat gcataaaatt ccagtgcttg tttcacgcac ggctcctact
    17461 tgtttagggg ttatgatagc aagaaaattt gatttaacgc tttgtggttt tgctagagaa
    17521 aataagatca atatttatag tggagaattt agaattcatg gataaaaatc aagaaaaaga
    17581 aatcatctca tacatgagag aattgttaaa tagcaatgaa aaattagatt gtggtacggc
    17641 ttttaaaatt gcaaagaaat ttaatataaa tatagaaaaa atcggacaat tagccgatga
    17701 aaatcacatg agaattgata attgcgagtt ggggcaattt ggacatttag attttgaaaa
    17761 agcaaagatt gaagtgctta aaaaaataga acctagttta gatgaaaagc gtagaatttt
    17821 ttgtaaagat gcaagagata ttgctaaaga aggttgtgga cttaaaagta tgcgttcagc
    17881 tttaaaaact tataaggttg atgtaaagta ttgtcaactt ggttgtttta aagaaaaaaa
    17941 aggtaagcaa tttatagtaa gaacaaaaac ttggattgaa aatgcggatg gagatttgct
    18001 ttttggtcga ggaaaaacag aacttttaga acttatcgga caaacaggta gtttattaca
    18061 tgcttctaaa cttatgggga ttaattataa aaaagcttgg atgcatttac aaaccttaca
    18121 aaaaaattct caagaaattt tagttagcac aagacaagga cgctctaaag aatcaggaac
    18181 aaaacttact cctagagcta tggaattgat ggaaaattac tctattttgc aaaaagacat
    18241 agaagaatac gctaataaac gctttaaaga attgttttta aaaggaaaaa aataaatctt
    18301 ctatcaaaa
//
LOCUS       DAPIWU010000022        18309 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.022, whole genome shotgun sequence.
ACCESSION   DAPIWU010000022 DAPIWU010000000
VERSION     DAPIWU010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18309
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.022"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            48..311
                     /locus_tag="RJ285_000606"
     CDS             48..311
                     /locus_tag="RJ285_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HDV7383405.1"
                     /translation="MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLL
                     TIALMWGASKIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT"
     gene            324..3092
                     /locus_tag="RJ285_000607"
     CDS             324..3092
                     /locus_tag="RJ285_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB4 family type IV secretion/conjugal transfer
                     ATPase"
                     /protein_id="HDV7383406.1"
                     /translation="MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLV
                     GFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSN
                     FPKISVFGLNAEPSFEKLIPFSSLINDSVVITKDYFLMTTWEIGGISFEAEEDDELDI
                     KNDLLNMLFKSFANESVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLR
                     KNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPK
                     RLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIEQYLNGNLQNIQFGHDTIQFN
                     QNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQK
                     KQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTK
                     MNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKN
                     CWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIV
                     DQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNP
                     FMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISL
                     LLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDD
                     KDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFL
                     RLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNP
                     VKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLE
                     LKEIYKNS"
     gene            3103..3669
                     /locus_tag="RJ285_000608"
     CDS             3103..3669
                     /locus_tag="RJ285_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDV7383407.1"
                     /translation="MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKRHFHVLRDIE
                     NILNDLREIGTSQDLSNFGETYRNTEIRGFGKVKGKTRKDRCYNLTRDGFSLLAMGFT
                     GKKALQFKIAFINAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDN
                     PYSKEAKNVFSLNYLVDNRTPKDPKKLQ"
     gene            3666..4331
                     /locus_tag="RJ285_000609"
     CDS             3666..4331
                     /locus_tag="RJ285_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383408.1"
                     /translation="MSDKELQKEILALENDVKQLEATIDVIKQRITHLKDIAWDRQSK
                     KESSQMYKVLKEDKTHTRVKSNVGDIKVDKDFMDKEIKKHLDNPNLRGMVTTQEMLSF
                     PKVAKGVEANNEARGYTWQVKANDGNTLVYGSRKYETNNEKIHRLATSHSKTEKNERQ
                     AEVGGRSHPHHPIFNDFNFRKSAENIISQQNKSTNDFKAKLEEFSTKKTNAIESINKE
                     FKR"
     gene            4365..4790
                     /locus_tag="RJ285_000610"
     CDS             4365..4790
                     /locus_tag="RJ285_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDV7383409.1"
                     /translation="MNNVNLIGYLGKDFEVGTTNSGRVYAKNSLAITKRWKNERGNEE
                     SSTTWIPIVLFGKSAESASTHIKKGSQFACSGELSSNQYQDEDGNTRTMLTVIVSKFY
                     WLGKKDKDDNGTQNPQVPPKEPNIDYENTNIESEETQVF"
     gene            4812..5081
                     /locus_tag="RJ285_000611"
     CDS             4812..5081
                     /locus_tag="RJ285_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383410.1"
                     /translation="MKNLSVEELAQELETSNHEKLIKALFLFEKNSSMEDLNSDQIEI
                     ILDEVYEFYINHKSISSFLQEDINQALDKAIDKELCKKQEKSFER"
     gene            5085..6056
                     /locus_tag="RJ285_000612"
     CDS             5085..6056
                     /locus_tag="RJ285_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HDV7383411.1"
                     /translation="MKKNIFGVNKAIGKSHPHENGARLISLDYNYTKEYNYNYEICVT
                     QFNHLFSEVKFSHRVAALWLTPQNYIQKFKKSILILTSLLVLPNLAFSAGIPVVDVTA
                     NQQMATQNAKQVAEWAKDASRWTETVAHYQKQIQAYKDELLSKTGIRDSVTFLKDIKQ
                     IYSDFAEVGQNIQSFYNDVLRDPQKFLSDKGNEIFGKYTSFDRCNFDFLSQSEKNICK
                     MNLITYAAQVETYNQASKQMDTISQTLQKLQDKLVNSKDIKESTDVGNAIQLEVAKIQ
                     MVKNQVDLANASYENQRKIKEDMAMQEYSKSLQKPRESAMEFFKNNK"
     gene            6053..7051
                     /locus_tag="RJ285_000613"
     CDS             6053..7051
                     /locus_tag="RJ285_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HDV7383412.1"
                     /translation="MNLDLFQTLGKSIQQIVDAIRQVGTNDKVAELSVLLSIIITLVI
                     MYKGYEVLMGRSQSPIRELTWDIVGKLVAITFALNLGGWLDLTISTMDGLYEWAGGGT
                     QMYKTLDEMYANTAQLTNIIWAKSSGVGGAILAIVAMLLCYVGFAIAVVPALTIFVVT
                     TFTQTLLVITAPIVFWLLVFKATKNVFTQWIGLLLSNTLVILLVGLFLGVFMEQISTW
                     IKYFAKVTQAGDEVLGTSIFFVIAALVLVIMIISAKLYAEKVANVSMEGAMGGVIGSV
                     LNPVGRLAGWAGGKVAGKTVNTAKAGGKLAAKGTLASAKGGYSFAKKMYERARNAG"
     gene            7041..7208
                     /locus_tag="RJ285_000614"
     CDS             7041..7208
                     /locus_tag="RJ285_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383413.1"
                     /translation="MQAKLIFILLLGVLFFSACSTKNQGKYDEFFNNQTGWIPVNTQN
                     KDLNKGTMDEK"
     gene            7198..7860
                     /locus_tag="RJ285_000615"
     CDS             7198..7860
                     /locus_tag="RJ285_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HDV7383414.1"
                     /translation="MKNEFNTAIDYEASFRYLIEKSNKRAWLIAFISIFIAIISIIAV
                     VLLTPLKTIEPYVIRVDNTTGMVDILTMLDEKEIKANEALDKYFISTYVKAREGYYYD
                     LLNQDYLLTQLMSSEKVANEYRALYEGDNARDQILKNSNEVSVQILSIVLGESNGVKT
                     ATVRAIITTKNLTSKGTTQATKVITLSYDYILAKASEENRFLNPLGFKVLTYRIDDEV
                     AQ"
     gene            7857..8744
                     /gene="virB9"
                     /locus_tag="RJ285_000616"
     CDS             7857..8744
                     /gene="virB9"
                     /locus_tag="RJ285_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein VirB9"
                     /protein_id="HDV7383415.1"
                     /translation="MKKIILINLLLCSFIWALNIPKTSTFDKRIAYAIYNANDVFQIN
                     AKNGYVSVLEFGTDERIINTATGFAEGWDLIEKDNLLFIKPKAYKTQLVQQENNNIGE
                     SQASQEFVLDPNPHDWKTNLIVITNLNTYVFDLKLVNQNNNATYKLSFSYPKKDLKAA
                     KEFLEAQEQENIRRDLNKNTIPRNWDFYMKINKGSEDISPNFAYDDGVFTYLGFDNTK
                     TFPAVFMYDNGKESILNTHIKKDGNYEVLVIQKITKQILLRSGDKVVGIFNRGYAKNP
                     LDKTRETSNENIQREINKK"
     gene            8771..9946
                     /gene="virB10"
                     /locus_tag="RJ285_000617"
     CDS             8771..9946
                     /gene="virB10"
                     /locus_tag="RJ285_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB10"
                     /protein_id="HDV7383416.1"
                     /translation="MQDKEQDNLDNDFENHTSDLHDQKNHLRKIQAYVIFAVGGLLLV
                     LILVYFLKSFLSSNTTTEEVQKEDNKDLAQSVKTKEFIPPPPQKTFDELIAQESPKPT
                     QDLILEPKPPKPRIVKGAGVTVVASSNNDGFGNNGTGNREEFGEKPNTVFEFGQNGSL
                     QNSNNLQGGSNGDFVGEVFTPTIAKVSEFDQNLLLPKGTYIGCALKTRLVSSIKGGIA
                     CIVSNDVYSANGNTLLIEKGSTITGTFNTGQMDDGMDRLFVIWQEIRTPNNIIIPVYS
                     GATDELGASGVQGWVDHHYLKRFGSAVLLSMIDDSLAILADQIAGKDNKNNYANYTEN
                     TRDSAKEIANTALEKMIDIKPTLYKNQGDLVGVYVNRDIDFSKVYKLTRKKNVNNAR"
     gene            9927..10934
                     /gene="virB11"
                     /locus_tag="RJ285_000618"
     CDS             9927..10934
                     /gene="virB11"
                     /locus_tag="RJ285_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HDV7383417.1"
                     /translation="MSITLDKYTQKFFGEFLKDDNINEICYNGDNKIWVQNSKGLWEC
                     IDTKLDFEQAGHFATASASFKKDKIDVSRPILSCILVGGERMQIVIPPATKSEHISIT
                     IRKPSKTRFKMEDHVKSGLFEDLNPDDKNIIKPSDEELIKLYKERDYQAFISKAVSYG
                     KNIIIAGETGSGKTTFMKTLIDFISLDDRIITIEDVEEIKFYEHKNFVQLFYPSEAKS
                     TDFLNSATLLKSCLRMKPDRILLAELRGAETYDFINVLASGHGGSITSCHAGSPEETF
                     TRLALMTLQNPQGQCVPFEIIQKTLKDLIDIVVHIHAHHGKRRISGIYFKEIENIKLE
                     R"
     gene            10935..12746
                     /locus_tag="RJ285_000619"
     CDS             10935..12746
                     /locus_tag="RJ285_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HDV7383418.1"
                     /translation="MQDNKSIQIIFLAVASFILTYLITPIVFFFLNKVKIMKAIEIYN
                     INFTLQAIANGYPKIWLSLSITFGICFVVFSVLVLSLKAKKSQFGEARFANFNEIKKM
                     NLFGDKGIIIGKYKGKLLRFGGQQFVALGAPTRSGKGVGIVIPNLLEWQESAVVQDIK
                     QECFDYTSKYRKEILKQEVYLFNPFSRQTHRYNPLTYIDMSDKEHCDSQLMDLANILY
                     PLDGDSTSKFFNGLAQNLFIGLCYLWRDLQLTDMGKEFQKSFNVDVGNFNFYNILQLS
                     KGFSLKNEEKTLRGFDDTYNFLVYCEILDEATIRRLETYFNINSDATKSGVMSSFNAP
                     LVPFESETLRLSTETSDFDLRDLRKKKMTIYIGITPDQLANAQFILNIFWSQLILLNT
                     KELPQSNKELKYTCLMVMDEFTAPGRIPIYQSAISFMAGYWLRSLMIYQSNSQLETQP
                     PLGYGKEGAKTLLTNHACQIFYAPREQEDAEAISRILGNTTFKTKSRSINTGNNGGGS
                     HSISEASRALMLPQELREMPFENELITIDSGKPILCNKAFYYSDSYFMDKFKAVSKSL
                     SGIKKIPSRKQLEDAILKGECKIKIQIIGENNEKNVA"
     gene            12727..13158
                     /locus_tag="RJ285_000620"
     CDS             12727..13158
                     /locus_tag="RJ285_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cag pathogenicity island protein"
                     /protein_id="HDV7383419.1"
                     /translation="MKKMSLSLALIASLMVGCSAPKAKRLDDGSALSINNSLLEHKYS
                     FVPKDPYLSGFNWTYHIVVEKKTVDDDFIKNDLVTKTFLLAHNSTKIILVGREDLIKQ
                     YKHYFEKNQVLAPIELQPVSPIERDFNKVNILFFNKTNLGE"
     gene            13161..13919
                     /locus_tag="RJ285_000621"
     CDS             13161..13919
                     /locus_tag="RJ285_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383420.1"
                     /translation="MKKITFATILFFGVVSSSNAIKLDILTGDTKLACEAMLCLASPV
                     KPPECGAALARYFSIDARKWADVIAKRRSFLNLCPVDASSDPEMYKYKNDILVHLDGE
                     CSVSALNNRVEDTLLRTETIQKCSHGDGCTTEIIKHYGYRINPQLTNSCRLLASSKYT
                     DYHLKYTCNTKFYEKKDWERGYELKEVSQEIFNALPISQREQGEKLVPVSYAEFVRLP
                     ADKRKQGGFGKYYRVDIAFYQKIIIKKDCWINEK"
     gene            13922..14719
                     /locus_tag="RJ285_000622"
     CDS             13922..14719
                     /locus_tag="RJ285_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383421.1"
                     /translation="MNEEINSNENSLYELVKEDNSTNMVIQNYNELLSKFENLIKTII
                     AKIDIGKQNSSSNTEDGIFKDLEKNIIELDNTFLALISYFKNPPSDEEKEFINKTASI
                     KKTMEDFAEFANEIQKLSLDDKLKKYNEQINKFCEIVEYKLSHNAENYNSFLDHFVEN
                     GKLKLNIFSEIFTKMTKNTKWYLIFFSFTSIGLGIALGILILLTYIKYSEYNNLKERV
                     STITQGLATISIDENSKGSFTLSFAKNKKTIFNENKNSIQITLQGGE"
     gene            14793..15413
                     /locus_tag="RJ285_000623"
     CDS             14793..15413
                     /locus_tag="RJ285_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383422.1"
                     /translation="MAFGKLVNDKIVIDTNNALNYRSREGDIQQRKVDTALIDIIKEA
                     GQVAAMEHGAVLFSAKVNEVWKNYFVNRDEKTHNIVLKPTNSQNRDDFIYINSNINEQ
                     GYFYYTINQKRESAKELIEGVGIVEHQNQDGTKSHYLETNVRLYNEELKRELKEKGNE
                     FIAVISNAGIKVVNEAEMKAQKQEQQIQQTQEIKEPEKTQNQEFGR"
     gene            15500..16141
                     /locus_tag="RJ285_000624"
     CDS             15500..16141
                     /locus_tag="RJ285_000624"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383423.1"
                     /translation="MKVNYIELEKKEGQIGNIPYIIIKVEYPNLKKLQENDLLMANDK
                     GQWLCGFIGLKENQKVDFKELDNGYIAPQYLYLNSKDQKEIDLFSNNLEITKVLQFDL
                     NHSWNKTEKNTQLDEEECLKIIKNTIEYINNFNKNISKQEFEELSKEENTHKTHKLIE
                     RLMMQEEGTSGLIEKDLKEIKKDKSYFFDKMSSFAKNQTIEKSRTKEDYSINN"
     gene            16152..>18309
                     /locus_tag="RJ285_000625"
     CDS             16152..>18309
                     /locus_tag="RJ285_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase 3"
                     /protein_id="HDV7383424.1"
                     /translation="MKLFIAEKPELGRAIAEGLDGNYKSGEGYIQKGDNIVTWAFGHI
                     LELAKPEEYDEKYKLWKLEDLPLPIKEFKYLPKKESKKQLKIICDLIHSDKITSIVNC
                     GDADDEGQILVDEIIQYSKTSKPVFRVLINDLTPKAVKEEIAKIKPNADFKGMSERGF
                     ARSQADWIVGINLTRAYTIMARKNGYEGILSVGRVQTPILALIVNRDKEFENFKSINY
                     YSLLGDFNINNNTIKARLKTEDKILDENLAKEIKESCENQNAKINLKIENKKEYPPLP
                     YNLLVLQAECAKLFGFSPDKTLEITQILREKHKAITYNRSDCQYLPETMFEQAPNILN
                     IIKENLNSNDEIQALIASSDLTIKSKAFNDANISAHYGIIPTQNKISSQLTQDELVVY
                     NLIAKRFIIQFFHPREYQTTTINLEVNQRIFTATQNKTTKSGFRSLWQNIDSEEEQEN
                     NENDINDLSILKNGDIAKCSLIQIEKKQTKPRPYYTMTTLLKDLNSVAKYVSDERIKK
                     LLIEKDKDKKGESGGIGTPATRSNHIKTLIEREYIEVSKDKKQIIKSTKKGRDLIKLS
                     PKSLITPDMTALWFEQQKMIEISELRREQFLEEITKEVISEIQRIDKNQEFKILDNEN
                     KPKIQCPQCNKGFLTKRKGKYGNFWGCSEFKQGCKAIYPDNKGTPNFETKQASNDTTH
                     KCPQCNKGFLQRIKSKNGNSWWWGCSEFKQGCKAMYY"
BASE COUNT         7268 a         2414 c         3035 g         5592 t
ORIGIN      
        1 atttaagaca taaataaaac gctcaatttt ttaacgaaag gatatggatg aaaaaaaggc
       61 tattatcatt aattttaatc agtcctattt ttgcatttgg tgctggcggt attgataaag
      121 ttaatacctt tatgcaaaac ttaagcattg ctttgtatgc acttggtgga gttttactca
      181 caattgcact tatgtggggt gcttccaaaa ttatgtatca agggcaaact cttagagaag
      241 ttgcacctgt ttttatcggt ggcgttattt ttggatcagc ttcggcaata gctggttata
      301 tcattacata aataggacta gctatggaga aaaatccact ttttaaaggt ttaacgcgtc
      361 cacctatgat ttttggcgtt ccgatgacac cttttgttat agcgatggga tgtatcattt
      421 taattgcatt ttatagtcaa aacatttttt tagttggctt ttctattcct gtgtttttta
      481 tcatgaaagc aatgacaaaa agagatgatt ttatttttcg attaatgttt ttaaaaatga
      541 gatttttctc caatcctgct tccaaaaatt atcataaggt taaaacttac agcacaaact
      601 cttatagaca aatgccgcca aattctaatt ttccaaaaat atctgttttc ggacttaatg
      661 cagaacctag ttttgaaaaa ttaattcctt tttcatcact tataaatgat tctgtagtca
      721 ttacaaaaga ttatttttta atgacaactt gggagattgg aggaattagt tttgaagcag
      781 aagaagatga tgaactagat attaaaaatg atcttttgaa tatgcttttt aaatcttttg
      841 ctaacgaatc tgtaagcttt tattttcata attgtagata ttctatcgaa gacaaattaa
      901 cttcaaaatt taataatgct tttttagaag aaattgacag aaaatattat gagagtttta
      961 agcaaggaac tcttagaaaa aattctttat atttaactct tattttcaat cctttaaaag
     1021 tgaaaataga aaaaacaact tttatgaaaa gttcttttga aaataaaaga aaaacaatta
     1081 gcgtattttt agctaaattt agcgaatttg ctgatagact agaagcaaat attaaagatt
     1141 ttaacccaaa aagattaaaa acatattcca aagatgataa aacctactct aaacaactag
     1201 aattttataa ttatttactt ggtggtaaat ttaatcctat aagagtatta ccaagtccta
     1261 tagaacagta ccttaatggc aatttacaaa acatacaatt tggacacgat actattcaat
     1321 ttaaccaaaa tgatagcaca aaaaaatttg ctagatgcat tgaaattaaa gactatacaa
     1381 atgaaacttt tgcaggaatt ttagatatcc taatgtattt agatgtggaa tacactgtaa
     1441 ctcaaagctt ttctcctatt cctagagtgg atgcaaaatc agcaatatct aaacagaaaa
     1501 aacaactcat tgcaactgaa gatgatggat tttcacaagt agagcaaata gatgaagctt
     1561 tggatcaact tacaaatggg gaaatctctt ttggcaaata tcatttttca attcttgtgt
     1621 atggaaatac tataaaagaa tgtaaagaca acacaaatga agttgttaca aagatgaacg
     1681 aattaggatt tggagtaact ttagcaacga tcgccctacc tgcgacattt ttttcgcaac
     1741 taccatcaaa ctttgctatc cgcccacgca ttaatcttat ctcatccatt aattattcat
     1801 ctttaattgc tctacataat ttttctatgg gcaaaagaga taaaaactgc tggggtgacg
     1861 ctgttagcat tttaaaaaca ccaaacaaac aaccttatta ttttaatttt caccaaagtt
     1921 ctggtgcaaa taaaaatgat tttggaaaat tcttcctagc aaatactttg attttaggtc
     1981 aaagcagtgg cggtaaaaca gtgtttatga actttattgt agatcaaatg atgaaatacg
     2041 ctagcaaaga tacatttcct gatgatattc ctgaagataa aagaaaattt acagccattt
     2101 atttggataa agataaaggt gcgttaggca atatactttg tgctggcggt agatatatta
     2161 gcattgaaaa tggcaagccg acaggattta atcctttcat ggttgaaagc acacaagaaa
     2221 atataagaca acttcaatcg ctaatgaaac ttttagtaac tagaaataat gaaattctta
     2281 caactagaga agaagaaatg ctcaataatg ctgttaattc tcttatgaaa ggttttgaaa
     2341 aagaggaaag aaagtatcct atttctttac ttttagaaaa cttaactgaa aatgtagatg
     2401 atgataattc tcttaaatca agattagcac tttttaaaaa aggcaaacaa tttggctggg
     2461 tatttgataa cgaatacgac aatttagatt ttcctgacga tatcaattta tttggaattg
     2521 atggaacaga atttcttgat gataaagatg tatcagggat attaagctat tacattcttt
     2581 ggcgtgtaat gagcttggca gatggtagaa gactttgtat tgatattgat gaagcttgga
     2641 agtggctaga aaatgaaatc gtgcaagaag aagttaaaaa caagtttaaa accattagaa
     2701 agcagaatgg atttttaaga cttgctacac aaagtttaga agacttttta aagcttaaaa
     2761 atgctgcaac tcttatagaa cagtcatcaa ctatggtatt tttatctaat ccgaaagcca
     2821 aagaagaaga atatgttaaa ggagtaggtt taagttatga tgagtatatg atcattaaag
     2881 gtttcaatcc tgtgaaaaga caatttttaa tcaaaagaca agatgaaaaa gtaatttgca
     2941 ctcttgatct tagccctttg ggtaatgaaa atttaaaaat attatctaca gaaacagcat
     3001 acattgatgt cattgaaaaa attttttcac aagaaaataa aagtcttgat gaaaaagtat
     3061 tagagctgaa agaaatttat aaaaactcat aggagatgaa aaatgagtaa taaagtgatt
     3121 attaataaac aagaagtgca atttgacact caaaataatc aaatcttttg cacaagttta
     3181 gatgtggcta aggtttttgg aaaaagacat tttcatgttt taagggatat tgagaacatt
     3241 ttaaacgatt tgcgagaaat agggacttct caagacctat ccaattttgg ggagacctac
     3301 agaaatactg aaattagggg ttttggcaaa gttaaaggga aaacaagaaa agatcgttgt
     3361 tataatctaa ctcgtgatgg tttttcactt ttagcgatgg gctttacagg taaaaaagca
     3421 ttacaattta aaattgcatt tattaatgct tttaacgaaa tggaaaaact tttacaaaaa
     3481 gaaattaaaa gccctaacaa atacttaaca gatttgatgg aacttattta tccaaactta
     3541 ccacaaaacg attacaaagt tagtgtgatt atcacagata acccttattc taaagaagct
     3601 aaaaatgtat tttctttgaa ttatcttgtt gataatcgca caccaaaaga tccaaagaag
     3661 ttgcaatgag tgataaagaa ttacaaaaag aaatattagc tttagaaaac gatgttaagc
     3721 aactagaagc aactattgat gtaattaaac aaagaatcac tcatcttaaa gatattgctt
     3781 gggatagaca aagtaaaaaa gaaagttctc aaatgtataa agtgttaaaa gaagataaaa
     3841 cacatacaag ggttaaaagt aatgtaggag atattaaagt agataaagac tttatggata
     3901 aagaaattaa aaaacattta gataatccaa atttaagagg aatggttact acacaagaga
     3961 tgttatcttt tcctaaggtg gctaaaggtg tggaagctaa caacgaagca agaggctata
     4021 cttggcaagt aaaagcaaac gatggaaata ctttagttta tggaagtaga aaatatgaaa
     4081 ccaataacga aaaaattcat aggttagcga caagccatag taaaacagag aagaatgaaa
     4141 gacaagcgga agtgggtggg cgtagtcatc cccaccatcc catatttaat gacttcaatt
     4201 ttcgcaaatc cgctgaaaat attatatcac aacaaaacaa atccacaaat gattttaaag
     4261 caaaattaga agaatttagc accaaaaaaa caaatgcaat tgaatctata aataaggagt
     4321 ttaaaagatg aaaaaatatt acaccaacaa aaaggagtta aacaatgaat aatgtaaatc
     4381 taatcggata cttaggaaaa gattttgaag taggcactac aaatagcgga agagtttatg
     4441 caaaaaattc tcttgcaatt acaaagcgat ggaaaaatga aagaggcaat gaagaaagta
     4501 gcacgacttg gatacctatt gttttatttg gcaaaagtgc agaaagtgca tcaacacaca
     4561 ttaaaaaagg ttctcagttt gcgtgtagtg gagaattatc atccaatcaa tatcaagatg
     4621 aagatggaaa tactagaaca atgctaaccg tgattgtatc taaattttat tggcttggca
     4681 aaaaagataa agatgacaat ggaacacaaa atccacaagt cccaccaaaa gagccaaata
     4741 ttgattatga aaacacaaat atagaatctg aagaaacaca agtattttaa gatttaagga
     4801 taaaaatgtc tataaaaaat ttaagtgtag aagaattagc gcaagaatta gaaacttcaa
     4861 atcatgaaaa gctgattaaa gctttgtttt tatttgaaaa aaattcttca atggaagatc
     4921 ttaattcaga tcaaatagaa ataattttag atgaagtata tgaattttat atcaatcata
     4981 aatctatatc ttctttttta caagaagata taaaccaagc attagataaa gctattgata
     5041 aagagctttg caaaaaacaa gaaaaatcat ttgaaaggta aaaaatgaaa aaaaatatct
     5101 ttggtgttaa taaagccata gggaaatctc atccccatga aaatggggca agactaataa
     5161 gccttgacta taattataca aaggagtata attataacta tgagatttgt gtaactcaat
     5221 ttaaccacct cttttctgag gttaaattta gccacagggt tgcagcccta tggctaaccc
     5281 cacaaaatta tatccaaaaa tttaaaaaat ctattcttat tcttacttcc ttattagttt
     5341 tgcctaactt agcatttagt gctggtattc ctgtagttga tgtaacagca aatcagcaaa
     5401 tggctacaca aaacgctaaa caagtggcag aatgggctaa agatgcttca agatggactg
     5461 aaacagtagc acactatcaa aaacaaattc aagcttacaa agatgaactt ttatcaaaaa
     5521 caggcattag agattcagta acttttctaa aagatattaa acaaatatat tcagattttg
     5581 ctgaagttgg gcaaaatatt caatcatttt acaatgatgt attaagagat ccacaaaaat
     5641 ttttaagtga taaaggtaat gaaatttttg gaaaatatac gagctttgat cgatgtaatt
     5701 ttgatttttt aagtcaatca gaaaaaaaca tttgcaaaat gaatttaatc acttatgctg
     5761 ctcaagtaga aacctataat caagcttcaa aacaaatgga tacgattagt caaacactcc
     5821 aaaaattgca agataaatta gtaaattcca aagatattaa agaaagcaca gatgttggca
     5881 atgctattca gttggaagtg gcaaaaattc aaatggttaa aaatcaagtt gatttagcca
     5941 atgcaagtta tgaaaaccaa agaaaaatta aagaagatat ggctatgcaa gaatattcta
     6001 agtcgttaca aaagccacga gaaagtgcta tggaattttt taagaacaac aaatgaattt
     6061 agatcttttt caaactctag gtaaaagcat acaacaaatt gttgatgcta taagacaagt
     6121 aggcacaaat gataaggttg cagaacttag cgtattgctt tctattatta tcactttagt
     6181 cattatgtat aaaggctacg aagtcttaat gggtagaagt caaagcccta ttagagaatt
     6241 aacttgggat atagttggaa agcttgttgc cattactttt gccttaaatt tagggggttg
     6301 gctagattta acaatttcaa caatggatgg attatacgag tgggcaggag gcggaacgca
     6361 aatgtataaa acactagatg aaatgtatgc aaacacagca caacttacaa acataatttg
     6421 ggctaaatca agtggtgttg gaggtgctat tttagctatt gtagcaatgc tactttgtta
     6481 tgtaggattt gcaattgctg tagttcctgc acttacaatc tttgttgtta ctaccttcac
     6541 acaaacactg cttgtaatca ccgcccctat agtattttgg cttttagttt ttaaagccac
     6601 taaaaatgtt tttacacagt ggataggact tttactttca aatactttag tcattttgct
     6661 tgtaggctta tttttgggtg tttttatgga gcaaatatca acttggatta agtattttgc
     6721 aaaagtaact caagcaggag acgaagtatt aggcacaagt attttctttg tcattgccgc
     6781 tttagttctt gtcattatga ttatttctgc aaaactttat gccgaaaaag ttgcaaatgt
     6841 ttcaatggaa ggagctatgg gcggagtaat aggttctgtt ttaaaccctg ttggtagatt
     6901 agcaggttgg gctggaggca aagtcgcagg aaaaactgta aatacagcaa aagctggtgg
     6961 aaaattagca gccaaaggta ctttggctag tgctaaaggc ggttatagtt ttgctaaaaa
     7021 aatgtatgaa agggctagaa atgcaggcta aattaatttt tattttatta cttggtgttt
     7081 tattttttag tgcttgtagc actaaaaatc agggtaaata tgatgaattt tttaacaatc
     7141 aaacaggatg gattcctgtt aatactcaaa acaaagattt aaataaagga actatggatg
     7201 aaaaatgagt ttaatactgc aatagattat gaagcaagtt ttagatactt aattgaaaaa
     7261 agtaataaaa gagcttggct tattgctttt atttctattt ttatagccat tatttccatt
     7321 atagctgttg ttttacttac tcctttaaaa acaatagaac cttatgtaat aagagtagac
     7381 aatactacag gaatggttga tattttaacc atgcttgatg aaaaagaaat taaagcaaat
     7441 gaagcattag ataaatattt tattagcact tatgtaaaag ctagagaagg ctattattat
     7501 gatcttttaa atcaagatta tttacttact caattaatga gttctgaaaa agtagcaaat
     7561 gaatataggg ctttatatga aggtgataat gcaagagatc aaattctaaa aaactccaat
     7621 gaagtaagtg ttcaaatttt aagtattgtt ttaggagaaa gtaacggagt gaaaactgct
     7681 acagtcaggg caattattac tacaaaaaat ttaacttcca aaggaacaac tcaagcaaca
     7741 aaagtaataa cattaagtta tgactatatc ttagcaaaag ctagcgaaga aaacagattt
     7801 ttaaatcctt taggttttaa agtattaact tatagaattg atgacgaggt ggcacaatga
     7861 aaaaaataat cttgataaat ttattgttgt gtagttttat ttgggcttta aatattccaa
     7921 aaacttctac atttgataaa agaattgctt atgcaattta taatgcaaac gatgtatttc
     7981 aaattaatgc aaaaaatggc tatgttagcg ttttagaatt tggtaccgat gaaagaatta
     8041 tcaatactgc tacaggtttt gcagaaggtt gggatttaat tgaaaaagac aatcttttat
     8101 ttataaaacc taaagcttat aaaacacaac ttgttcaaca agaaaacaat aatataggag
     8161 agagtcaagc atcacaagaa ttcgttttag atccaaatcc tcatgattgg aaaactaacc
     8221 taattgttat tacaaatcta aatacttatg tattcgattt aaaacttgta aaccaaaata
     8281 ataacgctac ctataaactc agtttttctt accctaaaaa agatttaaaa gccgctaaag
     8341 aatttttaga agcacaagaa caagaaaata tacgcagaga tttaaataaa aataccattc
     8401 ctagaaattg ggatttttat atgaaaatta acaaaggtag cgaagacata agtccaaatt
     8461 ttgcttatga tgatggtgtt tttacatatc ttggttttga taatactaaa acttttcctg
     8521 ctgttttcat gtatgataat ggtaaagaaa gtattttaaa tactcatatt aaaaaagatg
     8581 gcaattatga agttttagta attcaaaaaa ttactaaaca aatcttgtta agaagtggcg
     8641 ataaagtcgt tggtattttt aatcgtggct atgcaaaaaa tcctttagat aaaacaagag
     8701 aaacctccaa tgaaaatatt caaagagaga taaataaaaa ataaaacgaa tgaaactaaa
     8761 aggaataagt atgcaagata aagaacaaga taatttagac aatgattttg aaaatcatac
     8821 aagtgattta cacgatcaaa aaaatcatct tagaaagata caagcttatg taatttttgc
     8881 tgtgggtgga ttattattag ttttaatatt agtttatttt ttaaaatcat ttttaagtag
     8941 caatacaact accgaagaag tacaaaaaga agataataaa gatttggcac aaagtgttaa
     9001 aacaaaggaa tttattccac ctcctccaca aaaaacattt gatgaactaa ttgcacaaga
     9061 atcaccaaaa ccgacacaag atttaatact tgaacccaaa cctccaaagc ctagaattgt
     9121 taaaggtgca ggagttactg ttgtcgcttc atctaataat gatggatttg gaaataatgg
     9181 cacaggaaac agggaagaat ttggagaaaa acctaacaca gtgtttgagt ttggacaaaa
     9241 tggttcttta caaaactcta ataatttaca aggtggtagt aatggagatt ttgttggaga
     9301 ggtcttcact cccacaatcg ctaaagttag cgaatttgat caaaatttac tattacctaa
     9361 aggaacttac ataggctgtg ctttaaaaac aagattggta agttctatta aaggtggaat
     9421 cgcttgtatt gtatcaaatg atgtctattc tgctaatgga aatactcttt taattgaaaa
     9481 aggtagcact attacaggaa cttttaatac tggacaaatg gatgatggaa tggatagatt
     9541 atttgtaatt tggcaagaaa ttagaacacc gaacaatatc attatccctg tttattcagg
     9601 tgctaccgat gaattaggtg caagtggcgt tcaaggttgg gtagatcatc attacttaaa
     9661 acgatttggc tctgctgttt tactatcaat gatagatgat tcactggcta tcttagcgga
     9721 tcaaattgca ggtaaagata ataaaaataa ttatgccaat tacactgaaa atacaagaga
     9781 ttctgcaaaa gaaatcgcaa atacagcact agaaaaaatg attgatatta aacctacact
     9841 ttataaaaat caaggtgatt tggtcggtgt ttatgttaat cgtgatattg atttttcaaa
     9901 agtttataaa cttacaagga aaaagaatgt caataacgct agataaatat actcaaaaat
     9961 tttttggaga atttttaaaa gatgataata tcaatgaaat ctgctataac ggcgataata
    10021 aaatttgggt acaaaactct aaaggattat gggaatgtat agatactaaa cttgattttg
    10081 aacaagctgg acattttgca actgcttcag cctcattcaa aaaagataaa atagatgtat
    10141 cacgccctat tcttagttgt attctagtag gtggagagcg tatgcaaatt gttattcctc
    10201 ctgctacaaa aagcgaacac atttcaatta ctattagaaa gccaagcaaa actcgcttta
    10261 aaatggaaga tcatgttaaa agtggacttt tcgaagattt aaaccctgat gataaaaata
    10321 taatcaaacc aagcgatgaa gaattaatca agttatataa agaaagagat tatcaagctt
    10381 ttatatcaaa agctgttagc tatggtaaaa atatcatcat cgctggtgaa actggcagtg
    10441 gtaaaaccac ttttatgaaa actcttattg atttcataag cctcgatgat cggatcataa
    10501 caatagaaga tgttgaagaa atcaaattct acgaacacaa aaatttcgtg caattattct
    10561 atccgagtga agcaaaaagc acagattttt taaattctgc aacgctttta aaatcttgtc
    10621 taagaatgaa gcctgacaga attttacttg cagagcttag aggtgcggaa acttatgatt
    10681 ttatcaatgt cttagctagt ggacatggtg gaagcattac aagttgtcat gcaggaagtc
    10741 ctgaagaaac attcacacga cttgccttaa tgactttgca aaacccacaa ggtcaatgcg
    10801 ttccttttga aattatccaa aaaacactta aagatttaat tgatattgtc gtgcatatcc
    10861 acgctcatca cggaaaaagg cgtattagtg gcatttattt taaagaaata gagaatatca
    10921 aattggagag ataaatgcaa gataataaaa gtattcaaat tatttttctt gctgtggcaa
    10981 gttttattct cacttactta ataacgccca ttgttttttt ctttttaaat aaagtaaaaa
    11041 taatgaaagc gattgaaatt tataacataa attttacgct acaagcaatc gctaatggtt
    11101 atccaaaaat atggctttct ttgagtatta cttttggcat ttgttttgtt gttttttctg
    11161 ttttggtgtt atctttaaaa gccaaaaaat ctcaatttgg tgaagctaga tttgcaaatt
    11221 ttaatgagat taaaaaaatg aatttatttg gcgataaagg aattattatc ggaaaatata
    11281 aaggaaaatt gctaagattt ggcggtcagc aatttgtagc tttaggagct cccacaagaa
    11341 gtggtaaggg tgtaggtata gtaataccaa acttattaga gtggcaagaa agtgctgttg
    11401 tgcaagatat taagcaagaa tgttttgact atacaagcaa atatagaaaa gagattttaa
    11461 aacaagaagt gtatttgttt aatccatttt caagacagac tcatcgttat aatcctttaa
    11521 cttacattga tatgagtgat aaagaacatt gcgatagtca attaatggat ttggctaaca
    11581 tactttatcc acttgatggg gattctactt caaaattttt taatggttta gcacaaaatc
    11641 tctttatagg tctttgttat ttatggcgtg atttgcaact cacagatatg ggtaaagaat
    11701 ttcaaaaatc ttttaatgta gatgtaggaa attttaactt ttacaatatc ttgcaactct
    11761 caaaaggctt ttcactcaag aatgaagaaa aaaccttaag aggttttgat gatacatata
    11821 atttcttggt ctattgtgaa atcttagatg aagcaactat aaggcgttta gaaacttatt
    11881 ttaatattaa ctcagatgct actaaatcag gtgtaatgag ctcttttaat gctccgcttg
    11941 tgccatttga aagtgaaact ctaagattaa gcacagaaac aagcgatttt gatttgcgag
    12001 atttgcgtaa aaagaaaatg acaatttata taggtattac acctgatcaa cttgcaaatg
    12061 ctcaatttat tttaaacatt ttttggtcgc aacttatttt attaaacacc aaagaattgc
    12121 cacaaagcaa taaagaatta aaatacactt gtttaatggt tatggatgaa tttactgcac
    12181 ctggtagaat tcctatctat caatcagcaa tcagttttat ggctggatat tggttacgct
    12241 ctttgatgat ttatcaatct aattcacaac ttgaaacaca accgccttta ggttatggca
    12301 aggaaggggc aaaaaccctt ttgactaacc atgcttgtca gattttctat gcaccaagag
    12361 agcaagaaga cgcagaagct atctctagga ttttaggaaa tactactttt aaaacaaaat
    12421 caagaagtat taatacaggc aataatggag gtggatcaca tagtattagc gaagcaagta
    12481 gggctttaat gttgccacaa gaacttagag aaatgccttt tgaaaatgaa cttattacta
    12541 ttgatagtgg taagcctatt ttatgcaata aagcattcta ctattcagat tcatatttca
    12601 tggataaatt taaagctgtt tcaaaaagcc tatcaggaat aaaaaaaatc ccttcacgca
    12661 aacaattaga agatgcaatc ttgaaaggag aatgcaaaat taaaattcaa attataggag
    12721 aaaacaatga aaaaaatgtc gcttagttta gctttaatcg cttcattaat ggttgggtgt
    12781 tctgcaccaa aagcaaaacg attagatgat ggctctgcat tatctattaa taattctctt
    12841 ttggagcata aatacagttt tgttccgaaa gatccttatt taagtggatt taattggact
    12901 tatcatattg tggttgaaaa aaagactgtg gatgatgatt ttattaaaaa tgatcttgtt
    12961 actaaaactt ttttactcgc ccacaattca acaaaaatta ttttagtagg tagagaggat
    13021 ttaattaaac aatacaaaca ttattttgaa aaaaatcaag ttcttgcacc catagaatta
    13081 caacctgtga gtcctattga acgcgatttt aataaagtaa atatcttatt tttcaataaa
    13141 actaacttag gagaataaaa atgaaaaaga ttactttcgc aacaatttta ttttttggag
    13201 ttgtatcatc atctaatgca ataaaattag atattttaac aggagatact aaattagctt
    13261 gtgaggctat gctttgcctt gcaagtcctg ttaagccacc tgaatgcggt gcagctttgg
    13321 caagatattt tagcattgat gcacgaaaat gggcagatgt aatcgctaaa cgcagaagtt
    13381 ttttaaattt atgccctgtc gatgcttcaa gtgatcctga aatgtataaa tataaaaatg
    13441 atattttggt tcatttggat ggggaatgtt ctgtatctgc attaaataac cgagttgaag
    13501 acactctatt aagaactgaa accatacaaa aatgctctca tggagatggt tgtacaactg
    13561 aaattataaa gcattatgga tatagaatta atccacaact tacaaattct tgcagacttt
    13621 tagcttcatc aaaatacaca gattatcatc taaaatatac ctgcaatact aaattttatg
    13681 aaaaaaaaga ctgggaaaga ggttatgagt taaaagaagt atcgcaagaa atttttaatg
    13741 ctttgcctat ctcgcaaaga gaacaaggag agaagttagt tcctgtaagt tacgcagagt
    13801 ttgttagatt gcctgctgac aaaagaaagc aaggaggatt tggcaaatat tacagagttg
    13861 atattgcttt ttaccaaaaa ataattatta aaaaagattg ctggataaat gagaaataat
    13921 gatgaatgaa gaaattaatt ctaatgaaaa tagcctttat gaattggtta aagaagataa
    13981 ttcaaccaat atggttatac aaaattataa tgaactatta agcaaatttg aaaatcttat
    14041 caaaacaatt attgctaaaa ttgatattgg aaaacagaat tcaagcagta atacagaaga
    14101 tggaattttt aaagatttag aaaaaaatat tattgagcta gataatactt ttctagctct
    14161 tatttcttat tttaaaaatc cgccaagcga tgaagaaaaa gaatttatta ataaaacagc
    14221 ctctattaaa aaaacaatgg aagattttgc agaatttgct aatgaaattc aaaaattatc
    14281 gctggatgat aaacttaaaa aatataatga acaaatcaac aaattttgtg aaatagtaga
    14341 atataaactt tctcataatg cagaaaatta taattcattt ctcgatcatt tcgttgagaa
    14401 tggaaaatta aaattgaata tattttcaga aatttttaca aaaatgacaa aaaatacaaa
    14461 atggtatctt atatttttta gttttacttc tatagggtta ggtatagctc ttggcatttt
    14521 aattttgctt acttatataa aatattcaga atataacaat ttaaaagaaa gagtaagcac
    14581 aatcactcaa ggtttagcca ctatctctat tgatgaaaat agcaaaggaa gctttacctt
    14641 gagctttgca aaaaacaaaa aaactatttt taatgagaat aaaaatagta ttcaaatcac
    14701 actacaagga ggtgaatgaa caggggaatt atatacaaaa aaaatgcaaa aaacaaaaaa
    14761 caaatcacaa atttattaaa aaaggagaaa aaatggcatt tggaaaatta gttaacgata
    14821 aaattgttat cgatacaaac aatgctttaa attatagaag cagggaaggt gatattcaac
    14881 aaagaaaagt agatactgct ctcattgata ttattaaaga agctggacaa gttgccgcaa
    14941 tggaacacgg agctgtgctt ttttccgcaa aagttaatga ggtgtggaaa aactattttg
    15001 ttaatagaga tgaaaaaact cacaatatag ttttaaaacc tacaaattca caaaatagag
    15061 atgatttcat ttatatcaac tctaatataa atgagcaagg ttatttttac tacacaatta
    15121 atcagaagcg agaatctgca aaagaattaa ttgaaggagt tggaattgta gaacaccaaa
    15181 atcaagatgg aactaaaagt cactatttag aaactaatgt aaggctttat aatgaagaat
    15241 taaaacgaga gcttaaggaa aaaggtaatg agtttatagc tgtaatttca aatgctggaa
    15301 ttaaagttgt taatgaagct gaaatgaaag cacaaaaaca agaacaacaa atacagcaaa
    15361 ctcaagaaat caaagagcct gaaaaaactc aaaaccaaga gtttggaaga taaaaatatg
    15421 caccttataa aggtgcatat ttatagttat tattatttat taatagtaat tataagtaac
    15481 aaaattaaaa ggaataaaaa tgaaagtaaa ttatatagag cttgaaaaaa aagaaggaca
    15541 aataggcaat attccatata ttataataaa agttgaatat ccgaatctaa aaaaattaca
    15601 agagaatgat cttttaatgg caaatgataa aggacaatgg ctttgcggtt ttataggctt
    15661 aaaagaaaat caaaaagtag attttaaaga attagataat ggatatatag ctcctcaata
    15721 tttatattta aactcaaaag atcaaaaaga aattgattta ttttcgaata atctagaaat
    15781 tacaaaagtt ttacaatttg atttaaatca ttcttggaat aaaaccgaaa aaaatactca
    15841 attagatgaa gaagaatgct taaaaatcat taaaaacacc atagaatata ttaataattt
    15901 caataaaaat atcagcaaac aagaatttga agagctaagt aaagaagaaa atacccataa
    15961 aactcataaa ttaattgaaa gacttatgat gcaagaagaa ggaacaagtg gattaataga
    16021 aaaagattta aaggaaataa aaaaagataa aagttatttt tttgacaaga tgagtagttt
    16081 tgcaaaaaat caaactatag aaaaatcgag gacaaaagaa gattatagca ttaataacta
    16141 gaaaggtgaa aatgaaatta tttatagcag aaaaacccga acttggtaga gcaattgcag
    16201 aaggactaga tggcaattat aaaagcggag aaggatatat acaaaaaggt gataatattg
    16261 ttacttgggc ttttgggcat attctagagc ttgcgaaacc tgaagaatat gatgaaaaat
    16321 ataagttgtg gaaacttgaa gacttaccac tacccattaa agaatttaaa tatttaccca
    16381 aaaaagaaag taaaaaacaa ttaaaaatta tttgcgattt aatccatagc gacaagatta
    16441 cttctattgt aaattgtggg gatgcagatg atgagggtca aattcttgtt gatgaaatta
    16501 ttcaatactc caaaacttct aaacctgtat ttagggtttt aattaatgat ttaacaccaa
    16561 aagcagtaaa agaagaaata gcaaaaatta agccaaatgc agattttaaa ggaatgagcg
    16621 aaagaggttt tgcaagaagt caagcagatt ggatagtagg cataaatctt actagggcgt
    16681 ataccataat ggcacgaaaa aatggatatg agggcatttt aagcgtaggt agagttcaaa
    16741 cgcctatttt ggctcttata gttaatagag ataaagaatt tgaaaatttt aaaagtataa
    16801 attattattc tttgctaggt gattttaata tcaacaataa tactattaaa gcaagattga
    16861 aaacagaaga taaaatttta gatgaaaatt tagctaaaga gatcaaagaa tcttgtgaaa
    16921 atcaaaatgc aaaaattaat ttaaaaatag aaaacaaaaa ggaatatcca ccgctacctt
    16981 ataatctact tgttttacaa gctgaatgtg caaaactttt tggttttagc cctgataaaa
    17041 cattagaaat cactcaaatt ttaagagaaa aacacaaggc tataacttat aatagatcag
    17101 attgccaata tttacctgaa acaatgtttg aacaagcacc aaatatttta aatattataa
    17161 aggaaaattt aaattctaat gatgaaattc aagctctcat tgctagcagt gatttaacaa
    17221 taaaaagcaa ggcttttaac gatgctaaca tttcagcaca ctatggaata atccctaccc
    17281 aaaataaaat ttcatcgcaa ttaactcaag atgaattagt cgtttacaat ctaatcgcta
    17341 aaagatttat tatccaattc tttcatccta gagaatatca aactactaca attaatttag
    17401 aagtaaatca aagaattttt accgctactc aaaacaagac aacaaaaagt ggttttagaa
    17461 gtctttggca aaatatagat agcgaagagg aacaagaaaa taatgagaac gatataaacg
    17521 atttatctat cttaaaaaat ggtgatattg caaaatgctc tttgatacaa attgaaaaaa
    17581 agcaaacaaa gccacgccct tactacacta tgacaacgct acttaaagat ttaaatagtg
    17641 tcgcaaagta tgtgtctgat gaaagaatta aaaaattact gattgaaaaa gacaaagaca
    17701 aaaaaggtga aagtggtggt ataggaacac ctgcaacaag atctaatcat ataaaaacat
    17761 taattgaaag agagtatata gaagtaagta aagataaaaa acaaattatc aaatccacta
    17821 aaaaaggtag agatttaatt aaactttctc caaaatcact tattactcct gacatgacag
    17881 cattgtggtt tgagcaacaa aaaatgatag aaatatcaga attaagaaga gaacaattct
    17941 tagaagaaat cacaaaagaa gtaattagcg aaattcaaag aattgataaa aatcaagagt
    18001 ttaaaatact agataatgaa aacaaaccaa aaattcaatg tccgcaatgc aataaaggat
    18061 ttttaaccaa acgaaaaggg aaatatggaa acttttgggg ttgtagtgaa tttaaacaag
    18121 gttgcaaagc catttatcct gataacaaag gcacaccaaa ctttgaaaca aaacaagcaa
    18181 gcaacgatac tactcataaa tgtccgcaat gcaataaagg atttttacaa agaataaaaa
    18241 gtaaaaatgg taatagttgg tggtggggtt gtagtgaatt taaacaaggt tgcaaggcta
    18301 tgtattatg
//
LOCUS       DAPIWU010000023        17706 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.023, whole genome shotgun sequence.
ACCESSION   DAPIWU010000023 DAPIWU010000000
VERSION     DAPIWU010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17706
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.023"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1540)
                     /gene="recJ"
                     /locus_tag="RJ285_000626"
     CDS             complement(<1..1540)
                     /gene="recJ"
                     /locus_tag="RJ285_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDV7383425.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLILTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMV"
     gene            complement(1527..3158)
                     /locus_tag="RJ285_000627"
     CDS             complement(1527..3158)
                     /locus_tag="RJ285_000627"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HDV7383426.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESAEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDTNSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            3278..3901
                     /locus_tag="RJ285_000628"
     CDS             3278..3901
                     /locus_tag="RJ285_000628"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HDV7383427.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            4021..5406
                     /locus_tag="RJ285_000629"
     CDS             4021..5406
                     /locus_tag="RJ285_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDV7383428.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLTMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFVLQYLANFPDAEEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     DKQIREIQTFSNIILGLIPSNIITAINKENIIAIVIFSFFIGISAKKISKKEECEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(5445..7814)
                     /locus_tag="RJ285_000630"
     CDS             complement(5445..7814)
                     /locus_tag="RJ285_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDV7383429.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLCEYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(7830..9158)
                     /locus_tag="RJ285_000631"
     CDS             complement(7830..9158)
                     /locus_tag="RJ285_000631"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7383430.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVVSYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            9236..10138
                     /locus_tag="RJ285_000632"
     CDS             9236..10138
                     /locus_tag="RJ285_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7383431.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFNINSKINIKEIFNNSIK"
     gene            10251..11129
                     /locus_tag="RJ285_000633"
     CDS             10251..11129
                     /locus_tag="RJ285_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HDV7383432.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFKER
                     EYPVYFGKRCNQATPPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            11193..12107
                     /locus_tag="RJ285_000634"
     CDS             11193..12107
                     /locus_tag="RJ285_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDV7383433.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAELGKSLYM
                     DKSLSKDGKVSCNTCHRLDRHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAVAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            12097..13875
                     /locus_tag="RJ285_000635"
     CDS             12097..13875
                     /locus_tag="RJ285_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7383434.1"
                     /translation="MTNKKSSFLIKFIILSTLVLAFILVLLAIIFNNYSSSKDNKELI
                     NIVQQLEISDEKINSVFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYNMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNVVANMDSLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            13981..14148
                     /gene="dba"
                     /locus_tag="RJ285_000636"
     CDS             13981..14148
                     /gene="dba"
                     /locus_tag="RJ285_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HDV7383435.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            14160..15686
                     /gene="dsbI"
                     /locus_tag="RJ285_000637"
     CDS             14160..15686
                     /gene="dsbI"
                     /locus_tag="RJ285_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HDV7383436.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVVFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(15707..16381)
                     /gene="queC"
                     /locus_tag="RJ285_000638"
     CDS             complement(15707..16381)
                     /gene="queC"
                     /locus_tag="RJ285_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDV7383437.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            16458..17684
                     /locus_tag="RJ285_000639"
     CDS             16458..17684
                     /locus_tag="RJ285_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HDV7383438.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
BASE COUNT         6105 a         3056 c         2544 g         6001 t
ORIGIN      
        1 ttaccattcc cctaaattca ttcttagaaa tacttccaag caaagaaata ttttgattca
       61 attctggctc tttatcaaaa ttaaaaaata aagcttctat ggttttattt tccttggtta
      121 aaataagctt taagtgtttt tcatctttac ctagaagttt tttatttttt acacaaagat
      181 tttctaaaac aaaaaaaggt cgtggatttt tatgtccaaa aggttcaaaa gattctaaaa
      241 tttcaagcat ttcaaaatca atttcgctag gttctaagat tcctaaaatt tcatctgtat
      301 ccaaaaattc actttcagaa atttgcgaac attctttttt gattttattt ttaaattgtt
      361 caaaattttc agagtttaaa ctgattccag cagcaccttt atgaccacca taattgctta
      421 atatagaatt tgtcttagaa attaaagcta aaatatcaat cttgccaaca cttcttgcgc
      481 tgccttttaa gtgttcttca ttttgagaaa atacaaaagc aggtttatta aaatgtttag
      541 ctaaacgact tgccacaatc cctaaaacac cttcatgcca atttaaaccc gataccacaa
      601 tacaagaatc gttttcatcg atttgattta aactatcttc aaaaagctgt ttttcttcat
      661 ctttacgact ttcattaaaa ctaacaattt gctctagata ttctaaagct ttattaaaat
      721 ctttagtgtg taaaaattca taagaaatac ttgcatcatc cattcttcca gcactattta
      781 taagcggagc aattaaaaat cctatattat caagagcaaa tttatccttt tgataataat
      841 gcttaatagc cctaaaagca gcccttttag atttgttaat atgatctata ccacgcctta
      901 ctaaagcacg atttaaatct ctaagttcca tcatatctgc aacaattgca atcgccaaaa
      961 gttctaaaaa tttacacatg tcatatttaa gcttgcacac ctcttttaaa gccgctatca
     1021 aataccatgc gacttgagct ccacaaattt caatttctgg aaaatcacaa tctttttgct
     1081 ttggattgat aatggcaaaa gcatcaggta aaacatcttg aggcatatga tgatcagtga
     1141 taatcaaatc tatatttttt tctttacaga gtttggctgc ttcaagagca gctattccat
     1201 tatctactgt tattattaaa tttacatcaa gttcgttgat gatctcagca tttaatccat
     1261 atccatcttt aaaacgattc ggaattctta taatataatc aaaacctata tcatcgaaaa
     1321 attctgccat aataacacaa gaaatgattc catcaacatc ataatctcct actatggcga
     1381 ctttctcatt tttttctaca gcttctttga tgcgattagc tgctttatat gcatccttta
     1441 aacagcatgg caaaggcaga tcacaaagtt tggtatgcaa atctttttca aagcgtgaag
     1501 ctaaaatttt tttaatttca tttttattaa ttatcttcat agtttatagc tgccttgata
     1561 aaactgcaaa tcacaggatt aacatgctca agtcttgatg taaattctgg atgaaactgt
     1621 acagccaaga aaaaaggatg acagttaagc tcaactgctt caatcaatcc tttgctttca
     1681 ccacttacaa tcaaaccgtg tttttcaaaa tctgctctat attttggatt tgcttcatag
     1741 cgatgacgat ggcgttcttt tacactcttt acttcattat aaaccttagc caaaagggat
     1801 ttttccttga tatcacattt ataagcccct aaacgcatag ttccacctaa aggagttttt
     1861 gcagtacgaa tttgtttttc tccatttgta tccataaatt catcaatcaa ataaaccaca
     1921 ggattttggc atttttcatt aaattcactt gaatttgtat ctttaagttt taatacattt
     1981 ctagcaaatt ccaccaaagc aagctgcata cctaaacaaa ttcctaaaaa aggaatttta
     2041 ttttctcttg cgtattgaat ggcttttatc ttaccttcta caccacgata tccaaatccc
     2101 ccagcaacca aaattccact cacatcttta aatacttcag cactttccat attttcaagt
     2161 ttttcactat ctacccattt taactccact ttagtatcta gggctgcacc tgcgtgtata
     2221 atagcttcag taaggctttt ataactttct tttaaatcca catatttgcc tacaaaagcg
     2281 attttaactt cattgcttgg agctataact ctttttacca aagagtccca attttccata
     2341 ttaggtttta aatttttcaa atccaaaatt tcagcaatag ggcttaaaat atcttgcttt
     2401 aaaaaattaa gtggaatttg ataaatacta gccgcatcaa cactttctat cacgcaattt
     2461 ttttccaccc cgcaagaaat agcaatttta tcttttaaat ctctatcaag agctttttca
     2521 ctacgacaaa taatcatatc aggactaatg cctatgcgtc ttaactcgcc tacactatgt
     2581 tgagttggct ttgtttttaa ttcccctgca gccttaataa aaggtactag agtaagatga
     2641 atattcatag cattattttt acccacttcc aaacgcaaag cacgaatagc ttctaaaaaa
     2701 ggcaagcctt ctatatcccc aacagttccg cctatttcaa cgataagtat atctttacct
     2761 tctcctgctt ttttaatgcg atctttgatt tctcctacta tatgagggat aacttgaatg
     2821 gttttgccaa gatattctcc acgcctttct ttttcaatca cactttgata aacccgtcct
     2881 gtagtgaagt tattatcttg agataaactc tcatccaaaa aacgctcata atgccccaaa
     2941 tcaagatccg tttctgctcc atcatcagtt acaaaaacct ctccatgctc aaaaggactc
     3001 atagtgcctg gatcaacatt gatataagga tcagctttta aaatactcac tttaagccct
     3061 gaatttttta aaagtgttgc gatagaagca gcggctatcc ctttacccaa agaacttaaa
     3121 actccacctg ttacaaaaat atattttgtt tgtttcattg ataataagcc ttattttttt
     3181 atctaattat agcttgataa aactttttat ttcattagaa ttttaagtaa aaaatgcaag
     3241 aattacaaaa aatattttta tcaaaaaagg aataagcatg caaatcactt tactttttca
     3301 cactccatta tctgtttgtt ctcatgcaac aagaacttgt tggcaaagct ttgaaaaagg
     3361 cgattgcggt ggcgaaaaag ataaagaact tatcgatcgc gtgggcaaca aattcaaaca
     3421 cgcttcaacc ttagaacatc taaactatac tttttatata caaggaattt caagagcttg
     3481 cttacaagaa gttgcaagac accgtcacac tagtcctagt gtaaaaagca cgcgttatac
     3541 cttaaaagaa cttcgcaatg aagctgaatt taaaatagga gattttgaaa atgcaagccg
     3601 ttatcttgtg ctttgtggta atgaagaggt tgataacgca agcattaaag ccttagaaaa
     3661 tttacgcact attttacaaa aaagcattag tctagatata gccaaatact gcttaccaga
     3721 aagctataaa actgaactta cactaacgat taatgcaaga agtttgcaga atttcatttc
     3781 tttgcgtagt tcaaaatcag ctctttggga gattagaaat ttagcaaatg ctttatttga
     3841 agccttacca caagaacaca aatttatatt tgaacattgc ctacataaag atatagaata
     3901 aatcatacta attttatctt atttaaaata tttttatgtt accatttata aaatcaagct
     3961 ttatgcaagt atattttcat ataccttgtg cttgattata gtttcttata aggacttttt
     4021 atggataaac aattttttca agattttcta atgctttcac aagctcatac tatagctact
     4081 cttactatgc tttgtgttgt tttttacgca ttaaaaaaaa tgcgggatat aaaaatcaat
     4141 ttttctcttc gcatgctatt tgcgctttta atgggtttgg ggtttggttt tgttttgcaa
     4201 tatttggcaa attttccaga tgctgaagaa gcaagtaata ttctttggta tagtgaaaca
     4261 aaacattggt ttgcatttgt aagttctgtt tttgtagctt ttataaaaat gctagttgtt
     4321 cctcttgtaa gcatttgcat tataaaagta attatagaaa ttgataaaaa tatcaaaata
     4381 tcctccttgc ttggaataag tcttttttgg atactcttta gcacagccat agctgcaacc
     4441 ttgggtatat ttttaggtta tagttttgat ttaggaagta attttgccat acatgaagga
     4501 gataaacaaa ttcgcgaaat tcaaactttt tcaaatatta tactagggct aatacctagc
     4561 aacatcatta cagctattaa taaagaaaat attatagcta ttgtcatttt ttcctttttt
     4621 ataggaatta gtgctaaaaa aatttctaaa aaagaagagt gtgaacaagc ctttaaaagt
     4681 tttcataatt ttatcctaac cttttataat attatgatga acatgactgc tacagtgatt
     4741 agatttatgc cttatgctgt agtttgtatg atggctaatg tgcttttaag caatggtttt
     4801 gaagctatca aaacagctgg actttttata atgcttattt atatagctat gttaataatg
     4861 ttcggggtgc attttttact tcttgcttca caagggctaa accctataaa atatgcaaaa
     4921 aaagcatttc ctgtatggtt atttgcattt agctcaagat cttctttggg cactttgcct
     4981 atgactactt caactttgca aaataaattt ggagttaatt cagctatagc taattttgta
     5041 gcatctatag gtacaacaac aggacttaat ggttgtgcgg gatattttcc agctttagcg
     5101 gcagtttttg tagcttttgc tacacataca catattgatt ttacatttgc tttaatgata
     5161 gttttggtag ctgttattgg atccttgggt atagctggag tacctggaag tgcaactatg
     5221 gcagcttcta ttatgctagc agggattgga tttggtaata attttgtcat gttaagtttg
     5281 attttagcta tagatcctat tatagatatg gcaagaacag caagtaatgt ctcaggagct
     5341 atgacttcgg cactttgtac tgcaaaaaat ctaaaagccc tagataaaga aatttacaat
     5401 tcttaatctc ttaaaaccca atatttttca ttgggtttta gtatttattg gcaaccttca
     5461 cattctatgc tacgatctgc aacattgact ttttcactat cagggctttc gcttcttaga
     5521 taataagtag attttactcc aagctcccaa gcgagttgat aaatttcatt taaatatccc
     5581 ccacttgctt tatcaagcga taaaaagata tttaaactct gcccttgatc gatccattta
     5641 ccacgcacag cagcagcctt tacaagaatt ttttgatcaa gttcgtaggc tggagtatag
     5701 tattgccaag tatcaaggct taaatttggc acaacaacag gtatcatacc acttaaattt
     5761 tgttcaaacc actttctttt gtaaacaggt tctatagtct gcgtagtacc caccaaaata
     5821 gaaatagaag aagtaggtgc aatggccatc aaataaccat ttctcatacc atctttttta
     5881 actttttctc taagtttaac ccagtcgcat tcactttgat caaataagcc ctctcttaaa
     5941 gttaaagctt tagccttagg acttgctaca tcaataggaa aaatcccctt gctccaattt
     6001 gatccttcaa aatcttcata agaacctttt tcaagagcca aatttgaact cgcattaata
     6061 gcctcaaagc taatttgttc cataatctca tcgattttat ttaaatgctc atcgcttccc
     6121 caataaatct tagcctcagc aagcatttgt gcctcaccca tgactccaag acctatggcg
     6181 cgagatttta aatttgtatc ttttactttt ctatgaggat aaaaatttaa atctatcaca
     6241 ttatcaagca tacgaatagc cgttggcaca acacgctcta tatcttcttt agtatacact
     6301 ttgctaagat ttatacttgc taaattacaa acggctgttt ttccatcatt tttatatttt
     6361 tccactatat aaactttatt accatcaata ctatctaaag ttgagatttt tttggctggt
     6421 ttttcatatc ccccatcgat cacaactttt tgttcttcat caaaatgaag ctcatctcca
     6481 ttttcaaaaa ctactttgat ttgataataa tttggctcgg tattttgaaa aatttcagta
     6541 cataaatttg aacttctaat aattcctaca tgagcatttg gatttgctct gttagcacta
     6601 tctttaaagc ataaaaatgg caagcctgtt tcaaaataat ttagcaaaat tttcttccaa
     6661 agctctttag cttctacgat ttctttggta atgctttcat ctttttcata ttcttcatag
     6721 cgtttttcaa aagcctcgcc atataaatca cacaaatccg ctgtatctgc aggatcaaaa
     6781 agagtccatt tatcattagc tcttactctt ttcataaaaa gatcattgat ccataaagca
     6841 gggaaaagtt catgagcacg gcgtctttct tcgcctgaat ttttacgcaa atcgataaaa
     6901 tcacttatat ccatgtgcca aggttctata taaacggcta tagccccttt tctggttcct
     6961 agttgatcta ctgccacggc aatatcatta gtaattttca agaaaggtat aatccctcct
     7021 gcggcatttt tatgcccatc tatgcttcca cccatagcac gcactttaga ccaatcccaa
     7081 cctataccac caccaaattt agaaagtaaa gccatttctt gataagaatc aaaaatacct
     7141 tcaatattat caggggttga tcctatataa caagagctaa gctgatggcg tgttgttctt
     7201 gcattagata aagtcggagt tgcaagcatg agttcaaatt tagaaataag atcgtaaaat
     7261 ttcttcgccc attcttgagg attaaattca ttctgcgcta aaaacatcgc aatggccata
     7321 aacatttgct gaggaagttc tataggcata cctttactat ctttaatcaa gtatctatca
     7381 tataaagttt taataccaag ataagtaaat tgcatatcgc gttcaggttt aatataagca
     7441 tttaaatcat ctaaatcata tttttcttta agaccaagta aaattcttcc ttctttttca
     7501 cctttttcaa aatactcaca caaatgatta tagcgattca taccattaac ttttttatat
     7561 aaatcaaata aaaaaagtct agctgcaaca aaggtccaat ttggacaatc aatatctatc
     7621 ttatctactg cagttttaat taaagttttt tgaatttctt cagttgaaat tccatcgcga
     7681 aattgaatct ttgcatcgag ttcaagttcg cttaaattca caccctctaa atcttttaca
     7741 gcatcagagg tgcatttttt gatcttagaa acatccaatt cttctgtacg accatttctt
     7801 ttaataactt tcattgcctt ccttgctttt tatttaaatg ttcttttaaa aattgcatca
     7861 acattttttg tatagtagtt ataatcgaaa cattttctta catcctcttc gctcaaactt
     7921 tttcttaaat cttcatcgct taaaagcgct aacaaaaaca aactttcatt tttttcattg
     7981 atagcagcct tgccattttg caaatctgcc caaactttca tagcgtttct ttgaactatt
     8041 ttataagctt cttcacgact aatgccttta aatggaagct ctaaaagcac cctccctgaa
     8101 aatacaagcc cgcctgtaag atttaaattt ttcatcatat tttcaggata aactaaaagc
     8161 ttatcaatca aatttgtaag acgcataagc ataaaatcag ccgtgataaa agcatcaggc
     8221 aaaataaatc tttcaacact agaatgagat atatctcttt catgccaaag tgcaacattt
     8281 tctaaagctg gagttacaaa agatctaagc acacgacaaa gccctgtgat attttcactt
     8341 aaaacaggat ttcttttatg tggcatagct gaacttcctt tttgtcctac actaaaatac
     8401 tcttcagcct cataaacttc agttctttga aaatgtctta tcgctacagc gatttgctca
     8461 caacttgaag ctaaaattgc aatagcagaa ataacttgag cataacgatc tctttggatc
     8521 acttgatttg aaacaggggc agctttaaga cctaaatttt tacaaacttc ttcttcaaat
     8581 tctaaaggag catgagcaaa atttcccatt gcaccactga tttttccata gcttaccact
     8641 tcttttgcat gttctaaaag ctcttttgca tgcaaaattt catcatacca aatagctaac
     8701 actaaaccaa aagtgatagg ctctccatga attccatgac ttcttcctac cattaaggta
     8761 tttttatgct ccaaagcacg ctttttgatc acttctaaaa gcaaagaaac atcttctaaa
     8821 ataagctcca aactctcttt tatctgtaaa gcaacagccg tatctataca atcagaactt
     8881 gtcattgcat aatgcacaaa acgactctct tctcccaaac tttcacttac acttgtaaga
     8941 aaagcgataa catcgtgttt tgtggttttt tctatttcgt ctattcttgc aatatcaaat
     9001 tttgcatttt taagaatttt ttcgcagtct gtgtcattaa tgagaccgag tttattccaa
     9061 gcttttacag cggctaattc tacttttaac cacgcatcgt attttgcttg catgtcccat
     9121 tttttagcca tgatttctct gctatatctt tcaaccatct ttgaaacctt tttagctata
     9181 attttatatt ttaaaaaaca gaaattatat caaattatcc taagaaagtt attaaatggc
     9241 ttacataaaa ataaaactct caaataatgg aaaaaaggca tttcaagtcc ttatggaaaa
     9301 tttaaaaatt agcataaatg aagcacaaaa actcatagac aaaaaaagac ttttttgtga
     9361 tggaatttta gtagaagaaa agaatgaaat tttaaatggt ttagtagagc ttatagtcta
     9421 tgaaaacaat cccaaaggag tagaaattgt ctttgaaaat gaagactttg ccatacttga
     9481 aaaagaaagt gggatcttaa gtcatccaaa tggtagacat tgtaaataca gtcttagtga
     9541 tgaaatttgg catctttggg gaaaagaagc ttgcgtagca cacagacttg ataaagaaac
     9601 gagcggactt atacttgtag ccaaaaataa aaaagctcaa attgatctta aagctttgtt
     9661 tgaaaaaaaa ctggttcaaa aagaatacct tgctctagct aacggaaaaa tagaagaaaa
     9721 ttttataatt gataaagcca taaatttagc caaaaactac gatgatgtaa aaacaaggat
     9781 gcaaatttgt aaggaaggaa aacaagctat cactgagttt gaaattttag aatactttcc
     9841 taaaatcaac gctactcttt tactctgcaa acccttaaca ggcagacaac accaaataag
     9901 agtgcattta cactataaaa accataccat tttaggcgat ccactttatg ggcttagcaa
     9961 agaacaaatc gaaagtattt tagatgaaaa attaaccccc aaagaacgct taaaacttac
    10021 aggtgccttg cgtttgtgtt tgcattctta tcgtttgaaa tttcaatata aaaatcaaaa
    10081 ttttaatatc aactcaaaaa taaacataaa agaaattttc aacaattcta taaaataaaa
    10141 tgatgtttca ctacgctaca atcaatcact tttttaccaa attttaaaac aaaaaaataa
    10201 ttcttgctaa aactttaagt ataattaaat aaaaaagcga gattttccaa atgaaatttg
    10261 ttaattttat acagggtcaa aaacccaatc taggagtact aaattctagt ggaaaaattg
    10321 taagttttga tgatcttggc attgaaacta acgatatgaa tgaatttatt atccattttg
    10381 ataaatttaa acacaaactt acagacttgg attctaaaat agcctatgaa attccacaag
    10441 aaaattatct agcccctatt atagaacctc gtcaagatat tatatgtctt gggattaatt
    10501 ttttagatca tgccaaagaa tctgccaaat ttaagggtga aaaatttaaa gaaagagaat
    10561 atcctgtata ttttggaaaa cgttgcaatc aagctacgcc accttttggc gatatacctt
    10621 tacatgcaga tgtaacttct cagcttgatt atgaatgtga gcttgcattt attttaagta
    10681 aagatgctta taaaatcaaa gctaaagatg caaaagatta tatctttggc tatactatta
    10741 tcaatgaaat ttcagctcgc gaacttcaaa aacgccacaa acaattctac cgagcaaaaa
    10801 gtcttgaagg tagcactata atgggacctt atatcacaag cgtagatgaa atttcttatc
    10861 ctcctaaact ccaacttcaa agctatgtca atgatgaact acgccaaaac tctaacactc
    10921 aattgtttat ttttgatatt gcttatgtct tagaagaact tagtgcaggc atgcttttaa
    10981 aagctggaag tattatatct atgggaactc ctagtggagt aggtatgggg ttaaatccac
    11041 ctactttttt aaaatcagga gataaagtac gttgcgttat agaaaattta ggagaacttt
    11101 gtaataaaat aaaaaatatc aattattaaa taatttacta aaattatact ataatggcat
    11161 tttaaaaact taaattaagg cagaaattta tcatgaaaaa aataataatg attttatgtt
    11221 tatcttatgc aaatatagtc tttgcagtag atatgataac ccctattcca aattccatct
    11281 cttatgataa agaaaaagct gaacttggaa aaagtcttta tatggataaa agtttatcta
    11341 aagatggaaa agtttcgtgc aatacttgcc ataggcttga tcgacacggt gttgatgggc
    11401 ttgaattttc aataggagtt gataatcaac tcgataaacc ctttaacact cctacaacct
    11461 ttaattctgt gtttaatttt gtgcaatttt ggaatggcag agctaaagat ttaacagaac
    11521 aagctatggg accttttttc aatccaaaag aaatggggct aagtcctgaa cttcttttac
    11581 aaaaagttaa ttcaaatgaa aattatgtaa aaacttttaa aaaactttat ggagaagtta
    11641 cagtagaaaa catagctctt gcagttgctg aatttgaaaa aaccttaatc accccaaatt
    11701 ctccttttga tcgctatctt agcggggatc aaaatgctat ttcaactcaa gctaaaaaag
    11761 gttacgaaga ttttaaagct aatggctgca tctcttgtca tcaaggtcaa aatataggtg
    11821 ggaatatgtt tcaaaaaatc ggtatttttg aagaataccc aaaccaagaa gatttagggc
    11881 gctatgaaat cacaaaaaga gaagctgata aaatggtatt taaagttcct agtcttagaa
    11941 atatagccaa aaccgcacct tattttcatg atggatctat acctacttta gatgcttgtg
    12001 ttcagtttat ggcttactat caactaggaa aatttttaga tcaagaaaca gttgacaata
    12061 tagttgcatt cttagaaagc ttaacaggag aatatcatga caaataaaaa aagttcattt
    12121 ttgataaaat ttattatttt atctacacta gttttagctt tcattcttgt tttattggct
    12181 attattttta ataactattc ttcatctaaa gataataaag aattgataaa catagttcaa
    12241 caactagaaa tttcagatga aaaaatcaat tctgtttttc aaaatagttt taattttatc
    12301 aactacgatc caagtgttca agcgataaaa aaaatgcaag aaaactttac aaaacttaaa
    12361 acttttggga ttgacataaa caaagcagaa gaaattttta atgccaaact aatccagctt
    12421 aattatttta aatccgcaaa ttccatagca gtaaattcaa aactttattt atttgaacta
    12481 gctaaaaatt attttgaaga attggaacaa aaccatgaaa caaataaaaa caactataaa
    12541 acaatgagtt ctatgttaag cgttctttca actgaaaata ttttacaaaa aacaacacta
    12601 aatcaactca acaatcttat gaaagaaatc aaaaatgata caaaaagtga aaatttacaa
    12661 ctttttttaa aacactataa catgattgta aagcaaattt ctattatgca agataattct
    12721 tctatttatg agaataattc tctcatgaaa gagttaaaac aacttaacac ttttacccaa
    12781 aatactatag aacaatctaa tttatttaaa ttttatatcg ctttagcagt atttggaatt
    12841 actcttgtat tatttgtatt ttttatttta ttaacactaa aaaaagtcat catgccaatt
    12901 catactttag aaaaactaag cgctaattta gctagcaaag aagccaatct acactctcgt
    12961 ttaaatatag atccaaaaag tgagcttgga caaagtgctc aatatattaa ttcatttatt
    13021 tccaccgttc aaaactcgat catagaagcc atagaaaatg ctaaatcaag tcatcaaaat
    13081 tcacaaaaac tcaaaaacaa ttctatgatg cttgaaaaca gttctaattc tcaacatgaa
    13141 caaattcaag gagttaaaga aatcactcat gttttagatg atcatatcaa tcttgcggga
    13201 aatttagcac aagaaagtat agaaaatatg caagatatgc acatactaat ggataaagta
    13261 gaacttactc tatctgaact tgtaaatttg ataaatgaaa acaatgaaaa agaacaaaat
    13321 gtagtagcca atatggatag tctaacccaa agtgcggata atattataga aatcacaaat
    13381 tccattaaag atatagctga tcaaactaat ttacttgctc taaatgcagc tatcgaagct
    13441 gcaagagcag gcgaacatgg gcgtggattt gctgttgtag ccgatgaagt tggacaactt
    13501 gctgataaaa caagcaaatc tcttttaaat atcaatgcta ctgttaatac tatagtccaa
    13561 caaatcaatg acaacaaagc cttaatggat cttatccatg attctatgaa agaaacctct
    13621 tcaaaaacca atgatttaca acaagaactt gtaaattcta tgcataaatt ggaaagctct
    13681 atagaatcaa cccaaaccat gaaagataaa agcatggaag taaaagataa aatgcttatc
    13741 ctaggaacaa atatagacaa agttaacgaa cttgcaaatt ctgttaaaga tttatcatgc
    13801 gaaatcaata atatctctca aaatgttcta aatggtgcct ctaaactctc cgaaaaatta
    13861 agtagctttc agtaactttt ttcacgttaa tttaacttaa cgtgaaattt caataaaaat
    13921 tttattttta atttatgttt ttcaagtaaa attagcagtt tttatttcaa aggagatgct
    13981 atggagtttc ttgaactttt attagtttta atcgccttga tactgattat caaaaaacca
    14041 gaaaaagaaa atttggcttt tggtttggta atggtagctt ggcttttaat ggtttttttc
    14101 tatgttggcc acaaaacagg cgcactatta acaataatga atctgtaagg aagggctaaa
    14161 tgaacgaaat caataaaaca aaaaatttct acacactaat gtgtttagca ggctttttga
    14221 ttatactctt gcctgtaggt attgcaaatt tgatatttgg ttatatgttg ggcgatagtc
    14281 cttgcacgct ttgctgggga caaagagaag caatgatctt tatcggtgta atggcgcttt
    14341 tcattgttcg ttatggtatg aaaggtaaat accttgctgc tcttttaatc atgacagcag
    14401 taggacttta tcaatctttt gctcactatg gtaatcacgc tcatagagat ttagatcaag
    14461 gttttggttt agcagttttt ggtatccata cttatttttg ggctgaagta gtattttggg
    14521 ctgttgtatt gctcttaggt gtgatttttg cttttgcccc taaatttaat gcttttgaag
    14581 ctgaactaaa tggagaaaag tttagaaaat atactaaatt tagctttgca gcagttttaa
    14641 tcagtgctat catcgtagca tcaaatgttt tccaagcctt tgttagcaca ggtattcctc
    14701 cttatgtagg acaaggcgat cctgtaagat ttagtttaaa tccaaaatac atcatttgga
    14761 gtaaagaagg ttggaatggt ttatggcaaa atatttcttt cttaggaaaa cgcgatgtta
    14821 aagctcctga ttatgctttt gcacctgcaa gtgaaaaact tggcataaaa tttgataatg
    14881 atatcaacaa tgctccattt gcaaaaatca atgatgagct taaaatcaca aatgaacaaa
    14941 ccataaattt tgacaaagcc atcaatactc ttgattatat caataacgaa tttgtagcaa
    15001 gttctaaatg ggatgtagtt ttcttagata ataattttag cgttaaagaa ggttttgaac
    15061 ttgatcctta tttttcagct tctatcgatc caatcatcgg tatcatacct tatatgaacg
    15121 ataaattcat tcttatgggc tcaaacaaat ctttcttaag atttgcaaaa aatcctaatg
    15181 caagtgaaga agatatcgct aaacaatacg ctgactttgt aaaaggcaat gataaattta
    15241 aaggtcaagg cgaaagttta ggtcgcggaa gacttgatac cgtaagagca aaatttaacc
    15301 atgtagcaag tatgactaca gatggaaatt atctttatct tgcaactgtt ccaaacaaca
    15361 aagacgctaa aacttttgta atctctaaag tttctttaaa agatcgtgtt ctttcaggag
    15421 aatttactcc aaaagcaaat cttaaagaag gtaaaacttt aggcgatctt tatgtaactt
    15481 ctatgacttt taaagatggg gaaatttatg cacttagcaa aaatcacaat gtgattgccg
    15541 taattgatcc agtcaaagaa gaagtagtga aaactatcgc tttcccaagc tctatcacta
    15601 atgctagaag cattttcttt aaagatggaa aaatcaatat tctttcttat caagatggag
    15661 caaacaagct ttatacttta aactaagctt taagtcctag tgaaaactag gacttatatt
    15721 taatcttatc tttaaatcct gctttttcaa aacctcttaa acgaagcaaa caactatcac
    15781 actccccaca agcttcatct tcactctcat aacaagacca agtaagttct aaaggtacat
    15841 tttcttttaa ggctagttct acaattttag ctttgtttag tctaacaagc ggagttttta
    15901 tacaaacttt gaaattctta ctcgtacctt cattgataaa ttcttgtgcc ttttgtataa
    15961 actcatcagt acagtcggga taaccactgc catcttcttc taccacccct ataaaaatac
    16021 tctcacaatt ttccttttca gccaaagatc ctgctatact taagaaaatt ccattgcgaa
    16081 aaggcacata agtgataggt ggagtatcgc ttgtacaaag ctcattttta gggatgtcta
    16141 tacttttatc ggttaaggca ttgcccccta tatctttgat aaaactcaca tctaaaatat
    16201 aagatttttc tacttttaaa gccttgcaaa tttgcttaaa acattctttt tctttttctt
    16261 gagtgcgttg ttcatagtca aaatgcaaag cgatgatttc ataaccttct tttttggcca
    16321 gataagcaca caaagtacta tccataccgc cacttatgat acaaagtgct tttttactca
    16381 tttttatcct taaatttgct ataatttcac aattttaacg aaaattttta aatttaaatt
    16441 gcaaaaaagg caaaagcatg ataaacataa aactcataga acacattttt aaagccgctt
    16501 ctattagtcg ctggaatgat tatccaagaa tggcaaattt ggttgaactt gacaaacaag
    16561 ctcataaatt catcatcgca tattttatcg ctaaaatgga aaaagatgtg gatatgagag
    16621 tgattataga agggggaatt tttgagtttt taagtcgtgt tgtggtaact gatatacgcc
    16681 ctgatgtgta tcatgaaatc gtgcgtcaaa aaaaagctga agttaatgct tgggttttaa
    16741 gcaaaatcga acctatgata gaagatatag aagatgggga atttctaaag cgttttgaag
    16801 catatttaaa cggtaatgct tatgctaaag aaagacttat cttaaaagca gcttcatatt
    16861 ttgctacaag atgggaattt aacatagttt atcaaacctc agctttttta aatgatattg
    16921 atgagattaa aaacaaagtt gaagaagaat tagaagatta ctatgagctt ataggagcta
    16981 gaaaaatcgc tttaaatcaa aaaatagcca aaattattga tcttagcgga agacttcgct
    17041 ttcaaaaacg ttgggctcaa actccacgca taccagaaac cgcggtttta ggacatatgc
    17101 ttgtggtggc gattttagga tatttttact cactaaaaat caaggcttgc gataaaagac
    17161 ttgagaataa tttttattgt gctttgtttc atgatttgcc agagtcttta acacgtgata
    17221 ttatcagccc tgtaaaatac ggcattgatg gacttcatga tatcataaat gattatgaaa
    17281 tgaaacttat taatgaaaga attttaccct ttgtacctga gggtttaagg gctgagtttt
    17341 cttatatttt aggcattaga gaaggtagaa acggtgagtc aaattttgta aaaaatgagt
    17401 ttgaaaatcg cacttataaa aatgctaaaa tcgagctttg cagcggaagt ttaagctctt
    17461 ttaatgaaaa tgaatttggt gctatagatg gtaaggcgct taaatactgc gataaaattg
    17521 ctgcttatat agaagcagga cttagtataa gttatggtgt aaagtctaaa gaacttgaaa
    17581 gtggtttttt aggaatgcat gagtttttta aagaaaatcc taccatagat ggggtgaatt
    17641 tttttgaaat ttgtgaaagt ttaagagagt attttaaaat ttaaataaga tttttatact
    17701 actatt
//
LOCUS       DAPIWU010000024        17365 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.024, whole genome shotgun sequence.
ACCESSION   DAPIWU010000024 DAPIWU010000000
VERSION     DAPIWU010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17365
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.024"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            106..1170
                     /gene="mqnE"
                     /locus_tag="RJ285_000640"
     CDS             106..1170
                     /gene="mqnE"
                     /locus_tag="RJ285_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HDV7383439.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1180..2499
                     /locus_tag="RJ285_000641"
     CDS             1180..2499
                     /locus_tag="RJ285_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDV7383440.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMS
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAAASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2513..2956
                     /locus_tag="RJ285_000642"
     CDS             2513..2956
                     /locus_tag="RJ285_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HDV7383441.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            3001..3699
                     /locus_tag="RJ285_000643"
     CDS             3001..3699
                     /locus_tag="RJ285_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDV7383442.1"
                     /translation="MRIKFISFILIFFAIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRNFFDNLLVPLRFVGNILQFKFEE
                     AGEEFKRFTTNTIMGFGGLMDMASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            3709..4278
                     /locus_tag="RJ285_000644"
     CDS             3709..4278
                     /locus_tag="RJ285_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDV7383443.1"
                     /translation="MKKIFLILALFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLVYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            4278..6749
                     /locus_tag="RJ285_000645"
     CDS             4278..6749
                     /locus_tag="RJ285_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HDV7383444.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMITYIKSDLVLYGVSLVFLLGFALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYIALVLIITLSVVVHLITHFIENTQNHPK
                     ATVERIVLETLLAKANPSLYAIVTTMIGFFSLMLSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSNTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSILSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(6780..7382)
                     /gene="rdgB"
                     /locus_tag="RJ285_000646"
     CDS             complement(6780..7382)
                     /gene="rdgB"
                     /locus_tag="RJ285_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDV7383445.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            7549..8844
                     /locus_tag="RJ285_000647"
     CDS             7549..8844
                     /locus_tag="RJ285_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7383446.1"
                     /translation="MLNYVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDTLNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTSKEELEGKL"
     gene            8841..9650
                     /locus_tag="RJ285_000648"
     CDS             8841..9650
                     /locus_tag="RJ285_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDV7383447.1"
                     /translation="MKKILFLFCSFFLAFAKPSLEIPKLSKQAKQNFILENVKFNYNG
                     TIYKIFIAKNKNENSNYKYKIIYLLDGNAFFPLFLNLFNTPVKENLLIIGIGYDNNLA
                     FDTQKRTKDYTPTTNLNKQGGGSKEFRNFLITQLIPYINKMYPIDFSHQILFGHSFGG
                     LFAIDTLLYDSKIFSHYFIISPSLWWDNSEFLPNIIKLQTCPKIYIGLGSLETNSSII
                     KGVAKLNAQKLSEKISKETNCKTHFKLFKNETHGSVISKAMLWMKKLLDLN"
     gene            complement(9643..11304)
                     /locus_tag="RJ285_000649"
     CDS             complement(9643..11304)
                     /locus_tag="RJ285_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7383448.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLILADSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAENLSVVRK
                     DFTRQSGCYNLLNFENLEALLEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIMLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFSCIECGKE
                     FATKKAVEKIANLMKPKFGNDEDKIKTLYCCADCKAKVMIKAMIN"
     gene            11382..12704
                     /locus_tag="RJ285_000650"
     CDS             11382..12704
                     /locus_tag="RJ285_000650"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDV7383449.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELIEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEANIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEEKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            12701..14506
                     /gene="selB"
                     /locus_tag="RJ285_000651"
     CDS             12701..14506
                     /gene="selB"
                     /locus_tag="RJ285_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDV7383450.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFIVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENYEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQLYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            14555..15265
                     /locus_tag="RJ285_000652"
     CDS             14555..15265
                     /locus_tag="RJ285_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDV7383451.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDNELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            15271..15801
                     /locus_tag="RJ285_000653"
     CDS             15271..15801
                     /locus_tag="RJ285_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383452.1"
                     /translation="MSKITLILSFFITLFMSACTNTTFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLKNKIINQIVSFFYF"
     gene            complement(15847..16338)
                     /gene="fldA"
                     /locus_tag="RJ285_000654"
     CDS             complement(15847..16338)
                     /gene="fldA"
                     /locus_tag="RJ285_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDV7383453.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWIEQIKP
                     YFA"
     gene            complement(16338..17033)
                     /locus_tag="RJ285_000655"
     CDS             complement(16338..17033)
                     /locus_tag="RJ285_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383454.1"
                     /translation="MLFGFDDKREFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     SYAKNTKSLKMIFGNFLHDIMHVSFGKIQNINIKLNAYAFYFQKRKSLIFNTKISKNV
                     DFLRLLRIYLYGICFDVQILFSSYVYDKISFQNNEKNIDQDGDLIIIDKKFAILPLCK
                     EINTYNLKIENEIHELLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            complement(17036..17350)
                     /locus_tag="RJ285_000656"
     CDS             complement(17036..17350)
                     /locus_tag="RJ285_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HDV7383455.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
BASE COUNT         6220 a         2610 c         2523 g         6012 t
ORIGIN      
        1 aatcttaaca aaaatatctt ttattttggc tttttctata aactcttttt cagtaagcaa
       61 aaattataat gctttattta aaaacagcaa aagagtaaaa ttaaaatgaa aaatttaatc
      121 accaaactag aaaatgaaga aagattaaac caagaagaag ccaatgcact ttgggatcta
      181 gatcttttta ccttaggcaa atacgctcac aaaaaacgca ctaaacttca tggaaaaaaa
      241 gtctatttta atatcaatcg ccatatcaac ccaactaata tctgtgcaga cacctgtaaa
      301 ttttgcgcct tttcagcgca ccgaaaaaat cctaatcctt atttgatgac tcatgaagaa
      361 atcatgaaaa tcgtcgatga aactgtaaaa cgagaaacca aagaagtgca tatcgtttca
      421 gctcacaaca aagatacaac ttggcaatgg tatttagaaa tttttaaaat gataaaagaa
      481 aaatatccta atcttcatgt aaaagctatg actgctgctg aaattgattt tttacatcgt
      541 cgttttaaaa tgagttatga agaagtgata gaaaaaatgc ttgaatacgg cgttgattcc
      601 atgccaggcg gtggagctga aatttttgat gaagaagtgc gtaagaaaat ttgtcatgga
      661 aaagttagca gtgaaaattg gcttaaaatt cataaacttt ggcatgaaaa aagcaagcaa
      721 agtaatgcta ccatgctttt tggacatata gaagaaagac atcacaggat cgatcatatg
      781 ttaagactgc gtgatcttca agatcaaacc ggtggattca atgcttttat ccctctagtt
      841 tggcaaaggg ataatagctt tatacaaact gataaaatca tggatagtga agaaatttta
      901 aaaaccattg ccatttctcg tttagtgctt gataatatca aaaatatcaa agcttactgg
      961 gcaacaatga ctttaaattt agccatggta gcacaagaat ttggagctaa tgatttagac
     1021 ggcactatag aaaaagaaag tatacaaagt gcaggtggtg caaagtccgc caaaggcaca
     1081 agtttaaaaa cttttatcga tatgataaaa acttcaaatc ttattcctgt agaacgcgat
     1141 agtttataca atgagctaaa aacctactaa ggagaaaaaa tgagcttttt taaactcaaa
     1201 gaaaacaata cgagttttaa aaccgaagtt atagcaggac ttactacttt tttagctatg
     1261 gtttacatta tccccgtaaa ttctagcata gtaggaaata caggaatgtc tatagaagct
     1321 ttaatcaccg caacagcttt aattacaata gttgcaagtg cttttaatgc tttttttgcc
     1381 aatactcctg tagctatgag tgtaggaatg ggtttaaatg cttattttac ctttgcggtt
     1441 tgtttaggtc aaaacatagc ttggcaaagt gccttaggag ctgtttttat ttcaagtatt
     1501 atttttctca tactttcttt tacgcatttt cgcctttggg taatccgcaa tatcccaaaa
     1561 gatttacgcc ttgcaatttg tgcgggcata ggttgtttta ttgcattttt aggcttaagt
     1621 caaatgggtg tgataatgca taataaagat accttagtca gcataggaaa tttcaaaagc
     1681 cctcatgtgc tttttggaat ttttactcta gctttaatca tctttttttg ggctataaaa
     1741 cttcgcggag cttttatttt gggggtatta gcaagctcta ttattgcttg gattttccat
     1801 ttagacaatg caagttttcc tgtgcaaatc ttttcttggc caaattttag catggaaaat
     1861 ggtttaggag ccatcttttt acaacttgat atcaaaagcg ccttaaatat tactatgata
     1921 cctataattc ttactttttt tatcactcaa ctttttgata gcataggaac tatcacaggt
     1981 gtgggtgaaa gaggaaagat ttttgatgat cccaaaaatg gagaaaaaaa actaagcaaa
     2041 accttaatgg cagatgcaac aggatcagcc ttaggagcta tgacaggcac ttctacagtt
     2101 acagcctttg ttgaaagcac tacaggggtt gaaagcggag gaagaactgg gcttacagct
     2161 ttagttgtag ctatttgttt tgcttttaca ctttttttac tgccactttt taaagccatt
     2221 cctgcaaacg caatataccc cgtacttgta atggttggaa ttttaatgtt tatggaagtt
     2281 aaaaatatag attttaaaga tagtgctata gctgcagcaa gcttttttac tatcatcatg
     2341 atgcctttta cttactccat caccacaggt tttgcttttg gttttctttc ttatttactt
     2401 gtaagaattt ttaaacgcga atgggataaa atcaatcttg gcattatagt tttaagttta
     2461 ttatctttgg gtaatttttt acttatggca ctacaataaa taaggatata taatgatatt
     2521 ttactcctat gaagaattta aagaagatgt aaaaattctt gctaaagaaa ttaaagaaga
     2581 ttttaaccct gatgcacttt tagctatagc gagagggggg atgagtttag gacactcttt
     2641 agcagtggct ttaaaaacgc gtcaactttt tgctttaaac tcaattcatt acgataatac
     2701 gaaaaaactt gatactattg aaatttttaa cattcccgat ttaagcaagc acaaaaaaat
     2761 tctactcatt gatgatatag tagatagtgg agaaagttta gcagaaataa aaaaagtttt
     2821 gcttgaaaaa tttcctcata tagaacttaa aattacaacc attttttaca aaaaaaccgc
     2881 tcttttagag cctgatttta aagtaaaaga agctactgaa tgggtggatt tttactggga
     2941 tataaatctt gattaaaaat ttgctataat tttactttta aaatttttag gagtttttgc
     3001 ttgagaataa aatttatatc ttttatttta attttttttg ctatttttgc ttttgctaaa
     3061 gaacaaaatt tagatgattt cgaacaagaa taccaaaact atcaagtaaa cgatccactt
     3121 tcaggatata acaaagctat gacaagtttt aatgtggctt tgtatgatta tggtttgcgt
     3181 cccgttctta agggctataa cactatcact cctgaattta taagattagg ggtaagaaat
     3241 ttctttgata atttacttgt tcctttgcgt tttgtaggca atattttgca gtttaaattt
     3301 gaagaagcgg gagaagaatt taaaagattt accaccaata ccattatggg ctttggtgga
     3361 cttatggata tggcatcaaa aatgggtctt aaaaaacatc ccgcggactt aggaaccgtt
     3421 ttggctcact ggggtgtagg aagcggtttt catattgtct tacctatact cggccctagt
     3481 aatcttagag atactcttgc tttacctgca acttggtatg caagttttac tgcttacatt
     3541 gatcctactt gggcaagtat agctataagt gcttatggat ttggtaatga acttagtttt
     3601 agacttgatg aaattgatga aatttatcac aacacgccta atttatatcc attcttgcgt
     3661 gatgcttacg agcaaagacg caatgaactt agcaaataaa ggaaaataat gaaaaaaata
     3721 tttttaatct tggctttatt ttttaatgct tttgccttac agctagatga aatttctagt
     3781 actatgcaaa aaaacattga tgcaagctta aaacttttac aagatagcaa agaagacaaa
     3841 aaacaagctg ctgatggaat ttttaaactt tttgatagca taatagatta taaactcatg
     3901 gcaaaactca gtctttcgaa aaattattct aaattaaatc caaaagaaca agaaaaattt
     3961 accacagcct ttgaagcaag tcttaaaaaa agttttaccg ataaactcag tctttataaa
     4021 gatcaggttt taaaggtcaa aaatggtgag ttaaaaaatg aaaaacgcta ttttttaacc
     4081 acttctatgg tagtagatgg ggaagaaaaa aatatcattt tcaaatttta caatgataat
     4141 aacaactggc ttgtttatga tgtggatgtt ttaggtgtga gtatagtaca aacttataga
     4201 tcacaatttg gagatatttt agccaaccaa ggctttgatg ccctacttca aaaacttgag
     4261 agtattgtca tagaataatg tttgcaaagc ttttaaagtt ttttatttct cgtccaaaaa
     4321 gtactttttt tggaaccttg tttatatgcc tgtttttaag cttttttgct tttaagctta
     4381 gcgtagatgc aagtgctgaa agtttacttt tagaagatga tgcagattta aaaactttta
     4441 gagaaatttc aaaacattat aaaagtgata attttttact tttagccttc aaaccctatg
     4501 atgaaaaacc tttttcaaat gaaaatttag ccaaattaaa aaaacttcat gaagaattag
     4561 aaaaggcccc tttagtagag cgcgttttta gcatcatcaa tgcccctttg cttcaaagtt
     4621 cacaaaatac ggatttaaaa gaactgttaa aaaatatccc aaacatagaa agccaagata
     4681 taaaccgcac aaaagcccga aatgaaattt taaatagtcc cttttataaa aataatatca
     4741 tctcaaaaga tggaaaagta acagggctta ttatttactt aaagcctgat acagtttata
     4801 atgatcttgt agaaaaacgc gatcttgcta ccgatgaaaa agaaaaagat caaattcgtc
     4861 ttgctataaa aaaacatcaa gacaagcaaa aagttatcac gaaacaaagt ctagatacta
     4921 ttaaaagcat agttcgaaat tatgaaaaaa ataaagatac gctctacctt ggtggcgtaa
     4981 gcatgatcgc tgatgatatg ataacttata taaaatctga tcttgtactc tatggtgttt
     5041 ctcttgtatt tttactagga tttgcacttt attatttttt ccgttcatgg cgctttgttt
     5101 ttttacctct ttttatttgt tttataagct taagtgcagc tagtggagtt tttgcacttt
     5161 taaattttca aatcacagtt atttcatcaa attacattgc tttggtttta attatcacct
     5221 taagtgtagt tgttcatttg atcacgcatt ttatcgaaaa tacccaaaat catcccaaag
     5281 ctacagttga gcgcatagtg cttgaaacct tactagccaa agcaaatcct agcctttatg
     5341 ccattgttac aacgatgata ggattttttt ctttaatgct ttcaaatatc gaacctatca
     5401 taaaacttgg tattatgatg agtataggta taggtttagc tcttatcttt agttatttat
     5461 ttttagcaag tatcttagtt cttttaaaac caaaaaacta tcataaaaaa gagtttaaat
     5521 ttaatctttt agccttttgt gctaaaaccg ctcttgatcc taaaaagcgt cgcatgattt
     5581 atggaatttc agttcttgct ataatcttag ctttaatagg catttcaaaa ctcagagttg
     5641 aaaattcttt tgtcaattat ttcaaagatg gcagtgaaat caaaaaagga cttttggtta
     5701 ttgataaaaa tctaggtgga accttgcctt tagaagtcat cattcgtttt ccaaataata
     5761 aaaacgatca aaatacaagc aatactcttg atagttttga aagcgaattt gaaaatttag
     5821 ccacacaaga aacttattgg tttgactcta aaaaaacacg cattgcaaaa aaagttcatg
     5881 aatttttaga aaataaagaa tttgtaggct cgattttaag tcttaatagt cttttaaccc
     5941 tagggaaaaa tatcaacgat ggaaaagagt tagatgattt tgctcttgcg tttttaaatg
     6001 agaatttacc tgctaaattt aaacaagact tgctttcacc ttttgtaagt atagagaata
     6061 acgagttaag atttagtatg cgtattgttg attctgatcc gaatttaaga cgtaatgaat
     6121 ttttaataga tcttaaaaaa cagctcaacg agcttgtaaa aaatgatgga gtagaagttc
     6181 aaatcacagg tataatggta ctttataaca atatgctcca aagtcttttt tcatcgcaat
     6241 ttgatactct tatatttgta attttagcta tttttatact ttttatcatt gtttttagag
     6301 atttaaaatt ttcagttgcg gctatattgg taaatgttat tcctttaagt gtggtttttg
     6361 ctcttatggg gcttttaggt attcctttgg atatgatgag tattactata gctgctattg
     6421 ctataggtat aggcgttgat gatgctatac attatattta tcgttttagg gaagaaatta
     6481 aaaacaaaag cctagaagaa gccattatga tttctcacct tagtataggt tcggcacttt
     6541 attatactac cattagcata gttttaggtt ttagtgttat gatgagtagc aattttattc
     6601 caacaattta ttttggaatt ttaaccgttt ttgtaatgat tttgctttta agtggaagtt
     6661 tgttcttatt gccaagcttt ttaatcacta tttattctaa gaaaaccaag tttccaaacc
     6721 aacataaaga gcatatatta aaacaataat agctatatat tttaaaaaat ttttcatttt
     6781 tatcctttgt ttaaaatctt taaaatgatt tttgcaagct ctaaggcttt aaaacgatga
     6841 gagatgttat tcttctcatc cacgctaagc tgggctaagg ttttatcaaa accctttgga
     6901 ataaaaagac tatcataacc aaaaccattt tcaccttttt ctgtatctat tacttttcca
     6961 tgcatggttc catgcgtact aaattccccc atcaaaccta ccatagcaat agcagcaaca
     7021 taatgcgcct tactttgttt aaaacctttt tttatcattt cattgacaag tttatcacgg
     7081 ttacttttat catcgccctt accgctaaat cgagcagaat aaattcctgg atttccttct
     7141 aaaacatcta cacaaatgcc actatcatca cttaaagcga taaaatcttt tttttgcttt
     7201 tcatccaaag cattaaaaac cgctcttgct ttaatcaagg cgttttcttt aaaagttttt
     7261 ccattttctt caatctcaaa aggcattaga acttcatcaa aagcataaat ttcaaaatct
     7321 tttaaaattt ctttaagttc taaaacttta tgtttattgc tcgtagctag gataatcttc
     7381 ataacaaaag ctccaaaata atatcaaaaa caaaaatatg attttataaa atttatcctt
     7441 gtgcgtagct tttaaatatc aaatgataaa acgatgttaa tcaatgctta atccatttca
     7501 tagtaaaatt atcctaattt aaatttcaaa tttaatagga aattgataat gctaaattat
     7561 gtcttaccct tatctttcat agttggaaca agattttttg ggctttttat agttttgcca
     7621 gttttaagtc tttatgcttt aaaacttgaa ggtgctaatg aatttttagt gggactttta
     7681 gttggtgttt acgccttaac ccaaatgatt ttacaaatgc cttttgggat tttaagtgat
     7741 aaaattggtc gtaaaaaaac catgctcatt ggactgatta tttttataat aggctcttta
     7801 atctgctctt ttgcggaaaa tatttacacc atgcttttag ggagaatgct ccaaggtgca
     7861 ggagctattg gagcagtagc tacggcaatg ataagtgatt ttatcacaga agaaaatcgt
     7921 ggtaaagcca tggcggtaat gggttctttt ataggactta gttttgcagc ctctatggtc
     7981 atttctcctc taatgagtgc aaaatggggt ttatctagcc tttttgatct tagtgcggct
     8041 ttgtctcttt tatgtataat tttactttat accgttgtac ctaaagaaaa taaaatcact
     8101 catgaaaatg aaaaaactcc tttttttcat cttattaaac aaaaaaattt agcccttatg
     8161 aatcttacta atttcatgca aaaaatgctt atgagtatag catttttaag tattcctatt
     8221 attctagtaa aacatttagg ctttgcttct gataaacttt ggattgttta tagcgcttct
     8281 atggtagcag gttttatcgc tatgggcttt gctggaagtt taggcgaaaa aagaggttta
     8341 gctaaacaaa ttttactctt aggaattgtt tttttcatac tttcttatct tttttttgct
     8401 tttagtaatt ctattgattt ttttatcata gcagttgtga ttttttttat aggttttaat
     8461 ttacacgaac ctattatgca aagttgtgca tcaaaatttt gtaaagttca tgaaaaaggt
     8521 gcagcattag ggttatttaa tgcttttgga tatggtggaa gttttatagg tggtattatc
     8581 ggagggatat ttttacatct agatacctta aatcttttag ctattatttt agtaatttta
     8641 gctctaattt ggcttgtggc attatttttc ttaaaaaatc cagctgattt taaaaacctt
     8701 tatctacctt tagaaacgcc tttaaatttc agtacttttg gtgaaaattt aggggttgta
     8761 gatatttata aaaactctaa aaatcttgtt gttaaatttg atagcaaact tacaagtaaa
     8821 gaagaattag aaggcaaatt atgaaaaaaa tattattttt attctgttct ttttttctag
     8881 cttttgcaaa accaagtcta gagataccca agctctcaaa acaagcaaaa caaaacttta
     8941 ttttagaaaa tgtcaaattt aattataatg gcacaatata taaaattttt atagctaaaa
     9001 acaagaatga aaactcaaat tataaatata aaatcattta tttactcgat ggaaatgcct
     9061 tttttcctct ttttttaaat cttttcaaca ctcctgtcaa agaaaatctt ttaattattg
     9121 gaataggtta tgataataat ttagcttttg atacacaaaa acgcactaaa gattatacgc
     9181 ctacaacaaa tttaaataaa caaggtggag gtagtaaaga atttagaaat ttcttaataa
     9241 cccaactcat cccttatatc aacaaaatgt atcctattga ttttagccat caaattctct
     9301 ttggacattc ttttggagga ctttttgcca ttgatacact tctttatgat agtaagattt
     9361 ttagtcatta ttttattatt tcaccttctt tatggtggga taatagtgag tttttaccta
     9421 atatcataaa attacaaact tgccctaaaa tttacatcgg attaggttca ttggaaacaa
     9481 attcaagtat tatcaaaggt gtagctaagc tcaatgctca aaaacttagc gaaaaaatat
     9541 ccaaagaaac taattgtaaa actcatttta aactttttaa aaatgaaact catggaagtg
     9601 tcatatctaa agctatgctg tggatgaaaa agcttcttga tcttaattaa tcattgcttt
     9661 tatcatcact tttgccttgc aatctgcaca gcaataaagt gttttgattt tatcctcatc
     9721 attaccaaat ttaggcttca ttaaattggc tattttttct acagcttttt tggtcgcaaa
     9781 ttctttaccg cattctatac aggaaaaaag ctcatctttt gccatggttt gatattcaaa
     9841 ataagaagct ctaaactcca ttccactacg aaataatttt aaagtatctt tttcagcaca
     9901 acttaactca caatacccac aagtcgtaca aagagaagca ttgaatttca aagcattttc
     9961 ttgtttatca gcgattaaag ctcctacatt acaggcaccc acacaagaaa gacaaagcgt
    10021 acaggtatta ggattgattt ctaccttacc ataacgcaac cattcgccac tttctatact
    10081 accaaaatct tcatttttta tcatttcttg cattcttttg gcaaaatttt ctcttgtagt
    10141 taaggtgtta ttatgaaaat catattttaa atcttgtatg aattcttgct cttttaaaac
    10201 attttgcaat tctttttcat ctttagcaac aaaaatagct tttttttgaa attttctctc
    10261 aaaaaaagta tttaaaagca taatggcttc attgctacca cgagatacaa agtccgtata
    10321 aaaaaccaaa tttgcaccac tattttgcaa aagtgttaaa aaatgcatag aagaaagcca
    10381 tttttcaccc tctatcataa agggtaaaac atcttttggt aaagcaagat ttaaattttc
    10441 taaagacatt tttttaggaa tgattaaaat ttttttatct ttataaaact cacaaagggt
    10501 aaaaaaactt tctcttggca taggagcata atcaagcgat ccgctaggac acacactaat
    10561 acatcctcca caacccaaac aatccacttg agaaaattct aaatgctttt tttcatcatc
    10621 ttttaaaatc gccacagtag gacaaatttc agcacatttt gcacaatgct cactgcgtct
    10681 ttcatggtat tgacacacgc tagcattata gctaatataa gttttataag gatattttgg
    10741 acttttgctt tgcaaaaact ctaacaatgc ttcaagattt tcaaaattta aaagattata
    10801 acatccactt tgtcttgtaa aatctttacg cacaacgctt aaattttcag ctttaaaaag
    10861 taaaaaatca aaatctattt ccacttcttc gccttgattt ttaaccacag cacaaagctc
    10921 ccccacactt ccaaaaacag ctaaaatttc tgcactactt aaagcaataa ccttaaatcc
    10981 atgttctttt aaaaactcta cagtttgagt atcactatct gccaaaatca aacgattttg
    11041 cacttctttg ctttgttcta aatcaagccc taaatcataa acgctagccc ttgcttcata
    11101 aagcgttaaa acatttttac tttgctctaa aatttcatct tgagaatttt taagataaaa
    11161 gttaatctct ggggcataaa tttgtgcttt ttgattttta tcattgcaaa ttaatgcttc
    11221 tttatcattt gcctgatcta aaatttcaat agcatcaggc aaagggatta aaacatcatt
    11281 ttttatataa acaaaatctt gcattgtctt ccttaatctc tttaaaacat cattttataa
    11341 attctatgtt aaaataacca aatattttct taaggcttaa gatgaacaaa tttagaactt
    11401 ttccacagat taacactctt attgaagatg agagtttaaa atcctatcct ttttatatca
    11461 aagcattttt ttgtaaaaaa gttgtcgcaa aactaaaaga aaatttttcc caagatgaaa
    11521 tttctaaaga taaactactt ttagaaatca aaaaagaaat caaaactttt taccgcaaag
    11581 atttacaaag tgtgatcaat gcaagtggag tggttataca cacaaacctt ggcagaagtg
    11641 taatccatga agaactttat gaagcgtgta aagatatcat ttgtaattat tctaatgtag
    11701 agtttgattt agaaaatgga aaaagaggct ctcgctatgc tttggtgttg gaaaaactta
    11761 aaatgctttt tgaatgcgaa gatgctttag tagtcaataa caacgctgcg gcagtttttt
    11821 tagtgcttaa ttctctttgt tatgataagg aagtcataag ctcaagagga gaacttatag
    11881 aaattggcgg aagttttcgt gtgcctgaag tgataaaagc tgcaggtgta aagctttgcg
    11941 aagttggaac tagcaacaaa acacacttaa aagactatga acaagctatc agtgaaaata
    12001 ccgctctaat tttaaaaacc cacaagtcta atttcgctct tatgggtttt catagtgaag
    12061 caaatataaa agatctacat gaactagcaa aagaaaaagg gcttttgagt tattatgatc
    12121 taggttctgg ctggtgtgaa aatttaaatg aaaagctgat taaaaatgaa cctaaaatca
    12181 aaaaactcgt acaagaatgt gatattttaa gttttagtgg agataaactt tttggtagtg
    12241 tgcaagcagg cattatactt ggaaaaaaag aactcataga aaaacttaaa caaaatcaac
    12301 ttttaagaat gctaagagtg gataaattaa ccctatcttt tttaaatgaa agcttaaaag
    12361 cttatttaca aaaagattat gaaaaaatta ttaccttaaa acttttaaat gatgacttat
    12421 cctttataga agaaaaagct ttaagagtgc aaaaagaatt aaaatttcaa acccaactca
    12481 aaaaaagcaa aagtttagta ggaggaggtt ctatgcctga taaaagttta gatacttata
    12541 tactaacttt tcaaggagat gctttaaaac tacaaactcg atttagaaaa gaaaatatca
    12601 taggacgcat tgaaaatgat gaatttgttc ttgattttag aactatacga gaaaatgaac
    12661 ttcaaaaact tattcttaca attaatcaaa tggaaaactt atgaaatctg ttattatagg
    12721 aaccgcagga catattgatc atggaaaaac ttcactcatt aaagctttaa atggttttga
    12781 aggcgatagt ttaaaagaag aacaagaaag acaaatcacc attaatttaa gtttttcaaa
    12841 tcttaaatta aaagataaaa acatttcttt tatcgatgtt ccaggacata aagatttggt
    12901 taaaactatg gtaagtggag cttttggctt tagtgtttgt ttatttatcg tagatattaa
    12961 cgagggttta aaagaacaaa gtttagaaca tttagaaatt ttaaaaattc ttgatattaa
    13021 aaatatcatt ttagtactta gcaaatgcga tctttgtgaa aacatagagc aaaaaagtgt
    13081 agaaatttta gaagagttaa aaaatttaga ttatcccatt ttaaaagtat ttcataccag
    13141 tataaaaaat aatcaaggca tagaagaatt aaaaaattat ctttatacca tagaaaacaa
    13201 agaaaattat gaagaactga tttttcatta ttatatcgat agagtttttt ctctaaaagg
    13261 tataggaact gtcgttacag gcagcttgaa tgaaggaagt atcactttaa atgaaaaaat
    13321 catctgttta gacactcaaa aagaactcat tgttaaaaat atacaaaatc acgataccaa
    13381 tctagagcaa atcaaagctt gcaaccgtgt ggctttaagt ttaaattgtg attataaaga
    13441 gttgaaaaaa ggttatttac taagtaaaaa aggttatttt aaagccttta aagaatgcga
    13501 tgctttagtt aaagcaaaaa atttacaaaa tagcaaaatg attttttgtg tgggttcaag
    13561 acaaatagaa tgtaaaataa atatattaaa aaaactagaa aatgatgaat tttttgtgca
    13621 ttttagtttt gataaaaatg tatttttaag ttttgatgag gcttttattt tattacaaaa
    13681 caatcgtgtt ataggcggtg gtaaggtttt aaatccttta agcgaacctt taaaaaaaga
    13741 acaaaaaaat aaatttttaa tgtttttgaa aaataaagat tttaaagcgg ctttttcttt
    13801 cttaaaagac gcacacaaat acggctttgg cttgctttca agttatcaga gatttaaact
    13861 ttctcatcaa aaagcattga aattagcaaa agaattaaat caagtatttg ttgatgaaaa
    13921 aaatcttaat gtatatcatt tacaaagtct agaagaaatt aaaaatttca tcaaattcat
    13981 acttgaaaaa aatccttatg ccatgctttc agcacattct ttagctttaa ggattacttg
    14041 ggcaagtgaa aatttttgcg aactcgggct taaagagatg tcaaatttat tggattttca
    14101 aaatggaatt tattttaaaa aaggcataga ttttgaaaaa cttcaagaaa aaaataataa
    14161 tcaattatat gaaattttaa aaaaacaagg tattaaaccc gaagctcctt ataatcttta
    14221 tgatttttta gaacttgata gaaaaagcgg agataatata ctcaaaaaac ttacccaaaa
    14281 aggcttagtt gtaagacttt cacacaatct ttttatagaa aaacaagctc ttgaaaaact
    14341 tatgcaagaa tgtttaaatt tattaaaaaa tcaaagtctt gatgtgcaaa gtatgaaaga
    14401 atatttcaat ctttcaagaa aatatgctat tgcttattta gaatacttag acaaatttcc
    14461 tcaagtaagc aaagaagctg aaaaaagatt tttaacaaac atttagaaaa tcattataga
    14521 attaaacata atttatttaa aggatttata aactatgaaa aaattaagtt taattcttgc
    14581 ctgttcagca tctttgtttg ctgcaagtaa ttcagaaatt agtgattttt attcaaaaag
    14641 cattaaagca caatttccaa atgctaccgt tagtgtatca aatcgtcaaa aggttggtaa
    14701 tacgggtttt gaaagtgtta ttgtaagcgt tgaattaaat ggacaaaaac aagaaaacat
    14761 tctttttaca aaagatagtc ttattacccc tgatcttatc gacttgaaaa cgggaatttc
    14821 ttatgctcaa gaatatgaaa tgaaaaaatt tcaagaagca agagaaaatt ttacaaaaaa
    14881 tgctaaagct gtagcacaaa aagaaaccat ggtaatagct ttaggagata aaaataaacc
    14941 cgcaatttat gttttttcag atcctgaatg cccttattgt agagaacatt tagctcaaat
    15001 tgataatgaa cttaaaaact atcaagttaa ttatatttta actccagtac atggaaaatc
    15061 tgcttttgaa aaatccgctc taatctacaa agaagcaaaa aaagcaaaaa atgataaaga
    15121 aaaaatcgca attttaaaca aatactatga tgcaaatatc aaaaattatc caaaagtaag
    15181 cgatgcagaa ttaaaagaag ttttttcctt atatgaaaaa tatcgctcat taggtcttag
    15241 cgctactcca actattatta aataaaccta atgtctaaaa ttactttaat tttaagcttt
    15301 tttataacac tctttatgag tgcttgcacc aatacaactt tcacacaaag ctttattcaa
    15361 acaagcaatg aaggcatttt tatcagatca caaaaacaac aaagttttaa aatttccttt
    15421 caaaatccta gtcaacttca aactactcta gatagagatt tggctttaaa acttaaaaat
    15481 ttaggcttaa aagaagtaaa agagaatgca gattatgaaa ttttaatcaa tcttgtagat
    15541 atgaaaaagc attcttatgc tcaaaaaatc acaacttcag caagattttt ttatgatttt
    15601 gatcctttgg aaagcgatgg agaatggatg gtagaaaact actatactat gcaagttaat
    15661 ttacaaatca actctaaaaa tcacaattct caaaaaacaa gtcttcttgc aagaacagct
    15721 tatcttggaa ataaagaacg ctgtcaatta tctttaaaaa ataaaattat aaatcaaata
    15781 gtgagttttt tttattttta agaaaaagac aatcaagagt ataaaaactc ttgattttaa
    15841 gaattattaa gcaaaataag gtttgatttg ttctatccaa gcatcaattc ttgattcagt
    15901 ttgatcttct tgattatcat tgtcaagagc aagtccaaca aatttaccat ctacaaccgc
    15961 atcacttgct tcaaatgtat aaccatcagt tgaaacttct cctaccaaat ttgcgcctgc
    16021 atcttttaaa ttttgagcta atttacccat gccaccacaa aaagtatcag aataactttc
    16081 actatcaccc ataccaaata cagctacggt ttttccaccg agactaagcc ctgaaaaatc
    16141 aaaaccatcc caatcatctt gtaaatcacc acttccccaa gttgaagttc cacaaattaa
    16201 tttatcgtaa gaattcattt tagccgcatc aatatctgag atattaaaaa catcgctaat
    16261 tccaagtttt gaagcaattg tattagccgc tccttctgta tttcccatag cactaccata
    16321 gattactgct actgacatta ttttctcctt ataatttgat ttgatatttt atacggaact
    16381 aattttaaca tagttttgtt taaatcacac aaaaaatgtt ttatttcaat aaaatgtgtg
    16441 aaatttttgt tacgcggaca aacaatataa aatttttcaa aattgttttc ttttattaaa
    16501 ttcaataatt catgaatttc attttcaatt tttaaattat atgtattaat ctctttgcaa
    16561 agtggtaaaa ttgcaaattt cttatctatt ataataagat caccatcttg atctatattt
    16621 ttttcattat tttgaaaaga aatcttatca taaacataag agctaaataa aatttgcaca
    16681 tcaaaacaaa tgccataaag ataaattctt aaaagtctta aaaaatcgac attcttagat
    16741 attttagtat taaaaatcaa gctttttctt ttttgaaagt aaaaagcgta tgcattaagc
    16801 ttgatattta tattttgaat cttaccaaat gaaacatgca ttatatcatg taaaaaattt
    16861 ccaaatatca tttttaaact cttggtattt tttgcatatg aaagaggaat ttttagagcg
    16921 ctatcaacgc tcgcattata ttgagttaaa aaagtcaaca taagctcttg attgtttaaa
    16981 tagcgataaa tttgcggtat aaattctcgc ttatcatcaa atccaaataa catctttaac
    17041 ctttatagca agaaaattct ttattaagat taaaaatttt acaatattca caatacacac
    17101 aacttacact tctttttgca caaactaatg gaattttacg ctttttagct tcatttttga
    17161 tttttttcat agtattatga tttaaaaagc ttgttaacat tactatacat tctgtatcac
    17221 aaggaatcgg cttgcgatta actctatttt cattacgcgc atcccagtgt tctatttttt
    17281 tagcacctaa atcatgtaaa acagctctaa taggagtgat ttcatctgca ccaataacca
    17341 aaactgacat aaattctcct ttgtg
//
LOCUS       DAPIWU010000025        17242 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.025, whole genome shotgun sequence.
ACCESSION   DAPIWU010000025 DAPIWU010000000
VERSION     DAPIWU010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17242
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.025"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            156..1133
                     /locus_tag="RJ285_000657"
     CDS             156..1133
                     /locus_tag="RJ285_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HDV7383456.1"
                     /translation="MLKRLALLIALSSLVLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1134..2120
                     /locus_tag="RJ285_000658"
     CDS             1134..2120
                     /locus_tag="RJ285_000658"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDV7383457.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGKGELVLGNGKV
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2123..2590
                     /locus_tag="RJ285_000659"
     CDS             2123..2590
                     /locus_tag="RJ285_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HDV7383458.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2694..4160
                     /locus_tag="RJ285_000660"
     CDS             2694..4160
                     /locus_tag="RJ285_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDV7383459.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNMQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4188..4916)
                     /locus_tag="RJ285_000661"
     CDS             complement(4188..4916)
                     /locus_tag="RJ285_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7383460.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(4909..5652)
                     /locus_tag="RJ285_000662"
     CDS             complement(4909..5652)
                     /locus_tag="RJ285_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7383461.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVASYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILHFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            5735..5914
                     /locus_tag="RJ285_000663"
     CDS             5735..5914
                     /locus_tag="RJ285_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383462.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNRQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            5907..6476
                     /locus_tag="RJ285_000664"
     CDS             5907..6476
                     /locus_tag="RJ285_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HDV7383463.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRARELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(6506..6871)
                     /locus_tag="RJ285_000665"
     CDS             complement(6506..6871)
                     /locus_tag="RJ285_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HDV7383464.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            6994..7986
                     /gene="pheS"
                     /locus_tag="RJ285_000666"
     CDS             6994..7986
                     /gene="pheS"
                     /locus_tag="RJ285_000666"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDV7383465.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            7983..10304
                     /locus_tag="RJ285_000667"
     CDS             7983..10304
                     /locus_tag="RJ285_000667"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDV7383466.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMSNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIELKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIESISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNEEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     VVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            10301..11587
                     /gene="aroA"
                     /locus_tag="RJ285_000668"
     CDS             10301..11587
                     /gene="aroA"
                     /locus_tag="RJ285_000668"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDV7383467.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENILKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            11577..12410
                     /locus_tag="RJ285_000669"
     CDS             11577..12410
                     /locus_tag="RJ285_000669"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDV7383468.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQSLSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIKNFKI
                     N"
     gene            12542..14212
                     /locus_tag="RJ285_000670"
     CDS             12542..14212
                     /locus_tag="RJ285_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDV7383469.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEAATEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDGIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSAKELNSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            14212..14700
                     /locus_tag="RJ285_000671"
     CDS             14212..14700
                     /locus_tag="RJ285_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383470.1"
                     /translation="MKKYITMSILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            14697..16280
                     /locus_tag="RJ285_000672"
     CDS             14697..16280
                     /locus_tag="RJ285_000672"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDV7383471.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            16267..16929
                     /locus_tag="RJ285_000673"
     CDS             16267..16929
                     /locus_tag="RJ285_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7383472.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            16923..>17242
                     /locus_tag="RJ285_000674"
     CDS             16923..>17242
                     /locus_tag="RJ285_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDV7383473.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKNFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSK"
BASE COUNT         6233 a         2089 c         3046 g         5874 t
ORIGIN      
        1 atagacaacc ttttaaaaca agcctttatg atttgtaaaa attatatcat aaataaggct
       61 gcattgttaa tataattaat attttttaag aaaaaaaata ttataatcac aaacattttt
      121 gacttaaaaa aatttgaaat acctaaggaa aaacattgtt aaaacgactt gctttattaa
      181 ttgcactttc ttcattggtg ttgcatgcct cagatcttgt taaaatttat cttaatcaag
      241 gattagatgc tgttggtgta gcgattgaaa aagaattaac tcaaaaggat ttttggttaa
      301 gtgaaatagg agataaaaat atttcacttg gatactatga tgataatgtt gctatcgtgc
      361 ttacaaataa aacagataaa attctccgtg tttattctta cgaggacgga aaaataagaa
      421 aagattttga acaaaaagaa ataataactg gattaatggg tgataaaaaa atagaaggag
      481 atttgaaaac gccagtaggt ttttatgagt taggccgtaa gtttaatcca ggtgatcctt
      541 attatggtcc ctttgctttt gccacaactt atccaaattt acttgataaa gtacaaggaa
      601 aaacaggtgg tggtatttgg atccatggct atcctttaga tggttctaga cttgatgaat
      661 ttaaaacaag agggtgtatt gctttattta ataataattt ggagaaattt gcaaaagttg
      721 tgcaagataa aaaagttttt gttatgacag aagaaaaaga aaaaattaga gctaaaaagg
      781 atcaaatcgc tagtttattg gctgatcttt ttacatggaa actagcttgg acaaatagtg
      841 acactaatgc ctatttaagt ttttatgatg agcaagaatt taaacgtttt gataaaatga
      901 aatttgaaca gtttgcttcc atgaaaaaat ctattttttc tcgtaaagaa gataaaaaga
      961 ttaaattttc agatattaat atcagccctt atccgaattt agaaaatgaa actatgtata
     1021 gaatttcatt ttatgaggat tattacacta aaaactatca gtttagaggc gataaaattt
     1081 tatacgttaa gatagatagt aaaggtaaaa tgaaaatttt agcagagcaa taaatgtctt
     1141 taataaaaat tgatcaaaaa gcttatgaat acaatttaag acatattgct aaaaaaatag
     1201 ggagttttca aagattaatt tgtgttttta aagataatgc atatggacat ggagctaagc
     1261 ttttagctcc attagccaaa aatttaggag tttcttttgt tgctgttaag agtgaagaag
     1321 aagctcgaga aatcgaagaa ttttttgaga atatattaat actatcacat cgtcctcatg
     1381 gtaatgaaaa ttctcgattt atttatgctt taaatgacat ttctcaagta aaaaattaca
     1441 agcaagatat aaaaatacat ctaaaaatag atacaggcat gcatcgcaat ggaatttgtg
     1501 tagaaaattt agagcatgct ataaatctta ttcaaggtag tgatttaaaa cttactggaa
     1561 tgtttacaca ttttgctagt gcagatgaaa tggatggaag tttttttgtt caaaaagaaa
     1621 attttcaaaa agctaaaaag atagtaaaaa aatatttttc aaatttatta tttcattcgc
     1681 ataattctgc agcattattt agagggaaaa ttcccgaaga tgaatattgt agagttgggc
     1741 ttgttcaatt tggatatggg gattcaaatt taaaaagagt tttaagcttg tatgctcata
     1801 gattaagtca aaggatttta caaaaaggac agagtatagg atatggaggc atttttactg
     1861 ctgcaaagga tatggaagta gcaacttatg atttgggtta tgctgatggt cttttccgat
     1921 acaatggaaa aggggagtta gtgcttggaa atggaaaagt aatgcttgga aagatgtcaa
     1981 tggatagttt ttcttgtgaa aattctggtg aggaaatttg cgtgtttaaa gatgctgata
     2041 tttgggctga tttttttcat actattaact atgaaatttt agtaaaatta aatcctaata
     2101 ttcaaagagt tctagtataa atatgtttaa tatagtttta gtccacccta gaataccgca
     2161 aaatacaggt agtataggta gaatgtgctt taatgctggt tttaaacttc atattgttaa
     2221 accaactgtt tttgatattt cacaaaaggc tgttagaagg gcaggacttg attactggga
     2281 taaattagag cctattattt gggagaatct tgaagaattt ttgaatgaaa atatgattta
     2341 taaaaatcgc ttttttttcg caacaactaa gagtcaaaaa gcttattttg atgcagaatt
     2401 tcaaaaaaat gatttcttat tctttggaag tgagagttat ggtttgccta tggaattaat
     2461 gcaattaaat tgggaaaatg ctataactat acctatgaaa tcttatggaa gaagtttaaa
     2521 tttagccaca agcgttggta taatctctta tgaagcttta agacaaaatt ttagaaattt
     2581 tgcttcttaa aagtttcaaa tttacacaat agcttaaaac aaataaaatc ataaagtcct
     2641 ttttataaaa attatgttaa agtaaaattc agattatttt ttgaggagtt tggatgaaat
     2701 tagatattat gctagatttt gccaataaag cgtctgatat tatagctaat aagattgtcc
     2761 caaatacaga cattattatg gtagttttac ttattgtttg tgggctttat tatagttttt
     2821 taactcgctt tgttcagttt cgtatgttga gttctgtatt taaaattctt acagaaaaaa
     2881 acgaaggaca cgctaaagaa catatttcac cttttcaagc attaatgatc tcaactgctt
     2941 ctagagttgg tataggaaat attgctggaa tttctttggc attggctaca ggtggagctg
     3001 gtgctttatt ttggatgtgg gttatggcat tttttggtgg tgcctcagca tttgctgaaa
     3061 gtaccttagc tcaagtttac aaatcaaaag atgatacagg cgggtttaaa ggtggtccag
     3121 cttattatat aaaaaaagcc ttaggctcac atttttttgg agcttttttt gcttttattc
     3181 ttattattac ttatgcttat ggatttaatg gacttcaaag tcaaacaatg acttcgtctt
     3241 ttaaagttta ttatgatatg tttaatccaa atgctgctgt agattttgca tcaagttctt
     3301 ggccaatgat tattggtatt gttttaacta tttttggtgc atggatgttt ttttctcacc
     3361 atactaaaat aggtaaaatt agttctttaa ttgttccttt tatggcttta gcttatgttt
     3421 tacttgccgt gattgctgtt ttaatgaatt ttgataaaat tccttctgtg attcatatga
     3481 ttttacaaag tgcttttgat tttaaagcga tttttggtgg ttttgctggt tctgctttgg
     3541 ttatagggat taaaagagga cttttttcaa acgaagcggg tatgggctcg gcacctaatg
     3601 cagctgcagc agctttgaca agtcatccag ctaaacaagg tgttatacaa gccttttcag
     3661 ttttaattga tgttgttgtt tgtacaagtt ctggattttt agttcttttt tctatggcat
     3721 atttaggact tggagaaagt aaaattgacg gtggaatgcc tttagttcaa gaagctatgc
     3781 gtgagtatta cggtagcttt ggaatccatt ttattactat agctattgtt ctttttgcaa
     3841 taacttcttt aataggaaat tattattatg ctcaagctaa tgttaaatat ttaacaaatt
     3901 ccaaatttgt aatgaatttg tttagaatta cagctgtggc tatgattttt ataggctcgc
     3961 aaatgaattt aaaacttgct tggaatttgg ctgatttgac tatggctttc atggcaacga
     4021 caaatattat atctttattg cttttaggtg gtatagtaaa taaagtttta aaagatttta
     4081 atatgcaaca aaaatctggt atagatccta aatttaatgc tagcaaactt ggaattaaaa
     4141 acgctgaatg ttgggattaa aattcataag ccttagtggc ttatgaatta atgatttaaa
     4201 accttgttta aaaattctct caatctttca ttgctaggat tttcaaatac ttctttaggg
     4261 cttgcatcaa cagcaatttt tcctttatcc ataaaaaata tacgattggc aacatttcta
     4321 gcaaagccca tttcatgagt tactacaagc atagttaaac cttcttttgc aacatctttc
     4381 ataatgctta gaacctcgcc tatcatttca ggatctagag ctgaagtagg ttcatcaaat
     4441 aaaataacat caggattcat catcaagctt ctagcaatag ctatgcgttg tttttgtccg
     4501 ccagagagct tatggggcat tatattttct ttgtctgcta aacccacctt agcaagaagt
     4561 aattttgctt tttttatggc ttcttcttga cttaaaattc ctgttttaat gggcgttaaa
     4621 cataaatttt ccataacatt tttattggca aaaagattaa aatgctgaaa taccatgcta
     4681 actttttgcc tgatcttatt aatatcaatt tctttatcaa gtatgttttg cttattgatt
     4741 aaaatttccc cactatcagc tagttctaag cgattgatgc agcgtaaaaa tgtacttttt
     4801 ccgcctccac ttggacctat gatagctatt acatcgcctt ttgagattgt agtgttaata
     4861 ttttttaaaa cttctaattc tccatatttt ttttgtaaat ttttaacttc aatcattttt
     4921 attcatccta agttcaagtt tttttgcaaa atagctaaaa atttttacac ttacataata
     4981 aacaagtcca gtgaaaataa taggttttgg attgtaaagt acggcttgca agctttgact
     5041 ttgcatggta atatcaataa cactaataaa tcctacaaca gaagtttcct taaataaaga
     5101 aataaattca ttagctaatg caggtagaat gtttttagta gcctgtggaa gaataatttc
     5161 tttcattgaa gttttgtaat caagtcccat tgctcttgca gcttccattt gtcccttatc
     5221 tacactatta atgccacttc ttacaatttc tgctatataa gccgagctat taagtcctag
     5281 tgcaagaatg gctgcataaa ggttatctat aaaagtaaaa attacaaaag caaaaatcat
     5341 caattgtaaa attactggtg ttcctcgtat aatgtctata tattcatcta taataaaatt
     5401 aagcgtttta aatttagaga agtgtaaaat agctaagcta aaaccaataa tcactccgat
     5461 aataacagca caagcagtta ataaaagcgt aataagataa ctttttaaat aagcttttgc
     5521 attttctgta tagccatagc ttgcaactcc actaggatct tgaattttta atatttctat
     5581 cgggaaagaa aaatagcccc ataaaataat aataacaaaa aaaacaaaaa ttcttatatt
     5641 tttctgattc aatttgtaaa ccttttcaga gaaattattt aaaaaaagat tttatagaaa
     5701 tatctttgaa ttttctctaa agatttaaaa aaatgtgtta gaatttccca aaaataaggt
     5761 tgtatttatg gaaattttag atttcattct aatagttatt tttgtgtttt taatgattgt
     5821 tttggttata ggttttaatc gtcaaatgat gcaaaaaaac aaagaaagag aagaaagatt
     5881 taaaaaatat aaaaaaggag aacaaaatga gtaaaaaagt attaattcca ttggctcaag
     5941 gttttgagga agctgaattt ataggaattg cggatgtttt aaaacgagca agagaattaa
     6001 atccagattt ggaagttgtt atagcttcgt taaacagtga gttattggta aaaggtgcta
     6061 atagcattag tataaaagca gattgttcta tagaggatgt tgatatagaa aatttagatg
     6121 ccattgcttt ggcgggtggc tttgaaggta tgatgaatct taagaattca aatgttattt
     6181 taaatatcat taaacaactt catagcaaaa ataaaattgt tgccgcaatc tgtgcttctc
     6241 ctatagtctt aaatgaagca ggtgttttag agggcgagtt tgcttgctat cctagttgtg
     6301 aagttggact taatggaaat cgtgttaaca aggctgtagt tgtaaataaa aatgttataa
     6361 cttcagcagg tccagctacg gcaattcttt ttggtttaga actagctaaa aagttatgcg
     6421 gtgatgaaat ttatcaaaaa ttatatgagg gaatgttgct acctttgaca aaatagttta
     6481 aatggtagtt tttctaccat ttaaattaaa ataaagcttg aggattttct ttttttgttt
     6541 tttccttagg cagttcaaaa cctccaagca tatgaaaatg caaatgaaaa acttcttgtc
     6601 cactattttt tccacagttt gttaccaagc gatatccact tttatctaca cctaaaagaa
     6661 cagctaattc ttgtatgaaa cttgtcattt tggccataag ctcaggatca aattcttgaa
     6721 agtctttaaa atgtttttta gggattataa gtatatgtat gggtgctttg ggtgcaatat
     6781 catgaaatgc tagaaaatcg tcactttcaa gcactttatt gcatggaagt ttaccttcaa
     6841 ctatgagttc aaaaattgtt ttttcttgca ttatttatcc ttttttattg ttggtttgat
     6901 acaattatat ctttaaagtt tggtttttat gctgaattta aaatagtttt taatagaatt
     6961 agaacttgaa atattttatt taaggtaaga aaattgcaaa attttataga acagattcaa
     7021 aaatgtgaga atttaaatga tttggaagcc attaggattt ccgttcttgg aaaaaaaggt
     7081 attttaacag aaggctttac aaagcttaaa gagttagaag atgaggcgaa aaaagaattt
     7141 gctgctaaat taaatgcaca aaaagaaata tttaatgagg cttatttagc caaatttaaa
     7201 gatttggaaa atcttgcttt agaagaaaga atgaaacaag atgctttaaa ttttaactat
     7261 tttgatgaaa gtattacaac aggtgccttg catcctgtta tgagcaccat ggataaaatc
     7321 atagaatatt ttatagcttt gaattttagc atagaaaaag ggcccttaat agaagatgac
     7381 tttcataatt ttgaagcgtt aaatttacct aaatctcacc ccgcaagaga tatgcaagat
     7441 accttttatt ttgatgataa aaggctttta agaacacaaa cttcgccagt gcaaatacgg
     7501 acaatgcttg cgcaaaaacc tcctattagg atgatagccc ctggtgctgt atttagaaga
     7561 gattttgata ttacgcatac tcctatgttt catcaagttg aaggccttgt ggtggaagaa
     7621 gggcaaaagg ttagctttgc aaatttaaaa agtgtattgg aagatttttt gcgttatatg
     7681 tttggagatg tgaaagttcg ttttcgtcca agttttttcc catttacaga accttctgct
     7741 gaagttgata tttcttgtgt attttgcaaa ggaaagggtt gtagagtttg caaacataca
     7801 ggttggcttg aagttttagg atgtggaata gttgatccta atgtttataa ttttgttggt
     7861 tatgaaaatg taagtggtta tgcttttgga ttgggagtag aacgttttgc aatgcttttg
     7921 catcaaattc cagatttaag atctttattt gaaggtgatt tgagattatt ggagcagttt
     7981 agatgataat tactaaaagt tggttgaatg attggttaga acttgaagaa ataagttcag
     8041 ataaaatagc taaaacttta aactctatag gtatagaagt tgatagggtt ggcgctttaa
     8101 aggctccaga taaagttgtt gtaggctatg ttaaggaaaa aattaaacat gaaaattcag
     8161 ataaattaag catttgtcaa gttgatatcg gaagtgaaac cttgcaaatt gtctgcggtg
     8221 ctgcgaatgt tgatgcagga caatttgtag ctgttgcaac taaaggtgct atcatgtcaa
     8281 acggtatgga aataaaagaa gcaaaattgc gaggagtgga ttcttgtggt atgctttgtt
     8341 ctagcttaga actgggtttt gaaaaaatca atgaaggaat tatgctttta gatgagagta
     8401 tagggaaatt agaacttggg agacctttaa atacttatga aatttttaat gatgagctaa
     8461 tagaagtgga acttactcct aataggggtg attgtttaag tatttatggt atagctcgtg
     8521 atttagccgc agctttaaat ttaaatttaa aagaaccaaa accatttaaa gaaagtgaaa
     8581 atgttttagg tatcggtaga attttgcgct tagcagctga gaaagaactt aatggacttt
     8641 ataattatcg agccatagag ctaaaagaag aaattcaaac aaatttattg cttagtttaa
     8701 gacttgctca aattgaaggt ttgggaaaaa attccataga aaatttatta aattatgcaa
     8761 cgcattcaac tggtgttctt tttaatgctt atgatttaag tagtttttct gaaaaagatg
     8821 aagaatttac cattaattta agcaagcaag tgcatggaga aacaaaagta tcttacaaag
     8881 ataaactttt aagctttagc ggaattttcc aaaataatga aagtagatgt aaagatgatt
     8941 ctaaaataat tattattgag gctaattata ccgatccatt ggtaattgca gatgctaaaa
     9001 tatatcataa agatcaagat gaaaaaatgc tttatagaag ttttagggga agtgaaccta
     9061 aattaaattt aggaatggat tttttgcttg gtatttttga gcagattcca aatcttgtta
     9121 tttatagttc ttctcaacaa attttaactg acaaagaatt accaatcata ccaataagta
     9181 ttgaaagtat tagcgatata atagggcaaa atgttgataa agatgaagta ttaaaaatat
     9241 tgaaaaaatt aggttttgaa ctcatacttt caggtgaagg gcttataaat gttaaagcac
     9301 ctttacatcg tcctgatatt aaaaatttat cagatatttg cgaggaagtt gtaagaatta
     9361 taggtattga taatattgct tccaagggtt tggaatttat agaaaaaaat cgtttaaatt
     9421 ctgcatataa aaattatatt gagtttttga atttaaggaa aagagcagta gctagtggtt
     9481 attttgaaag cttacattat gttttggata atgaagaaga acttaaaaga ttgggttttg
     9541 actctgttaa attaaaacta atcaatccaa ttacagcaga acttaatact ttaagaacaa
     9601 cccttttaaa tcatttgtta aatgcagcaa gtttaaatgc aaaaaattct aaaaaaatta
     9661 ttaaactttt tgaattaggg gttgttttca atgttaataa tcaagaatta aatcgtatcg
     9721 catttatcca ttctggctta aaagaagaag ctaaaatttc caacaaggcc aaacctgaat
     9781 cggtgcaatt ttatgatttt cttttagaca ttaaaaatat tataggtgat tttaaactaa
     9841 aatcatcaaa atataatatt ttaagccctt atgaacaagc agatatttat ctatcggata
     9901 ttaaagtagg ttttataggc cgtttgcatt taaaaataga aaatgagaga gatttaccaa
     9961 aaacatatat ttgcgaactt gatttagatt taatcaggca agattttaaa atagctaagc
    10021 cttactccaa attcccagct atcactagag atcttagcgt gttaatacct aaaggttttg
    10081 aatacaatca gattaaaaat tgtatcgaag aattgaattt agaaatactt gaaaattttc
    10141 gtttagttga tatttatagt gatgaaaacc ttaaagaatt ttatagcatt actataagtt
    10201 tttcttttag ggatataaat aaaactctag aagataatca agtgaatgaa tgtatggata
    10261 aaattttaaa tactcttaaa aatttgggtc ttgatttaag atgaaaattt acaaattgca
    10321 aacccctgta aatgctatac ttgaaaatat agcagcagat aaaagcatat ctcatcgttt
    10381 tgctatattt tcgcttttaa cacaagaaga aaataaggct caaaattatc tcttagctca
    10441 agatacttta aacactcttg aaattataaa aaatcttgga gctaaaattg aacaaaaaga
    10501 ttcttgcgtc aaaattatac cccctaaaga aattttatct ccaaattgta ttttagactg
    10561 tggaaattca ggaactgcta tgcgtttgat gataggattt ttagcaggaa tttctggttt
    10621 ttttgtttta agtggagata agtatttaaa caatcgtcct atgagaagga taagcaaacc
    10681 acttactcaa ataggcgcta gaatttatgg aagaaatgag gcaaatttag ctccactttg
    10741 tatagaaggt caaaaattaa aagcttttaa ttttaaaagc gaaatttctt cggctcaagt
    10801 taaaacagct atgattttat ctgcttttag agctgataat gtatgcactt ttagtgaaat
    10861 ttctcttagt cgaaatcata gtgaaaacat actaaaggct atgaaagctc caataagggt
    10921 tagtaatgat ggcttaagtc ttgaaataaa tcctttaaaa aaacctttaa aagctcaaaa
    10981 tataatcatt cctaatgatc cttcttcggc tttttatttt gttttagcag ctattatttt
    11041 gcctaaatct caaattattt taaaaaatat tttgcttaat cctactcgta tagaggcgta
    11101 taaaattttg caaaaaatgg gtgccaagct tgaaatgaca ataactcaaa atgattttga
    11161 aactattggt gagatcaggg tggagtctag caagcttaat ggcatagaag ttaaagataa
    11221 tatcgcttgg ttaatagacg aagcgcctgc tttggctata gcttttgctt tggctaaggg
    11281 taaatctagt ttaataaatg ctaaagaatt acgcgttaaa gaaagcgata ggattgctgt
    11341 gatggttgaa aatctaaagc tttgtggtgt tgaagctaga gaacttgatg atggttttga
    11401 aatagaaggt ggatgcgaac taaaatcttc aaaaattaaa agctatggag atcaccgtat
    11461 tgctatgagt tttgctattt taggtttgct ttgcggaatc gagattgatg atagtgattg
    11521 tataaaaact tcttttccaa attttataga gattttatca aatttaggag ctaggattga
    11581 ttattgaatt agcaaaaaac tatggttttt gttttggtgt taaaagagct attaaaaaag
    11641 cagaacaaat aaaagatgcc gcaactatag gccctcttat tcacaataac gaagaaattt
    11701 ctcgtttgca aaaaaatttt aatgtcaaaa ctttggaaaa tatacaatct ttaagtaatg
    11761 aaaaaaaggc tattataaga actcatggta ttacaaagca agatttagaa gaattgagaa
    11821 aaaaagatat agaaattttt gatgccactt gtccttttgt tacaaaacca caacaaattt
    11881 gcgagcaaat gagtaaggag ggttatgaag ttgttatttt tggagatgaa aatcatcccg
    11941 aagttaaagg agtcaaaagt tatgtaagta caaaagctta tgtagttttg gataaaaaag
    12001 aacttcaaaa tataaaactt cctaataaaa tagctgtagt aagccaaaca actaagaagc
    12061 ctgagcattt tatggagata gtaaattttt taatacttaa aaccaaagaa gtaagagttt
    12121 ttaacactat atgtgatgca acctttaaaa atcaagatgc cattaaagaa ctctcgctta
    12181 aaagtgatgt tatggttgtt gtagggggta aaaactcagc caatacaaaa caactttttt
    12241 taattgcaaa aaccaattgt gaagatagct atctaattga aaccgaagaa gagttaaaaa
    12301 aagaatggtt tttggataaa aaacattgcg gcattagtgc aggtgctagt actcctgatt
    12361 ggatcataca aaaagttatc gccaaaataa aaaattttaa aattaattaa aaaatgtttt
    12421 caaatagaat aaaaaagtca aaaatttaaa aaaaattaac aaaaataaaa aaacttaaca
    12481 ctaattaaag aaaaataagg taaaatcaat caatttctaa aaattatttt aaaggatcat
    12541 aatgagcgag gtgaacaaaa aagttcaagg cggcgtagat gattatcttg aggaagaaga
    12601 ttttggacag cttttagaag cttttgataa atcaagagaa gaggctgcaa cagagggtgt
    12661 gattgtagag atcaaaaatg atgaagttta tgtagatata ggtaaaaaat ctgaaggtat
    12721 tttagctctt agcgaaatac aagatgacaa ttctaagcta ttatttaatg taggcgatgg
    12781 tattaaagtt gctgttatgg gttctcgtgg tggcagatct ttactttctc ataaaaaagc
    12841 tttgagaaaa gaaaaagtta tcgaatttat taaaaactat caagaaaatc aagatgatat
    12901 ttttaccgta aaagtagttg gaaaaaataa aggcggattg atagttgttg atgaaaatga
    12961 tgttgaattt ttcttaccaa aatctcaata tggcttcaaa gaaacaaata atattatagg
    13021 caaaacgttt aaagttaaaa ttattaaaat cgacaaagat gagcaaagta tcattgtttc
    13081 tcgtaaaaaa actttagatg acgagagaag aaaacgcaaa gaattgatca ataatgtagc
    13141 acaacaagaa gatttaattg aaggtattgt gaaaaaaatt actacttatg gtatgtttgt
    13201 ggatgtagga ggtgttgatg gtcttgttca ttacagcgaa atttcttaca aaggacctgt
    13261 aaatcctgga acactttata aagagggtga taaggttcca gttaaagtta taaagtatga
    13321 taaagaacgc aaacatttat ccttgtctat aaaagcggct ttacccgatc catggagcga
    13381 gataaaagat actcttgatg taggtgatac cattaaagta atagtatcaa atatagagcc
    13441 ttatggtgct tttgtggatt taggaaatga tatagaagga tttttacata tcagtgaaat
    13501 ttcttgggat aaaaatatta aaaatccaaa agattatatc aacaaaggtc aagaaattga
    13561 tgttgaagta attgaaatca atccaaatga aagacgctta agagtttctt taagaaattt
    13621 actttctaga ccttttgatg aatttatgaa atcttacaaa attgcagatg tggttgaagg
    13681 ggagatcacc tcggtaactt cttttggtgc gtttgttaaa cttggcggta ttgaaggtct
    13741 attgcataat gaagatgctt cttgggatag aaacgataaa tgtaaagaca aattctctca
    13801 aggggataaa atcaaggtaa aaattatcaa aatagatgaa gaaaaccaaa aaatatcatt
    13861 aagcgcaaaa gaattaaaca gttctccagt gcaagaatat gccaaaattc ataaagtcgg
    13921 cgatattgta aaaggcacta tccgtgatat taaagatttt ggtgtttttg tagagctaag
    13981 taaaaatgtt gatgctttaa ttcataaaga agatataagc acttctatgc ttgaaaattt
    14041 aaaaattggc gacgatattg aagctgctat agtttttatt gatgaaaaga aaaatagaat
    14101 tcgcctaagt gttaaaaatc ttgttagaat aaaagaaaga gaagttctta atgaaatcaa
    14161 taatgatgat aaagtaactt taggtgatat cattaaagat cagctagctt aatgaaaaaa
    14221 tacattacaa tgagcatttt gagtatttta ttactcattt tgcttgctgt tgtttttaca
    14281 ttgctttggc aatttaaagc taatgtaaat ttcattccac aatttgctaa agatacaaat
    14341 acgcagccaa gcattcaaac ccaaaatcaa gatctttcat ggcaagaaga attagcaaaa
    14401 tggcctacaa gagattttac cccagcagca gaaaaattta ccttatattt tgatgcggat
    14461 actagcgagc ttaaggagaa aaataaatat tatcaactta tagttggaaa atatgatatt
    14521 tattctatgt tttgcttaag acagacttta aattctttta atgtgaagta ttttcttctt
    14581 aaatctggcg atagtccaga aatctttttg gatacaggca atgaaaaact tatagatgat
    14641 attatcaaag aattaaaaaa atataaaata aatacagaag taaaggaaat ttggttatga
    14701 aaaaaaagat tatagtgtgt gatgctattt tggataaagg tgtcgatatt ctaagaaaag
    14761 ctgaagatat tgagcttata gaagctgcaa aatttccaaa agatgaactt atgcaaatgc
    14821 taagcgatat tgaagttgca attactagaa gttctacgga tgtagatgta aattttttaa
    14881 atcatgccaa aaaattaaaa gcgcttgtgc gtgctggggt gggcgtagat aatgttgata
    14941 ttccagagtg ttctaaacga ggagtgattg tgatgaatgt cccaactgca aatactattg
    15001 ccgcagttga actaacaatg gcacatcttt taacatcagc tagaagcttt gtcaatgctc
    15061 ataatttttt aaaaattgaa agaaaatggg aaagagaaaa atggtatggc attgaattga
    15121 tgaataaaac gctaggggtt ataggttttg gaaatatagg ttcaagagta gctatccgtg
    15181 ctaaagcatt tggtatgaaa attttagcct atgatccgta tatttctgct tctaagatta
    15241 cagatttaga tatggaacaa gcaaaaaatt tggatgaaat tttagaaaaa agtgatttta
    15301 ttaccattca cacaccaaaa accaaagaaa ccaatggtat gataggaaag caagaaattg
    15361 caaaaatgaa agatggaata agattaataa attgtgctcg cggaggatta tacacagaag
    15421 aggctttata tgaaggttta aaaagtggta aaatagcttg gcttggtata gatgtgttcg
    15481 ataaagaacc cgcgactaat catcctcttt tagactttga aaatatttca gttacttctc
    15541 acctaggagc aaatacttta gaaagtcaag acaatatcgc aagagaagct tgtgagcaag
    15601 cattaagcgc agcacgaggc gtggcttatc ctaatgcctt aaatttacca attaaaactg
    15661 aagatttacc accttttgta gctccttata tagaacttgt ttctaaaatg gcttttttag
    15721 ctgttcaaat tgataaaaat cctataaaaa gtattaaatt agaggctgaa ggaattattg
    15781 gtgagtatgc aaattctatg ctaacttttg cagctgttgg tgctttgggt ggaattttag
    15841 gagagaaaat taattatgtt aatgcagaat ttgttgccaa agaaaaagga gttgaattat
    15901 cttgcgaaac tcttccaaat agtggttata ataataaact tagcgttaaa attatcaccg
    15961 aaaattcaaa tatcagtgtt tcaggaacag tgtttaatga aaatgaacaa cgcatagttg
    16021 gattaaatgg ctttaaaact gattttaagc caaagggaaa aatgattatt tttaaaaaca
    16081 aagacatacc aggagttata gctaaaatca gttccgtttt ggcagctaaa aatatcaata
    16141 tagctgattt taggcttggt agagatggtt ttgggtatgc tttggctgtt gttttgattg
    16201 atgaaaaagt tcaaaaagaa gtattagatg aactaaaaca attagaggcg tgtgtatttg
    16261 tccaatatgt tgaaatttaa aattttaatt atagaagatg atatagattt aaacgaactg
    16321 cttgttttaa agttaaaatc tagcggttat gaagttatat ctttagcgga tttttttgga
    16381 gttgaagatt tgctcgataa tgagcaaatt gatcttttaa tagtcgatag aaatttgccc
    16441 agtggagatt ctttagaaaa aattcaagat ttaagagagc aaggatataa agaagcagtt
    16501 atttttctta cagccaaggc tttacatcaa gatttactcg aaggctttga aagtggttgt
    16561 gatgattatg tttgtaaacc ttttgatttc aatgagcttt tgcttcgcat taaagcaatt
    16621 ttaaaacgcc ataaaaaaga agaagaaaaa ctatcttttg gtgattttat tttagatttg
    16681 gttagttatg aattctttta caaaaatcaa aaattagaaa tctcaaatct tgactatgag
    16741 cttttaaaat gtttttttga aaatccaaat accttgctta ctagacaatt tttaagcgaa
    16801 agtgtttgga aagatgatac tacaagtgat aaaacaatca atatagctct aacaagactt
    16861 agaaataaat ttccaaaact aaaagatcat attataagtg ttaggggtat tggctataaa
    16921 ttatgctaaa aactaaaaat atttttatag ttttttttgt tgtattggct ttgatttttg
    16981 ggtttatttt ttatactttt actaattctt atcttaattt cttgcttata aaacaatatg
    17041 aacaaaaaat caaaagcctt gatgatgttt taaaattttc tctcttagag catttaaatg
    17101 atgctaatat caagaatttt gctaaagata ctagggctga ttttattatc ctaaacaatg
    17161 atatgaaaat aagttctgta aaaaatcctg attttttttc taatcttaaa gaaggagaaa
    17221 ttttaaattt caattcaaaa aa
//
LOCUS       DAPIWU010000026        17162 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.026, whole genome shotgun sequence.
ACCESSION   DAPIWU010000026 DAPIWU010000000
VERSION     DAPIWU010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17162
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.026"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1272)
                     /locus_tag="RJ285_000675"
     CDS             complement(<1..1272)
                     /locus_tag="RJ285_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDV7383474.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKTSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWFNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKL"
     gene            1245..1517
                     /gene="yajC"
                     /locus_tag="RJ285_000676"
     CDS             1245..1517
                     /gene="yajC"
                     /locus_tag="RJ285_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDV7383475.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1510..3090
                     /gene="secD"
                     /locus_tag="RJ285_000677"
     CDS             1510..3090
                     /gene="secD"
                     /locus_tag="RJ285_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDV7383476.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASAFIVIFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKSNNTRFWFGYRRR"
     gene            3090..4061
                     /gene="secF"
                     /locus_tag="RJ285_000678"
     CDS             3090..4061
                     /gene="secF"
                     /locus_tag="RJ285_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDV7383477.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGSNEEVIIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            4071..6500
                     /locus_tag="RJ285_000679"
     CDS             4071..6500
                     /locus_tag="RJ285_000679"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDV7383478.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYMQKLGKLINSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            6497..7009
                     /locus_tag="RJ285_000680"
     CDS             6497..7009
                     /locus_tag="RJ285_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7383479.1"
                     /translation="MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            6993..8390
                     /locus_tag="RJ285_000681"
     CDS             6993..8390
                     /locus_tag="RJ285_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383480.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQHNES"
     gene            8356..9540
                     /locus_tag="RJ285_000682"
     CDS             8356..9540
                     /locus_tag="RJ285_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDV7383481.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSIFERRMSI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPYFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGMQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            9527..10429
                     /locus_tag="RJ285_000683"
     CDS             9527..10429
                     /locus_tag="RJ285_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7383482.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYIIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            10366..10761
                     /locus_tag="RJ285_000684"
     CDS             10366..10761
                     /locus_tag="RJ285_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HDV7383483.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            10761..13697
                     /locus_tag="RJ285_000685"
     CDS             10761..13697
                     /locus_tag="RJ285_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDV7383484.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDALIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIEGEIEDRFGKL
                     DVYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            13699..14460
                     /locus_tag="RJ285_000686"
     CDS             13699..14460
                     /locus_tag="RJ285_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7383485.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            14457..15143
                     /locus_tag="RJ285_000687"
     CDS             14457..15143
                     /locus_tag="RJ285_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HDV7383486.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            15140..15952
                     /gene="thiD"
                     /locus_tag="RJ285_000688"
     CDS             15140..15952
                     /gene="thiD"
                     /locus_tag="RJ285_000688"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HDV7383487.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGHALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            15942..16574
                     /gene="thiE"
                     /locus_tag="RJ285_000689"
     CDS             15942..16574
                     /gene="thiE"
                     /locus_tag="RJ285_000689"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDV7383488.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            16552..>17162
                     /locus_tag="RJ285_000690"
     CDS             16552..>17162
                     /locus_tag="RJ285_000690"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDV7383489.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKL"
BASE COUNT         6301 a         1968 c         3147 g         5746 t
ORIGIN      
        1 aagcttttta gggagtataa ctatattctc tttgccattt gtagcatgat aaacactaac
       61 cccatattta cttgcataaa atttcattaa gagttgctgg agtttgtatt cgctactatt
      121 attaaaccaa gcattgttgc ttagggctat aataatttgt gaattttgat agttttgttc
      181 tttggtagct tcataacaaa ttgcatttgt gataatttga ttatctaatt tatatttgct
      241 ttgtatagga cctttggaaa attcttcaat atttttgaga aaatattttt ttgttaagtc
      301 tttaaaaaat ggaatttctt caccaaaggg aactaaaaaa tgcttattta aaatatagac
      361 attgcctttt ttaaagatat aagtactatt gtaagtatgc tctttttcaa catgaaatgc
      421 tcctgtaata atggtgattt tataagataa ttctttaagc ataagctcat atttggtatt
      481 ttttaaatca aaagcaaaag cggtttcagg caagattaca agttcttttt tttcatttat
      541 agcttgaagt atatcttgaa ttaagatatc agaatttgat tttaaatttt cttgtaaaaa
      601 tttttgatct tgagagatat tagtattgat gagtttgtag tttaaattaa gagtttgagc
      661 ttgtttttca ttatattgaa atccactaaa gaataaaata agaacaattg ctattttata
      721 atatcttgat atataaccct catagatgaa atatgctatt aaaaatatgc aaataatgcc
      781 acgataactt gggtcaaaaa aaccataaac tgtaaaaatc ccccaattaa accaatcaaa
      841 tcctaaagga tggataaaac ttatgcaaaa aattccacaa agccttaaaa aatcaaattt
      901 taataaataa cataatctaa aaagtaaccc ataaataaaa ccaatgataa ttggtataat
      961 tggtactaaa tagtttagat taaaataaat tgaagataaa ccaatccacc aaaaccaaag
     1021 aatccctaca aaaaaaccta tccaaaaata ttgtttagaa gttttacttt ttagaagtaa
     1081 aactaacccc caaatagcta aaaatggact aatggtttgt gtaaaaatat tttcaaaaaa
     1141 tgatagataa atagaatttg aaagtaaaat tgcaataaaa aagactttta ttattttaaa
     1201 aatgatagaa ttagtgttta atttttttgg aataaaggaa aaatatggca gaaaattcaa
     1261 ttttaacttc attgttacct cttgtagtgt tatttgcaat tttttatttc ttggtgatca
     1321 gaccgcaaca aaaacaagca aaagcacata aacaaatgct tgagtctttg caaaaaggag
     1381 ataaaatcat cactaatggc ggacttattt gtgaagtcgt aaaaccagag gaggatttta
     1441 tcaaagttaa gcttaatgaa gacaatgtta ctgcaaaaat ttcaagagaa tttatagcaa
     1501 agaaaattga tgcgtaattc taaaatcaat tatcgcttga ttatttttat agcggtattt
     1561 atttttggag tggctttttc actcccttct tttttgcagt cagaacgtgg tgcgaagatt
     1621 aatttagggc ttgatttgca aggtgggctt tatatgctct taggtgtaga taatgaagaa
     1681 gctgtaaaat ctaaaataaa atcaattgca tcttcattga gttattcttt taataaagaa
     1741 aatattttaa atgatggctt aaatacccat gatgatattt tagaatttac tttgcttgat
     1801 aatgcagata ttgcaaaagt tgaaaatttg cttaaagaaa taaaaggaat taatatacaa
     1861 agtgaaaata tgcactataa aatttctttt acctcagaag aagtaaaaaa tatagaaaat
     1921 tttgcacttt tgcaagcagt tgaaaccata agaaataggc ttgatcaatt tggtttagca
     1981 gagccaacag ttgctaaaca aggtgatgat aagattttgg ttgaacttgc agggattaaa
     2041 accaaagaag atgaactaag agcaaaagaa cgcatcacaa aagcagcgca tttgcaactt
     2101 atggaagttg atgattctaa aatgggtcaa gcttctacaa tgagcgatgc tgaggctgcg
     2161 agttatggac tgattttagt gcctgattct agaaatccaa atttaaaata taccttaaaa
     2221 agtataccta ttttagatgg atctatgctt actgatgcta gagtaggact tagcgataag
     2281 agtaattatc ctgtgattaa ttttacttta aatgctgagg gttctaaaaa atttgctgat
     2341 tatacaggag caaatgttgg aaagcgtctt gctattgtac ttgataataa agtatattct
     2401 gctccatcta tcaatgaacg cataggcgga ggtagtgggc aaatcagtgg agcttttact
     2461 caagaagaag cacgcgatgt ggcggtagct ttaagaagtg gagctttgct tgcgcctgta
     2521 aaattacttg aacaaagaag cataggacca tctttaggtg ctgatagtat taaaatgagt
     2581 atgatagcct taattggtgc atcggctttt attgtaatat ttatgatgat gtattacggt
     2641 gtggcaggaa tttttgcaaa tattgcaatg ttagttaatg ttttggtagt agtggctgtt
     2701 atggctatgt ttggagcaac tttaacttta ccagggatgg caggacttgt tttaactgtg
     2761 ggtatggcag tagatgcaaa tgtgattatc aatgagcgca tacgagaact cttgcgagat
     2821 ggagtaaata taagagctag tatagaacaa ggttataaaa atgctatgag tgcgattata
     2881 gattcaaata tcacttcttt agttacttcg gtagcgcttt atgcctatgg aacaggagca
     2941 gttaaaggtt ttgctgtgac tttgggaatt ggtattgttg tttctatgat tacagctatt
     3001 ttaggaactc acggaatgtt tgattatttt atgcaacgca tagaaaaaag taataataca
     3061 agattttggt ttggttacag gagaagataa tgcagttttt tagcgaaaag aaaatttatg
     3121 attttatgag aatgcgtttt gctgctattt ctctttcttt tattttgttt tttggttcta
     3181 tttatttgct ttgggatagg ggtttgcaat atggcattga ttttagcgga ggaactttag
     3241 ttcagcttaa atatgaaaat gcagctccta taacacaaat tcgagaaatt ttagaaaatc
     3301 aaggaacttt tcaaaattta tctgtaactg aatttggaag caatgaagaa gtaatcatac
     3361 gctttttagg aagtaatgat aatgtaagca atgatatagg tgagcatata agcactcttt
     3421 taaaggatac gggaaaattt gaagtgcgtc gtgctgatgt ggtaggtcca aaagtaggtg
     3481 atgaacttag aaataaagga cttatggcta tagctgtatc tttgatagca attttaattt
     3541 atatagcgtt gcgttttgag tggcgttttg ctcttgcggc tataatcagt gaaattcatg
     3601 atgttgtgat tactttaggg gcaatttctt tatttaaaat tgatgtcaat ctagatactt
     3661 tggctgctgt tttaactgtg cttgggtact ctttgaatga tacaattatt atttttgata
     3721 gaatcagaga aggtattaaa acaagtaaaa aaaccgaact tgcacctatt atcaatgaaa
     3781 gtgtttcagc aactttgtca agaacggttt taacttcagg gttaacttta gcaactgttg
     3841 tgatacttta tttctttggc ggggaaatga tacaaggatt ttctttggct ttaattgtag
     3901 gtattatagc gggaacttta agctctattt ttgttgcaag tccgacatta ttatggttta
     3961 aatttagtgt gcttgagttt agaaataaag aaattgaaaa agcaaaaaga aaacaagata
     4021 aagaacgcaa tcgtgcaatg tatgaaaaag gaactgtgta aggagaattt atggcttatg
     4081 aagcaagttt aatagaaaaa aaatggcaaa aaatttggga tgaaaatgaa tattttgagc
     4141 caaaagatga cttaaatttg cctaaaaaat atattttatc gatgtttcct tatcctagcg
     4201 gacgcattca catggggcat gtaagaaatt atactatagg tgatgcttta gcaagatatt
     4261 atcgcaagat aggttttaat gttttacatc ctataggttt tgatagtttt ggcatgcctg
     4321 ctgaaaatgc agctattaaa cataaaattc atcctaagtc atggacttat gaaaatatag
     4381 cttatatgaa aaaagaactt ttttctttag gtttttcttt ttctaaaaaa agaatgcttg
     4441 ctacttcaga tccactttat acaaaatttg agcaagaatt ttttattaag atgtttgaaa
     4501 aaggtttgat ttacactaaa gaagcaaatg taaattggtg tgaacaagat caaacggttt
     4561 tggctaatga gcaagttgaa gacggaaaat gttggcgttg tggtcatgaa gtggtgcaga
     4621 aaaaaatgcc aggttattat gtaaaaatca ctgcttatgc tgaggaactt ttaaaagatt
     4681 tagaagaatt aaaagataaa tggcctaatc aagttttaac tatgcaagaa aattggattg
     4741 gtaaaagcga aggtttggaa ttttctttaa atttagacga agaaagtaag caaaaaacca
     4801 aagaaagttc tttagaagtt tttactacaa gagcagatac aatttatgga gtttcgtata
     4861 tcgctttagc tccagaacat aagattgttc aaaatttgct ttcacaaaat ttattaaatc
     4921 aagatgtatt aaataaaatc aaagttattc aaaatcaaag cccaagagaa agacaaagtt
     4981 ctgaaaaaga aggttatttt ttaggaattt atgccattca tcctttaagc ggagaaaaaa
     5041 ttcctttatg ggtggctaat tttgtcttgg ctgattatgg tagtggagcg gttatggctg
     5101 ttccagctca tgatgaaaga gattttgaat ttgcaacaaa atataatctt gccatcaaac
     5161 aagttattca aactcaagaa aatttacctt atatgcaaaa attaggaaaa ttaattaata
     5221 gtcaagaatt tgataatctt gattgtaatg aagcaagatt aaaaatcatt tctcagtttg
     5281 aagctaaaaa tataggaaaa agggttgtaa attttaaaat tcgtgattgg ggtgtttcgc
     5341 gtcaaagata ttggggtgcg cctattccta tgattaaatg tcaaagttgt ggtatagtac
     5401 ctcaaaaact agaaaattta cctattactc tgcccgaaga tgtgcaaatt acaggtgagg
     5461 gtaatccact tgataaacat ccaacttgga aaaattgtat ctgtccaaaa tgtggtaaag
     5521 aggctcaaaa agaaagcgat actttagata ctttttttga aagttcttgg tattttgcac
     5581 gttttgcaag tgatgagaaa acttggcagg aaaaagcttt agatgaaaaa agtgtaaagt
     5641 attggatgag tgtggatcaa tatataggtg gtattgaaca tgcaatcttg catttacttt
     5701 atgcgagatt tttccaaaaa gctttaagag atttgggtta tttaacacaa aatgaacctt
     5761 ttgatagact tttaactcag ggtatggtgt taaaagatgg tgctaaaatg tcaaaatcaa
     5821 aaggcaatgt tgtagatcct gatgagatta tagaaaaata cggtgctgat accgcaagac
     5881 tttttatact ttttgctgcg cctccggcta aagagcttga atggaatgat gatgcggttg
     5941 aaggggctta tagatttatt tgcaaactct atgatagggc gcaaaatgtt aaaaaaggtg
     6001 agcttgtaga attaaaacaa gaaaatttaa acaaagaaga aaaatatgca agattaaagg
     6061 tatatgaagc tttgaaaaaa tcttttgaag tttatcatca aagttttgct tttaatactt
     6121 taattgcagc ttgtatggaa gctttaaatg ctttagcact ttgtaaaaat gaagctttgg
     6181 agcaagaggc tttttatatt attttaaata ttttagagcc tattattcct catgtttgtt
     6241 ttgagcttag cgaggagctt tttaaatgta aaaatttcaa aaaattagaa cttaaagaag
     6301 aggtttttgt aaaagatact ttaaatttag ctgtaagtat taatggtaaa aaaagggctg
     6361 aatttgaaat ttcaagtagt gcgagcaaag aagaaatttt agcttttgca aaagaaaata
     6421 ctgctaaatg gcttgaaggt aagagtatag ttaaagaaat ttatgtggaa ggaaagctag
     6481 ttaatctagt gattaaatga aaaagatttt aattttttgt ataggtttat ttttaggtgc
     6541 ttgtggatat attcctacat caaaaatcgc taataatatt ttcgatgaga aggtttatgt
     6601 taatgttgaa ttaagtcaac aagacccaaa aaatagtatc tatgttgccg atactttaaa
     6661 agaaatggta atttcaaaat tagggcgtaa acttgcttta aaacacgagg cagatgatgt
     6721 aattaatgtt aaaatgaata atttagaatt tattccttta gcttatgata aaaatggcta
     6781 tgttattagt tataaagcta aattaaattt agattttaat gttgtcttta aagatggttc
     6841 aagtcaggct tttagtacaa gtggaagtta taattttgaa atttctccaa atagtattat
     6901 tagtgattct gcaaggtatg aggctattcg agcagcttca agcgaggcat ttgatgagtt
     6961 tatttccgta attgctatta aagggcaaaa acgtgattcc aaatactaat gaaatagcaa
     7021 agcaaacttt aattgcatta aaagaaagaa aactaaaacc aactcctgaa aattatacgg
     7081 aaatttttga agaattatct ttaaaatatg gtatcacaag ctcaaataaa gctaaacttg
     7141 acaaatacaa aaccttgctt ttgccgattt atcaacaaga attaaattct aaaactataa
     7201 gaagtttaga agaactaatt agttttttaa tttctgtttt aaatagacaa agcggaaaac
     7261 aatttagtga attttttgat tttttatata ccatatctaa aactttgcaa ataagtaagg
     7321 ataaaaagat aagagatttg gctaaggtga cttcgattag aatttctaaa actatggata
     7381 gtgaaagtat ttacttgctt actaaaaaat ggaaagagct tgaaagaaat tatgatgaaa
     7441 atgacttaga agaacaagct cgtaaatatg gcattagtaa atatgatgat tatgatagcg
     7501 tgattaaaaa actcttagtc aagcttgaag agcgtagtta tgagcacttt agtgaattat
     7561 tatgcttggg tttaaatcct tcattggtag aagatttaaa aattcaaggt tttatacaaa
     7621 atttaacaca aaagcctttt gtaataggcg aagaaaattt taaaaatgaa ctaatggaat
     7681 ttataaatca tcgcataatg gttgataata tgtatgtcca aaaaaattta aattttttta
     7741 acgataatct aaaaaaaatc tatgaattgc ttgtcttact taataaatcg aatgaaaaaa
     7801 atatggattt tatcaatacc ttaaaaccag atgaaaatgg ggaagtaaaa cttagttttg
     7861 aggatttaaa actaaaattt aaacaacttg gagaaaaaat tacatcttta aataatcaaa
     7921 ttgaattcac gcaaagctta gaagagagag aggcttggag tgttcttaaa gagcttgata
     7981 aaatggatga aaattttaat aagtataaag ttaattattc tttagcttta ttttctatag
     8041 taaattaccg tttcattatg gaaaaatatg gtatgggaag tttgaatgaa atttttgttc
     8101 gatttaaaaa aattttaaaa gattcttgta gtgaatttga tgaactgtgg atgatagatg
     8161 aaaagagtta tttgattgtt tcgccaggaa aaagcaaaga tgaaattaca cagcttgtaa
     8221 atacaaatct taaaactata gaaaatttta gatttattta taagcaagat attataactc
     8281 ctaaaattca cgtggcttat cttgataagc aaagtaagcc aagtattaat attttagatg
     8341 agttaataaa gcaaattgca gcggttaatg aacaacataa tgaaagttga gaatttttta
     8401 gctcaaaaaa gtataaatta cgataaaatt gatcgttttt tgatgtttag aatgtatgaa
     8461 aaatataaga aatattttaa aaatattcct ataatccaac ttataggcac aaatggtaaa
     8521 ggtagcacgg gtagatattt aacccaactt ttagaaaatt taaattataa aatagggcat
     8581 tatactagcc cgcacatttt cagttttaat gaaagatttt atcttgatgg taagattgcg
     8641 aatgatgaag aattagaaca agctcatata agacttgaag aaatttttaa acaagacttg
     8701 caaaaattaa gttatttcga atatgctact tttttagcta tgattttatt tcaaaaatgc
     8761 gatttcattg ttttagaagc aggagtgggt ggagaatatg atgctacttc tatttttgaa
     8821 agaagaatga gtatttttac aagaattgga tttgaccata ttcaaatttt gggcaattct
     8881 ttagaagata ttgcaagaac caagcttaaa gttatggcac ctatagcact tataagtgat
     8941 gagcaagagc aaaatgtttt aaatttagca aaaaaaattg cttttttaaa aaaagctaat
     9001 ttgcaagttt cctccttaaa tccttttttg aaagaaaaat ttgagattta ttgtaaaaag
     9061 tttgttttac cttatttttt aaagcataat ttaaagcttg cattaaaggc ttgtgaaatt
     9121 ttaacttcgc aagaaaaaac cttagaagct ttaaaaaagt tacaagagtt aaatttacaa
     9181 ggaagatgcc aagaaatttc tccaaatttt tttgttgatg tgggtcataa tcccatggct
     9241 gctaaggcca tgcttgataa atttcaagga gaaaaaataa atcttattta taatgcttat
     9301 ttggataagg atatttttca aattttaaat acattaaagc ctattattga tacaatacaa
     9361 atatataaat ataaaagtgc agaacgaaag ctggccgatg atgaaattta tagtattgca
     9421 tcaaagctag gcatgcaatg taaagaattt gtaaaattag aagagaataa aaaaaatcta
     9481 gtttttggtt cttttatgct ggtagaaaat tttttaaagg agtggtgtgg taaaaaataa
     9541 attcactatt accattacag atattaacgg ttcaagacat ttttatttaa atcaaataat
     9601 caaaaaaata gttttttata ttattgcttt tattgtttta tttttagttt ttagtggttt
     9661 ttatatcaaa tatctcgata gcaaacttag tgatatcagt gaaaagcgtg aggagctttt
     9721 gaaaaaaagc aaagaattgg aattatctaa ttcgcaaatg caaaaaagca tagaagaaaa
     9781 aactcagcag tatgcagcta tagaagataa aatagcttct tttgaagagg ctttgggctt
     9841 agaagcagaa aataatctta caattagtgc aagacttgat aatcttcagc ttaccaatga
     9901 gcagcaactt ggaattttgg ggcaaattcc taatggatgg cctattgaaa ataaaggcat
     9961 tacaggaaat tttggctgga gagagcatcc gcttttaaaa agaagggaat ttcatcctgg
    10021 tattgattta agagcagaaa ttggtactcc tatttatgca ccagcaagtg gagtagtgga
    10081 attttcaggt tatagtgata atggctatgg ctataatgta attttattgc ataattttgg
    10141 ttttaaaaca gtatttgctc atatgatgcg caaagaagtg gtcaaagcag gtcaatttgt
    10201 taataaaggg cagttgatag gttatagtgg caatacaggt ctttctacgg ggccgcattt
    10261 gcactatgag gtaaggttta ttaataaaac tttagaacct ttgtattttt taaatttgca
    10321 aagaaaaaat atgaatgatt tttttaatca agaaaggaga gttccatggc aatctttaat
    10381 aaaggcggta tcagcccaac atccagctct agctcagaaa caacagtaat ttcttcaggt
    10441 gcgagaattg agggtaaatt ttattttgct tctatgcttc atgttgatgg agagttaagt
    10501 ggtattattc attctgaaag cattgtggtt atcggaaaaa atggaaattt aaaaggtgaa
    10561 ttacaagcag ataaaattgt agtaaatggg tgttttgaag ggcaacttga ggctaatagt
    10621 ttagaaattt tagcgggcgg agttgttaat ggtgatattt caacgcaaaa aatttctata
    10681 gaaaatggcg gtcgctttaa tggaactagt aaaattaaag aagatactat caaacttatt
    10741 gaaaataaca acgaagaata atgcaagctt cattttatga atacttacaa aatccaaaaa
    10801 tttgtgaact ttttctttgt aaagatgaaa aacaagcaga tttactcgct caagtttcac
    10861 gatttaaggg tttaaaaacc tttgttttac ctgattttag agcgcagttt ggagatgatt
    10921 taagggcttt ttctaaagaa ctttttgatc tttgtaagat tttaaatgct tatcataaag
    10981 aagaagaaaa aaaaatcctt atttctcctt taaatactgt tttaaaaaaa cttccttcaa
    11041 aaaaacattt acaaaattat catatcgata aaaaacaaaa ttttgatttg aaatgttttg
    11101 aagatgaaat ttcaagattg ggatacgaat ttgtagatat agttcaggat aaaggtgaaa
    11161 tttcaattcg tgcggatatt attgatattt tttgtatcaa tgaagaaaat cctattagaa
    11221 ttttactttt tggcgaagag attgaaagta taagatattt tgatttgcaa agtcaaaagt
    11281 ctattcctaa cgaactagaa cattttgaaa tttgtccttt tttaaaatat tttgacaaag
    11341 aaaattatga aatttttaag gacaaattag aagattttca aagcgatgct ttaatacatg
    11401 atatcaattc tttaggcttt tggtgtattg atgatttttt tgattattta gaacttgatt
    11461 ttttagcttg tgaaaagttt gatattaatg aatatgaaaa agatataagt tttgtgaatg
    11521 caaaaatttt acctcaagct aaaaaattta aagaattgca aagttcttac aataaagatt
    11581 tttttgaatt tcataaaaat aaaaaaatca cacttttagc taaaaacgaa gctttattta
    11641 aagctttaga gcttgaagat actcaaaata tccattttgt aaaaagtgat ttaaggctta
    11701 atcttattag tcctgaagag ctaattattt ctttaaatca aaaagaaaaa caaaaaacaa
    11761 gaaaaaaagc tagtttgatt atagatgagc ttaaaaatgg ggattatata gtacacgaag
    11821 attatggggt aggtaaattt ttaggtcttg agatgatagt gataagcgga gcaaaaaaag
    11881 agtttgttgc tatagagtat caaaattctg ataagctttt attaccagtg gaaaatcttt
    11941 atttgattga taaatatttg ggcgtgagtg gatctattcc aagcttagat aaactaggta
    12001 aaacaagctt tattaaactt aaagaaaaat taaagactaa acttttagcc atagcttctg
    12061 aaattgttat tatggcggct aaaagatctt tggtgcaagc aaaaaaaatt acagtggatt
    12121 taaatagaca gactgatttt atagctagtg cgggttttat ttatacaagc gatcaagata
    12181 aagcctgtca tgaaattttg caagattttc aaagtggaaa agtcatggat aggcttttaa
    12241 gcggtgatgt gggttttgga aaaacagaag tcgctatgaa tgctatttat ccagtagtta
    12301 aaagtggatt ttgcgcattt ttatttgcgc ctacgacttt gctttctcat cagcattata
    12361 aaaccttaaa aaagcgtttt gatccttttg atataaaggt ttttaaactg gatcgcttta
    12421 caagtagtgc agaaaaaaaa caagttttac aaaatttaaa agaaaataaa gcttgtgtag
    12481 ttgtaggaac tcatgcactt ttaagtgtag aatgtgaaaa tttagccctt gttattattg
    12541 atgaagagca taaatttgga gtgaagcaaa aagaaaagct taaagaaatc actcaaaatt
    12601 cacatatttt atccatgtca gcaaccccta taccaagaag cttaaatcaa gctttaagtt
    12661 ctataaaatc ttatagtgtt ttgcaaactc caccagaaga tagaatggat gtaagaactt
    12721 ttgtcaaaga aaatgatgac gcacttttaa aagaagctat agcaagagag ttaagacgtg
    12781 gtgggcaaat tttttatatt cataatcata ttgcaagtat agagcaatgt aaaaagcatc
    12841 tattagaact tttttctact ttgcgtattt tgattttaca ttctaaaatc gatgccaaga
    12901 tgcaagaaga agaaatgttg aaatttgaaa acaaagaata tgatttgctt ttaagtacct
    12961 ctatcgtaga aagtgggatt gatttaccaa atgcaaatac tatcatagta gaaaaaagcg
    13021 atcgttttgg catggctgat ttgcatcaat tgcgtgggcg tgtaggaaga agtgataagc
    13081 aaggttattg ttatttttta attgaagata aaaatgctat cacaaaagat gctttaaagc
    13141 gtctagtttc cttagaaagt aattcttttt taggcgcagg ttctattttg gcttatcatg
    13201 atcttgaaat tcgtggcggt ggaaatttat taggcgtaga tcaaagtgga catattgagc
    13261 aaattggata tagtttatat cttaaaatgt tagaagatga acttaatgct ttaagtaaaa
    13321 atgaagtgga tcaaaaagaa aataaacttg atttaaaact caatgttaat gcctttttaa
    13381 acagcgaact tatcagcgaa gatcgcctaa gattagaact ttatagaaga cttagcaagt
    13441 gtgagcaagt tcatgaggtt tatgagatcg aaggtgaaat tgaagatcgc tttggaaaac
    13501 ttgatgttta tactaagcaa tttttatctt tgattactat taaaatttta gctttaaata
    13561 aatttaaaag tattagcaac tatgagcaaa atattcaatt tactgcttta aatgatgaaa
    13621 aagaactcat caaggcaaaa agcaaagatg atgatgatat tttagaggca attttaacgc
    13681 atttaagaaa ggcttaaaat ggattggaat aaaacttatg cagcaattta tagagcaaga
    13741 aaagattatt taaagcctat ttttgaaatc gatcctattg ctttaaaaga tttagtaggt
    13801 atggaaagtc aaaaaaaagc actttatgaa aatactttaa atttcattca agataaggga
    13861 gcaaatcacg cacttttatg gggatctaag ggcactggaa aatcaagttt aattaaagct
    13921 atatttaatg aatttaaaga acagggctta agacttgtcg aattaaataa agaagattta
    13981 tttgccttag cagatatcat cgatgaaatc agattagaaa attttaaatt catacttttt
    14041 tgtgatgatt tttcttttga aaagggagat gatagttata aatttttaaa acctttactt
    14101 gagggaagca tagaaaaagc cccaaataat gtaattattt atgcgagttc aaatcgtagg
    14161 catttattaa gtgaaagcat tactgataat cttgatacgc aaatcacaca tacagaactt
    14221 catttaagcg atgctgctga agaaagatta agtttgagtg atagatttgg tttgtggtta
    14281 agtttttatc agggaaattt agaagagtat ttaaagatga tagattttta ttttaaagat
    14341 tattcttgtg ataaagagct tttgcacgct aaagctaaag aatttgctac tctaagagca
    14401 agtagaagtg gtcgtaccgc aaagcaattt tatttagctt ttaaggagaa ttttaaatga
    14461 ctggagcaca aatttttacc aagcttttaa atttggattt aaattatcat gattttgatt
    14521 ggcttgaaaa tcaaggattg agtgaatttg agcttttaat ttctgtcgtt ttaactcaaa
    14581 atacaaattg gaaaaatgtc ttaaaagctt tagaaaattt aaaaaaagaa aatattgcaa
    14641 gcttagaaca aatcaatact ttatccaatt tagaacttgc aactttaatt aagcctagcg
    14701 gattttataa taccaaaact aagcgtttaa aaggtttggt agaaagtatc ataaacactt
    14761 atgaaaattt agaaaatttt aaaacaaatg caagcagaga atggctttta aatatcaaag
    14821 gtttaggttt tgaaagcgtt gatagtattt taaactatct ttgcaaaaga gagattttgg
    14881 ttgtagataa ttatagtttg cgtttggctt tttacttagg ttatgagttt gaaaattatg
    14941 aagaattaag agaatttttt caaagtgaca tagagagtga gcaagaaaat ttgtataaaa
    15001 ttttaggaaa aaaatgcgaa ctttacgaac tttatcaaat ttttcatgct ttgattgtag
    15061 cttttgcaaa acagagtttt aaaggacaaa aattaagccc taagggtgaa gaatggatca
    15121 aaattttaaa ggaagattta tgaaagcaaa aggaagtgaa cttatacctg ttttaactat
    15181 agcagggagt gattgtagtg gtggagcagg gatacaagcc gatcttaaaa cctttagtgc
    15241 acacaatctt tttggtatga gtgtggtttt aagtgtggta gctgaaaata ccgcaagggt
    15301 gatttctgta cacgatatac ctactcaaag cgtggatgaa caaatgcttg ccgtgtttga
    15361 agatatagtg ccaaaggcaa ctaaaatcgg aatgataggt tcttgtgaat taatgagctg
    15421 tgtagctaaa aatttaagcg agtttaaacc tcaaaatgta gttattgatc ctgtaatgtt
    15481 tgccaaaaat ggccatgctt taatgccgca agaaaattgt gattttttca aacaaactat
    15541 aataaaattt gcagacattc ttactcctaa tattcctgaa gcagagtttt tatgtggttt
    15601 taagatcgct aatgaagagc agatgataaa agcagctaag catttatgca gcttgggggc
    15661 taaggcagtt ttacttaaag gcggacatag tgaagcaaat gccaatgatg tgctttataa
    15721 tggaaaagaa atttatattt taaaaggcga acgcatagaa actaaaaata ctcacggtac
    15781 aggttgtacg ctttcttcgg ctattgctag taatttagct aaaggcaagg atttatttca
    15841 cgctgttagt gaagctaaag agtatgtaag aaatgcgatt tattattcac ttaatcttgg
    15901 aaaaggttgt ggtcctacaa atcatttttt caagtttcta gatgaaaaat aaattagatc
    15961 ttagccttta tttggttgct actaagggaa ataaaagcga ggagtgtttt ttaaatactt
    16021 tagaaaatgc tataaaaggc ggagtaagta tcatacaact tcgtgaaaaa gagcttaatg
    16081 caagagaatt ttataaacta ggcttaaagg tgcaaaaact ttgcaagtct tataaaatac
    16141 cttttttgat taacgatagg gtggatatag ctttagcctt agatgctgat ggggtgcatt
    16201 taggacagga agatttagaa gcaaaattag ctagaaagct tttaggagat gaaaaaatca
    16261 taggcttaag tcttaaaaag ttagaacaac ttgagtttat acaaggagta aattatctag
    16321 gttgtggagc tattaaggca acgcctacta aagaaagttc gcttttaagc cttgagcttt
    16381 taagtcaaat ttgtgataaa agccctatag gggttgtagc cataggtggg attgacaaag
    16441 aagcacttgt tgagttaaag ggtataaatt taagcggtgt ggctgtggtt agggcgatca
    16501 tggatgctaa agatgctttt ttggcagcta aagagctaaa gcgtaaaatc tatgaaaatt
    16561 tatctcttaa atgaaactcc ttttgaaggg gtggaaaatc ttattttaaa tgagattgtt
    16621 ttttatgatt ttagtgtgga tttgagtttg tatgatgctt taatctgcac ttcaaaaaat
    16681 gctttaaaag ctttacaaca tgcaaaaatc actttaaatt tcaaactcaa tttatacgct
    16741 gtgggacaaa gtacagctca atacgctaaa aatttaggtt ttaaaaagat taaaattcca
    16801 tcaaaggctt atggaaaaga tctttttctt gaatttaaag aggagttaaa aatgcaaaaa
    16861 tgtttgtatt taagggctaa aaatattgtt tcaactttaa atttggatct taaaaatgta
    16921 ggtgtggatt tagatgaaat gattgtttat gaaaatgttt ttaaaaaagg cgacaaaaag
    16981 cttatctatc ctgctatttt tatattcacc tctcctttaa gtgtagaaaa ttttttaaaa
    17041 ttttatagct taaaagaaga agataaggtt gtagttatag ggcaaagcac agcaaagaag
    17101 cttttaaatt ttaaaaatct ttatatatgc gaaaatcaaa gtcttttaga ctgtgttaag
    17161 ct
//
LOCUS       DAPIWU010000027        17111 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.027, whole genome shotgun sequence.
ACCESSION   DAPIWU010000027 DAPIWU010000000
VERSION     DAPIWU010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17111
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.027"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            97..1896
                     /locus_tag="RJ285_000691"
     CDS             97..1896
                     /locus_tag="RJ285_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HDV7383490.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGNSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKHGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILTAEIPFHSICFKDASGTSNPNKIYKTIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LRYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVTPD
                     ANIVELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEILAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            1909..3483
                     /gene="pckA"
                     /locus_tag="RJ285_000692"
     CDS             1909..3483
                     /gene="pckA"
                     /locus_tag="RJ285_000692"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDV7383491.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     YEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            3493..4875
                     /gene="argH"
                     /locus_tag="RJ285_000693"
     CDS             3493..4875
                     /gene="argH"
                     /locus_tag="RJ285_000693"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDV7383492.1"
                     /translation="MKNEMWSGRFSDASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYRTNRELSAEIL
                     GFKDIMLNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(4897..6000)
                     /gene="ychF"
                     /locus_tag="RJ285_000694"
     CDS             complement(4897..6000)
                     /gene="ychF"
                     /locus_tag="RJ285_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDV7383493.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(5997..7448)
                     /locus_tag="RJ285_000695"
     CDS             complement(5997..7448)
                     /locus_tag="RJ285_000695"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDV7383494.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYDDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNRA
                     SIHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAVMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPYLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(7445..8041)
                     /locus_tag="RJ285_000696"
     CDS             complement(7445..8041)
                     /locus_tag="RJ285_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7383495.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(8060..8608)
                     /gene="apt"
                     /locus_tag="RJ285_000697"
     CDS             complement(8060..8608)
                     /gene="apt"
                     /locus_tag="RJ285_000697"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDV7383496.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFAPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(8605..8937)
                     /locus_tag="RJ285_000698"
     CDS             complement(8605..8937)
                     /locus_tag="RJ285_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383497.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(8937..9374)
                     /gene="rpiB"
                     /locus_tag="RJ285_000699"
     CDS             complement(8937..9374)
                     /gene="rpiB"
                     /locus_tag="RJ285_000699"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HDV7383498.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKIDERSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            9539..10093
                     /locus_tag="RJ285_000700"
     CDS             9539..10093
                     /locus_tag="RJ285_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HDV7383499.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            10110..10898
                     /locus_tag="RJ285_000701"
     CDS             10110..10898
                     /locus_tag="RJ285_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDV7383500.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKIFSPRGVYYEKV"
     gene            11035..11763
                     /locus_tag="RJ285_000702"
     CDS             11035..11763
                     /locus_tag="RJ285_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7383501.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            11785..12564
                     /gene="peb1A"
                     /locus_tag="RJ285_000703"
     CDS             11785..12564
                     /gene="peb1A"
                     /locus_tag="RJ285_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HDV7383502.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            12566..13318
                     /locus_tag="RJ285_000704"
     CDS             12566..13318
                     /locus_tag="RJ285_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7383503.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            13329..13988
                     /locus_tag="RJ285_000705"
     CDS             13329..13988
                     /locus_tag="RJ285_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7383504.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            14096..15025
                     /locus_tag="RJ285_000706"
     CDS             14096..15025
                     /locus_tag="RJ285_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDV7383505.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            15192..>17111
                     /locus_tag="RJ285_000707"
     CDS             15192..>17111
                     /locus_tag="RJ285_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDV7383506.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPILAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKVANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEIS"
BASE COUNT         5684 a         2351 c         3072 g         6004 t
ORIGIN      
        1 tttttattcg ttttatatcg cctatagcaa taattttggt aatgtgttat caaatttttg
       61 tataataatg aaaaaatatt tttttaagga aaaataatgg ctaaaaaatt catcgatgta
      121 atggatacaa gctttaggga cggttttcag tctgtttatg gagctagggt tttaatggat
      181 gatttttttc ctgcagtaga agcagcaaaa gaagcgggta ttactcattt tgaatttggt
      241 ggtggtgcta gatttcaaag cttgtatttt tatcttaatg aagatgcttt taccatgatg
      301 gatagattta gggctattgt aggaaaagat gctaatcttc aaactttagc aagaggagtc
      361 aataccgtta ctttagatac tggaaatagt gaacttattg atttgcatgc aaaacttttt
      421 gcaaaacacg gtactacaac gataagaaat tttgatgccc ttaatgatgt aaataattta
      481 aaatttagtg gtgaatgtat agtaaaacat gggttaaagc atgaaattac tattacttta
      541 atggatttac cgtcaaattg caaaggtgct catgatgtgc ctttttatga aaaaatttta
      601 aaagaaattt taacagcaga aattcctttt catagtattt gtttcaaaga tgcaagtgga
      661 acttctaatc caaataaaat ttataaaacc attaaaatgg ctagaaaaat tttacctcaa
      721 gatacacata ttagacttca tacgcatgaa accgcagggg tgagtatagc ttgctatctt
      781 gcagcgcttg aagcaggggt tgatggtatt gatttggctg cagctcctgt aagtggtgga
      841 acttctcagc ctgatatttt aaccatgatg catgctttaa aaggcaaaga ttatgattta
      901 ggtggacttg aagaagaaaa aattttaaga tacgaagaag ttttaaaaga ttgtttaaaa
      961 gagtattttt taccacctga agctactatg gtaaatccac ttattccttt ttctcctatg
     1021 ccaggaggag ctttaacagc aaatacacaa atgatgaggg ataataatat tttagataaa
     1081 tttccacagg tcattcatgc tatgagagaa gttgtggaaa aaggtggatt tggtacttcg
     1141 gttactccag tttctcaatt ttattttcaa caagcattta ataatgttat gtttgggcct
     1201 tggaaaaaaa tcgcagaagg ttatggaaaa atggtgcttg gttattttgg aaaaactcca
     1261 gttacacccg atgcaaacat tgttgaactt gcttcaaaac aacttaattt agaacccact
     1321 acagagcttg ctattaatat agccgataaa gatgagagta aaagcatagc ttatactaaa
     1381 accttgcttg aaaaagaggg tatagaaacg agtgaagaaa atatatttat tgcagcagct
     1441 tgtaaagaaa aaggtatagc atttttaaaa ggagaggcaa aggtaaatat acgcaaatta
     1501 gctagcatgc caaagcctat gagtgtagat gaaaacaaat ttactgtagc tgtaaatggt
     1561 aataaatatc atgtggaagt gagttatggt tttgataaag atgttaatgt taagagtgta
     1621 aaaaaagtag aagaaaataa aaatattatt tcttcaaatt caacaagttc tgtcgatgct
     1681 gaaaatgaaa ttttagcagg tatttcaggt aatgtcttta aaatttatgt taacgaaggc
     1741 gaggaagtaa aatcaggtca agctatcatg gttttagaag caatgaagat ggagattgag
     1801 gttaatgccc caaaagatgg aattatttta gagctttgta ttaaaatagg tgatactgtt
     1861 aatgaaggcg aagtattagc tatttacaag aattaaagtg agggaaaaat gaaaaaattt
     1921 gataagttag gtttggataa tataaaggaa atttttcata atttaagtta tgatgaatta
     1981 aatgctcatg aaaaagcaaa taatgaaggt ttaagcacgg ataatgatac tttttgtgta
     2041 gatacaggga tttttacagg tagaagtcct aaagataaat attttgtaaa acaagatcca
     2101 tctagtaaat atatagcttg gggaaaggta aatcagccta ttacaaaaga attatttgat
     2161 aaacttttaa ctaaagcaaa gcaagaatta agcggaaaga aaatttatgt tcaagatgtt
     2221 ttttgcggtg cttctttgca aagtcgcaaa gcagtaagat ttgttactga aattgcatgg
     2281 caagcgcatt ttgttaaaaa tatgtttatt cgcccaagtc aagaggaact tgagaatttt
     2341 aaagcagatt ttattgttta taatgcttgc aaatgcatca atgaagatta caaacaagat
     2401 ggtttaaatt cagaggtttt tgtgatcttt aatgttgaag aaaatatagc ggttattggt
     2461 ggaacttggt atggtggaga aatgaaaaaa ggtatttttt ctatgatgaa ttattggttg
     2521 ccactagaaa ataaactttc tatgcattgt agtgcaaatg tcggagaaaa agacgatgtg
     2581 gcacttttct ttggacttag cggtacagga aaaactacgc tttcaaccga tccaaaaaga
     2641 agactcatag gtgatgatga gcatggctgg gatgatgaag gtgtgtttaa ttttgagggc
     2701 ggttgctatg caaaaacaat caatcttgat cctgaatatg agcctgaaat ttatggagcc
     2761 attaaaagaa atgcactttt agaaaatgta gttttaagag ctgataagag tgttgattat
     2821 gctgatgcct caaaaacaga aaacacgaga gtttcttatc ctatagagca tattgaaaat
     2881 catgagccta gtctaaaagc agggcatcca aaaaatatta tatttttaag tgcagatgct
     2941 tttggaattt tacccccggt aagcaaacta agcaaagagc aggctatgta ttatttttta
     3001 agtggctata cagcaaaagt agctggaact gagcgcggta taacagagcc tcaagcaact
     3061 ttttcagctt gttttggaga accttttatg cctttacatc caacggttta tgcgagattg
     3121 cttggtgaaa agattgaaaa acatgaagtt aatgtttatc ttgttaatac gggttggagt
     3181 ggcggaagct acggtgtggg taaaagaatg agcattaagg ctactagggc ttgcattaat
     3241 gctattctag atggaagtat tacaaaatgc gaatttgaaa attttgaagt gtttgattta
     3301 gctattccaa aagctttaga aggtgtagaa agtgtacttt taaatcctat aaatacttgg
     3361 ttagataaaa atgcttatat tgcaacaaga gataaattag cacatatgtt tatacaaaat
     3421 tttaaacgtt atgaagatgt caaagaaggc attgaattta gcaaatttgg accaaaaatt
     3481 taaggcattt aaatgaaaaa tgaaatgtgg tcaggacgtt ttagtgatgc aagtgatgag
     3541 cttttaaaag aatttaatgc aagtttaaat gtagataaaa ctttgttcaa tgaagatata
     3601 caaggttcta tagcacacgc tacaatgctt gaaagttgtg gtattttaaa aaaagaagaa
     3661 ttagatgcta ttataaaagg tttagagcag gttagaagtg aaatagagca aggtaaattt
     3721 atttttgata ttaaagatga agatattcat atggccgtag aaaagcgttt aagcgagatt
     3781 ataggtagtg aaattggtgg aagacttcat actgcaagaa gtagaaatga tcaagtggct
     3841 actgatttta aactttttgt caaaaaatct catattgaac ttataaagct tttaaaagaa
     3901 ttgattcaaa ccatgctcga acatgctaaa gtgcataaaa aaactattat gccaagtttt
     3961 acacatttac agcacgctca gcctgtgagt ttttcttttt atattttagc ttatgctttt
     4021 atgttaatgc gagatattaa gcgtttgcaa aatagcctag aactcgcaga cttttcgcca
     4081 cttggatctt gtgcatgtgc aggaacaagc tatagaacca atcgtgagtt gagtgctgaa
     4141 attttaggat ttaaagatat tatgctaaat gctatggatg gagtgagtga tagggatttt
     4201 gctcttgatt tgctttatga tatagcagtt atttttacac acacatcaag actttgcgaa
     4261 gaaatgatct tattttcaag ttcggagttt tcttttataa ctataagtga tagcttttca
     4321 acaggaagtt ctattatgcc tcagaaaaaa aatcctgatg tttgtgagct tatacgtgga
     4381 aaaacagggc gtgtttatgg aaatttgatt tctcttttaa ctataatgaa agctttacct
     4441 ttagcctata ataaagatat gcaagaagat aaagaaggga tttttgatag tgtaaaaacc
     4501 gctaaagata gcttaatcat cttaaatgca atgctaaaag aaatacaaat taataaagaa
     4561 aatatgctta atgcttgtaa aaaaggtcat ttattggcta ccgatttggc agattatttg
     4621 gtgcgtgaaa aaaatattcc ttttagaaaa gcacatttta tagtgggaaa tgttgttgca
     4681 caagctgaag cacaaggtat tgatataagt gaaattaaag atctttcaaa aatagatcct
     4741 gtatttgatg aaaaagctat ggaactttta aattttgaat tttctttaaa ttctaagcaa
     4801 agtgaaggct caagttctat tgcaagcgta gaaaagcaaa ttcaaatttt ggaaggtttt
     4861 attcaaaatt tataaatatt gtttaggcta ttttgcctaa acattgaatc taaagtgcat
     4921 tacatcgccg tctaaaacga tatagtcttt tccttcaagg cgtagctttc ctgcttcttt
     4981 ggcgccattt tcgcctttgt attggatata gtcttcatag gaaataactt cagcttttat
     5041 aaagcctttt tcaaagtcat tatgaatcac gcttgctgct tttggtgctt tccagccttt
     5101 tttgattgtc caagaacgca cttcaactac accagcggta aaataactga tcagtccaag
     5161 cttagcaaaa gcagtgcgta tgatttgatc aagaccgctt tcgttaactc ctagagagct
     5221 taaaaattca tgactttctt catcgcttaa tcctactaat tcttcttcga tttttgcaca
     5281 aagcttgata acttcatgat catttttttt agcatattct tttaaagctt ttacataatc
     5341 attatcttca ctaataccat tttcatcaac atttgcacca taaatcacct ctttagcaga
     5401 aagcagtctt aattccttga ttagggcttg ataaatttca ctttcctttt caggataaga
     5461 acttgcagct aagcctttgt ttaaatgatc aagtaaggaa tttgcaagtt cgagactttc
     5521 tttggcgccc ttttgattgg ctttggcttc tttggtgagt ttttctattt ttttactcag
     5581 ttgctcaata tctgctaaaa taagctctgt attgataatt tctacatcac gtaaaggatc
     5641 aactccacct tcaacatggg taatattttc ttcatcaaaa caacgtacta tatgcaaaat
     5701 aacctcagtt tcacgtatat ttgaaagaaa tttatttccc aagccttcgc ctttacttgc
     5761 gcctttaaca agtccagcga tatctacaaa ttctattaaa gaatgcataa ttctttcagg
     5821 ttttactatt ttagcaagtt cattaagtct taaatcagga acttcaacca tggctttatt
     5881 aggctctatg gtgcagaaag gatagtttgc actttgggca ttttgtgctt tagttaaagc
     5941 attaaaagtt gttgatttgc caacatttgg aagtcctact atacctacgc ttaaactcat
     6001 ttagctttcc ttaaaatttg aattaaataa ttaacacaca ttctaactcc agctccacct
     6061 gcgccaaaac tagaatatcc ccaagatttt tctgtataag caggtcctgc tatgtcaaga
     6121 tgtagccatt tatctttata ttctttacga ataaatttat ctaaaaataa ccctgcggta
     6181 attgcacctc cgtagcgact agaggcagta ttactaacat cggcaatatt tgattttata
     6241 agttctctta agtaagggtt gaaatgtaag attgtggtat attctccgct ttttttagag
     6301 cttagataaa aatcattttg caattcctca ttatttccca taatagcact tgtaaattct
     6361 ccaagtccta caacacaagc tccagtaaga gttgccatat cgataagtaa atcaggtttt
     6421 aaatcctgtg caaaagaaag acaatcagct aaaaccaagc gtccttctgc atctgtattt
     6481 cttacctcta tgcttacacc ttcacgactg attaacacat catcaggctt ataagcattg
     6541 ccgcctatca tattttcagt tgcgcccaaa atgcaatgca cttctaaatc taaagcaagt
     6601 tcagctacgg cttttatgat tcccattact gctgctgcac cgcttttatc agctttcatt
     6661 gtaagcataa aatcagctgg ttttaagctt aatccaccgc tatcgtaagt taagcctttt
     6721 ccaacaaata caacacgttt ttttgcattt ttggctttat agcttagatg aatgaggcgt
     6781 ggtgggtgta tcgaggcgcg atttaccgct aaaaaggcat tcattttttc tttggctaag
     6841 aatttttcat cataaatttt acaaataatg tttttatttt ctttagctaa attttgcgca
     6901 tcttctgcca tttttaaagg ggtgtaaatt tcaggaattt cattgactat atttttagta
     6961 aaatttgtag cattagctaa aatttctcca cgctctaaac ctatcttagc ttcatcttta
     7021 ttaaatttct taccatttaa ttcttcgctt gaaataataa atttttccaa agtacttgtt
     7081 tttttctcgc ttttatattt gtcaaattta taagctccaa aaagtacgcc ttcaactaaa
     7141 gatgcaaaac ttctaactac acaatctcct attatgctag gaagttttac gcttttaata
     7201 ttaagtttct caagagtttt atatgctgtg caaagactta atcttatatc atcataagca
     7261 agacttttaa gctctaaata aagcttttta ttgtttaagt ctaataatgc accttcgcct
     7321 ttgtaattat taagtttaaa aaaatctttt tctttgttaa aaatttttaa atttttatcc
     7381 tgtataaaaa caagttcaaa gtctgctttt atagcatcta gttttttatc gtttaattca
     7441 aatttcatga ttttttcctt ttatctttaa gtatagcttt ttccatttgt ttaaaaccaa
     7501 ataataaaag ggataaaaaa gctataataa taatggctgc ataataccaa tgttcttcag
     7561 cccaagtcac catcttccaa atttgttctc caaaatacca agctagaagt atagtgattg
     7621 atgcccaaac ccaagcacta aaaagattga taatagcaaa tttttttgca ctataacgcg
     7681 tgattcctat actcataggt ataatggttc taaagccata catatagcgt tgtataaaaa
     7741 taataggcca accaaaacgt tgtaaaagta ggtgtgctac tgcaaattta cgcctttgag
     7801 tttttaattt tttttgtatg tagcgtttat tatatcttcc tatatagaaa taaatttgat
     7861 cacctacaaa accaccaagt cctgctataa atataacaaa acctaaattt acatgtcctt
     7921 gatgagcaaa aatacctgct aaaattaaag ctaactctcc ttctaaaatg caccataaaa
     7981 aaataataat ataagctaga tctttgtatt ggtaaagtaa attttttaaa aattcttcca
     8041 tttgtacctt tctatagttt taaatttcta aaacactata aactgaagta agtttttcaa
     8101 gtttatttgc tccatttaaa tctttaagat tcattaaaaa acaagcttca acacatttag
     8161 ctccagcttt ttgaatgagt tcatatgaag ctatagctgt tccgccagtt gctattaaat
     8221 catctacaag taaaactctt gcattttgaa tatttttaaa tgcatcttta tgaagttcta
     8281 ctttatcgct gccatattca agatcgtatt cgcagctaaa ggtttcaaaa gggagttttc
     8341 caggttttct aataggtgca aaaggaagat taagttttgc acaaatcata gatgcaaaga
     8401 taaatcctct gctttctgtt cctgctatga agtctagatt gtaatctttg tagcgttctt
     8461 ttaaatgtct aagtagaaaa tttaaagctt ctttgttatt tagtagagtg gtgatatctc
     8521 taaaaataat tccttttttt ggaaaatcag gaataatcct aatgctatca agcagatatt
     8581 ttttttcttc ttgtgttagt tttatcataa taatgcctcg atttttgctt ctaattcttt
     8641 aattctttgt cttagtttgt cattttccaa gcgatattga gaatttctgg ttcttaaaga
     8701 tgtaaggtct gctttgattt tattaagttc ttctgtgagt atatctatat ttccaagact
     8761 tctttgaagt tgaatttgta gttttctaat gacaatctca gtatcatcaa gattgttttt
     8821 gataaaatct tttgatgttt tttctttatt aagtagagtt ttatagtaaa acaacattac
     8881 aataagatag atagttgcac aaatcaatat agttaaaaca agccagtttg taaacattat
     8941 atttttacct caattttttg aattctttgc atatgtctcc cttcttcaaa aggagtttga
     9001 atgaattttt ctataatatc tatagctaat tcaaccccga ttaatcttcc gcctaatgcc
     9061 aaaacattgg catcattatg ccttcttgca agttctgcac ttaagctttc atgacataat
     9121 gcacaacgaa tgtttttatg acgatttgct gcaatagaaa ttccaattcc acttccacaa
     9181 ataagaatgc caaagcttcg ttcgtctatt ttttcggcaa gtaaatgtgc ataatcagga
     9241 taatcgcagc ttgcgcaagt gtttgttcct aaatcgttaa aaattatatt tttttctttt
     9301 aaaaatacgc aaattttttc ttttaattca aaaccagcat gatcactagc aatataaatt
     9361 ttttccctaa gcattggctt cctaattact atataaaata agataaaaac ctaatcttat
     9421 catattaaat cataaaaaca gcttttcttt ttttaaaaat aagctttatt tttctttata
     9481 tatgttagaa tcatgtgaca agaaaaataa aatttcaata aattaagggg agaagaaaat
     9541 gaagctcata ctcataggat cttcaacagg tggtcctaat cagcttaaat ttcttttaaa
     9601 ggatattgat gtaaaaaata cttgtgtagt tatagctcag cacatgagtg ccagttttat
     9661 tccatctttt gtggggcaat ttaataaaga agcttttagt gaagtgtgct tattgaacga
     9721 taaagagata ttaagcaata aaatttatat ttgccctaaa aatactattt tatctggaaa
     9781 tttaaatatt gtagccgctt ggcaagatgt ggcttcaagc tttaaaccga gtgtggattt
     9841 actttttcat tccgctgttt ctttggcaaa aacaaataaa atacttgcta ttattttaac
     9901 gggcatggga gatgatggcg caaaaggttt atttgagctt tataaaacag gagttagatg
     9961 tttatgtgag aatgaagcag atagcgtcgt ttatggtatg ccaaaaagag caaaagatat
    10021 gaatccgcat ttaaaaccta tgagcttaaa agaaattaaa aaagaaattg taaattttat
    10081 tgatcaggat taataataag gaaaattgca tggaaaaaaa aataactcct agcgaattgg
    10141 aacttaatga atttataaaa attatcaacg aaatgagtgg tattgattta accgataaaa
    10201 aaaatatact agctttaaag ttgaataaat ttcttgaagg aactaatact aaaaattttt
    10261 ccgaattttt gggaaaatta aaaagcaata gacaacttaa acaagaaact ttagattttg
    10321 taaccatagg tgaaacttat tttttaagag aattggctca attgaaagaa ataatttatt
    10381 atgccaaaag cttagaaaag agagtaaata tcctaagcgc cccttgttca agtggagaag
    10441 aagtatattc tttggcatta ttggctgcgc agaattttat taaagatatg tatattttag
    10501 gcgttgatat taattcaagt gtgattgaaa aagcaaaact tggaaaatat caaggaagaa
    10561 ctttacagcg attgagcgag agtgaaaaaa gaaggttttt tttagaaagc gaagataaat
    10621 tttatactat taataaaaat gagctttgta cttgtaaatt tgaactttgc aatgtttttg
    10681 aagaaaaatt ttcaagattg ggaaaatttg atattatagc ttctagaaat atgattattt
    10741 attttgatca tgaatcaaaa ctaaaactta tggagagatt tcatagaatt ttaaatgata
    10801 aaggaaggct ttatgttggc aatgctgatt taattccaga gactatttat tttaaaaaga
    10861 ttttctctcc aagaggtgtt tactatgaaa aagtataaat tctaaaaatt actaaaagtt
    10921 acactttgga aatttattag taaaaataag ttacattttg aagtagtttt ctttatttaa
    10981 tgataaaata atttcaatta attttatatt tagttaaaaa tacaaggaaa aaacttgatt
    11041 gaattaaaaa atgtaaacaa atactacgga actcatcatg ttctaaagaa tattaatctt
    11101 tctgttaaag aaggtgagaa gcttgttatt ataggtccaa gtggaagtgg aaaaagtaca
    11161 actatccgtt gcatgaatgg gcttgaagaa gttagttcag gagaggtcgt agttaacaat
    11221 cttgttttaa atcataaaaa taaaattgaa atttgccgaa aatattgtgc aatggttttt
    11281 cagcatttta atttatatcc acatatgacg gttttgcaaa atttgacctt agctccaatg
    11341 aaacttcaaa aaaaatctaa aaaagaagct gaagaaacag cttttaagta tttaaaagtt
    11401 gtaggtttgc tggataaagc aaatgtttat ccagcaaccc tttcaggtgg acaacaacaa
    11461 cgcgttgcta tagcaagatc actttgtact aaaaaaccct atattttatt tgatgaacct
    11521 acttcagccc ttgatccaga aaccatacaa gaggttttag atgtaatgaa agaaatttca
    11581 catcaaagca atactaccat ggtggttgtt acacacgaaa tgggttttgc aaaagaagta
    11641 gcagatagga ttatttttat ggaagatggt gctattgtgg aagaaaatat tcctagtgaa
    11701 tttttctcaa atccaaaaac tgaaagagcg cgactctttt tagggaaaat tcttaaaaat
    11761 taaccaaaat tgaaaggaga aaaaatggtt tttagaaaat ctttgttaaa gttggcagtt
    11821 tttgctctag gtgcttgtgt tgcatttagc aatgctaatg cagcagaagg taagcttgag
    11881 tctattaaat ctaaaggaca attaatagtt ggtgttaaaa atgatgttcc gcattatgct
    11941 ttacttgatc aagcaacagg tgaaattaaa ggtttcgaag tagatgttgc caaattgcta
    12001 gctaaaagta tattgggtga tgataaaaaa ataaaactag ttgcagttaa tgctaaaaca
    12061 agaggccctt tgcttgataa tggtagtgta gatgcagtga tagcaacttt tactattact
    12121 ccagagagaa aaagaattta taatttctca gaaccttatt atcaagatgc tatagggctt
    12181 ttggttttaa aagaaaaaaa atataaatct ttagctgata tgaaaggtgc aaatattgga
    12241 gtggctcaag ctgcaactac aaaaaaagct ataggtgaag ctgctaaaaa aattggcatt
    12301 gatgttaaat ttagtgaatt tcctgattat ccaagtataa aagctgcttt agatgctaaa
    12361 agagttgatg cgttttctgt agacaaatca atattgttag gttatgtgga tgataaaagt
    12421 gaaattttgc cagatagttt tgaaccacaa agttatggta ttgtaaccaa aaaagatgat
    12481 ccagcttttg caaaatatgt tgatgatttt gtaaaagaac ataaaaatga aattgatgct
    12541 ttagcgaaaa aatggggttt ataatatgaa tgaaagtgta ggttttgttg aacatttaag
    12601 acaaattctt acttcttggg gtttatatga tgaaaatagt ataagccctt ttgcggtatg
    12661 gaaattttta gatgctttgg ataataaaga tgcttttatt aatggtttta tttatacttt
    12721 agaagtaagc attcttgctt tgcttatagc tacaattttt ggaactatag gcggagttat
    12781 ggctacaagt agatttaaaa ttatcagagc ctacactaga atttacgtag agctttttca
    12841 aaatgttcct ttggtaatac aaattttctt tttgttttat gccttacctg ttttaggtat
    12901 aaggcttgat atatttacta ttggtgtatt gggtgttggg gcgtatcacg gagcttatgt
    12961 aagcgaggtg gttagaagtg gaattttggc tgtgccaaga ggtcagtttg aagcttctgc
    13021 gtctcaaggg tttacttata ttcaacaaat gcgttatatt atagtacctc aaaccattag
    13081 aattatttta ccgccgatga caaatcaaat ggtaaattta attaaaaata cctctgtatt
    13141 gcttattgta ggtggagctg agttaatgca ttctgctgat agttatgcag ctgattatgg
    13201 aaattatgcg ccggcttata tatttgcagc ggttttatat tttataattt gctatccttt
    13261 ggcttatttt gcaaaagctt atgaaaataa attaaaaaaa gcacatttaa cgagataaag
    13321 ggttgttaat ggaaaatgtt tttaatgcac aaaatattga atttttaatg caaggtttat
    13381 ttctgacatt aaaaatagcc ttagcaactt gtattatttc gattgttttt ggaacttttt
    13441 tagctataac taaaaattat ggggatagat taagtaaatt tttagcagct tgctatatag
    13501 atatttttag aaatactcct ttattattat ggatgcttgc agcttgtttt gttctacctg
    13561 tattttttgg acaatttcct caagcttttt ggggtactat aggattttca ctttatacga
    13621 gttcggttat ggctgaaatt attagaggtg gattaaattc tataccaaaa ggtcagtttg
    13681 aagcagctta ttctcaaggt tttggtaaat tttttactct tttttatatt attttaccac
    13741 aaacttttag aaaaataata cctgctttat tatctcaaat tgtaaccact gtaaaggata
    13801 cagcttattt agcgggttta ggtatagctg aacttactta taattcaaaa actatattgg
    13861 caaaactaac aagttttgaa gaaattttag cgatgatagg tgttgttgcg ggaatttatt
    13921 ttataatatg tttttcactt tctatgttgg taagatatta tgccaaaaag acagcttaca
    13981 tttcttaaaa aagcttatat ttttatataa gctttttaaa tttacagcag tttttaacat
    14041 tttttttatt aaaatctttt gtattaattc ataattttat tgattaaggt tttttatgcg
    14101 aggttataaa attttttcag gctcagctaa tgtcgaattt gcaagacaag tttctaaata
    14161 tctctccctg cctttaagtg atgctggagt aaagcggttt agtgatggag agattagtgt
    14221 tcaaattgat gagagtgtac gcggaaagga tgtttttatt attcaaagta cttgcgctcc
    14281 tacaaacgat aatttaatgg aacttttaat tcttacagat gctttgcgtc gctcaagtgc
    14341 aaattcaatt acggctatta tcccatattt tggctatgcg agacaagata gaaaagcaaa
    14401 tcctagagtg ccaattactg ctaaacttgt ggctaatttg attcaagcag ctgggattga
    14461 tcgcgtagct acgatagatt tgcatgcagg acaaattcag ggtttttttg atattccagt
    14521 agataatctt tatggaagta tagtttttaa tgattacatt aaagccaaac attttaaaaa
    14581 tgctattata ggaagtccag atataggggg tgttgcaaga gctaggagtg ttgcaaagca
    14641 tttaggactt gatatagtta tagttgataa gcgtcgtgaa aaagccaatg aaagtgaagt
    14701 aatgaatatt attggagatg taaaagataa agaagttatc ttagtggatg atattattga
    14761 tactgctggc actatagtta aagccgcgga agctttaaaa gaaaaaggtg caaaatctgt
    14821 tatggcttgc tgtactcatg cagttttaag tggaaaagcc tatgagagaa tagcaagtgg
    14881 agttttagat gagcttgtgg taacagatac tataccttta aaagagcaat taccaaatat
    14941 taaagtatta agcgttacac ctgtttttgc tgaagtaata cgtcgtgttt atcataacga
    15001 aagtgtaaat tctctcttta tttagattaa aaaagcttaa agattatttt taagcttttc
    15061 atttttatgc tacttaaaga aacaaaaaac atatattttt ttaaaaatgt gaaaaaacta
    15121 aacatctttc tatataattt aatctataaa tctgctattc tttgaaaata ttttattttc
    15181 ttaggagaaa tatgactcag ttaagtacta aaattttatg gttgtttgtt gcaactttag
    15241 gcgctatttg ttttggttat ttagctttac aaaatggcga aagtgtatca gcgatttatt
    15301 tggtggttgc tgctgtatgt atttatatga taggatatag attttatggg cgttttgtag
    15361 cttataaggt tttagaactt gataaaaatc gtgcaacacc agcacttgta gaaaatgatg
    15421 ggcgtgattt tgtgcctaca aataaagctg tattatttgg acatcatttt gctgctattg
    15481 caggagcagg tccattagta ggacctatct tggccgctca aatgggatat ttgccttcta
    15541 tgctttggat tttagtagga ggagttttag cgggtgctgt gcatgatttt gttgttcttt
    15601 ttatatctac tcgtagaaaa ggtagaagtc ttggcgagat gattaaggat gagatgggta
    15661 aatttacagg tggagttgct atggtggcga tttttggcat tatgcttatt attattgcca
    15721 ttttagctat ggtggttgta aaagctttag cagaatctcc atggggttta tttactatcg
    15781 caatgactat tcctatagca atatttatgg gcatttatat gcgttttatc cgtccaggta
    15841 gagtagggga ggcttctata ataggttttg tgcttttaat tttggctatt cattatggta
    15901 gcgttatagc tgctgatcct tattgggcta aaatatttac tttagaagct ccaattttgg
    15961 caattgttat gatggcttat ggttttattg cttctgtttt acctgtgtgg tttttacttg
    16021 ctccaagaga ttatctttca acttttttga aaatcggtgt tattgtggta atggctgtag
    16081 ctattgtttt ggttgctcct gatttacaaa tgccaaaagc aaatactcag tattttgatg
    16141 gaacaggtcc agtatttgca ggtggagtgt ttccattttt atttattacc attgcttgtg
    16201 gtgcgatcag tggttttcat gctttgattt ctagtggaac tactcctaaa atgcttgaaa
    16261 acgaaactca tgctttggct gttggatatg gctctatgct tgctgagagt gctgtggcga
    16321 ttatggcttt aatttgtgct tgtattttac atccaggtct ttattttgct ataaattcaa
    16381 gctctgcttt gataggaaca gatgttgtaa atgtagcaca aactatttca agttggggat
    16441 ttagtattac tcctgaagaa attactactt taaccacaaa tataggagag catactatac
    16501 tttcaagaac agggggagcc ccgacttttg ctataggtgt agctttgatc ttacatgaac
    16561 tttttggcgg cgtggatttg atggcttttt ggtatcattt tgctatattg tttgaagctt
    16621 tatttatttt aacagcggtg gatgctggga caagggcttg tcgttttatg gtgcaagata
    16681 tattgggtaa tgtttataaa cctttaggag atattcataa ttatccagct ggacttttgg
    16741 ctacggcttt aagtgttgca ggttggggat attttcttta tcaaggtgcc attgatccta
    16801 agggaggaat ttatacgctt tggcctcttt ttggcgtgag taatcaaatg cttgcgggta
    16861 tggctttact tcttgctaca actatacttg taaaaatggg caaggcaaga tatacttggg
    16921 ttactttagt acctgcggta tttgtcttag tggcaactct gtatggagga attcaaaaaa
    16981 ttatgcctta tgaagaaggc aataaagtag caaatgcggt aagtcatgta gccgccgtta
    17041 gcatacaaag tcaaaaaatt aaagatttag aatttaaatt aaataatact aaagatgaaa
    17101 aagaaatttc t
//
LOCUS       DAPIWU010000028        16802 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.028, whole genome shotgun sequence.
ACCESSION   DAPIWU010000028 DAPIWU010000000
VERSION     DAPIWU010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16802
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.028"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            66..1337
                     /locus_tag="RJ285_000708"
     CDS             66..1337
                     /locus_tag="RJ285_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7383507.1"
                     /translation="MNDKIYKFHPNDTKMDKKIIQITEKSGFKVAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            complement(1365..2630)
                     /gene="secY"
                     /locus_tag="RJ285_000709"
     CDS             complement(1365..2630)
                     /gene="secY"
                     /locus_tag="RJ285_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDV7383508.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(2630..3022)
                     /locus_tag="RJ285_000710"
     CDS             complement(2630..3022)
                     /locus_tag="RJ285_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDV7383509.1"
                     /translation="MNLTKAAGSTRKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVPKIKDENISVTGSK"
     gene            complement(3027..3470)
                     /gene="rpsE"
                     /locus_tag="RJ285_000711"
     CDS             complement(3027..3470)
                     /gene="rpsE"
                     /locus_tag="RJ285_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDV7383510.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(3482..3838)
                     /locus_tag="RJ285_000712"
     CDS             complement(3482..3838)
                     /locus_tag="RJ285_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDV7383511.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(3848..4384)
                     /gene="rplF"
                     /locus_tag="RJ285_000713"
     CDS             complement(3848..4384)
                     /gene="rplF"
                     /locus_tag="RJ285_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDV7383512.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(4463..4858)
                     /gene="rpsH"
                     /locus_tag="RJ285_000714"
     CDS             complement(4463..4858)
                     /gene="rpsH"
                     /locus_tag="RJ285_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDV7383513.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(4868..5053)
                     /locus_tag="RJ285_000715"
     CDS             complement(4868..5053)
                     /locus_tag="RJ285_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HDV7383514.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(5055..5600)
                     /gene="rplE"
                     /locus_tag="RJ285_000716"
     CDS             complement(5055..5600)
                     /gene="rplE"
                     /locus_tag="RJ285_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDV7383515.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(5604..5837)
                     /locus_tag="RJ285_000717"
     CDS             complement(5604..5837)
                     /locus_tag="RJ285_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDV7383516.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(5837..6205)
                     /gene="rplN"
                     /locus_tag="RJ285_000718"
     CDS             complement(5837..6205)
                     /gene="rplN"
                     /locus_tag="RJ285_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDV7383517.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(6205..6456)
                     /gene="rpsQ"
                     /locus_tag="RJ285_000719"
     CDS             complement(6205..6456)
                     /gene="rpsQ"
                     /locus_tag="RJ285_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDV7383518.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(6466..6651)
                     /gene="rpmC"
                     /locus_tag="RJ285_000720"
     CDS             complement(6466..6651)
                     /gene="rpmC"
                     /locus_tag="RJ285_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDV7383519.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(6638..7063)
                     /gene="rplP"
                     /locus_tag="RJ285_000721"
     CDS             complement(6638..7063)
                     /gene="rplP"
                     /locus_tag="RJ285_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDV7383520.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(7066..7767)
                     /gene="rpsC"
                     /locus_tag="RJ285_000722"
     CDS             complement(7066..7767)
                     /gene="rpsC"
                     /locus_tag="RJ285_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDV7383521.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(7767..8210)
                     /gene="rplV"
                     /locus_tag="RJ285_000723"
     CDS             complement(7767..8210)
                     /gene="rplV"
                     /locus_tag="RJ285_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDV7383522.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVVVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKAEEKKTVAKKAPAAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            complement(8221..8502)
                     /gene="rpsS"
                     /locus_tag="RJ285_000724"
     CDS             complement(8221..8502)
                     /gene="rpsS"
                     /locus_tag="RJ285_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDV7383523.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(8504..9334)
                     /gene="rplB"
                     /locus_tag="RJ285_000725"
     CDS             complement(8504..9334)
                     /gene="rplB"
                     /locus_tag="RJ285_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDV7383524.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVSAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(9336..9617)
                     /locus_tag="RJ285_000726"
     CDS             complement(9336..9617)
                     /locus_tag="RJ285_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDV7383525.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLENTEA"
     gene            complement(9620..10234)
                     /gene="rplD"
                     /locus_tag="RJ285_000727"
     CDS             complement(9620..10234)
                     /gene="rplD"
                     /locus_tag="RJ285_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDV7383526.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESITKEG"
     gene            complement(10231..10806)
                     /locus_tag="RJ285_000728"
     CDS             complement(10231..10806)
                     /locus_tag="RJ285_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDV7383527.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(10816..11127)
                     /gene="rpsJ"
                     /locus_tag="RJ285_000729"
     CDS             complement(10816..11127)
                     /gene="rpsJ"
                     /locus_tag="RJ285_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDV7383528.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(11325..12086)
                     /locus_tag="RJ285_000730"
     CDS             complement(11325..12086)
                     /locus_tag="RJ285_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HDV7383529.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVQFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(12121..14115)
                     /locus_tag="RJ285_000731"
     CDS             complement(12121..14115)
                     /locus_tag="RJ285_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HDV7383530.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(14084..14884)
                     /gene="rsmA"
                     /locus_tag="RJ285_000732"
     CDS             complement(14084..14884)
                     /gene="rsmA"
                     /locus_tag="RJ285_000732"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDV7383531.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            14964..15500
                     /locus_tag="RJ285_000733"
     CDS             14964..15500
                     /locus_tag="RJ285_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDV7383532.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLSQLYFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            15524..16594
                     /gene="rlmN"
                     /locus_tag="RJ285_000734"
     CDS             15524..16594
                     /gene="rlmN"
                     /locus_tag="RJ285_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HDV7383533.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     NLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMSINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            16591..16689
                     /locus_tag="RJ285_000735"
     CDS             16591..16689
                     /locus_tag="RJ285_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383534.1"
                     /translation="MTMLDIFEIIFITAVVIIGFGGIVFVVTKEKK"
     gene            complement(16703..16779)
                     /locus_tag="RJ285_000736"
     tRNA            complement(16703..16779)
                     /locus_tag="RJ285_000736"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16743..16745),aa:Met,seq:cat)
BASE COUNT         4940 a         3171 c         2473 g         6218 t
ORIGIN      
        1 ttttaagtaa ttttaaatac aaaccataat ttttggagta taataaaata aaaaaggtaa
       61 aaattatgaa tgacaaaatt tataaatttc atccaaatga cacaaaaatg gataaaaaaa
      121 taattcaaat tactgaaaag tccggattta aagtagctgt gttttctatg gctgctatga
      181 ctatgctagg aagtgtggtc atttcatctg ctctgcctgc tatcaacaga cattttgaag
      241 aacttttaac ccaaagtggc gctactcttg cttcaagttt cacattagct catcttgata
      301 tacttgttcg cttagtttta accatccctg ctatttttgt tgtcatttta tctccatttg
      361 ctggtatttt aatggataaa tttggcaaat taaaattcat tcttccagct atggtggttt
      421 ggactatttc tgggataagt ggctttttct taaatgatat ttatgctata ctgacttcaa
      481 gagctatttt tggtatggca actgctttta taatgacagg cgcttcggct ttgcttgggg
      541 attattatag tcgtggtggc tttaatcgca gagaaaatgc tttaagtctt caaggatttt
      601 tttgtgcagt agggggtgct gtttttattt ctattgcggg atttgtttca agttattctt
      661 ggcgttatcc ttttttggta tatggacttg gaattttaat taccttaatg gctatcattt
      721 atctttttga acctagaaaa tttaaattct ataatcatac aaaaatagaa acaaaaacaa
      781 attattggca atttttccct atctatttta taggtttttt tatcatggta gtttattata
      841 tttcgccaac tcaacttcct tactatatag aagaacattt gggattggat cctaaatata
      901 taggtatttc gatgtctgta tctgcactat gttatggttt tttctctcta agctatagat
      961 atattataaa attcttaagt attaaaacta tttatgtttt aactcttttt atcgtatctt
     1021 gttctttttt gctgcttttt ttagtagata gctttttcac agttttaatc gccttagctt
     1081 tgcttggaat gggtggaggt attatgcttg taaataatac ggcttatctt ttttcaatct
     1141 gtcctgaaaa tgctcgctct agggcttatg gaattttagc aagttgtata tttttaggac
     1201 aatttttaag tcctattatc tctcaaccta tcgttagaca aatgggtctt gtagatgctt
     1261 ttttaatatg gtcaatagta atttttatag tgtgcattgt gtttttattt ttaaagcaaa
     1321 aacctagaat aaattagcaa gaaaaatctt gctaatttta tttattacaa acctaccgca
     1381 cttaaagttt ggtatttact catataaatt tgagcttcaa tttttctcat cgtatcaagt
     1441 gctacttgaa ctacaataag tacagaagtg ccgccaaaat gaaaaggcac acccataaat
     1501 ttcaccaaaa cccaaggtaa ggttgcaaca agccctaaat aaatagaacc tgataaagtt
     1561 aaacgagaag ccacttcgtt aagataactt gaagttcctt cacctggacg aattccaggg
     1621 ataaaaccgc cttgtttttt caaattttct gctatgtctt tagcgttaaa tacgatagaa
     1681 gcataaaaat aagcaaagaa aattacaaac aagaaagtta gaacatgaaa caaataacca
     1741 tttggattta aaaagtcatt aatggcttgt agataaggat ttgtactagt ttgtaaaatt
     1801 gttgttggaa acatcaaaat cgcactagca aaaatcggtg gaataacccc actaagattg
     1861 agtttaatag gaatataatt cataatgcgt ttgttttgat tttgcattac aactttacga
     1921 gaataagaaa taggaattct tctttctcca agttctatat aaataatcac ccctatggtg
     1981 attaaaatca aagcaaaaat tgcaaaagcg gttaagaaat tcatctcgcc tgaattgatt
     2041 tgtcctacag ttcctgaaat cgctcttgga atacctgaaa caatacctgc aaaaatgatt
     2101 aaagaaatac catttcctat acctctttgt gtgatttgtt cgccaagcca cattaaaagc
     2161 atagttccag caagcataga aatagcacaa agtgcgataa acatatttaa atcttccacc
     2221 attatagccc ctgcaccacc acgaccgtgc aagctttgca aacctatagc aacgcctata
     2281 ctttgaacca aagtaatcac aatagtcgca taacggataa tttgcatata tttttgcata
     2341 ctatcacgct cttttttcat cttaccaata tttggaaaag ttgctgcaag aagctccata
     2401 ataatagaag cagtaatata aggcataata cctaaagaaa tgatagaaaa gcgttcagcc
     2461 gctccaccac taaaaacatt aaataaaccc aaagcattgt tttgattgtt attaaaaaat
     2521 tccgcaatca catcagcatt gacgccagga actggcacat aagccagaac cctataagca
     2581 aataaaaatg ctaaggtgat taaaatctta ttcgtcaatg ctctattcat tattttgatc
     2641 cggtgacgct aatattctcg tctttgattt ttggtactaa gtcttttgca cttgcaccaa
     2701 ttaatttgat tttattcaca gattttgaaa ttttgtgaac acttttaatg ctctcaaatg
     2761 taatttcact aagctctttt acagctgtga ttttttcaac attgatcaca taaggttttt
     2821 gaattttaga agtaaaacct acttttggta gtcttctttg aagtggttgt tgaccccctt
     2881 caaaacctct tttttcatta taaccttttc tagcagtttg acctttaccc cctttagtag
     2941 cagtcttacc catgccagaa ccttgaccac ggccaattct tttagtttta cgcgttgaac
     3001 ccgctgcttt tgttaaattc atcttcttat ccttttaaca ttgttaaagc tttgattgta
     3061 gcacgaacca cattagctga attatttgaa cccaaagact tggttaagat gtctttaata
     3121 cctgcaagtt ccacgatagg gcgtgtagaa ccacctgcga taactcctgt accttcgcta
     3181 gctggtttaa gtaaaattct acttgcgttg tatttcacct ctacatcgtg agcgatagtt
     3241 gagcctttag ttttaacttc aacgatattt ttaaacgcat cgtcaacagc tttacggatg
     3301 gcatctggaa cttccttagc cttaccataa ccaacaccta ctaaaccttt gcggtttcca
     3361 acgataacta aagcagtaaa tctaaatctt ctaccacctt taacaacctt agtaactctg
     3421 ccgatatcga cgattacttc ttcaaattct tctctattat atttttccat cgatttaccc
     3481 cttatagcct aatgccattt tctcttaaag attcagccaa tgctgcgata acaccatgat
     3541 atacataacc atttctatca aaaacagctt gttctatctt tttagctttt aaagttttag
     3601 caaattcagc agcgattttt ttagcacctt ctttatttgc tttaacgcca agtttgcgtc
     3661 catcaactgc tgctaaagtt acagctttta catcatcaat cgcttggata tatagagttc
     3721 tgtttgattt aaatacagaa attcttggaa aattttcaca acctgaaatt ttcgctctaa
     3781 ttcttttttt tcttttgatt cttaaagtta gttttctttt taatacattt gctctcatat
     3841 tctaccctta cttcttagat gtcttaccag ctttgcggat aatgcgttca tcagaatact
     3901 taacgccttt tcctttatat ggctctggtg gtctaaattc acgaatttga gcagcaactt
     3961 gacctacaac ttgtttatca cttcctttaa ctgcaatagt atttttatcc actacaattt
     4021 caattccttc tggaatatca taattaatag gatgagaaaa accaaggctt agttctaaaa
     4081 ctttaccttt taaagctgct ttataaccaa ctccattgat ttcaagagtt tttgaaaaac
     4141 cttgagttaa acctacaacg atattgtaag ctaaagctct gtaagttccc caataagctc
     4201 tactttgtct gtcttcacct tttggagaaa aaagaatatt attatcttta atctcaacat
     4261 ttacatttgc tttagtatca agttcttttg ctaaatttcc ttttttaaat ttaagcaaat
     4321 ttccttctaa ttttacttct actcctgctg gaatagcaat cggttgttta cctatacgag
     4381 acatattttt cctttttatt tgtctaggat atttctactt ttttaaaaga atggataccc
     4441 aatgccataa aaagcagatt ttttaccaaa tggtacataa aatttcgccg ccaacacctg
     4501 ctttataagc ttcatcatta gctaaaacgc catgacttgt gctaactacg atagtaccat
     4561 aaccattttt aaaacgcttg atttcatctt tacctttata aacacgacga ccaggcttag
     4621 aaattctttt aagctcattg ataacactct tacctttttc atcgtatttt aaaactacat
     4681 tgataaattt ctttttatct tcttcaataa cattaaaact ctcaatatag cccttagctt
     4741 gaaaaattcc aactaaagct tctacaactt tagaatgtaa aagcttggtt gtttcaagct
     4801 ttctcattcc tgcatttctg atacgagtga gtgaatctga aataatatca tttatcatat
     4861 tttatcctta ccaacttgct ttcttaagac ctggaatcaa accttcgttg cccatttttc
     4921 ttaagcaaac tctgcaaatt ccaaaatctc tataaaccga atgcggacgc ccacaaattt
     4981 ggcatcttgt ataagctcta actttaaatt taggcttgcg tgccgctttt gcaatcattg
     5041 attttttagc catcttactt tccttttgta aatggcacac cgataagttc taataacttt
     5101 tgtgcctgtt tgtcattttg tgctgttgta actatagaaa tgttcatacc atgagttctt
     5161 aaaattttat catactccac ttctgggaac atcaactgct catcaagacc gaagttatag
     5221 tttccgcgtc catcaaaacc atctctactt aaacctctaa agtctttcac ccttggcaaa
     5281 gcaatagaaa ttaatttatc aagaaaagca tacatatttt cttttcttaa agttaccatt
     5341 acacccacag gaaaaccttc gcgaacttta aatcctgcaa ctgatttttt agctttagta
     5401 atcacagcct tttgtcctgc aattaaagaa atagtatctg caacattttg caatactttt
     5461 tgatctttag ccaactcacc agcacctacg ctgataacta ctttttcgat cacagggata
     5521 agcataggat ttttaatatc aaattcttta accaatgcag gtttaatgct ttgattatat
     5581 ttttctttta atctcatcat cgcttactcc tgaacttttg ccacattgga aatatccatt
     5641 ggcatttctt tattgataaa accaccattt gggtttttct cactcggctt aatagctttt
     5701 ttagcgattt tacatccttc aactaccact ttaagtgttt ttggatatac cgctaaaact
     5761 ttacctgttt tacctttatc atcgcctgtg ataaccttaa cgctatcacc ttttttgatt
     5821 tttaatttaa ccgccattat aatacctccg gtgctagtga aacgattttc ataaagccac
     5881 catatctaac ttctctgccc actggcccaa agatacgagt tccgataggc tctcttttgt
     5941 tgtcaagaat aaccgcagca ttttcatcaa aacgaatcaa agaaccatta tctctatgaa
     6001 tttctttttt agttctaacg ataaccgctt ttaccacttg acctttttta acttttccat
     6061 ttggtaaagc ttttttaaca gatgcaacga ttacatcacc tacggtagcg tatcttcttt
     6121 tgctaccccc taaaaccttg atacacatta attcttttgc accgctatta tcagcaactg
     6181 caagtcttgt aaaactttga atcattactc aactcctgta gctaatacag attttaagcg
     6241 aaatgatttt ctttttgaaa gtggtctgca ttctactgca acaacagtat cacccacttt
     6301 aacttcattt ctctcatcat gaattagata ttttttaaag cgtttaacaa tttttctata
     6361 tcttggatga accacttttc tttcaaccaa aacacttgcg gttttttcac cagcgatttt
     6421 aacaacaacg ccttgaattt ctcttttaaa tgccattttc tatccttatc ttaaagcgtt
     6481 aattgctgta tttattctag caatgtcttt ttttacttgg ctaatctctt ttggattagt
     6541 aagttgcatt gtttttagct tttgttttaa agtgaataaa agcacctttt tttcttttag
     6601 cattgttgca agctcagctg ctgttttatc tttaatctca gtatatttca ttttggctct
     6661 ctcttgtaac aaacttagtt ttaaatggaa gtttatgcat agctaaagtc aatgcttctc
     6721 ttgccatttc ttcgcttact cctgccattt cataaataat acgacctggc ttgatattca
     6781 ttacccattc ttcaacagca cctttacctt tacccatacg agtttctaaa ggtttttttg
     6841 tcaaaggctt atctgggaaa actctaatcc aagtttttcc ttgtctttta acaaaacgag
     6901 ttaaagcgat acgcgctgct tcgatttggc gtgagttaat gcgtcctgct tcagttgctt
     6961 ttaatgcaaa ttcaccaaaa gtaaattctg ttccacgatt agcataacct ctgttacgcc
     7021 ctttcatcat tttgcgatat ttagttcttt ttggcattaa catgattatt taccccttct
     7081 tgtgcgtctt ggctttttag ctggagcact ttcttcagtt ttttcaggtt gcataccttt
     7141 gtgcaatact tcacctttaa agatccatac tttaacccct atgtttccat aagtagttct
     7201 agcttctgca aaaccataat caatttttgc tcttaaagta tgaagtggaa cgcgtccttc
     7261 aagataccat tctgttcttg ccatttcagc accgcctaaa cgaccagaaa ctgaaacttt
     7321 aatcccttta gcacctgctt tttgcgcacc ttgaattact tttttcatcg ctcttctaaa
     7381 agcaattctt ttttcaagtt gagttgcaac actttcagca gcaagttgag ctgaagctcc
     7441 tgcttttctt tcttctttga tattgatatt tacatcttta ccgattaaat cttgcaattc
     7501 ttttcttaaa ttatcaacat cactaccttt tttaccgatg atgatacctg gtcttgcggc
     7561 aactacagta acgcgaagtt ttttagcagt tctttctact aaaatttgac tgattcctgc
     7621 gtaataaagt tttcttttta agaaagctct gattttgtaa tcttcaccga tattttctac
     7681 taaatttgct ttagtcggaa accatcttga ttcccaattt ctattgattc ctagtcttag
     7741 accaattgga ttaacttttt gtcccattag ctttcctttt tcgctgttgc ttttttagtg
     7801 cttgttgttt ttttagctgg agcttttgtt gtagtagtct ttttagctgc tggagctttt
     7861 ttagctactg tttttttctc ttcagctttc acttctgctt ttgccacttc tactaaaata
     7921 tgtgaagttg gttttctaat acgacttgca cttcctctag ctcttggtct aaatcttttt
     7981 aataccgcag ctgcgtcaac acgacaactt tttacaacca cttcgtttgc ttcaaagcca
     8041 ccatttgcta ctgcacttga aattgcattt gcgatgtatt ttgcaccttt atttggcata
     8101 aattttaaac tagccatagc taattctgca ttcatcccct gaacttctct agcaatcaat
     8161 cttgctttag ttggagataa tcttatgaat ttaattaatg ctttactcat atcttatccc
     8221 ttacttacca attttctttt gcacagagcc tttatgccct ttgaatgtgc gtgttggagc
     8281 aaattcacca agtttataac cgatgtgatt ttcagtaata taaaccggaa tgaagctttt
     8341 accattatga acattaaatg taagtcctat catatcagga gtaattgtgc ttcttcttga
     8401 ccaagtttta attggtttat tatcattagc ctttttagca gcgatgactt ttttcattac
     8461 atgatcatca acaaaaggac ctttttttag tgatctagcc atcttacttt ccttttcttc
     8521 ttgaaattat tagcttatcg ctagcctttt tacgacgagt tttcgcacct ttggttggtt
     8581 taccccacgg agttactgga tgacggcctg aatttttctt accttcaccc ccaccgtgcg
     8641 ggtgatctac tgggttcatt gcagaaccac gagtttgcgg gcggatacct ctatggcgat
     8701 ttctacctgc tttaccgata gttacattag cccattcttc atttccaact tcgccgatac
     8761 ttgccataca ttcagctaaa acttgtctca tttcgccact tgcaagtctt aaaataacat
     8821 atttttcttc tttacccata agttgtgcat aagcacctgc ggaacggatc atttgaccgc
     8881 ctttacctgg ttttaactca acattatgaa caatagtacc cacaggaatg tttttaagtt
     8941 tcattgcatt gcctggttta atatcaagtc cgctttcagc agctgaaact atatcaccaa
     9001 cgcttaatcc acgtggttga agaatatatc ttttttcccc atctttataa gcaatcaaag
     9061 caattctaca atttctatat ggatcatact cgattgcttc tactttgcct tctataccga
     9121 atttacgacg tttaaaatca ataattctgt aaagtttttt agcacccgct tctttatgac
     9181 gacttgtaat tcttccatag ctgttacgac ccgcgtgtgc tggaagttta acaagtagtg
     9241 agcgtacact tggtttagct gtaatatctt cagaacttaa acctgtgata tatcttctac
     9301 ttggagtata tggtttataa gttttaattg ccatcttaag cctccgtatt ttctaagcta
     9361 acaccttcag gtagcttaac atagaatttt ttgtaatcgt ttctttgacc taaacgacct
     9421 ctaaaacgct taacttttcc atccattctt aatgaattga tgctttttgg agttacacca
     9481 aaatactctt ttaaaaccgc ttttaagcct gttttagtca tctttggtga agtttgaata
     9541 actacgacac cttgctcttg caaattcaaa cttttttctg tgtaaagtat agtctttata
     9601 tcagtaatat ctgccataat tatccctctt ttgtaataga ttctaacgct gatttttcta
     9661 tgataacagc attaaataca gatactaaat aagcatttac ttcagttaca tcaactacat
     9721 agcaatttgc taaatttctg taagctaaaa gtgttttttc atctagtaaa tctttaacga
     9781 ttaaagcatc tttgacgcca agttttttaa tcacagcgtt tgcatctttt gttttaccac
     9841 tttcaatagc caaagaatca gcagtaaata acgctccctt agctgcttta tctgctaaag
     9901 ctctttcaag cgccaatctt ttttgttttt tatttacttt ttggaagtag tttctttcat
     9961 ttgttggacc aaaagcaacc gcaccgccta cccaaacgtt agttcttgtt gaacccgctc
    10021 tagcaccgcc acgacctttt tgtctccaag gttttttacc accaccactt acatcacttc
    10081 tacctttagt atgagctgta tttgctctta aacttgcaag gtaagatttt acatataagt
    10141 aaagattgtg tggatttact tccgcatatt ttgaaggtaa atcaagttca cctgcttttt
    10201 ctaatttatc atttaaaaca actactttac tcattttgca atccttattt tacccatagc
    10261 accattataa cctggtactg cacctttaac tactaaaatt ttgttttcag catcataaga
    10321 tacaacttcg tttttaacgg tcactttagt atttccatag tgtcctgcca ttttcatacc
    10381 tggttgaaca cgacctggcc attctctatt gccaatagat ccgtggcgtc tgtgaaatct
    10441 agaaccgtga cttgctggac cccctgcgaa gttatgtctt ttcataacac cgctataacc
    10501 tctaccttta gtgttaaagc ttacttttaa aatttttgct tcatttaatg gagtttcatc
    10561 taaatctcct gcttcagtat ttgctacttc taaagtcgca aatctattgt attctgcaga
    10621 aagattatac tttttttgtt gtcctgcgac acatttatta cttgctttac cttttggata
    10681 tgctactaaa gcctttccgc cttcaacttc acatactttt gcatttacaa ctcttagtaa
    10741 agttacagcg atacttggat tagtaattgt tctgctcatt ccgatttttt ctacaatata
    10801 ttccatatct tatccttact tacccatagc tcttacttca acgcttactt ctggcgctaa
    10861 atcaagctta gttaaagaat caactgtatc tggagtcgct gctactatat ctagcatacg
    10921 tgcgtgaatt cttatttcaa actgctcacg agaatctttg ttaatgtgtg gagattttaa
    10981 aactgtatag cgtttgattt tagtaggcat tggtatcgga cctctgatat ccgcacctgt
    11041 tcttttaaca gcttctacga ttgctgcaac tgttctgtct agtactcgat ggtcataagc
    11101 ttttagctta agcctaattc tttccataat atttccttta aaaagaactc gttagttaaa
    11161 aactaaccaa tttataaaaa ttgaaatgag agtatataaa atcttgtttt caaagtcaag
    11221 gaatttgatg aaatttttct attattttcc ttttaaaaag gataaaaata gaatttttag
    11281 aatttaaaaa ttatcattat tttttaaatt tttgcatata atggtcaata tcttatttca
    11341 ttaaatttca aaaaatctct taatttttca tattctccat tttccaaata gcgatgtttt
    11401 cccgccttta acataccaag atctaaagcc ccaaaagcaa cacgcttaag atccatgact
    11461 tcaagatcaa aatgtccaaa aaagcgtcta agctctctat ttttaccttc atttataacc
    11521 actctaagct tagtataacc tccacttgat ccaaaaattt caaagtctat aaaaggagca
    11581 aaactcatag aggtgatttt ggtttttgcg tgtgcgcctt ttttttcatt tttaatctca
    11641 agcccatttt gcatggcttc gatgacttgt ttgctcaccg tacctttaac tttaaggtag
    11701 tattctcttt ctaaatcgct atgcattaaa gcatcagcaa tcacaggaga atctgtaagc
    11761 aaaagcaagc cctcgcttgc ataatccagc ctacctacgc taagccaagt actaaattgt
    11821 cttggcaagg tatcgtatat agtttttctt ccacgatcgt cttttttact gacaatttca
    11881 cctttttgtt tatggtagat tatcacgcta aattgcgttc ttttttgcac tcttttgccc
    11941 ttaacaaaga ctttatcatc aaattgaact tcatcgctta aaagggcaat tttgttgttt
    12001 atttttacta agccttgttt gataagttca tcagcttcac ggcgtgaata acgagtgtta
    12061 tgggatataa atttattaat tctcatttga tcttccttaa aagggcgttt ttgccctttt
    12121 ttacattaca aaaatagttg gaactatggt tgggtatttt ttaatctttc taaagatatg
    12181 ttttcttaag acttggcgga tttgattttc taaaaatctt ggatcattga gtacttcatc
    12241 tttaacattg atgaaaaatt gtcctaaaac ttcagccata tctttgctaa aagcatgatc
    12301 gtgtttgtca gctactaacc catagctaaa tactcttggt ttattgatca gtgtttttgt
    12361 ggctttgtca atttgtgcga taataaccac tatgccacta tctgcaagtt tttggcgatc
    12421 tataactaca tcatcggcga tttgtttgtt gatttgatta tctacaaaaa ctttacctgt
    12481 ttttacggtt tttatgcgtt tgacatattt ttggcaaagt tctacttgat cgccatcact
    12541 cataagataa atatttcttt cagggatacc gcacttcatc gctgtttctt tgtgtttagt
    12601 gatgtgattg tattctccat gaaccggtaa gaaaaattta ggtttggtaa gggttagcat
    12661 aagtttttgc tcttctatac tagcgtgtcc gcttacatga atttcactaa attcttgata
    12721 cgctacttta gctcctgctt ttaaaagata gtcaagcacc gcagaaacac ttgcttcatt
    12781 tcctggtatg gctttagctg aaataatcac ttgatctgta ggtttgattt ttataaattt
    12841 atgctcatca gttgccattc tataaagcgc actcatggtt tcgccttgac ttcctgtagt
    12901 tacgataagc acttcattgt ctttatattt gcttacttca tcagcatcga tgaaaatttt
    12961 tctatcaagt ttgatgtagc ctaattccat agtggtataa agatttcttt ccatagaacg
    13021 accgatcaca caaacttttc tgccgtattt taaaccataa gtgatagcct gataaacacg
    13081 gtggatatta gaactaaaag tactcatgat caccctgcct ttggtacgtg caaaaatttg
    13141 atcaaaagtt ggccctacag agctttcact ttttgtataa ccttctttgt acgaatttgt
    13201 actatcgctt aaaagacata aaaccccttc ttctccataa tgtgccaaac gtcctaagtc
    13261 tgttggatag ccatcgattg gggtttgatc aattttaaaa tcacctgtgt ggataatagt
    13321 tcctgctttt gttttgatcg caagtgctga agcatcaatg atagaatgtg tgatatgaat
    13381 ccactctata tcaaattcgc ctatctcata aacacggcgt ttttctacag ggcgaaacca
    13441 tttgcgttct gcttttaagc catgttcttc aaatttgttt gaaatcattc ctaaagccaa
    13501 aggtgtagcg tagataggaa attggaattc tttaaagaaa taaggcactg caccgatatg
    13561 atcttcgtgt gcatgagtga tcactatacc acgaatttta tctttaattt ttcttacata
    13621 gtcaaaatca gggatgataa tatctacccc atgcatagtt ccatcaggaa aactcatacc
    13681 tatatctact ataattgcat ctttattggt ttcaaaaaca ctgatatttc caccaatttc
    13741 tcctaaacct cctaaaggag tgatgcggat tttatgctcg ctagaattat tatattttaa
    13801 agggtgtaag cggttttcat gtgaaacacg gttagcttct atgcattctg caagagcgat
    13861 ttgccaatct tcattacctg tgagttttga aggaagattg cgatttttct tctttttttt
    13921 ctcagtttta ttttctgagt tttcagaatt ttccttgttg gaattttgat caatttttgg
    13981 agtatcattt tcattttgca aagaatcagc taattttttt ctacgatttt tatatttata
    14041 gcgtttattg ttttttgaat ttgagttcgg attttgttcg tttttattta tctctttgtt
    14101 ttcgtccata ttcatccttt aatttgtcat aaattttaag gtataaatca acgcaaattt
    14161 catgtggtct gatgttttct tttaagccaa gagtgcttaa aacttctaaa acttttgctt
    14221 tatatgtttt taaatttcct aagagttgtt ttctaggagc tttaaaacaa tcttttagaa
    14281 aatttttgaa attttctatt tcgcaaagtt catcaaaatc cttagtttta atcaaactca
    14341 tcaccgctga cataactttt ggtggaggat taaaacattg tggatcaaca tcaaaaagta
    14401 tttttctttc gcaaatcatt gcacttaaaa cacctaagga agaaaactca ctatttcctt
    14461 ctttagcgca gaatttttca gccatttccc tttgtaccat tacaataagc cctagacaat
    14521 ttttatcttc taaagctttt aatataatgt gacttgcaac ataataaggc aaatttgcaa
    14581 ccaaaaaata tggtttttca tcaagactag gattaaaagc ttcgcttgcg tcttgatgga
    14641 tcaagttaaa ttttccacat tcaagttctt tttgaaattt cttttttaaa ataggtatga
    14701 gatcattatc gatttcataa gcttttactt gagaaatttt taaaagttct tgcgttaaat
    14761 cacctaagcc aggcccaatc tcaatgatat tgttcatctc tttgggtatg gcttggatga
    14821 tttttgctaa tacgctttta tcgattaaaa aattttgtcc gtattgtttt tttgctttaa
    14881 ccataagaaa taattttatc taaaaattct taattaagtc tttttaggta gaattatttt
    14941 tgtaaaattt cataaggatc aaaatgattg tttgtgcggg tggaaatgaa aatttttctt
    15001 ttgcaaaagc tataggcata ggtttggttg agtcagcttt tcatttgagt caactttact
    15061 tcaaagaaaa accatcaaaa cttatattta taggaacttg tgggctttat gataagggag
    15121 agattttaga aatttataga agttcgcacg cttttaatgt agaattttct aaaatttcac
    15181 atgcatttta tactcctgca aaatatgaaa tttgcttaga aaaagaaaat gtttctcgtg
    15241 aaacaataaa aatcaattct tcaaattata tttgtcaaaa ttcaaaagca gcaaaagaat
    15301 tttcaaaatt aggttttttt gcagaaaata tggaagcctt ttctgttttg agcgtagcta
    15361 aaaatttaaa tattgatgca gagtgtattt tgtgtgcaac aaatttttgc aatgaaaacg
    15421 ctcacgaaga ttttataaaa aatcatcaaa aggcaaaaga aaaattagaa gaatacttaa
    15481 aaaaatatca ttatatttaa aaattcaaaa aaggaaaata attttgaaag agcttgttaa
    15541 tattttagat tttttacctg aagaattagg agaaaaaatc aaaccgatgt ttcgcgtgaa
    15601 acaaatttat caatggattt atcaaaaata cgccaataat ttttccgata tgtcaaattt
    15661 accaaaagat ctacgtttag aacttgcgca aaattttcat ttctctcccg taaaatgtgt
    15721 taaaaatgag caaagtaaag atggaagtat aaaatatctt tttgaactcg ttgatggttt
    15781 aaggatagaa agtgtgcttt tgcctatgaa agaagaaaaa atagacgcag aaggcaaaag
    15841 aatttctcat gcgagatata ctatctgtgt ttcttctcaa gtaggttgta aaagtggatg
    15901 tagtttttgt cttactgcca agggtggttt gaaaagaaat ttaagtgcag gtgagatagt
    15961 cggacaaatt ttatggatca aaaaacaaaa caatatccct tatgaacgcc gtgtaaatat
    16021 agtatatatg ggtatgggcg agcctttgga taatcttaaa aatgtttcta aagcggtaaa
    16081 aattttagcg caaaatgagg gacttgctat aagtcctcgc cgtcaaacca tcagtactag
    16141 cggtttggca aaacaaatca aagaattagg tcaaatgaat ttaggtgttt tacttgctat
    16201 atcattgcat gcggttaatg atgagcttcg aaccgaactt atgtctatca ataaagctta
    16261 taatatcgct gcgattatgg atgcggtgcg tgaatttcct atagatcaaa gaaaaagagt
    16321 gatgtttgaa tatcttttaa ttgatggtat caatgataag cttgaacacg ctaaagaatt
    16381 agtcaagctt ttaaatggta ttaaagccaa agtgaattta atactcttta atccacatga
    16441 aggaggttta tataaacgcc ctagtttaga aaacgcgatt aaatttcaag atttactcag
    16501 caataaaggt gtaacttgta ctataagaga aagtaaaggg cttgatatct cagctgcttg
    16561 tggacagctt aaagaaaggg caaaagaaca atgacaatgc tagatatttt tgaaatcatt
    16621 tttataacag ctgttgtaat tataggtttt ggtggaattg tttttgtagt aacaaaagaa
    16681 aaaaaataat tattacactt aatggtgtca agggggagac ttgaactccc gacctccggc
    16741 ttatgagacc agcgctctaa ccagctgagc taccctgact aaaaataaaa atataattat
    16801 ac
//
LOCUS       DAPIWU010000029        16592 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.029, whole genome shotgun sequence.
ACCESSION   DAPIWU010000029 DAPIWU010000000
VERSION     DAPIWU010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16592
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.029"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..392)
                     /locus_tag="RJ285_000737"
     CDS             complement(<1..392)
                     /locus_tag="RJ285_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDV7383535.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKDLKISHFEKVFEFGCG
                     RGEFSKKLQNFITFNKYLKNDILNFKENSNILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIILSLRDMLNQNGILLLSTFA"
     gene            complement(389..1000)
                     /locus_tag="RJ285_000738"
     CDS             complement(389..1000)
                     /locus_tag="RJ285_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDV7383536.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASYPSHFSHLKSDKNVILFYDY
                     ENFDLNFNFKAFDELFLIAFSIGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPT
                     IFKKTLQNFKLEHFKEALFKERKSLAKDFIFKDEKSLKIELEKLFDFALTKQEENLLW
                     DKVYSSKEDEIFPPNALKNSFKNLIFLDEPHFAFFHFKTWDEL"
     gene            complement(997..2139)
                     /locus_tag="RJ285_000739"
     CDS             complement(997..2139)
                     /locus_tag="RJ285_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HDV7383537.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDQKLLNLAGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEELESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLADKFIHASMIDGLRLGEADFFRFHHKNMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDKEGL
                     GLVKKLALENEVDFLVFTFGKAIASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHTVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHTGLNTEELERIIELL"
     gene            2207..3490
                     /locus_tag="RJ285_000740"
     CDS             2207..3490
                     /locus_tag="RJ285_000740"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDV7383538.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKITNAIKKQVDKLEHVILAGFTHEPIIKLSARLCEKV
                     GHDFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(3477..4082)
                     /locus_tag="RJ285_000741"
     CDS             complement(3477..4082)
                     /locus_tag="RJ285_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDV7383539.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(4092..4406)
                     /locus_tag="RJ285_000742"
     CDS             complement(4092..4406)
                     /locus_tag="RJ285_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7383540.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(4409..4747)
                     /locus_tag="RJ285_000743"
     CDS             complement(4409..4747)
                     /locus_tag="RJ285_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7383541.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            4879..5415
                     /locus_tag="RJ285_000744"
     CDS             4879..5415
                     /locus_tag="RJ285_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HDV7383542.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            5412..5957
                     /locus_tag="RJ285_000745"
     CDS             5412..5957
                     /locus_tag="RJ285_000745"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDV7383543.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            5959..7017
                     /locus_tag="RJ285_000746"
     CDS             5959..7017
                     /locus_tag="RJ285_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDV7383544.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFASAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLVMYYFFPVIARFFNLAIVTFVAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            7061..8269
                     /gene="lysA"
                     /locus_tag="RJ285_000747"
     CDS             7061..8269
                     /gene="lysA"
                     /locus_tag="RJ285_000747"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDV7383545.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYVKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKDECESDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            8271..9038
                     /locus_tag="RJ285_000748"
     CDS             8271..9038
                     /locus_tag="RJ285_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HDV7383546.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAALVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            9026..10099
                     /gene="pheA"
                     /locus_tag="RJ285_000749"
     CDS             9026..10099
                     /gene="pheA"
                     /locus_tag="RJ285_000749"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HDV7383547.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            10089..11183
                     /locus_tag="RJ285_000750"
     CDS             10089..11183
                     /locus_tag="RJ285_000750"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDV7383548.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKKVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDKKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            11235..12917
                     /gene="fliF"
                     /locus_tag="RJ285_000751"
     CDS             11235..12917
                     /gene="fliF"
                     /locus_tag="RJ285_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HDV7383549.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            12917..13945
                     /gene="fliG"
                     /locus_tag="RJ285_000752"
     CDS             12917..13945
                     /gene="fliG"
                     /locus_tag="RJ285_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HDV7383550.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            13953..14783
                     /gene="fliH"
                     /locus_tag="RJ285_000753"
     CDS             13953..14783
                     /gene="fliH"
                     /locus_tag="RJ285_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HDV7383551.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENANISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFAKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            14776..>16592
                     /locus_tag="RJ285_000754"
     CDS             14776..>16592
                     /locus_tag="RJ285_000754"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDV7383552.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNSCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNS"
BASE COUNT         5899 a         2213 c         2955 g         5525 t
ORIGIN      
        1 tttgcaaaag tagaaagaag taaaattcca ttttgattta gcatatctct aagacttagt
       61 ataatgcgtt ttaaatcaag ccattgcaaa gttgcatttg aaacaataag atcaaatttc
      121 tctttactta aatcttgttt tgcaatttca ttcatatcaa aaattaaaat attagaattt
      181 tctttaaagt ttaaaatatc gttttttaaa tacttattaa aagtaatgaa attttgaagt
      241 tttttgctaa attcacccct accacaacca aattcaaaca ctttttcaaa atgtgaaatt
      301 tttaaatctt ttaaaatttc acaaagtttt aaacccatga aatcttgcac ttttgcatgt
      361 ttttcataat cttttgcttt taaaaaattc aaagctcatc ccaagtttta aaatgaaaaa
      421 aagcaaaatg cggttcatct aaaaaaatca aatttttaaa actatttttc aaggcatttg
      481 gtggaaaaat ttcatcttct ttacttgaat aaaccttatc ccaaagcaaa ttttcttctt
      541 gttttgttaa agcaaagtca aaaagttttt caagctctat tttcaaagat ttttcatctt
      601 taaaaataaa atctttggct aagcttttgc gttctttaaa taaagcctct ttaaaatgtt
      661 ctaatttaaa attttgcagg gtttttttaa aaattgtagg atgaattcct tttgatttat
      721 ctatgcctaa atttgtacca tttatggcta ttttttgctt aaaattaagc tcttttaaaa
      781 gtctatttgc cacacaaacc cctatagaaa aagcgattaa aaaaagctca tcaaaagctt
      841 tgaaattaaa atttaaatca aaattttcat aatcataaaa taaaatcaca tttttatcgc
      901 tttttaaatg cgaaaaatga ctaggatatg aagcaaaccc tccaaatacc actataagtt
      961 tttttgaatc aggatttttg cataaaaatt catatttcat aaaagctcta ttatcctttc
     1021 aagttcttct gtgttaagtc ctgtgtgtaa agaaaaacga attctagctg tattttttgg
     1081 cacagtaggt tctttaatcg caggagcaaa aaaaccagct ttttgaagtt tttgtgaaat
     1141 ttctaaggct tttttatttt cacctaaaag caagcaaata atataagcat cacctaaaac
     1201 agtgtgattt ttttcttgca atttactttt aaaaaaagta cttaaaagtt ctaatttttc
     1261 tctttctttc ttaaaataag gcattttttt aaaaataaat tgtgtccaag ctacattaat
     1321 aggtggcaaa gctgtagaat aaataaaagc tctagctttg ttgatgaaaa attttttata
     1381 tttttcatca catattatac aagcacccat ggaagcaatg gcttttccaa aggtaaaaac
     1441 caaaaaatcc acttcatttt ctaaggctag ttttttaaca agccccaaac cctctttatc
     1501 aaaacaaccc acgctgtgtg cttcgtctat ataaagcttg attttatcat aacgtctttt
     1561 aagctcacac aaagttttaa aatcgctaaa atctccatcc atactaaaca aagcttcgct
     1621 taaaacgatg atattttcat aattttcata atgtttttgg attaaactct ctaaatgatt
     1681 catatttttg tgatgaaaac gaaaaaaatc agcctcgcca agtcttaagc catcaatcat
     1741 acttgcatga ataaatttat cggctaaaaa aagcgtctta gaaacgctag aaagtgctgc
     1801 tatacaagag atatttagat gataaccact attaaaatgt aaaatttcct tatctttaaa
     1861 tttagtcttt aaaaaacttt ctaattcttc ataaatttca aaatttccac tcaaacttct
     1921 tgaactcgaa cttgaaaaaa acaaatcttg ctcttttagg gtgtttaaaa actcagcttt
     1981 taactcttta gaagacgcca aataaagata atcatttcct gctaaattta aaagtttttg
     2041 atcttgttta taaacaaatt tattttcatg ttttaaaggc gttagagttc ttagattgtg
     2101 attttgctct agatcttgca aaattttttc aagcttcatt tttttcctgt aaatttaaaa
     2161 atttaaagta ttattttgcc aaaatatttt taaaaaagaa gttataatgc aaaatcaaat
     2221 cttaaaaaat ctcgatttaa aacacatttg gcacccttgc acacaaatga aagatcacga
     2281 aactctacct ttaattccta taaaaaaagc aaaaggtgta tggctttatg attttgatga
     2341 taaagcttat atggattgtg tgagttcttg gtgggtcaat ctttttggtc attgtaatga
     2401 aaaaatcaca aatgccatta aaaaacaagt tgataagcta gagcatgtga tcttagcagg
     2461 ctttacacat gagcccatca tcaagctttc tgcgagactt tgtgaaaaag tggggcatga
     2521 ttttaataaa tgtttttatg cggataatgg ctcaagtgcc attgaagtag cacttaagat
     2581 gagttttcat tatcatttaa ataagggagt gaaaaaaagt aaatttttat ctttaagcaa
     2641 ttcttatcat ggtgaaacct taggagcctt aagtgtgggc gatgttgcac tttataaaga
     2701 tacttacaaa gccttgcttt tagagtgttt aagcacgcct gtgccacaag gcaaagacta
     2761 cactaaagag cttgaaattt taaaagatat tttagaaaaa aatgcaagtg aaatttgtgc
     2821 ttttatactt gaacccttgg tgcaatgtgc aggaaatatg catatgtatg aagcagggtt
     2881 tattgatgag gccataaagc tttgccataa atttggagtg caagtgattt ttgatgaaat
     2941 tgcagtgggc tttggacgca caggaacttt gtttgcctta catcaatgca aacaaagccc
     3001 cgattttatc tgcctttcaa aagggataac gggtggattt atgccacttt ctgtagtgct
     3061 tacaagagat gaaatttata atgcttttta tgatacttat gaaagccaaa aggctttttt
     3121 acattctcat agctatacgg gaaatacctt agcttgcgcg gcagcaaatg cggttttaga
     3181 tatctttgag gatgaaaata ttttagtaaa aaatcaaatt ttaagcgagt ttatcaaaaa
     3241 agaattttca agacttgaaa aatttgactt tttgggtaat tttagaactt gcgggatgat
     3301 cagtgctttt gatattttaa gcaccaagta taaacgcgta ggactttttg tatttcaaaa
     3361 agccttagaa aaaggtttgc ttttaagacc tttagcaaat acgatttatt ttatgcctcc
     3421 ttacatcatc acaaaagaac aaatcgttta tgtactagag agtttagagc agatttttaa
     3481 ggaattttaa gttgtaaaat ttcttgcatt tgctctttaa aatctttatt taaaatgcta
     3541 ttttcatcaa aaaaatcaag attgattata ggaatttttg cataattttt tataaaatca
     3601 tcttgtaaga tatctttttt acccatcatt acaagggcta aaagattgat atttctttgc
     3661 tttaaagctt caatgctaag caagatatga ttaatgcttc caagatagta ttttgctacc
     3721 aaaatcgtag ggtgtttgaa aatattcaca aaatcaatca tagtgtaatt ttcatccata
     3781 ggagaaaaaa gcccacccgc aagctcaata agtaggtttt tgctttttgg taaaatgata
     3841 tctaaggctt tataatcaag cttttctttg atttttccaa gatgaggaga agctggagtt
     3901 tgcaaaaaaa taccttcttt aaaaatcttt gtttttgggc taaattttgc aataaactcg
     3961 ctatctgttg gagttcctgc ttgaatgagt ttaaaataat catagttaaa attcgcacaa
     4021 aaagctgcgc taaaatgtgt ttttcctaca tcagtatgta ttccacttac ataaatttgc
     4081 acaaaaaatc ctcaagaaag aaattttaaa cccgctgtac aagtaataat cacagcgatt
     4141 aaaaaaagtt tcaaaaaact tttactttct ttataaaaaa gcactcctat cattacccca
     4201 ccagcggttc cagctcctgt ccatatagca taagcaacgc tcatagcgat attttgcata
     4261 cttaagctta aaaaagtaaa agaaaatcca aaacacacta tcaaagctaa aaggtaaagc
     4321 ttgtttttag tgcttacaag ttctttcatg atcaccacgc caaaaatttc acaggcagta
     4381 gctaaaaaca aataaaacca ttccataact aagcttcctt gcttacccat ttaagggcta
     4441 taatgcttaa aagtaaaatc gctataagca caagtttaat tatagaaaca gcctcattaa
     4501 aaataaacat ttcatttaaa accactccta tagtgccaat gcctacaaaa acactataag
     4561 taatgcttac ttcaagtctt tcacaagctt ttaaaaaaca agtaaaagaa atacaaaccc
     4621 caatggctgt taaaatatag tgccaaattt ctgtagaata cttaagtcca cttacccaaa
     4681 aacattctat aatcccgcct aagattatta aaaaccaagc tatattgata ttgaattttt
     4741 cattcacatg aagccttaaa ttaacataat ttataaaaca aattatatct taaagaaatt
     4801 aaaagaagct ataaatttac ttttccataa gccaaaatta gatataatca aagctcattt
     4861 tttaagaaag gacaaaagat gttagaaggc atcgttagag agagtatcgg tagaaaagct
     4921 gctaaagctt taaaaagaga tggttatcta atcgcaaaca tctatggaaa aggattagaa
     4981 aacatcaatg ccgcttttaa agtaaatgag tttattaagg aagttcgtaa aaaaactact
     5041 ttaatttttg atgtaaaagt aggttctcaa actttaagcg ttgtagttgt agattatcaa
     5101 aaagatcctg taactgcaga acttaaacat gtggatttaa aagttgcaca aaaaggtgtg
     5161 atttctaaat acatggttcc agttaaaatc acaggaacag ctataggtct taaaaataaa
     5221 ggtgttttaa tccaatcaaa aagaagatta aaagtaaaat gtgcagctga aaatttacca
     5281 aatttcttcg aacttgatgt aagtaaactt gatgtgggtg atgctttact tgttcgtgat
     5341 attgtagttc ctgcgggagt aactatgatt gatgctgata gagtagcggt tgtaggtgta
     5401 gaaaaagcta gatgatttta gtcgtagggc ttggcaatat aggcgtagag tatgaaaata
     5461 cccgtcataa tgtcggtttt atgctaattg acttactttt aaaagaaagc aattttacaa
     5521 atcttacaaa ctctaaattt aaaggagagc tttttaaaat aggttcttct ttacttcttc
     5581 ttaaacctag tacttatatg aataattcag gacttagcgt aaaagcagtg aatgattttt
     5641 ataaatgcga aagaatgata gttatccatg atgatataga tataaattta ggagccttgc
     5701 gctttaaaaa aggcggttca agtggtggac ataatgggct taaaagcata gatactttat
     5761 gtggaaatga ctatgaaaga gtgcgtatag gagtgggaaa gggtgaaaat gtgatttccc
     5821 atgttttagg taaatttaaa tccgaagaag aaataacttt aagcaaagtt ttagagcata
     5881 caaaaaaagc tttgcttgag cttattgaaa atgatgattt gtctgctata tcatccaaat
     5941 acagcctaaa ggcttaagat gtggatattt tttcgtttta tttcagggat ttatttaaaa
     6001 aattttttta ttatattttt ttctttactt ggtttttatt gcggtattga tttactctta
     6061 aattttaaag atctaccaaa agccgcaaat cttgatttgc tttatgttat gtttttatct
     6121 ttttcggcag tgccttatgt attacccatt tctttgattt ttgctttggt agtttctttg
     6181 atttctatga tcagagcaaa tgaatttgta agtctttatg cgttaggact gagtagaaat
     6241 tatgttattt tatttccttt tttatgggct ttattttttt gttgtattta tataggattg
     6301 aattttactt cttttgctta tgcaaatgat tataagagaa atattttaaa aaatggcact
     6361 attatgaatc aaagtggaga agtgtttttg aaatttaaca ataattttgt ttatatttca
     6421 aagataaaca atggacaaaa tagtgctcaa aatataaaaa tttttaatat taatgattta
     6481 aatttaagct cttttgcaag tgctaaaaat gcccattttg aaggtgaaag ctggattttg
     6541 cgagatggta atattacatt attacctaaa aattatgaac ttgctaatga tggtttaaag
     6601 atacaagatt tctccgagct taaatcactt gagggtttta aaccaaagat tatagaaggg
     6661 gttgctagta atagtgatta ttcaatatct gatgcacttg aaagttttga gctttttaag
     6721 gcacaaaatg tcaatacaga tactcttaaa atcaatcttt ataaatttgt ttttactcct
     6781 ttttttgcac catttttaat gcttgttatg tattattttt ttcctgtaat agcaagattt
     6841 tttaatcttg ctattgtaac ttttgtagct tttgtagtga ctttgatgat ttggggagtc
     6901 ttgtttttgc ttactagatt aagcgaaaat agtgtgattg caagtgaaat tggcattgta
     6961 gtgcctatta taattttggg ttgtttaagt gcttatatgt attataagca tcgataaatt
     7021 aagctttgtg tagtaaaatt ataaaaatta aaggttaaat atggattata aacaattaaa
     7081 acaagaattt aatacccctt tttatattta caattttgat ttcataaaag agcgtttttt
     7141 aaatctcaaa gaggctttta aggctagaaa atctcaaatt ttttacgctg taaaagccaa
     7201 ttcaaattta agtttgttgc aaatgcttgc aaatttagat agtggatttg attgtgtgag
     7261 tataggcgag gtaaagcgtg ccttaaaagc aggagcaaaa gcttataaga ttatttttag
     7321 tggagtagga aaaaccaaag aagagttaag acaagcttta gaatatgata ttttatatat
     7381 taaccttgaa agcgaagctg aaatgatgct tttagaaagt gtggctaaag aacttaatct
     7441 aaaggcaaga atcagcattc gtgttaatcc aaatgttgat gcaaaaactc atccttatat
     7501 ttctacagga ttaaatgaaa ataaatttgg tgtcgaaatt gatatagcaa gaaaaatgta
     7561 tctttatgta aaaaattcat cttttttaga gcccgttgga gtgcattttc atataggttc
     7621 gcaactttta gatatttctc ccattcatga agcagcaggc atcgttgcaa aacttgtaag
     7681 agagttaaaa gccttgcaaa tcgatcttaa attttttgat ataggcggtg gtttgggtgt
     7741 ggcttatgaa aaagatgagt gtgaatctga tctttatgat tatgcacaag gtatattagc
     7801 acaacttcat gggcttgatt taactatagg aatggagcct ggaaggtatt tagttgctaa
     7861 aagtggagaa tttgtttgtt cagtacttta tgaaaaacaa aataaaacca agcgttttgt
     7921 tgtagtagat ggagcgatga atgatcttat acgcccaagt ttatacgagg cttatcatga
     7981 aataatctta ccttataatc aagcccaaga gagtttatgt gatgttgtag gtggaatttg
     8041 tgagagtgga gacttttttg ctaaagcaag gtctttgcct agcactcaaa gtggtgatat
     8101 aatggttatt aaaaatactg gagcttatgg ttttagcatg agcagtaatt acaatactcg
     8161 taataaagtt tgcgaattag cccttgaaga aggacaggta agattgatcc gtcaaagaga
     8221 aaattttgaa gatcaaatcg ctttagaaga gaaattttta aaggcttaaa atgttttttt
     8281 tagatgttca agggacttta atttctgatc atgataaatc tttaatccat ggtgctaaag
     8341 aactgatcga ttttttaaat gcaaaaaatc ttccttatct tatcatcact aacaatacaa
     8401 aaaaacttga ttttttagaa aaattacagc aaaaaggatt ggctataaaa gaaaatgctt
     8461 atattgatcc tttcagcgtt ttaaaacacc ttttaagacc ttgtaaagtt gcggcttttg
     8521 gtgcagatga gtttgtaaaa agtcttgaaa atcttggttt tgagctcgat tttgtaaatc
     8581 ctagtgctgc gcttgtggct agttatgatg attttaaatt taaagatttt gccactatga
     8641 tagaattggc tagaagagaa gttagattta tagctatgca cgaaactagt atttataaaa
     8701 aagatggtag gccttatcct ggtgtaggta gcattatggc tatgcttaaa aatgctattg
     8761 attttgaata cgaggttgtg ggtaagccta gcattgcttt ttataaagaa gctttaaatt
     8821 taataagaag acaaaattca aaaatcgatt ttgaagatat taaaatcatt agtgatgatt
     8881 ttaggggtga cttgcttaag gcaaaagaac ttggcatgaa aaccttgcta gttttaagcg
     8941 gcaagataag cgacacaaaa gggcttgata cggatttgct tgatggagtt tatcctagtg
     9001 tttttgagtt tttaaaggat ctaaaatgcc aaatttagaa gaatttagaa ataaaatcga
     9061 tgcggttgat gataaaattt tagatctttt aaatgaaaga atgacttatg ttaaaagtat
     9121 aggtgagctt aagcaaagta gtgggggaag tatttatcgt cctgagcgtg aaagagccat
     9181 tatcaatcgt ttaaaaaatg caaatttagg acttttagat caaaatgcca tagaggcaat
     9241 ttatcaagaa atttttgcag tttcaagaaa tttagaaatg cctcaaacta tagcttattt
     9301 agggcctgaa ggaacttata cacatcaagc agcaagaagt cgttttggtg cgatgagtcg
     9361 ttatatagcc ttggccaata tcgaagatgt ttttaaagag ttaagcaaca aagaagcaaa
     9421 atacggtgtt gtacctatag aaaataatac cgaaggtgca gtgggcatta ctttagattg
     9481 tctaggtaag tataatgagc ttaaaatttt tggcgaaatt tatatggata ttcatcattc
     9541 ttttgtagga attaatgaaa atttaaaaga aatcaaacgc atttattcgc atccgcaagg
     9601 ttataatcaa tgtcgtaaat ttttagaaag tcatgaactt agtgctatag aatttgttcc
     9661 ttcaaaatct acagctaatg cagcttacct agcttcgcaa gataaatatg cggcagcaat
     9721 ttgttctaga atagcggcta agctttataa tgtgcctgta ctttttgata aaatagaaga
     9781 taatgcagcc aataaaacaa gatttttaat tttaagcgat attaaaaatc ctaaaatgcc
     9841 aaattgtaaa acttctattt tagcacacac agcacataaa cctggggggc ttagcttttt
     9901 attagagcag tttaaaaaag aaaatatcaa tcttactaag cttgaatctc gccctgtaaa
     9961 atcaaaagaa tttttacaca gtttttatat agattttgaa gggcatattg atgatgaaaa
    10021 tgtaaaaaaa gccttaaaag atatacaaga gattgtttgg cttggatctt atttatcagg
    10081 agaaaaagat gaaatttaat gaatttttaa atcatttaag caattatgaa cctggaaaag
    10141 atatagaagt tattgctaaa gaatatggcg ttaaaaaagt gataaaatta gcaagcaatg
    10201 aaaatccttt tggcacgcca ccaaaagcta tagaatgttt aagacaaaat gcaaataaag
    10261 cccatcttta ccctgatgat agtatgatag aacttaaaag cacattggct caaaaataca
    10321 aagttcaaaa tgaaaatatc attatcggtg caggtagtga tcaagtgatt gaatttgcta
    10381 tacatgctaa gttaaattct aaaaatgctt ttttgcaagc tggagttacc tttgctatgt
    10441 atgaaattta tgccaaacaa tgtggtgcaa agtgttataa aactcaaagt attactcata
    10501 atttagatga gtttaaaaaa ctttatgaaa cgcacaaaga tgaaattaaa cttatttttt
    10561 tatgcttacc aaacaatcct ttaggcgagt gtttggatgc aagtgaggcg accgagttta
    10621 ttaaaggtgt aaatgaggat tgtttagttg tgattgatgc agcttataat gaatttgcaa
    10681 gttttaaaga tagcaaaaaa catttaaaac cttgcgaatt gattaaagaa tttgacaatg
    10741 tactttattt agggactttt tctaagcttt atggattagg aggtttacgc attggttatg
    10801 gtatagctaa tgctaatatt attagtgcat tttacaagct tcgtgcgcct tttaatgtga
    10861 gtaatcttgc tttaaaagca gcagttgcag caataaatga tgatgaattt gctaaaaaaa
    10921 ctttagagaa taatttttct caaatggaac tttataaaga atttgctaaa aaacataata
    10981 tcaaaatcat tgatagttat acaaatttca tcacttattt ttttgataaa aaaaatagta
    11041 cagatttgtc tgaaaaattg cttaaaaagg gtataataat aagaaattta aaaagctatg
    11101 gtttaaatgc tatacgcatt actataggaa catcttatga aaatgaaaaa ttttttacag
    11161 aatttgataa gattttaaga tagataaatc aaataaaaat atgtaaaatt cgctaaacta
    11221 agggatgaga attaatggat tttaaaaata tgcttcatca aattgggcaa ctttatcaaa
    11281 atttaactcg caagcagcgt atagtgattg ctgcatctat tgtagtagtg gttgggtttt
    11341 tggttttttt agctttattt cgtggaagtg gtagtaatgc aaataatgga tatgcagttt
    11401 tagttgaaaa tgtaagccca agttcttctg ctgcaattgt agctaaactt gaacaaaata
    11461 atattcccta taaattagaa agtgaaaata aaattttagt tccacaagat caggtttatc
    11521 gtcaaagaat gtttattgca agcgaaggtc ttataaaaga tagtcgcgtg ggttttgaag
    11581 cttttgatac tcaagctttt ggagctacaa atgaagagca aaaggtaaaa taccaaagag
    11641 ccatagaagg cgaacttgca agaactattg agactttaga acctattcgt agcgctgttg
    11701 tacacatagc atttcctaaa gatagtgttt ttaccgaaag gcaaattccg cctacagctt
    11761 cagttgttgt taatgttcgc gaaggcttaa agcttactag aaaacaaatt gatggtataa
    11821 aaaatattgt ttcagcggca gttccaaaac ttactaaaga aaatgttaag attagtgatc
    11881 aaagtggtgt gcctttagat gagcaagaag catatgaaga tgacttggtt cgtgcgcaaa
    11941 ttaaatttaa aagtgatcaa gaaaaagctt tagaagataa gattatagaa aatttagctc
    12001 cttttgcagg tggcatggat aaagtaaaag tgagtgtaaa tatagatttt gatttttcca
    12061 agcaagaatc tcaaagtgaa atttatgatc caaatcctat agtgcgtagt gagcaaactt
    12121 taaacgagga aagaacaggt agaaaagatc cagaaattca gggtgttcca ggtgctgttt
    12181 ctaatatagg tcctgttgaa ggacttgaca ataagggtca aattgacact tataaaaaaa
    12241 atcaagttac tacaaataat gaactttcta aaactatcac aaataccaaa aaacaatttg
    12301 caacagtttt acgcacttca gcagctgtta ctatagatgg aaaatatcaa gatgtggttg
    12361 atgaaaatgg ggatgtgaaa agcgaatatg tcccattgac taaagaagag cttgcaagtg
    12421 ttgagagtat agttaaaaat actattaatt ttagcgctac tagaggtgat agtgttgtgg
    12481 tgcaaaattt accatttcat cgtgagtcga ttagagttga gagtaaagtt aaaacttttt
    12541 acaatcgttt tgttgagcca tttattccgc cggttaaata ctttattgca gcgattttac
    12601 tttttatttt ttacaaaaaa gttattgctc catttactca aaaaatgctt gaagatgtcg
    12661 cagcacaaga ggaaatgcag caaggtccaa atgctgtttt agatgatgct gaagatgctt
    12721 tagagaaatt taatgcagca aggaaaaaag ttgaagaaca acttggtttt ggggataact
    12781 tcaatgaaga ttctatccag tatgaggttt tgcttgaaaa attgcgtggt ttggtaagtg
    12841 ataaaggtga ggaaattgca gcacttttgc aaaacttaat tcaaaatgat agcgaatttg
    12901 gcgaaaagga tatgtgatga taaagctaag tgaagaacaa aaaatggtct atgatgattt
    12961 atcgatgcct gagaaggtag caatatttct tatacaactt ggcgaagatg caacaacttc
    13021 tgtgttttca catatggaaa ttgatgtaat cacagaaatt tcacgttata ttgctatggc
    13081 taaaaatgtt gatagatctg tagctactgc agttttagaa gaattttaca ctctgcttca
    13141 atcaaatcaa tatattaaaa gtggtggttt ggaatatgct aaagaaatac tttttcgtac
    13201 ttttggacca gagattgcaa ataaaattct tgaaaaactc actaaaagta tggagaataa
    13261 tcaaaatttt gcttatttgg cgcaaattaa accacagcaa cttgcagact ttattaccaa
    13321 agagcaccca caaaccatcg ctcttatttt ggcacacatg gattctattc atgcggcaga
    13381 aactttagag tattttagcg atgaattaag ggctgaggtg gttataagaa tggcaaatct
    13441 tggcgatatt tctccaagta ttattaaaag agtttctgca gtgctagaaa gcaagcttga
    13501 aagtcttacc tcttataagg ttgaagtggg cggcccaaga gcagtagcag aagtgcttaa
    13561 tcgtttgggt caaaaagcaa gcaaatcaac cattacttat attgaacaaa gtgatgaacg
    13621 cttagcagag actattaaag agcttatgtt tactttcgat gatatacaaa aacttagcac
    13681 tcaggctata agagaaattt taaaagtagc cgataagcgt gatttaatga taggtttaaa
    13741 aggtgcaagt gaagagttaa agcaaaaatt cttagccaat atgtctacgc gtgcaagcga
    13801 agcttttctt gaagaaatgg gttttttggg tgctgtgcgt gttaaagatg ttgaagatgc
    13861 acaaagaaag gttgttgaag tggtgcaaaa acttgcagaa caaggtcttg ttcaaacagg
    13921 cgatgcggat gaaatgatag agtaggtgag agatggttaa tcgtagcaat gtaatttctg
    13981 gtggggcttc tgatcagcat gttgttgaag gatatcgttt taaagttatt tcagaatttg
    14041 ataatcatac aggtgaaaaa aaacatactc aaactccaga tgaagaaaat gctaatatat
    14101 ctttaaatga cgaaaaacca gtcgaagaaa atcaagtcat tgcctctacg caagctgtta
    14161 tggaaactca aattccaaca tttcaaccaa gctttgttga agatttgctt aaaaaaacag
    14221 atgaaatgtc aagcaatatt attaaacttc aaatgcaaat agaaagccaa gagaatgaat
    14281 ttaataaccg cttaaattca gaacttgaaa atgctaaaga aaaatttgcc aaagaaggtt
    14341 atgagaaagc aaaagaagaa tttcaaaaag aattgagtga ttttaaagat aagtatttaa
    14401 aaagtatagc caaactcgat aatgcttgcg aaaatcttga aaatttcata gaaaaaaatg
    14461 agaaagaatt agcagatact gctatagata tcgctaaaga agtaatctta aaagaacttg
    14521 aactaaattc aagtaagata gcttatgctt tggctaaaga tttaatcggc gagcttaagg
    14581 gtgctagtgc aattgagctt aaggttaatg cagaggatta tgagtattta aaagagcaat
    14641 ttgatcagaa tgctcacatt aaaataagtc ttgatgatgc aattagcaaa ggaagtgttg
    14701 ttattataag tgacgcaggc aatatagaat ccaatcttaa ctctcgtcta actaaaatta
    14761 aaaaaatggt gaataatgag taaaaaattt gcccatactc aagaagagtt agaaaagcta
    14821 agtttaaaag aattagaaaa tttagcagca tctatgcgtg aaaaaatcat acaagttgtg
    14881 agtaaaaatg gtgggcattt aagttcaaat ttgggtgctg tagaacttag tatagcaatg
    14941 catttggttt ttgatgcaaa aaaagatcct tttatttttg atgtgtcgca tcagtcttat
    15001 acacacaagc ttttaagcgg aaaagaagaa atatttgata ctttaagaca aatcaatggt
    15061 ttaagtggtt atacaaaacc tagcgaggga gattattttg tagcagggca ttctagcacc
    15121 tctatttctt tggcagtagg tgcttgtaag gctattgctt taaagggtga aaagcgtatt
    15181 cctgttgctt tgattggaga tggtgcttta agtgcgggta tggcctatga ggctttaaat
    15241 gaattgggtg attctaaatt tccttgcgta atacttttaa atgataatga aatgagtatt
    15301 tcaaaaccaa ttggagcaat ttcaaagtat ctttctcagg ctatggcaac gcagttttat
    15361 caaagtttta aaaagcgtat tgctaaaatg ttggatatat tacctgatag tgctacttat
    15421 atggctaagc gttttgaaga gagttttaaa cttattactc ctgggctttt gtttgaagaa
    15481 ttagggcttg aatatatagg gcctattgat ggacataatt taggtgaaat tatttctgca
    15541 ttaaaacaag caaaagctat gcaaaagcct tgtgtgatac atgctcaaac cataaagggt
    15601 aaaggctatg ctttagccga aggaaaacat gctaaatggc acggggtggg agcttttgat
    15661 atagatagtg gagagagtgt taaaaaaagt gatactaaaa aatctgctac tgaaattttt
    15721 tctaagaatt tgcttgattt agcctcaaaa tatgaaaata ttgttggggt tacggcagct
    15781 atgccaagtg gaacaggtct tgataagctt atagaaaaat atccaaatcg tttttgggat
    15841 gtggctattg cagaacagca tgcagtaact tctatggccg ctatggcaaa agaaggattt
    15901 aaacctttta ttgcaatata tagcactttt ttgcagcgtg cttatgatca agtgatccat
    15961 gattgtgcga ttatgaattt aaatgtggtt tttgctatgg atagggcagg gatagtaggc
    16021 gaagatgggg agacgcatca aggtgttttt gatcttagtt ttttagctcc tttgccaaat
    16081 ttcactcttt tagccccaag agatgaacaa atgatgcaaa atataatgga gtatgcttat
    16141 ttacatcaag gacctattgc ttttcgttat cctagaggga gttttatttt ggataaagaa
    16201 tttaattctt gtgagataaa acttggtaag gcgcaatggc ttgtaaaaaa tagtagtgaa
    16261 attgcttttt taggttatgg acaaggtgtg gcaaaagcgt ggcaagtttt aagagccttg
    16321 caagaaatga ataataatgc taatttgatt gatttaattt ttgctaaacc tttagatgaa
    16381 gagcttttgt gtgagcttgc taaaaaaagt aaaatttggt ttatttttag tgaaaatgtt
    16441 aaaattggcg gtatagaaag tttaattaat aattttttac aaaaatatga tttgcatgta
    16501 aaagttgtta gctttgaata tgaagacaaa tttattgaac atggaaaaac aagtgaggtg
    16561 gaaaaaaatc tagaaaaaga tgtcaatagt tt
//
LOCUS       DAPIWU010000030        16427 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.030, whole genome shotgun sequence.
ACCESSION   DAPIWU010000030 DAPIWU010000000
VERSION     DAPIWU010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16427
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.030"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..544)
                     /locus_tag="RJ285_000755"
     CDS             complement(<1..544)
                     /locus_tag="RJ285_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383553.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNAN
                     KTLETQNLEQETIKEQTQEDT"
     gene            complement(601..1368)
                     /gene="fliR"
                     /locus_tag="RJ285_000756"
     CDS             complement(601..1368)
                     /gene="fliR"
                     /locus_tag="RJ285_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HDV7383554.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(1355..1990)
                     /locus_tag="RJ285_000757"
     CDS             complement(1355..1990)
                     /locus_tag="RJ285_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7383555.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSNLYQMDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKIYTINVNGIC"
     gene            complement(2003..3076)
                     /locus_tag="RJ285_000758"
     CDS             complement(2003..3076)
                     /locus_tag="RJ285_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDV7383556.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVLDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(3076..3867)
                     /gene="rpsB"
                     /locus_tag="RJ285_000759"
     CDS             complement(3076..3867)
                     /gene="rpsB"
                     /locus_tag="RJ285_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDV7383557.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAISEEDFGEEQE"
     gene            complement(3983..5146)
                     /locus_tag="RJ285_000760"
     CDS             complement(3983..5146)
                     /locus_tag="RJ285_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7383558.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNEVLDK
                     VREKYDEKFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(5274..6398)
                     /locus_tag="RJ285_000761"
     CDS             complement(5274..6398)
                     /locus_tag="RJ285_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7383559.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(6395..7645)
                     /locus_tag="RJ285_000762"
     CDS             complement(6395..7645)
                     /locus_tag="RJ285_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HDV7383560.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(7647..8150)
                     /gene="petA"
                     /locus_tag="RJ285_000763"
     CDS             complement(7647..8150)
                     /gene="petA"
                     /locus_tag="RJ285_000763"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HDV7383561.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(8241..9527)
                     /locus_tag="RJ285_000764"
     CDS             complement(8241..9527)
                     /locus_tag="RJ285_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HDV7383562.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     ACFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILYFSREKNQEKIYISTKKMM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLFVISFFIGEIFNIKISFFALLWAGIFWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(9528..11387)
                     /gene="mnmG"
                     /locus_tag="RJ285_000765"
     CDS             complement(9528..11387)
                     /gene="mnmG"
                     /locus_tag="RJ285_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDV7383563.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     TRNKLLKLSNLEISQEQASALIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVEGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLKFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(11475..11972)
                     /gene="cetB"
                     /locus_tag="RJ285_000766"
     CDS             complement(11475..11972)
                     /gene="cetB"
                     /locus_tag="RJ285_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HDV7383564.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNLCKDADKTYNELIFS
                     LQEAK"
     gene            complement(11990..13369)
                     /gene="cetA"
                     /locus_tag="RJ285_000767"
     CDS             complement(11990..13369)
                     /gene="cetA"
                     /locus_tag="RJ285_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HDV7383565.1"
                     /translation="MIKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            complement(13473..13967)
                     /gene="cetC"
                     /locus_tag="RJ285_000768"
     CDS             complement(13473..13967)
                     /gene="cetC"
                     /locus_tag="RJ285_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HDV7383566.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNL
                     QENN"
     gene            14236..15612
                     /locus_tag="RJ285_000769"
     CDS             14236..15612
                     /locus_tag="RJ285_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDV7383567.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
     gene            complement(15609..16415)
                     /locus_tag="RJ285_000770"
     CDS             complement(15609..16415)
                     /locus_tag="RJ285_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HDV7383568.1"
                     /translation="MRGIFYIIALFSLLNADELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENVQVKNLSSLYEGENNSLL
                     FQKELFVAQNNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
BASE COUNT         5729 a         2987 c         2066 g         5645 t
ORIGIN      
        1 gagtgtcttc ttgagtctgt tctttaattg tttcttgttc taaattttga gtttctaaag
       61 ttttgtttgc attatcatct tgagcatcat catcaaaact caaatcttcc attccctctg
      121 aatttatatc taaagaattt tcatcaggca aatcatctaa atttaaatta tctaaatcca
      181 agcttatatc agcataagga ttttcatcat tgcttaacat tggcaaatca atagatgtat
      241 gcttgttcgc atctttatta ttaagcaaat ttaaaaaatc tgtaggtaaa aaaggttttt
      301 gtaaaatttg cgcatctata tcttctacat tttgatttcg cggggctaaa aaaatcaatc
      361 tatcgcattt ttctttaaga atttttaaag gtgctggagt atcactatct acaacaatca
      421 catcataatt acccaaattt tcactataag cattaagttc ttcaaaatca taagacattt
      481 ttttagcact aaggcttaca agtcttgaaa ctacagggtt ttcatttaaa agtaaaattt
      541 tcatcacttt aatccttaaa aaataatcgc tattttacga taatttcatt tatcctttcc
      601 ttaggagaaa aaaagagttt gcatatgagt aaaaagttct aaaattaaat ttttaaaata
      661 ttgcatcata actagtaaaa tagcaatcaa aactacaaaa cctagagcta tctttatagg
      721 atagccaata actaaaagat taaattgtgg cattgttttc atcaaaagtc caaaaataac
      781 atcggctaaa agtgaaattc caagtatagg aaagctcata gtaaaaccta tgatgaaaat
      841 attaaacata cccatattta aataatgcat taaattctca tgcggataaa atccacctaa
      901 actaatataa cccaaagaat gacttaaaaa caaaagcatt aaatgatggc catcaaaagc
      961 aagaaaaaac atcaaagcaa gtaaattcaa aatttgtgcc gtaataggca tactcgttcc
     1021 agaacttgga tctaatatac ttgccatagt aaatcccata gtaaaagcaa tctgctcacc
     1081 tgccatcata ataatagcaa aaataatttg aagcattaat cctgctatca ttccaaaaat
     1141 cacttcacta ataagctgta aaacaaaaaa actatctaaa tgcaaagatt ctaatctagc
     1201 caaaggatat aaatacatag tcaaaaataa aactatagta ctttttatta ccataggaat
     1261 agaattatgt gaaaaaaaag gaaaaaaaac tataagacca ctcattctag caagaagcaa
     1321 cataaaagtt acaacatttt tatcgcctaa ataattaaca aattccattg acgtttatag
     1381 tataaatttt atcacaaaaa cttgcgagct tactatcgtg agttacaaaa aataaagccg
     1441 catcattttc tttaacataa gaaattaaaa gttcgataac atttttagca ttatcaaaat
     1501 ccaaatttcc agttgcttca tcagcaaaaa taatctttgg ttttttacaa agcacacgtg
     1561 cgatactcac acgctgttgt tgtccgccgc taagctttcc tattttttga tgcaaaagtg
     1621 tatcaatacc taaccttttt aaaattttct catctaaatc ttgacccgat aaaacactag
     1681 caagttcgat attttctaaa gctgaaaaac ctttaaaaag ataatgtgtc tgaaaaataa
     1741 taccaaaatc atagcggcga atttttaatc tttcgttttc atccatctga taaagattag
     1801 aacctttaaa aaaaacttca cctttttttg gaattaataa agaagaaagt atatgcaaaa
     1861 gagtagattt accacaaccg ctactccctt gaatagcaat gcaatcttta gtatttaaag
     1921 taagatttaa accctcaaaa agcggataat caaaactatg gcttaaattt tccgctctta
     1981 agagttccat ttttaaccgt ttttaaagtt gtgcagcaac ttcagccgca aaatcttcag
     2041 ttttcttttc taaaccttca ccaacttcaa agcaaataaa ttctacaatt ttaatttttc
     2101 caccaaattc tttttctttt tcggcaatta cttgttctac agtttttttg tcatccagta
     2161 cataaaactg acccattaaa gtaagtttgc tatcgagttg agaattatcg gctataaagc
     2221 tattcatttt acctggaatg atattatccc aaattttttc aggtttacct tgagctttaa
     2281 gttcttcttt gattttttct tcagcttctt ttaaaattgc atcgcttaat tgtttgcgac
     2341 ttgcaaattg aggaatttta tgttcaggtt tatttggatc tttcagtcta cgtctttctt
     2401 cattttcttt ttcaagttca gcaaccaagg ctttgtattc attttcaaca aaagtcatat
     2461 ccaaatcttc ataacttaaa taacttggtc tcattgctgc aatatgcata caaatttgtc
     2521 ttaataaatc tcttgatttt gaagctactt cagcactatc acaagctgca gcgatcacaa
     2581 caccaacacg gccatttgta tgaatataac catttacaac gccgttagca cctgctttta
     2641 aagttgcaaa tcttcttaca actaagtttt ctcctatagt tgcaatttga ctttttaaat
     2701 attcttcaaa ttttacacca ttaatcgtac ttgagtgaag ctcttccaca ctttgcaagc
     2761 tattgctttg aatatgagct gtagtatctt ttgttaaagc gataaactga tcattttttg
     2821 ccacaaaatc tgtttcggaa ttaatctcac ttacagttgc gcttgtaaaa tcatcactta
     2881 cttttacact tactaaacct tctgcagcaa gtctatctgc ttttttagca gccttaccta
     2941 aacctttttc tcttaaaagt tgtactgctt tatcaaaatc tccattagtt tcactcaaag
     3001 catttttaca atccatcatc cccgcacctg tactttcgcg gagttctttt accattgcag
     3061 cagtaatttc agccattatt cttgctcctc accgaagtct tcttcgctta tcgcttcatc
     3121 taaaacttct tttttctctt catcggtgat ttctttttct tcatttgcta aagcttcgcc
     3181 atcttgttct cttaaagctt ttccttcatt aatcgcttca gccatttctt ggcagaaaag
     3241 ttgcactgaa cgaattgcat catcatttcc tggaatagga taagttacca aatcaggatc
     3301 gcagtttgta tctagtggag ctacaacagg aattcttaat ctatttgctt cttgaacagc
     3361 aattttctct tttactgtgt caataacaaa aatcatatca ggttgagttt tcatataacg
     3421 aattccacct aaataagcta ataatttttc tttttttctt gtaagcatta aagcttcttt
     3481 tttagttaaa agtttaatac ttccatcttc ttccattttt tcaattactt ctaattttct
     3541 aattgattgg cgaatggtac caaaatttgt catcataccg ccaagccatc tatgatttac
     3601 ataaggcata ccgcattttt cagcgtattc tttaatcgct ccacctgctt gtttttttgt
     3661 cccgacaaaa agtatagttt ttccttcggc agcagcgtca cgaacgatat tataggtata
     3721 tctaaaatat cttaaagttt tttgtaaatc aattacataa ataccttttc tctcgccaaa
     3781 aatgaatttt ttcatctttg gattccagcg tcttgtttgg tgtccaaaat gcacaccgca
     3841 ttctaataaa tctctcatac taaccatgag tttctcctta taaatttagc tttattcctc
     3901 cacatccctt aatttacaca agctaaaaag gattgatgcg tgtgaaatga agctaagatt
     3961 ttatcaaatt taagtttagt ttttacttat atatgtagtc cttggtaaga cttagattat
     4021 tattgatttc ttttgtgatt aaaaattgaa acaaatccac gcttccaaca cgaaaagcag
     4081 aggcacaaga acgaaggtac aaatcccaca ttcttataaa tttttcatca tatttttccc
     4141 ttaccttgtc caatacttcg ttaaaatttt catcccataa atctaaagtt tttgcatagt
     4201 gcattcttaa actttctgct aaaagaagat gaaaatccca ctcactcata gcacttacaa
     4261 cctctcttaa agaaggtaaa tatcctcctg gaaaaatata tttatctatc caagcatttg
     4321 tttttccttc aaacatggct aaaatagaat gtaaaagcat agaacctcca ggttttaaca
     4381 cttgttttac tttcatgaaa taaagtccta aattctcttt gcctacatgt tcaaacatac
     4441 ccacagaaac aactttatca aaataatttt caaattctaa atcttgataa ttttgaagtc
     4501 ttatttctat tttatcttca agaccaagtt cttttactct ttccttagct tttttacact
     4561 gctcctctga aatagtaatt ccaacaacct taactccata cttttgagcc gccataatag
     4621 aaagccaacc ccagccacaa cctatatcta aaagcttttc tccttctttt aaatcaagtt
     4681 ttttaagagt atgttctatt ttgttaattt gagcttcata aagagtatta ttaggctctt
     4741 taaaataagc gcaagaatag ctcatagtat catcaagcca aagcttataa aaatcattac
     4801 ctatatcata atgacttttg atatttttac tttcctgttt ttgggctatt ttactcaaga
     4861 tatcctctgt attttttaaa aaacgcttat ttgaaaaata atacaaaact ttagctattt
     4921 catcataatc accttctatt tctagtttag actccatata atgttttgca aaaactaaac
     4981 tcgtatcact aaataatttt aaaaaaggta ttttttcttt gaaaattaaa gaaaatttag
     5041 caggctgatt acccacatga aattcttctt gatcccaaaa tacaattcta aaatttccat
     5101 aattccattt tgaaagaata aatttaatca tttgtttttc aagcatgaca tactccaact
     5161 aataaaaatt attatttgat agtatctctt aattatgttt aaaatttgat aaaattgaag
     5221 aaaagataga atttttgcca cagatataaa atagtggcaa aaattttata atactaatgt
     5281 aatttagacc aaacagaacg cttccaacct atagcaaaaa tacttaaaat tacaaagaat
     5341 atcattacat aaattcctgt agtttttctt tcttcttttt tgctatcacc cacttgatca
     5401 atataagata caaccttagc ctgtgcagct tctgttaaac ctactcttgg catagcggtt
     5461 cctggaagaa gtttttgagt attattaata aaatcatgta aatattgctc accacgagat
     5521 cttatcatca tagaaagatc aggtggaaca gaacctaaat aagtttttaa atcattttga
     5581 tttgatggag taaaaaagct atcgtatttc atatcatgac aacgtccgca agcctcaata
     5641 aaagttgctt tatctttagc aaattttata tctttttcca ttaaagctgc tttttgagca
     5701 ctattttcca ttttagcata ttttgcctca acatctttct taatagtagc atcttcattg
     5761 gcttcaaatt taacactcac atctttaaga taagcaatta cattggctat atttgcattt
     5821 gtagcttctt cactttctcc tgaagtatct ttattgtaag ctgtcataat aaaagcatca
     5881 ccaaatttat gatctacttt taaagcaagc gcaggatgca taatcaaagc tgctaaaaat
     5941 ttttcatcaa aaatagcacc agctgcactg agatcaggcg gtattactcc catagaagaa
     6001 tcagtaatat tagccgctat tccatcttct tttacaccat gacatgcaaa acagttattt
     6061 tcaaaaaatt ctttaccttt ttttgcatca cccttagcaa aatcgatctt tgcaacatct
     6121 gcccaaagtg tttcaacctt gcttaattct tcttttgctt tttcaagttc tttgtttgca
     6181 ctctctattc ttttagcatc tcctgaagct tgtgcatctt ttagagctaa ttctttagct
     6241 tcaactatac cttttgcaaa agtagtatct tcaacagcaa aatcaaaatt tgcaggagca
     6301 acatgaggct tcatcactga atgagcataa ggctctaccc cccaatatac aagtgcagta
     6361 aaaactacta caactaaaaa tatttttatt tctctcattg tttagctcct tttctctcca
     6421 taatagtaat aaccggtaaa actacaataa gtaaaagtaa aaatactata gaagcgtaaa
     6481 atcctaccca agcatttaca cctgttggag gtaattttcc ataaactgtt aaaacaatta
     6541 aatcgataag caatatccaa aaccaaatga aaaataaagg tctttcatga gctggtttta
     6601 ccacatcact tctatcaagc caaggaagca agaagaaaat cacttgagca ataccaaatg
     6661 cagccaaacc tatatcaaaa gctttaatac ctgcaatatc aaagaaaaat cctcttaaaa
     6721 cttcataact ccataagaaa taccactcag gataaatatg agctggtgtt ttaagcgcat
     6781 tagctggatc aaaattaatt ggatccattg caaattcaaa tttaaaacag accaaataaa
     6841 agaagaaaat cataaaaaag cttatataca taaaatcttt tgataaaaat cctggccaaa
     6901 aaggaatcac tttagaaccc tttgtgtcac ctgccatgta tttttcagcc tctaaatcaa
     6961 agtcaagttc ttcagaaatt tcattattaa catgaggaat tcttaaagaa tagaagtgaa
     7021 atgctataat agcaatgata actataggaa gcaagcacac atgaagcata aaaaatcttg
     7081 ttaaagttgg atcagaaacc gcataatctc cacgaatcca aatcacaagc tcagggccaa
     7141 taaatggtat ccctccaaaa agattagtga ttacttgagc tgcccaataa ctcatttgtc
     7201 cccaaggaag catataccca ctaaaagctt cagcagaaaa tacaacaaac aaaagcatac
     7261 cgctaaccca aatcatctca cgaccttttt tataagaacc gtaataaatt cctgttagca
     7321 tatgtatgta tataatcaaa aatacaacag aagcggcaac accatgcatg tgacgccaaa
     7381 gccatccata gtccacctct tgcataatag tcttattcac actatcaaaa gcaagtgcag
     7441 tatctggttt ataatacatc acaagtaaaa gtcctgtaac aaaaagcact gcaaaaagag
     7501 tggttaaaat aacccccatt gcccaaagaa agttaatttg ctttggtatc caatatttta
     7561 ccattaaaac atcaagcagt ttatgtaccg caagtctttg atcaagccaa tctacaagac
     7621 cattagcttt tctaatttgt gccatcttaa gcctccgcta tcattttttt atattcagga
     7681 ccctcttcac ctaaaacaag cttggttcca tcaattttaa aaggaggaat ttcaagaggc
     7741 tttggaggag gtccaaagac attttttcca cttgtgtcaa attctccacc atgacaggcg
     7801 catttaaaca attgctcact tggttggtaa gcaggtatac aacccaaatg cgtacaaagt
     7861 cctataacca cagtataagc tgcgttatct accacaacat cacgtttttc atcttttggc
     7921 atactcgcat ctttttttaa tataaaaata ggctttttac gccattctat agttctaagc
     7981 tctccatctt gcattcctga taaatctact gtagtaaaac ctgcagcttt aacacttgga
     8041 agcggatccc aagttttttt catcgcaaca agtgagaaaa caccgcctac agcagctacg
     8101 cttccaaatg caaagcccat aaagcttcgt ctactctcag atgtagccat aacttgctcc
     8161 tttcgatttt attttttaac caagttaaaa gtttatcgaa attaaaataa attttttctt
     8221 tgtttaacaa gttttgatat ttagacaata agagcaaaaa gagaaaaaac aagcacaggt
     8281 aaagttatca aaaagccaaa tttacaatat tgccaaaaag aaatattaat gccttttcta
     8341 gccaaaactc caagccaaag caaagttgct aaagaaccta ttggcgtaag ttttggacct
     8401 atatttacac ctaaaagatg tgcataaatc atcaaagaat caaaagaaaa attctcaaaa
     8461 tattctttta atgccaaatc tccgattaaa accataggca aattattaaa cacagaagat
     8521 ccaaaagctg aaatcaaagc cacaccaaaa attccactct tatcttgcat caaaaaagca
     8581 tagcttttaa ccaaaatttc actcacacct attttatgta aagcaaaaac caccatataa
     8641 agcccaaaac taaaaagcaa aactccataa ggtgcttcaa aaagaatttt aatacttttt
     8701 ttaccttgaa tttttaaaat aataagccaa aaaattcccg cccaaagcaa agcaaaaaaa
     8761 cttattttaa tattaaaaat ttcacctata aaaaaactga taacaaaaag aaataaaaat
     8821 actatgcaaa gaaaaaacaa tttcaatgaa atttgctctt ttttgattaa tttaaattca
     8881 agccttttag gtaaaactct cacataaagc acaaaaaccg taactatagt agaaagcaaa
     8941 acaaaaaaat ttggcaaaaa catattttta gcaaattcta aaaattctat cttaaaataa
     9001 tttgctgtga tgatattggt taaatttgaa ataaccaaag cgtttgaact tgcatcgcat
     9061 aaaaaagaaa ggctaagtaa aaaagaactt aaaataaaag catgattttt acaatcttta
     9121 agagttgaaa ataaagctat aataataggt gtaatgatta aaatcgctcc atcgttagca
     9181 aaaaatgcag aaagaaaaaa tacaaaaatc aacaaaaata acatcatttt ttttgtactg
     9241 atataaattt tttcttgatt tttctctcta gaaaaataca aaattttact cgcaataaaa
     9301 tcaaaaaatc ccaaagcttc caagctaaaa gaaaggataa tcaacccaac caaagttaaa
     9361 gaactatccc aaaccaaaga aaaaacaaaa caagcatctt taaaatctac caattgaaaa
     9421 ataaaaacaa aaaaagcccc caagctagaa aatacccaaa taggtaaatt ccatggacgc
     9481 caaaaaagta aaactaaagt agataaaaaa ataaaaaaag caagcattta agcttttttc
     9541 ttttgcattt tgatataaat ttgcaaaata tccaacgctg caggagtgat tccactgatt
     9601 tgacttgcag caaaaatggt tggaggttta tgatgattaa gcttttctac aacctcatta
     9661 ctcaaaccac ttacactttt aaaatcaaaa ttttcaggaa ttttaagctc actaagattt
     9721 ttcatttttt ctacttgagc tttttgcata ctaatgtaat gataatactt tgcctcattt
     9781 aaaatctctc ttaaggagta atgatccatg gtttcaaata tagggtcaag tttttttaat
     9841 ttttctatat caaaacttgc tcttgcaaca attttttgaa gattgactat agaagaaatt
     9901 ttatcttctc ctaaactctc taaaaaagca ttattttggt tgttaggcgt aaattcttta
     9961 gaaagtaaaa atttaagtcc tttttgaaga ttgtttgcga tattttgtat ataagtaaaa
    10021 tcttgctcgc ttaaaagccc taaatcatag ccatattttc caagtctaag tatagcattt
    10081 tcttccctta aaagcagtct aaattccgct cttgaagtaa acattctata aggttctttt
    10141 gtgcctttta ctaccaaatc atcgattaaa actcctatat aagcttcatc acgccttaaa
    10201 atcaaaggct ctttcatatc tatgcttaag cttgcattga ttcccgccat aaagccttgt
    10261 gctgcagcct cttcataacc tgtagttcca ttaatctgtc ctgcacaata aagattttta
    10321 atctttttaa gttctaaagt atgcttaagt tcagttggct ctatatagtc atattctata
    10381 gcataaccaa aacgggttat tttagcattt tcaaaaccct ctacagaacg caacatttga
    10441 gtttgtactt cataaggtaa agaagtagaa aaaccgttaa tataatactc cgtcgcatcg
    10501 atagtttgag gctctataaa aagatgatgg ctttctttgt cgctaaaacg attgatctta
    10561 tcttctatag aaggacaata ccttggcccc acaccttcaa tctgtcctgt aaaaagcggg
    10621 gcacgataaa aattattctt aataatctca tgtgtagttg tattagtgcg tgcgatataa
    10681 caaggaagtt gagtaggatt gaaatttctt gaacgaaaac taaaagcttt aggatttaca
    10741 tcaccatctt gaatttcaag cacgctaaaa tcaatgcttt ttgcatccac tcttgggcaa
    10801 gttcctgttt ttaaacgtcc catttttaaa cccaaagttt gcagataatt tcctaaattt
    10861 accgaagcaa gctcccctac ccttcctgct tgaagtttgt tttcacctac atgaataagt
    10921 ccatttaaaa aagttcctgt tgtaagtatc acttttttgg caaaatatgt gttttctaaa
    10981 tttgttttca cgcctttaac ttcatcattt tctacaatta aagcactcgc ttgttcttga
    11041 gaaatttcta aatttgaaag ttttaaaagt ttattacgtg taatgatacg gtatttatcc
    11101 atatcaattt gtgccctact tccttgaacg gctacaccct tactttcatt taaaatgcga
    11161 aattgtatcc ctgcttcatc ggtgatttca cccataagac cacccatggc atcaagttct
    11221 tttaccaaat gtccttttgc aagtccacct atggctggat tacaacttgc cgctcctatt
    11281 tgctcaatca atgtagttaa aagtaaggtt tttttaccca ttctagcagc agcagcactt
    11341 gcttcaacac ctgcatgtcc accacctata acaatgacat caaacatatt ttgccttgaa
    11401 aaatgtgaat ttttaaaaga aagattatat aatatttaga cttaaaacaa actcgtttta
    11461 agtctaacaa aaatttattt agcttcttgg agagaaaaga ttagctcatt ataagtttta
    11521 tctgcatctt tgcataaatt tttaagcatc tcaacaccct tatttaagcc ttgttgctgt
    11581 tctgctctta aaagatcgct ataaagactt tctattgtag aaatagcgct tttatttggc
    11641 atacgacgaa cggaataata gcctatgata ttattattaa catctattga tggggttaca
    11701 tttgcaaaaa cccaatagta attgttatct ttggttttat tttttacgta agcaaaaatt
    11761 tctttgcctt ctttcatata atcccataaa tatttaaaaa cagtttttgg catctcttca
    11821 tgtcttacta tgttatgagg tttatttaaa acttcaccca tggtataacc tgcatacttt
    11881 aaaaaatcat catttgcata aactatttta ccttttaaat ctgttttaga agtaattaaa
    11941 ctatcttctt gtaaaaaaat ttctcttgac attttcccac cctcttaatt tatattttta
    12001 attttgctaa gatttcagca cttctttgct ctagtgattt aatatcattt acaatcgcat
    12061 cataagcttt ttgatcgata taatcttgac ttgattcttc tattgctttt ttagcgttat
    12121 cttttataaa ttctttagct aaatttaact cagtttcaga actaagctca ttaataacac
    12181 cttgagctct ctcatcttga caaagattag aaattggatc tacactttca agattgaaat
    12241 tttgagcccc atttaaattt aaatatatat ttgatttata aagaatatga tcgattttaa
    12301 ccacagacaa aatcaatctc tttgcaaagg atccaaaatt aacaccaaga gcactactat
    12361 tttcttctag acgtttaaaa gcttgagaaa atttattaat tctttcttca gattcactaa
    12421 caatgttaaa aacttgctca ctgccacttt ggatatttac aaaatcttgt tgcatagtct
    12481 gaattgcaat agaaatttcg cttgtagatc tttgagttct ttctgctaac tttctaactt
    12541 catcagccac aaccgcaaag cccctaccat gctctcctgc acgcgcagct tcaatagcag
    12601 catttaaagc tagaagattg gtttgatcgg ctatatcacg tattacttca accactgaag
    12661 tgatattttg tgaattagcc acaaaagttt gtactgtctc cttgctcgaa tttacaacat
    12721 ccattaaaga acccatagca ctttgaagag aatccacctc tgaaccattt tctgtagctg
    12781 tatgagaaat ggcatccact gtatcatata catttttcat catgctaata tcttgattta
    12841 atgagctaga aatttgagac atgtctttat tttgatttcc aaggcttaaa tccattaaag
    12901 ttcttgataa agcattttta aaagtagatc ttgctgtcac ttctatgttt gctaaagctt
    12961 tatttataaa ttcgatatta tgagcaaaaa ttccttttaa accttcaggc aaagccttac
    13021 gataaaattc acctttttga gaacatgaaa tagaagtatt aatttccctt aagtaagctt
    13081 ctagcccatc aatagtatta ttaagattat ctgctatttc ggctaatttt ttgctttttg
    13141 tttttacata gatgattcta ttgtcgaaat taccctcctt taactctcta caaagaacca
    13201 aaagtttatc tatcattatt tgctcatctt tgtgttgtct aagcaaataa atcattaaaa
    13261 cagcgattaa aacaaaaatt atcgctccaa caaaaatatg aataaaaatg acacctaaaa
    13321 caccgataac acttagaaaa atagttaaca ataatccatt ttttatcata aatttaccct
    13381 ttttattgaa aattttttga agtcataaat caaaacaatg ctttaacttc taggtgaaaa
    13441 ttatacaata aaaaagataa aatatatctt atttaattat tttcttgtaa gttaaaaata
    13501 agttcattat aagtcatttt ataagaactt acaatatcca ttaaagctga aactccagca
    13561 ttaatgcccg atttttgctc tttttcaagt aaaattttat aaacttcttc aattatagaa
    13621 agagattttc tattaggtgc acgacgaaca gaataataat tgatgatatt tccattagta
    13681 tcaaatgaag cacttacatt tgcaaaaacc cagtaaaaat taccatcttt ggctttattt
    13741 ttcacaaatg caaaaatttc atctcctttt tgaatataat cccaaagaca tttaaataca
    13801 gtgcgtggca tatcttcatg tcttactata ttatgagatt tatacaaaag ttcatcaact
    13861 ttataacctg cgtattttaa aaagtcatta ttggcataaa tgatattccc cttaagatct
    13921 gttttagaag taattaaagc attttcagac aaaactattt ctttcataat ttaaaacatc
    13981 ccaataaaac aaataaatca aaaatagaat tattaccaat aacaaacaac aaaaagcaaa
    14041 ctgaattgca aaattataaa attttcaaaa atattttaaa ttttataatg caaataatga
    14101 gaaattttgt aacgtttata taaaaaatta tcatatcata taaaagaaag tatttctaga
    14161 tttgtttttt tgttaaaatt tacgatacac attgttaaaa ttatatttta caaagatcaa
    14221 aaggagtgaa taaacttgga aactttaagt caaactttag ctgaaagaaa accgccttta
    14281 tataaacgta ttatcaaaag tcttggattt tgggtgatta taggcattat tacaggtatt
    14341 gtacttggct atacagataa agaattagcc attgctagca aaccaggagt tgattatttt
    14401 ataggtgctt taaaggttct tataggccct attatttttg ttactttggt tttgggcatc
    14461 attagtcttg aaagtttaaa aaaagtaggt agcattggtg ctaaagcggt tatttacttt
    14521 gaagttgtaa gtactttagc acttgctata ggtattttta tggcaaatgt tatgcaacca
    14581 ggccatggaa tgaatcttga tccaagtcaa cttgatacaa aaagcgttca aaaatacatt
    14641 tctcaaacca cagaagtaag tgcgagctct gagattatgc atattttaaa agatgctatg
    14701 cctactgata ttatcacacc ttttacagaa ggaaaaacca tacaagtttt agttattgct
    14761 ataattactg ctttgattat ttctttaatg agaatagaag acaaacaggc aattcaaaga
    14821 gtttttgaag tggtacaaaa ttttgttttt aaaattctac aaatcattat gtattttagt
    14881 cctattgccg ccttttcagc aatggctgta ctcatagctc aatacggaat tggctctttg
    14941 atcaacttag catatttact tttagtaatg ctgatttcat gtcttgtttt tatatttgga
    15001 atcttaggtc tgatttgtta ttttgcaaaa gtaaatatct tcaaatttat gagatttatc
    15061 tcaagagaag tattgatcgt ttttgcaacc agttcaagcg agtctgcact tgctccttta
    15121 atgagaaaac tagaaaaagc aggactttct aaagcaacag tcggacttgt tttaccaacg
    15181 ggatatagtt ttaatcttga ttgtacaaat atttatctag ctatgagctt aatctttcta
    15241 gcacaagctt tcaatgtaaa tttaagttta gcacacgaaa tcagtatttt aatagtatta
    15301 atgatagcct caaaaggtgc agtaggtgta actggatcag gttttatagt gcttggaagt
    15361 acgcttgcag ctctaggaaa tatggaaatt tcagaagcaa atgcaacctt agcacaagtt
    15421 ctaccagtag ctgctatagg tgttctttta ggtgttgaca aatttatgtc tgaaatgagg
    15481 gcggttggaa atctttgtgg aaattcagta gcagctttaa tcgttgctat ctgggataaa
    15541 caaattgatt gggaaaaatt ccgctacgct atggacaatc cagaaaaatt tcataatgct
    15601 ggaatgaact aatgagttct ttggaggaaa tcatatcgat taacctcctc taaagtatta
    15661 tctttttttc taaattgctt taaaaaactt tcattgaaat taaaactaaa tccaacttga
    15721 acaacagtat catcaacagt ctctcttgca ctataatcac gacgcaataa atttaaacta
    15781 aatacactat aaggagagta agatacttga taattagttt tatcattatc cttacttata
    15841 tcaaaagcaa aagcggtata agttggaatt acaaaactca ttccaagctg taaatttttt
    15901 tctgcttcat tgggtatata ataattacta taagccttta taaatttact ataaccaaac
    15961 tctgtaccaa agcttttagt atctttttgt tccttttgtt tatcaataaa accattaact
    16021 ccaaataaaa aatcatcttt ttcataacga ttgattaaac cccctgagta attataatta
    16081 ttttgagcca caaaaagttc tttttgaaaa agcaaagaat tattctcccc ctcataaaga
    16141 gaacttaaat ttttaacctg cacattttca ttttgaaaat ctaaattccc atctgtttta
    16201 tctataccat tattattttc taaagttttt gaaagtaagc tatcaaaagt gcttttaaaa
    16261 tccacattct cttcttgaat ttttggagct tctttggtat ttttataatc aaagtgctcc
    16321 caagaatttt gattattatt ttttgctaaa gcctctgtaa gttcatcggc attgagtaaa
    16381 gaaaacaatg ctattatata aaaaataccc ctcattattc ttatatt
//
LOCUS       DAPIWU010000031        16371 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.031, whole genome shotgun sequence.
ACCESSION   DAPIWU010000031 DAPIWU010000000
VERSION     DAPIWU010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16371
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.031"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..243
                     /locus_tag="RJ285_000771"
     CDS             <1..243
                     /locus_tag="RJ285_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383569.1"
                     /translation="LKEQRNNALKSEQEQILLWMNNFNFLKDNNLSLIQKEKDLFEKD
                     LKDLREIFKKNAFEIGIWWFSKEKEDLEKRINESLK"
     gene            240..1001
                     /locus_tag="RJ285_000772"
     CDS             240..1001
                     /locus_tag="RJ285_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HDV7383570.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANELKLDLLSEIYVSRAALKLKKFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGSNQLHPSLRANEKIILHENTDLRAFKSEEKFELVT
                     CDVSFISLINLLYYVDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKECAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            967..1821
                     /locus_tag="RJ285_000773"
     CDS             967..1821
                     /locus_tag="RJ285_000773"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDV7383571.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKYLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFTSLKFIVVGYDF
                     SFGKNRAYSAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSRANLQKAKEFLGRN
                     YSIKGKVIKGQGLGSKELFATINLDCEGYFLPQNGVYATLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFMQGEFFELEFISFLRENQKFQDLKKLKNQITKDIEQARE
                     LLRKNDER"
     gene            1808..2518
                     /gene="cmoA"
                     /locus_tag="RJ285_000774"
     CDS             1808..2518
                     /gene="cmoA"
                     /locus_tag="RJ285_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDV7383572.1"
                     /translation="MMKDELFKQNPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2508..2729)
                     /locus_tag="RJ285_000775"
     CDS             complement(2508..2729)
                     /locus_tag="RJ285_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HDV7383573.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(2726..3172)
                     /locus_tag="RJ285_000776"
     CDS             complement(2726..3172)
                     /locus_tag="RJ285_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383574.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKEKAKE
                     CKESGTLSEDCINALKVGVKSTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDI
                     NQSSENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            complement(3230..3862)
                     /locus_tag="RJ285_000777"
     CDS             complement(3230..3862)
                     /locus_tag="RJ285_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDV7383575.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            complement(3873..4523)
                     /locus_tag="RJ285_000778"
     CDS             complement(3873..4523)
                     /locus_tag="RJ285_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HDV7383576.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF"
     gene            complement(4520..5146)
                     /gene="nth"
                     /locus_tag="RJ285_000779"
     CDS             complement(4520..5146)
                     /gene="nth"
                     /locus_tag="RJ285_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDV7383577.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            5227..6048
                     /gene="peb4"
                     /locus_tag="RJ285_000780"
     CDS             5227..6048
                     /gene="peb4"
                     /locus_tag="RJ285_000780"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HDV7383578.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            6048..7112
                     /gene="fbaA"
                     /locus_tag="RJ285_000781"
     CDS             6048..7112
                     /gene="fbaA"
                     /locus_tag="RJ285_000781"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDV7383579.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            7207..8649
                     /locus_tag="RJ285_000782"
     CDS             7207..8649
                     /locus_tag="RJ285_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7383580.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            8646..9599
                     /locus_tag="RJ285_000783"
     CDS             8646..9599
                     /locus_tag="RJ285_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDV7383581.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9586..10461
                     /locus_tag="RJ285_000784"
     CDS             9586..10461
                     /locus_tag="RJ285_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HDV7383582.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKSV"
     gene            complement(10453..11796)
                     /locus_tag="RJ285_000785"
     CDS             complement(10453..11796)
                     /locus_tag="RJ285_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7383583.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(11847..12515)
                     /locus_tag="RJ285_000786"
     CDS             complement(11847..12515)
                     /locus_tag="RJ285_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDV7383584.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDVHQIS
                     NAILQVSEPRKPCVKISKIHNNPNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(12512..14215)
                     /locus_tag="RJ285_000787"
     CDS             complement(12512..14215)
                     /locus_tag="RJ285_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDV7383585.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
     gene            14422..15191
                     /gene="ppk2"
                     /locus_tag="RJ285_000788"
                     /pseudo
     CDS             14422..15191
                     /gene="ppk2"
                     /locus_tag="RJ285_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002849683.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
     gene            15200..>16371
                     /locus_tag="RJ285_000789"
     CDS             15200..>16371
                     /locus_tag="RJ285_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7383586.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMA"
BASE COUNT         5978 a         2090 c         2775 g         5528 t
ORIGIN      
        1 ttaaaagagc aaagaaataa tgccttaaaa tccgaacaag agcaaatact tttatggatg
       61 aataatttta attttttaaa agataataac ttaagtttaa ttcaaaaaga aaaagatctt
      121 tttgaaaaag atcttaaaga tcttagagaa atttttaaaa aaaatgcttt tgaaataggt
      181 atttggtggt tttctaaaga aaaagaagac ttagaaaaaa gaataaatga gagtttaaaa
      241 tgagatttga tttttttgtt tcaaagcgtt taaatatcag tagaaataaa gccttagagc
      301 ttatagaaaa tgaagagatt ttacttaatg gtaagagttt taaagcttct tttgatgtaa
      361 aaaatttttt agaaaattta aaaaaaacgc aagatttaaa tcctgaagat atacttttag
      421 ccaatgagtt aaaattggat cttttaagtg aaatttatgt ttcaagagca gctttgaaat
      481 taaaaaaatt tttagaagaa aatgatattg aaataaaaca taaaaattgt cttgatatag
      541 gatctagtac gggcggtttt gttcaaattt tacttgaaaa tcaggcttta aaaatcactg
      601 ctcttgatgt gggtagtaat caactccatc caagtttaag agcaaatgaa aaaattatct
      661 tgcatgaaaa tacagatctt agagccttta aaagtgaaga aaaatttgaa cttgttactt
      721 gtgatgtgag ttttatttct cttattaatt tactttatta tgtcgataat ttagctttaa
      781 aggaaattat tttacttttt aaacctcagt ttgaagtggg aaaaaatatc aaaagagata
      841 aaaaaggtgt tttaaaagat gacaaggcaa tcttaaaagc aagaatggat tttgaaaaag
      901 aatgtgctaa gttaggttgg cttttaaaaa atacgcaaaa atcaagcatt aaaggaaagg
      961 aaggtaatgt tgaatatttt tactactata tcaaaaatta atattacttc tttagccata
     1021 ggttgttttg atggtatgca tttaggacat ctaaaacttg taaaatattt agatgagaat
     1081 ggggctttgc tagttattaa taaatttaaa ggtcaatttc tttgttcaaa tcgtcaaaaa
     1141 gaagaaattt caggaaaaaa agttatagaa gtggattttg aaagtataaa atctttagat
     1201 ggtaaagatt ttttaagctt tttgaaaaaa gaatttacca gtttaaaatt tatagtcgtg
     1261 ggttatgatt tttcttttgg gaaaaatagg gcttatagtg ctaaagatat tgagttttta
     1321 agtgggataa aaactataat agttgatgaa tttagcatag gtggaatagg tgttcatgca
     1381 agtttaatta aggatttttt atcaagagca aatttgcaaa aagcaaaaga atttttaggg
     1441 agaaattata gcatcaaagg aaaggtaatt aaaggacaag gcttaggttc taaagaactt
     1501 tttgcaacta taaatttaga ttgcgaaggt tattttttgc ctcaaaatgg tgtttacgct
     1561 actttgttaa aaagtcaaag aaaaacttat aaaagtgtga gttttttagg tgtaagatca
     1621 agcgatgaaa attttgctat agaaagtcat attttagaag aattgggtga aaatttcatg
     1681 caaggagagt tttttgaact cgagtttata tcttttctaa gagagaatca aaaatttcaa
     1741 gatctaaaaa aacttaaaaa tcaaattact aaagatatag aacaggctag agaattatta
     1801 aggaaaaatg atgaaagatg aactttttaa acaaaaccct aaaaaacaat ttgaatttga
     1861 taaaagcgtg gctagtgttt ttgatgatat gatcaatcgt tctgtaccat tttatagaga
     1921 aaatttagaa ctttgtggca atttattggc taaaatttta cctacaaatg caagtgtttg
     1981 cgatttgggc tgctcaagtg ctaatttttt gatttttttg gcaaatctaa gaaaggattt
     2041 taaacttttt ggcgtggata attctgcttc catgcttgaa gttgcaaaat caaaagctaa
     2101 agcttatggg cttgatataa gtttttttga agctaattta tgcgaatttg atttttttac
     2161 ttgcgatgtt tttgtagcaa attataccat gcagtttatt cgtcctccta aaagacaaga
     2221 attgcttgat caaatttata aaaatttaaa ctctaaaggc attttgatta tgagtgaaaa
     2281 aatcctttat gaagatgctt ttttgtctaa aaatatcata gaactttatg ctgattataa
     2341 agaaaaacaa ggctattcta agtttgaaat cgcagctaaa agagaagctt tggaaaatgt
     2401 tttaattcct tatagtcaaa aagaaaattt aaatatgcta gaaaaggcag gttttaagaa
     2461 aatagaaagt atttttaaat gggcaaattt tgaaactttc atagctttta aggattagaa
     2521 atattttcat cttcccattc atcttttggg aaacctatct tatatgcatt aacacaatct
     2581 tgactaatga tagctttgtg tctgcattct aaacttcttt tttttgcttc ctcggggtga
     2641 ttttgataat attctacact tttggtttgt tcgcatgctg caaaaaatat accaataagg
     2701 cttaaaaaaa gagttatttt catggtcatt tttcctgtgt catattaaca tcatcgctaa
     2761 agatagaact ttgattgttt tctgttgttt tggaaggata aatttcagaa ggtgtttctg
     2821 ctataggtgg tattataata ctttcattat tttctgaact ttggttaata tcttttgtgg
     2881 ttttttcttt ttttaaatca ttttgtttta aagcttctaa tatttgatta tcagattttt
     2941 tcggtgtgtt tggactgtat ttaccctctt catttgttga tttaacacca acttttaatg
     3001 cattaataca atcttcgcta agagttccgc tttctttgca ttctttcgct ttttctttcg
     3061 ctttttcttt tgcttcgcta ggaagatttt tgtagtaatt ttctgtttta ctatcacaag
     3121 ctgttatatt aataactatt aaaattgcaa gtaaaatact tagtcttcgc atttatcaat
     3181 ctcctaaaat ttttaatatc ttagcaaact tgtataaagc aacgataaat tatttttctt
     3241 cattgtaaga aaaaataggt aaagaccatt gatatttgat agctaaaagc cttgcaaaaa
     3301 ctcctataaa aagagttaaa agtgtgcaaa ctagggcatt aagctcaagc caaattatta
     3361 gagaataata gattgctcct gcaattatgg caattcctgc ataaatttct ttttgaaaca
     3421 ccaaggggat tctcatacat aaaatatctc ttaaaattcc accaaaaaca ccggtaatta
     3481 cagcggcagc aacggctatg ataaagccat ggttttgatc tatagctatt tgagctccaa
     3541 gtatgctaaa aacaacaagt cctatagcat caagagttag aaataaagtt tcaagtttgg
     3601 ttactacgcg cggaattttt gtggctacaa gggcgcaaaa acagattaaa ataatatatt
     3661 caggatgttt aacccaagtt aaaggataat gtcctaaaag cacatctcgt atgcttccgc
     3721 ctccaattgc tgttacgaga gcaataaaaa taactccaaa aagatccatt ttgtggcgtc
     3781 ctgcagctaa agctcctgtc attccttctg cggaaatacc tatgatataa agagtggtta
     3841 tcgtaagagc atttatctcc ataatttata ccttaaaatt tatcacaatt tatttgatac
     3901 tgtttaatat tttcatcatt tacttcgtgg tttggtgctt gatagcattc tttaaatttc
     3961 ggagttttaa taattttcac ataaaaactt ggtatagcaa tacggttttt aatgtattgt
     4021 ggttctttat cgtaaagtac taaatttaaa acttcgatac tttgaaattc taaagctaaa
     4081 tttctttctc tttgttcgat ttcattccaa attttattat ttatttgtgc attttgtggg
     4141 gtaatattac tcattaaaaa tactgaattt tgagcagctt tactaaagct aaaagaagca
     4201 ttaggcgcag tgtgtcctcg tgtgtaacca ctgtttttat aattactcca agtagtgcgg
     4261 tattttttag gaatatttgt atcatcttca aagcgagggc gttttttgat ttgtctatct
     4321 ttcaaatttg aagcttctac cttataagca acagcttttg tgcctttgag tttataatca
     4381 tagcaattta gataaaaaaa cttatctaag atttgcgagc aatttatatt gttaaaataa
     4441 gaagaaaaat cagcactagg cttgtaaggt tctaaggcaa aaatattaag agatatagtg
     4501 agtaaaaaga tgaaaatttt catttaagtt ccttatcttt acttttgcaa agatgattta
     4561 aaaagcattc tttacataaa ggttttttag ctttacaggt gtaacgtcca aaaagaacca
     4621 tggcttgatg aagatagtta agattatctt taaatgtgcg tgttaaatct tcttctgtag
     4681 cttctggagt ttttgctttg ctaagtccta agcggtgaga aactctaaaa acatgagtat
     4741 ctacagccat gaaatttgct ccgcaccatt ctattaaaac tacatgagcg gttttttgtc
     4801 ctacgcctgc taaggatttt aaattttgtt catcaagggg aatttctccg tcaaaatttt
     4861 cacaaactgc ttttgccatt tttataagat tttgtgcttt attattaaaa aatgaacaag
     4921 tttgtatata ggttttaaga cttgataaat ttgcatttgc aagggattta atatcaggat
     4981 aagctttaaa aagatcagga gtgatgagat taactctttt atcagtgcat tgggctgaaa
     5041 gcattacgca gactaaaagc tcatataaat ttgaaaattt aagctctgtt acaggcttgt
     5101 caaaatgttt taaaaaaagt tctttgattt ctaaatttct tttcattttt taattttagt
     5161 taattagctt taaaccaagt ttagatataa ttgattttat atacatttta ttaaaaagga
     5221 aacctaatga aaaaattttc tttagtcgca gcaactttga ttgcaggtgt agttttaaat
     5281 gtaaatgcag ctacagtagc tactgttaat ggcaagagca ttagcgatac agaagtaagt
     5341 gaattttttg cccctatgct tagaggacag gattttaaaa ctttgccaga taatcaaaaa
     5401 aaagctctta ttcagcaata tattatgcaa gatttaattt tgcaagatgc taaaaaacaa
     5461 aatttagaaa aagacccttt atacacaaaa gaacttgatc gtgcaaaaga tgcaatactt
     5521 gttaatgttt atcaagagaa aattttaaat actattaaaa ttgatgcggc taaagttaaa
     5581 gctttttatg atcaaaataa agacaaatat gtaaaacctg caagagtgca agcaaaacat
     5641 atcttagtag cgacagaaaa agaagctaag gatattatta acgaacttaa aggtttaaaa
     5701 ggtaaagaac tagatgctaa atttagcgag cttgctaaag agaaatcaat tgatccaggt
     5761 tcaaaaaacc aaggtggtga gcttggttgg tttgatcaat caactatggt aaagcctttt
     5821 acagatgctg ctttcgcgct taaaaatggt actattacta caactccggt aaaaacgaat
     5881 tttggttatc atgtaatctt aaaagaaaat tcgcaagcta aaggtcaaat caaatttgat
     5941 gaagtaaaac aaggtattga aaacggactt aaatttgaag aatttaaaaa agttatcaat
     6001 caaaaaggcc aagatctctt aaatagtgct aaagtggaat ataaataatg ggtgttttag
     6061 acattgtaaa agcaggggtg attagcggag atgagcttaa taaaatttat gactatgcta
     6121 aagcagaggg ttttgctatc cctgctgtta atgttgtagg aactgattct attaatgcag
     6181 ttttagaagc tgcaaaaaaa gttaactctc cagttattat ccagttttca aatggtgggg
     6241 caaaatttta tgcagggaaa aattgtccta atggagaagt tttaggtgca attagtgggg
     6301 ctaaacatgt acatttactt gctaaagctt atggtgtacc tgtgatttta cacactgatc
     6361 atgctgcaag aaaacttttg ccttggattg atgggcttat tgaggcaaat gcacaatata
     6421 aaaaaaccca tggacaagct ttatttagtt ctcatatgct tgatcttagc gaagaaagtt
     6481 tagaagaaaa tcttagcact tgtgaagttt atcttcaaaa acttgatgct ttaggtgtcg
     6541 cgcttgaaat agaattaggt tgtacaggtg gcgaagaaga tggagtggat aatacaggta
     6601 ttgataattc caagctttat acccaaccag aagatgtagc tcttgcatat gaaagacttg
     6661 gaaaaattag tgataaattt tcaatcgcag caagctttgg aaatgtacat ggagtttaca
     6721 agccaggaaa tgttagctta caacctgaaa ttttaaaaaa ttcgcaaaaa tttgtaaaag
     6781 ataaatttgc tttaaatagc gataagccta taaattttgt atttcatggc ggtagcggta
     6841 gtgagctaaa agatattaaa aatgcagtaa gctatggcgt aattaagatg aatattgaca
     6901 cagatactca atgggctttt tgggatgggg tgcgtgaata tgaacttaaa aatagggctt
     6961 atttgcaagg acaaattgga aatccagaag gtgatgacaa gccaaataaa aaatactatg
     7021 atccgcgtgt ttggttaaga agcggtgaag aaagcatgat aaaacgtctt gaaatcgctt
     7081 ttgaagattt aaactgtata aacaaaaact aagcatttta aaagcttagt tttattttgt
     7141 tttaaaaatt tttatcaaat taagtagcaa tctttaaaat aaaattttta atgaggtatt
     7201 ggtttcatgg atattaaatc agatgaaatt tcagaacttg ttttgcctga aggcaaagat
     7261 gcaagaggtt ctttggttta ttttaaaatt atttttattc cagcttttct ttatattttg
     7321 attttattgg gttattttaa tgtaattgac tttaaggtcg aattacatac ggttattatg
     7381 acaggtgtga ttttttttac agcattgatt tttgctagac atagtgctga gtatgcgtat
     7441 agtatttttg aacaacaaaa agatgaattt aaacaggctt taaaaagaca tattatgagg
     7501 cattttcttg ccatagggaa agacacgaaa tcaaatgcca attttgatga ctttgcttat
     7561 acatatatta agggtgcaag aaatgagaat tttgctagta taggttcggc aatttttcca
     7621 atgatgggaa ttttaggaac ttttatcagt atagcttttt caatgccaaa ttttagttct
     7681 agtgatacag ccgctttaga acaagaaatt gcagatttgt taagtggagt gggaactgct
     7741 ttttatgttt caatttatgg aatttttctt gcattatggt ggatgttttt tgaaaaatat
     7801 ggtaaaagca aaatagatcg tttgctaaat cgtcaaaaaa acgctacaag tggatttttt
     7861 tggacaaaag aagagcttga tcaaagatat ttaactgaaa gtttgcaaca ttttgaaaaa
     7921 attggagcaa tttttaaaca agttagtaat gatgattttt ttgcagagct tgatcatgct
     7981 attgatagaa aatttggtat tttccaagat atgctaaatg tagaagaaaa ggctattaga
     8041 ttaagtagtg aacatatcaa acaaaccatg ggtgagctta gtaaagcaca aagagatcaa
     8101 cgcgatcttg gaaagcttta tagtgaaatg ttaaatggta taggtttgct caatcaaaat
     8161 ttaaaagaaa tcaatacaag aatgtcagaa caatataatc gcttgctcga tatcagtagt
     8221 gataaaattc atcatcttga taagacacta agtgcattcg atgaaaaaat agagcgtttt
     8281 ggtaaaaatt ttgaacttta tgaaaaagca atgttggaaa gtcaagaaaa ggtttttgag
     8341 ggatttaaag caagcttgtt tgaaggtatg cataaattta aagaagtata tgaagaagaa
     8401 aaaagtattg atgctaaaat caaaatgatg gatgagctta aaaaagaaat gaaagcactt
     8461 gatgaagaaa caagtcaaat gatgagcaag ctttctgggg atgaaaatca gaataaagaa
     8521 aatgaaacca aacaaataga agatttttca gagtctaaga ctgaagaaaa tcaagatgaa
     8581 attcaagcag aaatatctaa gcaagaaagc aatgatgagc taaaaaatga agataaagaa
     8641 aataaatgaa aaatgagtca aaagaagata gcaatttttg gatagcttat gctgatttaa
     8701 tggcaggatt gctgtttgtt tttattttgc taataggtgc tattgttgta aaatatgttt
     8761 taactcaaag tgatttaaaa gaaatcaaag ataatctcaa taaacaagag gcacgcttag
     8821 aggagagtaa agaagagctt agaaataaag aagccatagt gtttaaacta agttctgatt
     8881 taaacaatgc ttctagtgct ttaaatcttg ctaattctca aaaagcagaa ttagaggcta
     8941 atattacaaa ttacaagcag ttaagtaaag atttaaactc aactttagat aataaagata
     9001 agcaaatttt gattttacta ggtcaactag agaaaaaaga tgaagagctt aaaaatttac
     9061 aagaagattt tcaaaaagct aaagaaaagg tgcaaaatct tggtttgatt cgtgaaaatt
     9121 taagcaagga attacaaagt aagcttgata ataatatcac tatagatgaa aagacaggat
     9181 ctatttcttt gcctgctgaa gtactttttg ataaagattc ttatgtgtta aaaaatgagg
     9241 caaaggcaag tttgagaaaa atcttaagcg aatattttga tgctattctt gaagatccaa
     9301 aaattttttc taacattgaa aatatcatta ttgaaggaca tactgatagt gatggatctt
     9361 atatttataa tttagatttg tcgcaaaaaa gagcttatga ggtgatgaat tttatctata
     9421 ctttttataa gagtgataag cttcaaaagc ttttaatggc aagtggacgt tctttttcag
     9481 atcccgtgtt tgtcaacgga gttgaagata aggataagag tcgtcgcata gaaataaaat
     9541 ttagcattaa aaatgataat gctttaaaag atgtagaaaa attctttgaa tttcattaaa
     9601 acaattagtc ctatacaaaa aatcaatttt aacggatttg aattttatat taaaagagat
     9661 gatttattag gggaaattaa tggaaataaa gctaggaaac ttgcttttta tatccatcaa
     9721 agatatccta aaaatcaatc ttttgtaagt tatggaggaa gccaaagtaa tgctttggcg
     9781 gcattaagta tttttgctaa acaaagatca tataagcttg tttttgcttg tgaaaaaatt
     9841 tctacttttc ttaagaataa tccttgtgga aactatgctt tagctttaga aaatggtgtt
     9901 gattttgtag aaaatatcca ttctttatcc ttaaagcaat ttgctttgtc tttgtgtaaa
     9961 aaagatgatg tttttataga acaaggtata gctaatttag aagctcaata tggctatatg
    10021 gaacttgctc aagaaattca aatgcaaagt caaagtttaa agcttgattt tgatattttt
    10081 ttaccttcgg gtacaggcac ttcggcagct tttttggcaa agtattctaa atttaaagta
    10141 tttacttgcg cttgtgtagg tgatattaaa tatcttaaaa aacaaatttt aacattagat
    10201 ccaagctatg atttttcaaa tttagaattt ttaacaagtg ataaaaaata tcactttgct
    10261 aagccgtata aagaatttta tgagctttat atggatttaa agttaaagtg caatatagaa
    10321 tttgacttgt tgtatgatat tttaggatta agtatagcat taaaacaaga gtggaaaaaa
    10381 ccattgcttt atatacatca aggtggaatt ttaggaaatt ccactatgtt agagagatat
    10441 aaatttaaaa aatcagttta aaattccata gataaaaatg attaaaataa tcaaaggtac
    10501 tatatatttt acataataaa accaaattcc aaaccatgaa cttttaagtg tattgttatt
    10561 gctaagttct tttagacttt cttgtttgcc taaaatccaa cctacataaa tacagcaaaa
    10621 aaatgcagtt aaaacaaaca aaatatttcc actaatgaaa tcaaaactat caaaaatgtt
    10681 ttttcctttg atgataacaa tatcacgcca aggcccataa gttagaatac aaggaagatt
    10741 gccaagtatg aagataaacc ctagagttag gttaatagaa agatttttag aatatttaaa
    10801 tttttcttct aatacgctaa taataacttg ataaattggc aagcttgtgg ttaaagctgc
    10861 aatcaagagt aagacaaaaa ataaaataca cacaatagtg ccaaaatgga tatgagaaaa
    10921 tgctataggt aaagtttcaa aaaccaaaga aggcccgcta tctggagcaa gtcccgctga
    10981 gaaaagtgct ggaaaaatca taaaaccagc caaaacagct atgatagtat ttaaaacccc
    11041 tgtataaata gcggtttttg ccatattttc atttttatta agatgagatg aaagtgttat
    11101 cattacccca aaacctaggg ataaagcaaa aaagacttgt cctaaaacat cgattaaaag
    11161 ttttggtgat aaaattttac taaaatcagg ttcaagataa aatttaactc cagccatagc
    11221 tccatcaagg gttaaattgc gtcctacaac aataataaga cagataaata ataaaggcat
    11281 taaaaatttt acggattttt ctataccatc tataatgcct ctttttaaaa taatataatt
    11341 aataattaca aaaacagtgg taaaaatacc aactcctaaa ggattgaagg ctattttgtc
    11401 gttaaaaaac tgatgagtaa attctttgct tactacattg gcaagactaa aattccctag
    11461 ggttaattcc caaatataaa ctaaaaccca tcctccaagt accatgtagt aagccattat
    11521 gccaaagctt cctaaaagtc ccatatatcc aatactttgc catttttgtt tgaaagcatc
    11581 tacgctattt gtcatcgctt ttctgcctat gacattttca actaaaataa caggaatgcc
    11641 tatgataatc atggctatac aaaaaactaa tacataagca ccgccaccat tttctcctac
    11701 aagataggga aaacgccaag ttgctccaaa tcctatggtt gctccagcaa ctgttagaat
    11761 ataagttagt gtgctactcc atgtttgtct ttgcatgatt atcctttcga aaaagaatta
    11821 ttttacctaa aaataacttt aaaaacttat aagctatcca tatagcttat atcgtaagta
    11881 ttttttaagc gtttgtgtat cgtttcgtgc caattttgag atatgagaga gtttaatttt
    11941 tctaatttat ctaataaatt cggattttgc ttaagaattt gatgcgggga gtaaaaaagt
    12001 tgattgagtt caaatacact aagtgaagta gaattttttt ctaaaatttt aatgttttca
    12061 tgctttcgta tttgtccaac ttgtaaaact ttataatacc atccactcaa gcccgtttta
    12121 aaaatttcat gtgtaaaatt tggattattg tgaattttag aaatttttac acaaggtttt
    12181 ctaggttcgc ttacttgcag tattgcattt gaaatttgat gtacatcacc tatgcaaaca
    12241 ttttgttcgc aaagcccatc gatgctcaaa ttttcaccca ttgagccaaa atttagcttt
    12301 ttattaagaa atctttccca tataggatag ttttgacaag agttggcaaa aatagcctta
    12361 tggtagcctc catgatgaat tttatcagct atttgatcat ctaaaacacc tagaaaatca
    12421 atttgtgttt cttctaggta agtatcttta ataaatgcgc tttggaaatt tttatagttt
    12481 ttaattttcc ctatttgcaa actttgaatt ttcatggttc tatttttttt aataaatcat
    12541 cagcactgat aaaacccgtg atttttaatt tttcttttcc attttcaaag aaaattaaaa
    12601 caggtgggcc aaaaacatta aattctttca tggttttaat ttgttcatta ttattttcgc
    12661 ttacatcaac tttgataagt ttgtaatttt gcattttttg tatgattctt tcatcactaa
    12721 aggttaattc atctaaaagt ttgcaatttt cacaccaaga tgcagtaaaa tcaagcatta
    12781 taggctttgt atttgtttgt atttcttgct ttaattgttc aaaattgttg atataatcat
    12841 agcttaaagc atgttttgag gcagatatag tattgaaatt taaaggattt aagaaatttt
    12901 tagccccaaa aagtcctcct aggaaaatac ttagagaata agctaaaata agaattaaaa
    12961 tacttttttt aattttagaa attattgtaa aacttttttc aaaaattccc ataaaaacac
    13021 taaaaaatac acctaaaatt ccataggcaa ttaaaatgta attttcttca ataattctag
    13081 aaagtatcca aatagccata gccaacataa caaaaccaaa gaaaattttt actttttcca
    13141 tccaaaaacc aggtttaata aaacctaatc ctaagcctat gaaaagcaaa ggtataccca
    13201 tgccaaaact catgataaaa agtgcactac cacctaataa agcattgcct gtattggcta
    13261 tataaattaa agcacctgct aaaggagctg ctacgcaagg acctactatt aaagcagata
    13321 aaaatcccat gatggctata cctacaactc ccttcccttt ttcgcttttt ttatgtataa
    13381 aggtttgaaa tcttaatggc aattcaaaac gaaaagctcc aaacatagca aaagcaaaag
    13441 ctatgaaaat tagagcaaaa agaattaaaa taataggttt ttgtaaaatt ccttgaatac
    13501 ttgctcctag aaaacttgct ataactccag caatagcata ggctaaagac atgaaaaaaa
    13561 catagataaa agagagaaaa aaactatatt tttttgaaaa tttagcatta ctttttgcta
    13621 cgataagaga agataaaatc ggaatcatag gtaaaataca aggtgttaag gagagtaaaa
    13681 gtccatagcc aaaaaaactt agcaaaatcc aaaaaaagtt atctgttgct aaaaaatttg
    13741 ctatagagct ttcttcagat tcaattttag tttttttatc tgttttttga gctttgtaag
    13801 gttttgaaat ttcaaaagca tcttttttag aaatgagatc aaagtaccaa gtttgaggat
    13861 tataacacaa gccttgttca gaacagcctt gaaattcgag tttgattaaa tttgtggtat
    13921 tttttgcaaa gcgctctagt aataaatttg gcaaagctaa atttaatttt tgataataaa
    13981 cattttcatt acctcttgta gaactttgag gtagattaat caaagaactt atatcttttt
    14041 cgtttatata taatttaagt ttattagaat aaagataaat atcttttcca agttcaatat
    14101 caattgagat agagttatta taagagtttg attttacatt aaaagcttca tttaaagata
    14161 atatagaagc aaaacataaa caaaaactta ataaaataat accaaaaata cgcataaatt
    14221 tcctaaaaac ttattttttc ctttattttt agcttcaatt ataatttatt atggtaaatt
    14281 cactttaaat actttataaa ggtttgaaaa tgcaagaaaa taattctcca aaaacgcaag
    14341 cggttgttaa aaagaatgaa atttatgttt ctgttaaaag aaagaaaagt ataatagaag
    14401 tatgaaaaag atttaaagaa tttgcaaatt gagcttttga aatttcaaaa tcatgttaaa
    14461 gccaagggtt taaaggttct tatacttata gaagggcgtg atgcggctgg aaaaggtggg
    14521 gcgattaaat gtttgattga gcatttaaat ccgcgtggtt gccgcgttgt ggctcttgaa
    14581 aaacctagtg atgtggaaaa aacacagtgg tattttcagc gttatatagc acatttgccc
    14641 tcagccggtg agattgtgat ttttgacaga tcttggtata atcgtgcagg agtagaaccg
    14701 gttatgggtt tttgtacacc gcaacaacat aaagattttt taagagaagt gcctttgttt
    14761 gaaaatatga tttcaaatag tgatattatt ttttttaaat tttatttttc agtatcaaaa
    14821 gacgagcaaa aaaacgtttt gaaaaacgcc gaagcgatcc acttaaacaa tataaattat
    14881 ctcctgtgga tcaaaaatcg caagaattat gggataaata tactttagct aaatactcta
    14941 tgcttttagc atctaatact ccaacttgtc cttggactat tatttcttct gatgataaga
    15001 aaaaagcaag attaaattta ttgcgtttta tactttctaa ggtagaatat ccaaataaaa
    15061 aaactggaga tttttccaaa attgatgcaa aattagtgcg tagtggagaa gaagaaatac
    15121 gaaaaatgga ggcgaatttg gaaaaacttg acagtaaaaa agcagatgag aaaataaaag
    15181 atttagatta aggaaaagaa tgcaaaagct ggttgaaaat ttagcactaa agtactatga
    15241 taaagtagtt gatttaagac atcaaattca tatgcatcct gagcttgaat ttgaagaaga
    15301 aaatacagcc catttagtgt gtaaaatttt agatgagttt ggcattaaat atcaaaaaaa
    15361 tattgcaaaa acaggaattt tagctattat agaaggaaaa aagaagagtc agaaaaaacc
    15421 aaaatgtgtt cttttaagag cggatatgga tgctttgcct gtgcaagaaa aaactaatct
    15481 aagctatgct tcaaaaattg atggtaagat gcatgcatgt ggacatgatg gacatacagc
    15541 agggcttttg ggagctgctt tgatattaaa tgagcttaaa gatgaatttt gtggcacgat
    15601 taaatttatg tttcagcccg cagaagaggg aagcggtgga gctaaaccta tgatagaatc
    15661 aggtgtattg gaaaatcctt atgttgatgc agtttttggt tgtcatttat gggggccttt
    15721 gcttgaaaat actgctcaaa ttgtaagtgg tgaaatgatg gctggaacgg atatttttga
    15781 tttggaattt attggcagag gagggcatgg agctcatccg cacacttgta tagatcctat
    15841 aattatgaca acgcaatttg taaataatat acaaagtgtt atttctagac gtttagcccc
    15901 ttatgaagca ggggtgatta ccgtaggtca aatttgtgca ggaactactt ataatgttat
    15961 tcctacaaat gcttatttaa aaggaactgt gcgcttttta aatgataaaa cgcaagatat
    16021 tttaaaaagt tctttagaag aagtggctgc tgctacagca aaatccaatg gcggagatta
    16081 taagcttaaa tatactaaag aatttcctcc attgattaat gatgaaaaag ctgttttaat
    16141 agcaagaaaa gcttttgcaa aggtcttagg agaagaaaat atcattgttt cttctaaacc
    16201 tgacatgggg gctgaagatt ttgctttttt aacacgagaa agaatggggg cttatgtatt
    16261 tgttggaatt tcaaaggatt taaatcatcc agctttgcat catagttcta ctttttgttg
    16321 ggatgatgaa aatttaaaag ttttaatgca gggtgatgtg atgatggctt t
//
LOCUS       DAPIWU010000032        16345 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.032, whole genome shotgun sequence.
ACCESSION   DAPIWU010000032 DAPIWU010000000
VERSION     DAPIWU010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16345
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.032"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..375
                     /locus_tag="RJ285_000790"
     CDS             <1..375
                     /locus_tag="RJ285_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383587.1"
                     /translation="IYANLIQDPSNKNLLEQLKNKNTNLYTIFLLKENINDLNNTAFQ
                     NELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNKIEEANVLLSQ
                     IKENSSLNQIAKNLKHYQGITQ"
     gene            372..1370
                     /locus_tag="RJ285_000791"
     CDS             372..1370
                     /locus_tag="RJ285_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383588.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIIVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNTQVFKLSEAIDKISFMGNGKFYYGDKILDLL"
     gene            1367..1657
                     /locus_tag="RJ285_000792"
     CDS             1367..1657
                     /locus_tag="RJ285_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HDV7383589.1"
                     /translation="MIKILEQTIKSLKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            1644..2273
                     /locus_tag="RJ285_000793"
     CDS             1644..2273
                     /locus_tag="RJ285_000793"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HDV7383590.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            2391..3737
                     /locus_tag="RJ285_000794"
     CDS             2391..3737
                     /locus_tag="RJ285_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HDV7383591.1"
                     /translation="MGQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVGFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            3786..5228
                     /gene="pyk"
                     /locus_tag="RJ285_000795"
     CDS             3786..5228
                     /gene="pyk"
                     /locus_tag="RJ285_000795"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDV7383592.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRKVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVSIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            5326..5961
                     /locus_tag="RJ285_000796"
     CDS             5326..5961
                     /locus_tag="RJ285_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383593.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIDSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTVNRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(5992..8454)
                     /gene="pflB"
                     /locus_tag="RJ285_000797"
     CDS             complement(5992..8454)
                     /gene="pflB"
                     /locus_tag="RJ285_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HDV7383594.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLVRLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DAGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDITKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(8464..9699)
                     /gene="serS"
                     /locus_tag="RJ285_000798"
     CDS             complement(8464..9699)
                     /gene="serS"
                     /locus_tag="RJ285_000798"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDV7383595.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKTA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDEDENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDALKKYF"
     gene            complement(9710..10669)
                     /gene="trpS"
                     /locus_tag="RJ285_000799"
     CDS             complement(9710..10669)
                     /gene="trpS"
                     /locus_tag="RJ285_000799"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDV7383596.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPKAKVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKMYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(10666..11163)
                     /locus_tag="RJ285_000800"
     CDS             complement(10666..11163)
                     /locus_tag="RJ285_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HDV7383597.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(11150..12532)
                     /gene="der"
                     /locus_tag="RJ285_000801"
     CDS             complement(11150..12532)
                     /gene="der"
                     /locus_tag="RJ285_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDV7383598.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            12634..13566
                     /locus_tag="RJ285_000802"
     CDS             12634..13566
                     /locus_tag="RJ285_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDV7383599.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIAYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFDGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            13563..14378
                     /gene="kdsA"
                     /locus_tag="RJ285_000803"
     CDS             13563..14378
                     /gene="kdsA"
                     /locus_tag="RJ285_000803"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDV7383600.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMCEFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGSNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            14375..14839
                     /locus_tag="RJ285_000804"
     CDS             14375..14839
                     /locus_tag="RJ285_000804"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDV7383601.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            14839..15237
                     /gene="nusB"
                     /locus_tag="RJ285_000805"
     CDS             14839..15237
                     /gene="nusB"
                     /locus_tag="RJ285_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDV7383602.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            15234..16073
                     /gene="pyrF"
                     /locus_tag="RJ285_000806"
     CDS             15234..16073
                     /gene="pyrF"
                     /locus_tag="RJ285_000806"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDV7383603.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETSDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            16070..>16345
                     /locus_tag="RJ285_000807"
     CDS             16070..>16345
                     /locus_tag="RJ285_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383604.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIKF"
BASE COUNT         5826 a         2590 c         2400 g         5529 t
ORIGIN      
        1 atttatgcca atctaataca agatcctagc aataaaaatc ttttagaaca acttaaaaat
       61 aaaaatacta atctttacac tatcttttta ctaaaagaaa atattaatga tcttaataat
      121 acagcctttc aaaatgaact aaaacaaatt tataataatg ctcaaacaaa cactttactt
      181 aaaaatatta ttgcattatc tttaggagat aaatcaatat ttttaaaaaa ttatgataaa
      241 ttattagaag cttacaaact tttagagcaa aataaaatcg aagaagctaa tgttttactt
      301 tctcagataa aagaaaattc aagtttaaat caaatagcta aaaatctcaa acattatcaa
      361 ggcattacac aatgaaaaaa atatttttaa cactattttg tttaatattt ctatgtgctt
      421 gtggcaccaa aagacaatat tttgaaccaa aacaaaccga tggagattta agtcataata
      481 gcaatttaaa aagtaaaatc gttgattgga atctagtttc tgcaaaactt agcaataata
      541 cagctatctt aaaaaataat atttccatag acaagtttaa acttcctaaa aattatatgc
      601 ttctagctta tcaagatggg gaatatttta ctgcagataa taatggaaat ttaaaaattt
      661 ttgacaattc ttataatgaa atttataatt ttcaatttga cgctagtgtt gtaggagtag
      721 cttctaatgg agatgattta gcccttgtac ttgcaaataa tactatagtt cttgcaaatc
      781 gttctttggg tattaaattt agtcaaaccc taacctcagc tccagctcaa gacagtcgta
      841 ccgctaatcc tatattttta gacaatatca tcgtatatcc aacgctagat ggcaaaattt
      901 taattctttc aagaaacaat cttcaagtca ttaaagacgt ggttatttcg gcagaaaatt
      961 ttttcaacaa tgtaatccat ctaagcgtaa tcggagataa acttatagca gcaacagcta
     1021 aaaaaatcat tattgtaagc cccgctagaa ctctttatct tgatgctgac ataaaagatg
     1081 ttgcacttag cgatgatggt atttttatac tagaaaaaga tggcactatt attaaaactg
     1141 attataactt aagaaaaatt gcggaaaaaa aatttgaatt tgctattttt gtaaaaagta
     1201 atatatacaa taattattta tatatttttg aaaaaacagg ctatcttatc aaaatgaatc
     1261 taaatttaga taatacacaa gtatttaaac tttcagaagc tattgataaa atttctttca
     1321 tggggaatgg taaattttac tacggagata aaattttaga tttgttatga taaaaatttt
     1381 agaacaaaca ataaagtctt taaaattaaa tttaaagccc tatgacttaa gtatgttgac
     1441 tagaaaaaaa agttatattt gtgctaaaga tcaaaataac attcttttta tgtatacagg
     1501 aaaaacaaaa tttttaatga aagatgcctt atttttagaa aatctagcac agcaaattaa
     1561 cataaataac aaatattttt ttagcatggc ttctctttgc tctaaagcaa aaaatcatct
     1621 agaaatgaaa ggatttaata tctatgttgc tctgtgatat tgggaattca aatgctaatt
     1681 tcctagatga taacaaatat tttactctta gtatagatca gtttttagaa tttaaaaatg
     1741 aacaaaaaat tttttatatc aatgtcaatg aacatctcaa agaacattta aaaaatcaaa
     1801 aaaattttat caatcttgaa ccttattttt tatttgatac aatttatcaa ggattaggaa
     1861 tcgatcgcat agcagcttgt tatactattg aagatggggt tgttgtagat gcaggtagtg
     1921 ctattacaat tgatattatt tctaattcta tacatcttgg tggttttatc ttaccaggta
     1981 ttgcaaatta taaaaaaatt tatagccata tttcaccacg attaaaaagt gaatttaaca
     2041 ctcaagttag tcttgatgca ttcccgcaaa aaactatgga tgctttaagt tatggtgttt
     2101 ttaaaggaat ttacctactg ataaaagatg ccgctcaaaa taaaaagctt tatttcactg
     2161 gtggagatgg acaattttta gcaaattatt tcgatcacgc aatttatgat aaacttttaa
     2221 tctttcgagg aatgaaaaag attataaaag aaaatcccaa tttactttat taaaaatgtt
     2281 acaaaaattc tcattgatat caaaccttaa tgaaatttaa ctttttgtaa aacaaattca
     2341 attaaacttt atttagaaaa aagtttatta aaataaaaaa aggaaaaaca atgggtcaac
     2401 aagaatttga tgtgcttgtc atcggagctg gaatttcggg agcagcatta ttttacgagc
     2461 ttgcaagata tacaaatatt aaaaatattg ctttgataga aaaatataat acagctgcaa
     2521 cattaaattc taagggaacg agtaattctc aaaccattca ttgtggagat attgaaacca
     2581 attatacttt agaaaaagcg cgaaaagtaa aaagaacagc tgatatgata gttaaatatg
     2641 gactcatgca aaatgcgcaa aataatttca tgttttctca tcaaaaaatg gctctagctg
     2701 ttggagatat agaatgtgat tatatgaaaa aacgctatga agaatttaaa gaactttatc
     2761 cttatataaa atttttcgat aaagcaaaaa tcaaacaaat tgaacccaag gttgttttag
     2821 gagaagattg caatcaagat agacctgaaa atatctgtgc catgggtgtt gaaagcggcg
     2881 aggtttttac aactgtagat tttgggaaaa tgagtataaa tctaatagaa caagcccaaa
     2941 aacaaaataa aaatactttc gttggcttta atcaagaaat tattcacata gaaaaaaaag
     3001 atgatatttt tatattaaaa acctcaaatc atcaagaata ccatgccaaa agcgtagttg
     3061 tcaatgctgg ggcgcactct ttatatttag cacataaaat gaacttaggt atggataagt
     3121 cttgttggcc tgttgcagga agtttttatt taaccaaaca aaaactttta aatggcaaag
     3181 tttatatggt gcaaaatcct aaacttccat ttgcagccct tcatggagat cctgatttgc
     3241 ttgctgatat gaacactcgc tttggaccta ctgcacttgt tattccaaaa ctagaacgtt
     3301 atcatggtct aaaatcagtt ccagaatttt ttgaagcact aaaacttgat aaaactgttt
     3361 taaaagtaac ttttaatatg tttaaagatg caacaattag aaattacatc ttttataatt
     3421 atctttttga actacctttt attgataaaa gcttatttgt taaagatgcc aaaaaaatag
     3481 tcccaagtct taaagcaagc gatatttatt atgcgaaagg ttttggaggc gtaagaccac
     3541 aagttattga taaaactaaa ggagaattaa tgctaggtga agcaagcatc acagaaaccc
     3601 ctggtattat tttcaatatg actccaagtc ctggggcaac aagttgttta ggaaatgctg
     3661 aaagagatgc aaagcttata tgtaattacc taggaatgga atttaacgaa gataaatttt
     3721 cttcagaatt attgtaatca ttttgtttct atttttagct acaataattt caaaaggagt
     3781 ttaccatgct taaaaaaaca aaaattgtag ccacagtagg tccagcaagt gaaaaggaag
     3841 aaattctacg ccaaatgatt atcaatggtg taaatgtttt ccgtttaaac ttttctcatg
     3901 gaacacatga gtatcataaa aaaaacttag ataccataag aaaagtagct aaagaattgc
     3961 atactcgtat tggaatttta caagacatta gcggtcctaa aattcgtaca ggtgaactta
     4021 aagaaccatt tgaattaaaa aagggtgata gacttgattt ttatcgtgaa acaattttag
     4081 gggagaagat tgctcaaaat cattacaaaa tcagtattaa tcaaaaatcc attttagata
     4141 tgttaaaaat tgatgaatat atttatctat atgatggatc aattcgtgct aaagtagtaa
     4201 gcatagatga tcaaaaaatt gaaaccatta tagaaaatga tggtttttta aactcaaata
     4261 aaggtattaa ttttccgaat actaaaatca atattgatgt tattacacaa aaagataaaa
     4321 atgatttact ttggggtata aaaaatgaag tagatttttt agcaatatct ttcgtacaaa
     4381 atgcgcacga tattgatgaa gttcgtgaaa ttttagcaca aaataacgca aaaatatcta
     4441 tttttgcaaa aattgaaaaa tttgatgcag tagaaaatat tgatgagatt attaaatcta
     4501 gcgatggtat aatggttgca agaggagact taggtattga ggtaccttat tataaagttc
     4561 ctaatatcca aaaagaaatt atacaaaaag caaacaatgc ctctaagcct gttattactg
     4621 cgactcagat gcttttttca ttagccaaaa gcaaaaccgc cacaagagct gaaatttcag
     4681 atgttgcaaa tgctgtttta gatggaacag atgcagtaat gctaagtgaa gaaagcgccg
     4741 ttggtataga tcctgcaaac gctgttgata taatgtgcca aactataata gaaacagaaa
     4801 aacgctatcc atataacaaa tttaatgatt ttaatgattt agacaataca gataaaatca
     4861 tgcgttcttc agctcatctt gcaacagatc ttaacgctga tgctattttt tctttaacaa
     4921 gtagcggaaa atctgctatt aagattgcaa gatatcgtcc aaatatagaa atcatagcag
     4981 tagggcattc tgaaaaaacc ttaaactctt taagtatagt ttggggagtt aatcctgcaa
     5041 tcttggttaa caaaagtaat gaacttacag aattattaaa agactctgta agatcaagtg
     5101 ttgaaaaagg ttttatggat gaagacaaat gctatcttct aactgcaggc tttccaacag
     5161 gagtagaagg tactagcaat cttatccgca ttctcaataa agagcaaatt gcttattatc
     5221 tacaataaaa cattaaattc ctttgaaaat aaggaattta atgtccttat aaatttttta
     5281 agccaaaagt cgatataaat taaagcctca cacaaaggag caaatatgca agtgaatact
     5341 ttttcaaata tcgctagcat ggcacaaaca caagttagca ataagaaggc agatgatgct
     5401 aaggaaaaca caaaagacaa aaatgttcaa agtgctaatt ctagcaagga tgtagataaa
     5461 aatacccttg aaaaattaaa tgcacttggt ggaaaaggca ttacacaaat ttacctagtt
     5521 cagtttcaac agcaaacaat gaatgctgta atagattcga gcaatgccca aactggacta
     5581 gatagtcttt taaatggtgc caatttagat actgcgaaat ctatacttac aaatattgat
     5641 tttgcatcct taggctacag tggcaaaaat ccacttgata tgaatacaga tgaacttcaa
     5701 caacttgtaa gtgaagatgg tttttttgga gtggaaaata cagtcaatcg catcgcggat
     5761 tttgttatta aaggcggtgg cgatgatgtt gaaaaattaa aaaaaggtct tgaaggtatg
     5821 aaaaaaggat ttgagcaagc agaaaaaatg tggggtggag aacttcctca aatcagtcaa
     5881 gatacaatag atgcggcact taaaaaagtt agcgatcgca tcgatgaact aggcggaaaa
     5941 actctagatc ttcaagctta actaaaaatg cttagaaatt tctaagcatt tttagttgtt
     6001 attaatatca aaagtaaaaa attcactctt aaaattatta ggtaaagttt tatactgaga
     6061 tatcgcagct tcatagttct ttacttcttg atacaacata ccaagagctg ctttactctc
     6121 tttgttattt ttatctgtaa gtttagaaag ctgcaaaagc gctatagctg aatttggatt
     6181 atttgcacct acggctgcta cggctgctaa aaataaagtt ttagtatctt tagctccata
     6241 atcatcaatc aaagaattat aaagcgcata agcctcctcg tattgctgtg caaaaatatc
     6301 caaataagct aaagtttgta aaataccctc atcttttgct cctgaaacat taatcaactc
     6361 tttaaatttc tgtctttcta aatttaaaag ccctgcaata tgcattaaat taacataaaa
     6421 ttccctagct atatttggcc caccaaaaac actacgataa tcaagtttta aatttttaaa
     6481 atgaatttga gcattttgag catattcttt aatatttaaa tttgaattta aagaattaaa
     6541 atacaaaata tttgccaaaa tatcttcagg caactctgaa cgcaatttag caattttcac
     6601 atctacttga ttattaaggt tattattttt agcaacaata gcttcaaaaa tcaaactcaa
     6661 aggcgtatct ttttttgttt catctaaata aggaagcata gaaatataat tattattaac
     6721 taaaaataac atactttttt gcatattagc tttaaaatta gaatcagcag ctatattatc
     6781 aagaatttca ttgtaaagtt tagttatatc aatatcaatt aattttgcac aaaacatagc
     6841 aaaagcacct gctaagtaat ttttaggatt aagatgatat gaacttgaaa aatgcttata
     6901 agcaagttca taattttgca tttgggcata agttaaagcc aaattataat gtaaaatact
     6961 atgttctgga taatccttga taagtttttg aaattcttgg ttagcaaggc gtaacttctg
     7021 atttaatgca tagttaataa tattggcaat ttttacattg gtagatgaaa gagctttgct
     7081 tatattaaga taaattcccg catcagtact atcatctacg aaatctgtaa cattagcttt
     7141 tttaatatat aaagcagcct gcttactatc aaaaacctga taaggtgcaa aataaaaaag
     7201 caaatcgaat tgatcttttt gtttttttaa caaatctttt gaaaaagaat tttgagcaac
     7261 tgctatatta aaaagatcct tatttaaacg aacttgaatt ttataagtat ctaaaatctt
     7321 atatctatct ttatcgttat cataagaatt ttgcaagcgc actaacatat cttgataatt
     7381 tcctgtttta atatcaacca atgttaaagc cgctaaactc tgattaaaat ctctttcaat
     7441 tttcatcgct gtgcttaaag cgactttagc tttagcatat tctcctattc tagcgtataa
     7501 aagacctaaa gataaactag attcaaaatt gccttgagaa tttaattgct gtatagcctt
     7561 ggaatcaaag tccatttttg cataaatttt agcagacaaa tactttgcaa catcagaata
     7621 cggctccaca tctgttcttt gcaacatttg taaggcctca gggtaatatc ctttgtaata
     7681 attaatcaag cttaaataat aatcatataa ttttgatttt ccttcttttg gaagatacac
     7741 ttgagctaaa tcaatataat atctaaattt ttccttatca ttaagcttta aagcacaaac
     7801 agcagcattg atagcagcta cactttgatt ttctccattg gctatagctt tcttgaagct
     7861 ttcaaaagct tcttggaatt tattctcatt catttgagaa acgcctaaat tataattaga
     7921 taaagattcg ttatatacgg caacttgctc ataaactttt aaagcctgtt caacctcacc
     7981 ctttaaatat aaagcatttg ctttttggat cataccatca attctttgca tatcattgta
     8041 tttatatgat tcatcaggca taacaacagg ttgttctaaa ggcttagaag ctataatatc
     8101 tggtttaatt tttccttcac taaaagttaa ataaaaaagt gtaaaaacta aaatgcaaat
     8161 aatccccaaa gataaaccca caagagacat aaacttacga tctttatacc aaggcgtagg
     8221 ctcttgactt tcaacttctt caaaagttga tacatcttca ggcgcacttt ctcttgtaaa
     8281 tttaaaacca ctatcactat tttcttgagg taattcttct ggcaatgatg caaattcttc
     8341 atcttctgga gcttgcccct cttgcccctt aaatccctct aaactctcat caagtcttgg
     8401 ttgatttaag ccatcttcgg gtttttctag tattatatct tcttgttcag ccatctatac
     8461 tctttaaaaa tattttttca aagcatcagg aatatgaatt tttccttctt tatcttgata
     8521 attttccata atcgctacca aggttcttcc tactgccaaa gatgagccat taagagtgtg
     8581 aacgagttca ttttttcctt gttcgttttt atagcgaatt ttagcgcgtc ttgcttgaaa
     8641 atcacgacaa tttgaaaccg agctgatctc acgatattta ttttgtcctg gaagccacac
     8701 ttcaagatct acagtttttg ccgcactaaa acccaaatct ccggtgcaaa gcatcaaatg
     8761 tctatgcgct aaacctaaag aactcagcaa atcacttgca cactcaagca tttcattaaa
     8821 cacgctatca ctttgctcag gtttagtgat acttacaagc tctacttttt caaactggtg
     8881 ttgtcttata atacctcttg tatcacgccc tgcactgcct gcttcttttc taaaacaagc
     8941 actataacaa gtcattttta tcggtaaagt ttcactagct aaaatttctc cgctgtaaag
     9001 attggttact ggaatttcag aagttgagat caaatacaaa tcctcatcat ctaccttata
     9061 catatcttct ttaaattttg gcaactgacc tgtcccaaac atagtagcac catttaccaa
     9121 aaaaggtaca ttaacaaatt caaatccacg acttctatta aaatctatca tataatttac
     9181 caaagcacgg cttaataaag ctccttcgtt cttaagcaca caaaaacggc tttgtgaaat
     9241 ttttacccca cgcacaaaat caagccaatt taaactctct cctaattcaa aatgctcttt
     9301 tggagtaaaa tcaaagctag gtggatttaa aactttttta agctccacat tttcatcttc
     9361 gtcctcaccc acaggcacac attcatctgg gatatttggg atggcatgag cgatttcttc
     9421 aagctcattt tctaaagcat ttactttagc gctttgctca ttaattttgc ttttattttc
     9481 gcttaatttt gcttttaaac tttctttatc ttcggctgta gcaagttctt tactgaattt
     9541 attttgaaaa gcttgaaatt cttctaaagc tgttttttct ttttttaaac ttgcaaaaag
     9601 ttcagcaagt ttttttaaga tattttcatc aactttttta ttttttaact ttttagccac
     9661 ttcatcaaaa ttattttgca aattttttaa atctagcatt ttctactcct taaagtccga
     9721 ttttttcata aattttttgc attttttctt gggcgatttt tcttgctttt gtcgcaccaa
     9781 aatccaaaat ttctttcaaa tgcgaaggct tttctaaaag ctcattatat ttttctcttg
     9841 cttctttaaa ataagcattt acaagctcgt ttaaatacat tttaaaatgt ccataaccct
     9901 caccaccttt ttcatagcgt atttgtaatt ctttttgccc tgattcatct aaaaaaagct
     9961 ttgcgatttt aaaaatattg cagttttcat gatcttttgg atcttctaaa gcggtgctat
    10021 ctgtaactat ggaagaaatt tgttttttta aggttttttc actgctaaaa atatctatag
    10081 tattttgata agatttactc atttttgccc catcagtgcc tacaactaca gctacttctt
    10141 cattaacttt agcctttgga agggtaaaaa tttcacccca ttcattatta acttttaaag
    10201 caatatcacg tgcgatttca acatgttgga tttgatcttt tcccacagga acaatttgtg
    10261 tatcaaaaag taaaatatca gctgccatta aaacaggata agaaaaaagc ccatgtgaag
    10321 cactaagccc cttagcaact ttatccttgt aactatgcgc acgctctaat aaacccatag
    10381 gagtaaattg cgataaaatc caataaagct ccataacttc cttaacatca ctttgcaacc
    10441 aaaaaacgct tttttgagga tctataccaa ggcttaaaaa agccgcagca gcttttaagg
    10501 aattttgttt aagtttttct ccatcttgag aagaagtcat ggcatgataa ttagcaataa
    10561 acataaacat ttggcttttt tcttgtgcat ctaccatttg cttaatcgca ccaaaataat
    10621 tacctatatg caaatcgcca cttggctgaa ggcctgttaa tactctcatt ttatcacctt
    10681 tttaatctcg cttaaaagct catctatatt tttattttct atatttaaaa taaaatttgc
    10741 cttttgttca tacttgctta aacgctcatt atataatttt tttgctttaa tttcatcata
    10801 aaataaaggt cttttagaaa tttcatcttt gtctaaacgc ttttttaaat attcaaaatc
    10861 tgcttttaaa taaatacaaa aacctgcttt ttctaaattt gaaacattaa caaaaccccc
    10921 gcctgtagca atacaagctt tctcacaaga actaaaaaaa tcagccattt tttgctcttg
    10981 ttctctaaaa aaattttccc ctttttgttc aaaaatttca ctgacttttt gattaaattt
    11041 ttgttctatt aaaaaatcac tatctaaaaa aacaagatct aaatccttag ctaaagctct
    11101 tgctaaagtg ctttttccag aacccataaa tcctataaaa acgatatttt tagctttcat
    11161 cattttcttt actgcccttt ttacgcgaag caatcactaa aggcacacct tcaaaattaa
    11221 attcttttct gatttgattt tgtaaataac gcttatagct aaaatgcaag gccttaggac
    11281 gattcataat aagtgcaatt tttggcggtg ctaagtcata ttgtactgca taataaattt
    11341 taaccaattt cccataatca tgcggcaaag gatgtgctct tgtggcattt tctatcaagg
    11401 tattaagctt agaagtttgg attttttgag tgaaattttc aaaaatttgc aaaattttat
    11461 cgagtaaaac atgcaccctt tttccactta aagctgatac gctaatcacg ggtgcgtaag
    11521 ctagaaattt aaaacgatca agacgcaatt cttttacagt cttatcaaaa tccatctcac
    11581 ttttatccca tttatttaaa acaataatca cacctaaata atgcttagcc acaagcccag
    11641 caatgcgttc atcaagctcg ttaaagccct catgcgcatc taaaaccaaa agtgctattt
    11701 gagaatgaga taaaattttt tccgtgcgat ttagggcaaa gcgttcgagt ccttgaattt
    11761 tacccctttt tctaatacct gcagtatcaa caaattctat cactttatct ttatgaacta
    11821 cactttcatt aacaggatct atagtagttc ctgcaataga acttacaaca ctgcgttctt
    11881 gtttaaccaa agcatttaaa agacttgatt ttccaacatt tacacgccct acaataccca
    11941 ctctgatatg attttgatcg acttctttaa attgaaattc ttttccttct tcataatgct
    12001 ctaaaaaatc ttctaaattt tcttcttcat cggggattaa aaactcttca tgtaaaaatt
    12061 tttcaagcca ttcataaagt tcatctaagc ctacattatg ggttactgaa agattaaaga
    12121 tttcctttac gccaaaattt gcaaactccc aagccctttc ttcatctttt ttattatcta
    12181 ctttattaat cactaaggct ataggttttc caagtttttt taaagaataa aaaaactgtc
    12241 tatcctcatc atcaggcgct aatttcccat caactagata aagtatgata tcgctttctt
    12301 tagctacttt taaagtgttt tttttcacat ttttaaaaag ttcatcactt tcatcaagcc
    12361 ccccactatc aataagcatg gctttttttg aatgaatatg aatttgcgtt ttatttgtat
    12421 ctctagttgt gcctgaaata tcacttgtaa tagctattct ttgtcttgcc attctattaa
    12481 aaaggcttga ttttcccaca tttggcttac ctataagtat aatgctttgc atttttttcc
    12541 tagaaaatta tatttttaaa attatataaa atttggctta atattaagca aaaaaagact
    12601 agaattaacc cagattttag tcaaggaaaa aaaatgctaa aagtaatcaa gcataattta
    12661 ggaatttatt tcatgatttt agcatgtttg gattttgcac ttatgggagc ttgtgcaaaa
    12721 attcttagca aggaaatgag ttctatagaa attatgtttt ttagaaatat cataggaatt
    12781 tttttcatag cctatctttt aaaacgatct aaggcacata aagaaggggg atatttttgg
    12841 ctcttggtat ttcgtggagt agtaggcacg ctttcactat atatgttttt ctataatgtt
    12901 tcaaatatta cactaggtgg agcttttgct tttcaaaaaa ctgctcctat ttttattact
    12961 ttaatagctt ttgttgtttt taaagaaaat attggcatca aaggctggat aggaatttta
    13021 atagcatttg atggagtgct tttaatcgct cagccttggg ctcataattt aaatcattca
    13081 ggctttgatt taaaaaattc agttataggt atcacgagtg gatttttagc cgctttagct
    13141 cttacaagtg taagagaact tagaaaatct tacactacag aacaaattgc cttttctttt
    13201 atccttttag gaaccttaat gcctttaatt tctatgatca gtgctgaatt ttttgaacca
    13261 cagcatcttg attctttaca tttagatttc attctagcac cttttgtgat gccaagtctt
    13321 acagcttggc ttatcattgc cattatggga actttaggca ccatttatca aattcatgtc
    13381 actaaagctt atggtatcgc taaacaagca ggagtggttg ccggagttag ttatcttgat
    13441 gtagtattta gtatgatagt tgggataatt ttgggagata atttaccaag tactatggtt
    13501 tttttaggta taataggcat tatttttggt ggattaattt tagttaagaa caaaggaaaa
    13561 aaatgaaaaa aatgatactc attgctggtc cttgcgtgat agaaagcaaa gatttgattt
    13621 ttaaagttgc tgaacagtta aaaaatttta atgaaaatcc aaatatagaa ttttatttca
    13681 aatcaagttt tgataaggcc aatcgcacaa gtattaattc ttttagaggt cctggtcttg
    13741 aagaaggatt aaaaatttta caaagcgtaa aagatgaatt tggtatgaaa atcttaaccg
    13801 atatacacga aagcaatcaa gcaaaccctg taagtgaagt agctgatgtc ttgcaaattc
    13861 ctgctttttt atgtcgtcaa actgatttac ttgtagccgc agcaaaaact aaggcaaaag
    13921 ttaatatcaa aaaaggacaa tttttaaacc caagcgatat caaatacagc gttaaaaaag
    13981 ttctacaaac ccgtggcata gaagatgaag gctatgaagc tgctcaaaaa aatggtgttt
    14041 ttgtagctga aagaggagct agctttggct atggaaatct agtagtagat atgcgttctt
    14101 tagttatcat gtgtgaattt gctccagtta tttttgatgc tacccatagt gtacaaatgc
    14161 caggggctgc aggtggaagt agcggaggga aaagcgaatt tgtagaacct ttagcaagag
    14221 cggcagcagc cgtaggcata gatggctttt tctttgaaac acatattaat ccttgcgagg
    14281 ctttatgcga tggatctaat atgcttaatc ttacacgcct taaaaattgc gttaatacat
    14341 tactagaaat acaaaatatc ataaaggaaa acaaatgaat attattgaag gaaaattaaa
    14401 tttagactca aatacaaaaa ttgctatcat taatgcaaga tttaatcata tcatcacaga
    14461 tcgccttgta gaaggagcaa aagatgcttt tttaagacac ggaggcaaag aggaaaatct
    14521 aagccttata cttgttcctg gtgcttttga acttccgtat gcgttaaaaa aagctataga
    14581 aagcaaaaaa tttgatgcaa tttgttgcgt aggtgcagta attcgtggct caactccgca
    14641 ttttgactat gtttcagcag aaaccaccaa aggcatagcc aatgtgagtt taaatcataa
    14701 tatccctgta agctttggtg ttttaactac agatacaata gaacaagcca tagaaagagc
    14761 tggaagcaaa gcaggcaata aaggctttga agctatgaca actgtaatcg agatgttaaa
    14821 tttaagcaag gagctttaat ggcaacgcgt catcaagttc gccaaagcgt catctccttg
    14881 ctttatgctt ttgagttaaa ttctcaaaac aacgtttttg tagatgaaat tttagatgaa
    14941 aaaaaaatac gcaatgaaca aaaaaatttt actttaaatt tatataatgg aattttagat
    15001 aatttaaaca atattgatga aaccttaaat tcatttctaa atgataatca aattacagct
    15061 ttaggacatg tagaaagagc tatactaaga cttggagctt atgagttact ttttaccgat
    15121 actcctagcg ccattgtcat caatgaggct atagaacttg ctaaagaact tgctaatgac
    15181 aattctccaa aatttataaa tggagtttta gatgccttaa taaaggctaa aaaatgaagc
    15241 tttgtgtcgc acttgatctt tctacaaaag aagaatgctt acaacttgcc aaagaattaa
    15301 aaaatttaga catatggtta aaagtaggtt taagagcata tttaagagat ggttttaaat
    15361 tcatagaaga acttaaaaaa gttgatgatt ttaaaatatt tcttgatctt aaaattcatg
    15421 atattcccaa cactatggca gatgcttgcg aagaagtatc aaaacttggt gttgatatga
    15481 tcaatatcca cgcaagtgct ggaaaaatag ccatacaaga agttatgaca cggcttagca
    15541 aattttcaaa aagaccttta gttttagcag tttctgctct tacgagtttt gatgaagaaa
    15601 atttctttag tatttataga caaaaaattg aagaagctgt aattaatttt tcaaaaatat
    15661 cctatgaaaa tggacttgat ggtatggtat gctctgtttt tgaaagcaaa aaaattaaag
    15721 agcacacaag ttcaaatttc ttaaccctta ctcctggaat tcgtcctttt ggagaaacaa
    15781 gtgatgatca aaaacgtgtt gctaatcttg caatggctag agaaaatttg agtgattata
    15841 tcgttgtggg aaggcctata tataaaaatg aaaatcctag ggctgtatgt gaaaaaattt
    15901 taaacaaaat acacagaaaa aatataagcg aaaacgatat agagcaaaat tatgaagtaa
    15961 ttcagcaaaa agaatgggat atgtgtaatc actttgaaga atggattaaa actcagcctg
    16021 ataaagaaca tgctttaaaa gaattttatg ctaagtgtgg gataaaatat tgaattatca
    16081 acaattagaa tgcgattact ttaatcttta caatcagttt cttagcgtgg attttcaaat
    16141 ttcattattt gaaaaagatc ataaaggttt aattaaagat tttatatttt tttattatca
    16201 aattttaaaa caaaaagact tgagctactt gcttgaggta agaaataaaa tttccctgaa
    16261 agtttataat tatatgcaag agcactccac ttctccaaaa gatttaagtc ttatttgtct
    16321 aagagaaaat aaacatatta aattt
//
LOCUS       DAPIWU010000033        16263 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.033, whole genome shotgun sequence.
ACCESSION   DAPIWU010000033 DAPIWU010000000
VERSION     DAPIWU010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16263
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.033"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..762)
                     /locus_tag="RJ285_000808"
     CDS             complement(<1..762)
                     /locus_tag="RJ285_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HDV7383605.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKI"
     gene            complement(755..928)
                     /gene="xseB"
                     /locus_tag="RJ285_000809"
     CDS             complement(755..928)
                     /gene="xseB"
                     /locus_tag="RJ285_000809"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDV7383606.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            complement(925..2382)
                     /gene="guaB"
                     /locus_tag="RJ285_000810"
     CDS             complement(925..2382)
                     /gene="guaB"
                     /locus_tag="RJ285_000810"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDV7383607.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQERLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKTKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            complement(2392..3753)
                     /gene="gatA"
                     /locus_tag="RJ285_000811"
     CDS             complement(2392..3753)
                     /gene="gatA"
                     /locus_tag="RJ285_000811"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HDV7383608.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKLGVYIEQFLDKDL
                     SVSGEGVPIAIKDNISVKGWELTSASKILQGYIAPYDASAIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQRARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKN"
     gene            complement(3750..3860)
                     /locus_tag="RJ285_000812"
     CDS             complement(3750..3860)
                     /locus_tag="RJ285_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383609.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            complement(3854..6607)
                     /gene="ileS"
                     /locus_tag="RJ285_000813"
     CDS             complement(3854..6607)
                     /gene="ileS"
                     /locus_tag="RJ285_000813"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDV7383610.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLVFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYDIEVLMPVDDGGCYDETLRAKELLPSHLLEEFIGLHIFKANEKILELLGAKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAIEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNTENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWMLLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENVQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKNEETPCLRCEEVLKG
                     IQC"
     gene            6706..7794
                     /locus_tag="RJ285_000814"
     CDS             6706..7794
                     /locus_tag="RJ285_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HDV7383611.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESTILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAVSGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            7806..8231
                     /locus_tag="RJ285_000815"
     CDS             7806..8231
                     /locus_tag="RJ285_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7383612.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            8295..8915
                     /locus_tag="RJ285_000816"
     CDS             8295..8915
                     /locus_tag="RJ285_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7383613.1"
                     /translation="MNFKELISKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSGSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKA
                     KVDDFLNLTYPFETAVILSLGYKAHEPKYSTQRLNFNEVVEFYKEK"
     gene            8915..9520
                     /locus_tag="RJ285_000817"
     CDS             8915..9520
                     /locus_tag="RJ285_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7383614.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEITRLSPSSLGLE
                     PWKFIVMQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDAYMPFLKSLNQEEKISYAREQAHIALASILYSANALNIASCTIGGFDKQKLN
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            9646..10182
                     /gene="pgsA"
                     /locus_tag="RJ285_000818"
     CDS             9646..10182
                     /gene="pgsA"
                     /locus_tag="RJ285_000818"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDV7383615.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            10179..11285
                     /gene="rseP"
                     /locus_tag="RJ285_000819"
     CDS             10179..11285
                     /gene="rseP"
                     /locus_tag="RJ285_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDV7383616.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLSKLAPQIGSIAPNSAAQDIGLQ
                     KNDTILEINGIRIQSFDEISKHLSLEPLKILIDREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKI
                     PQRAFEYLSYAGMAILLSLMLFATYNDISRIIGE"
     gene            11278..12151
                     /locus_tag="RJ285_000820"
                     /pseudo
     CDS             11278..12151
                     /locus_tag="RJ285_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858448.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
     gene            complement(12129..13484)
                     /locus_tag="RJ285_000821"
     CDS             complement(12129..13484)
                     /locus_tag="RJ285_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HDV7383617.1"
                     /translation="MKHYEVIIIGFGKGGKTLAAKLAMLGKKVALIEEDENMYGGTCI
                     NVGCIPSKSLVKNSLCADKNANWEIKQNFYYNAILEEKQLSAMLRQKNYDKLNALENI
                     TLYLGKASFINEKTLLIQGEKEVQISADRIYINTGSIPIIPDIKGLDQSKNVLTSKEL
                     MAQENLPKHLVIIGGGYIALEFACIYANFGSKVTLLQRNDTFLGKEDKDFADLIFQNL
                     ENKQIDIRLGVQFKEIKDFDQKSIVFFTQDHQDFEIECDMILLATGRKANTLGLSCDK
                     AGIQLDKRGFIIVDDTLKTNKDSIYALGDVNGGLQFTYVSLDDYRIAYAPFRQQNYTK
                     SKRKVIPYSVFIDPPFSRVGLNEKESIDAGYRIKVVKLPVVAIPKAQVLKKTYGLLKA
                     IINEENDEILGAMLFCEESHEMINIVKLAMDTNLKYQVLRDQIYTHPTMSESFNDLFD
                     I"
     gene            complement(13499..13936)
                     /locus_tag="RJ285_000822"
     CDS             complement(13499..13936)
                     /locus_tag="RJ285_000822"
                     /inference="COORDINATES: protein motif:HMM:NF015581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDV7383618.1"
                     /translation="MKKILVLLFMCFSSLFANDDFIYEKSKYNFNELIKRVEQELKDR
                     NLTIFAKFNHYQNALDVNLTLKSNTVIVFGNPIVGTYLMQENPMIGIELPLKILIWQD
                     QNNETFIGYVSLKSKIQKYHIKNTVLVDKIDSLMKDIINISKK"
     gene            14165..14542
                     /locus_tag="RJ285_000823"
     CDS             14165..14542
                     /locus_tag="RJ285_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDV7383619.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLIKNGAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            14551..15102
                     /locus_tag="RJ285_000824"
     CDS             14551..15102
                     /locus_tag="RJ285_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDV7383620.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            15113..15373
                     /gene="rpsR"
                     /locus_tag="RJ285_000825"
     CDS             15113..15373
                     /gene="rpsR"
                     /locus_tag="RJ285_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDV7383621.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(15434..>16263)
                     /locus_tag="RJ285_000826"
     CDS             complement(15434..>16263)
                     /locus_tag="RJ285_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDV7383622.1"
                     /translation="PDELKKHGLKSNELSIDDETIELIISDYTRESGVRNLRRKVAEL
                     CRKSAKKLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDV
                     LKVEAVKIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNV
                     YDSYNIHIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPI
                     GGLKEKLIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLI"
BASE COUNT         5529 a         2813 c         2203 g         5718 t
ORIGIN      
        1 tatcttatca aaaccccaaa gttttcttgc ttcatcactt tttttaggct ctataataag
       61 catttcttct tcagaaccca atttactttc tatctcacca aaagcattaa taaacaaagt
      121 atcgccgtaa aaattccact catcttttgt tttgcctatg cgatttactc ttaaaatgct
      181 tgtagaattt aaaaaagctc ttgtttttaa aagttcttcc catctttgtt tgctttcaaa
      241 ggtacaagca ctaggaacga taaccaaatc aatttttttc gccataatct gttgccaaaa
      301 aatatcaaaa tgtgtctcaa aaccaaaaag caaagcacat tttaattttt cataattaaa
      361 agtaaaaatt tttaattctg atggagtttt gttgctgaaa aatttttctt cattccaatg
      421 ttcataaggc attaaaattt gctgttcata acttttcaca ccatttggag taacttttaa
      481 gcaaagtttt ttataacttt tagcttcaac gcttacataa ggagcgataa tttctaattc
      541 gtatttttta gcaagtttaa tcaagctttc ttttttagct tcgctttgtt cttttatcat
      601 attttttggc atatgcaaaa gttctgtaaa aaaactgttg atcacatatt ctcccaaaac
      661 tactaaattt actccattgt cttttgaagc tttaagataa taatcaagcc ttgattcact
      721 taaagctaaa gttggaaact gtaaagctgc tattttactc atcgatttgc tccacttcta
      781 attttgcttt ttcaagctca agtcttgctt ttttgatact ctctaaacct tctttataaa
      841 tttttacact ttcatctaag gcaagctctt gattatttaa tttttccaaa gattcattag
      901 cgtgttttaa attttcttca aaactcattg atgattaacc ttgtagtttg gtgcttcatg
      961 agtgatagta acatcatgca cgtgactttc tttaagccct gcagtggtaa tttcaacaaa
     1021 ttcggctctt ttttgaaaat cttctatatc tttagcccca acataaccca tagaagaacg
     1081 caaacctcct aaaagttgat gcaccacgct tcttatactt cccacataag gaacacgccc
     1141 ttctatacct tcaggaacga gtttatcttg agcagtacct tgctgaaaat atctatccga
     1201 acttcccttt tgcatagccc caagtgagcc cataccacga taagacttat attgtcttcc
     1261 ttgataagta aaaagctctc ctggactttc atctgttcca gctaaaagcg atcctatcat
     1321 aacagaactc gcacctacag ctaaagcttt tgcgatatca cctgaatatt taatcccacc
     1381 atcagctatc acaggaacgc caaatttatt tgcttcttcc acgcactcat caatggctga
     1441 aatttgaggc acacccacac ctgaaacaat acgcgtagta caaatacttc ctggcccaat
     1501 acctacttta accgcatcta cccctgcttc gcaaagtgct tttgctgcgg ctgcagtagc
     1561 gatatttcct gcgataagat ctaaatttgg atatttagtt ttaatcgctt ttaccgtatc
     1621 aataataccc ttagaatgtc catgcgcaga atcaagcaca acaacatcaa cgccagcttc
     1681 aactaaagca tccacacgat ccatttgccc tactcctata gccgcaccca cgcgtaatct
     1741 tccaaaatta tctttattgg catcaggata ttctttgcgt tttttaagat cttttatagt
     1801 gataagtcct tccaagcgtt cttgttcatc aactatagga agtttttcta ctttgttggt
     1861 gctgaaaatt ttttccgcat catctaaagt acaacccttt ggagcagtga ttaaaggcat
     1921 tttagtcata acattttcaa ccaaatttga aaaatcactc tcaaatctta aatcacgatt
     1981 ggtaagtatg cctattagtt tcttatcttc atctactaca ggaacacctg aaattctata
     2041 ctccgccatg atttctaaag cttccgcaac acttgcttta ggacttacaa aaataggatc
     2101 gataataact ccgctttcgc tttttttcac tctttttact tctctaactt gtgaagctat
     2161 atccatattt ttatgaataa ccccaagtcc tccaagtctt gccatcatga tagcagctct
     2221 atgttcagta acggtatcca tagccgcaga gattaaaggc atatttaaag tgatattttt
     2281 tgtcagttta gtatgaattt ttacttcctt aggtagaact tcagaatacc caggacgcaa
     2341 taatacatct tcaaaagtta aagctctttt tacaattttc atctttcatc cttaattttt
     2401 aatcatttgt tctaaactta aagccccatc taacaaggtt tgttcatcat aagctttgca
     2461 aatcagttgt gctgatatat taagcccttc tttatctttt gcaacaggca cactaatgcc
     2521 tccaagccct gctaaattta cagagatagt ataaacatct tctaaataag tttgcatagg
     2581 gcttttttga gtatcaaatt taaaagccgt tgtaggagtt acaggcataa aaataagatc
     2641 acaatcttgt aaaatttctt catattttgc cttgataaaa gctctagctc tttgcgcttt
     2701 gatataatac gcatcataat atccactgct taaaacaaaa gttcctaaca aaattcttct
     2761 ttttacttct tcgccaaaac cttcgctgcg tgtatttaca tacatttctt ttaaattttg
     2821 gatattttcg gaacgcttac cataacgcac cccatcataa cgacttaaat ttgcacttgc
     2881 ttcagctgtt gcgatgatat aatacgctgc aatatcaaac ttagaatcaa gtaaattttt
     2941 atatacaatc tcatgtccat tagcttttaa catatctata gtttttaaaa gtgcgttttt
     3001 tacttcacta tctgcatcat tgacataatt ttcaatcact gcgattttta attttttatt
     3061 tgcatttaaa tttggagcgg ttttgataaa ctcgatattt gcacttgtgc tatccatttt
     3121 gtcatatcct gcgatcgcat catataaaat tgccgcatct tctacatttt gcgttaaaac
     3181 cccgatttga tccaaacttg aagaataaga agccaaacca tagcgactca ctcttccata
     3241 actcggttta aatcctacac aaccacaaaa agctgcgggt tgacgtacag atcctcctgt
     3301 atcagaaccc aaacttgcca aagccaagcc acccgctacc gcagcagcac ttccaccact
     3361 tgaaccacct ggcacacgct caaaatttaa aggatttaaa gttttgccat aataagaact
     3421 cgctgttgaa cttcccatag caaattcatc catattacaa cgcccaaaag gagaaaaacc
     3481 attagctttt aaattaacaa tcgcacttgc atcataagga gcgatataac cttgtaaaat
     3541 cttactcgca ctagtaagct cccagccctt tacactgata ttatctttta tagctatagg
     3601 cacaccttca cctgaaacac ttaagtcttt atctaaaaat tgttcgatat aaacacctaa
     3661 ttttttttct ttttttgctt tttcattgag ttcttttttt aaattttcaa gttcttcttt
     3721 ggagtatttt aaagcttctt ttaaagttat catttatttt cctttgtttt tttgatcaaa
     3781 aataccgcta aagcactaaa agctaaaacc accgctatag ttgtgatgat aatgctattt
     3841 ggaataggat tttctagcat tgaatccctt ttaaaacttc ttcacatctt aaacaaggtg
     3901 tttcttcatt tttactttga agtttccaac atcttgggca tttacaaagt gaagctttgg
     3961 tgattttaaa tttctcattc tctacttcaa attcagccaa aatttcttca ttttcattgc
     4021 tgatttgact taccataaac caatcggcta attcctcatt tgggaattta ttaaaactga
     4081 tgtttaaatt taattccaaa gtagatttaa tgattttatc ttttttaagt atatcaattt
     4141 gttcaaaaaa tttctctcta gcgctcatta aaaatgtatc atctatacca aaatcataat
     4201 caaaatcttg agttaaactc agatcaaata catcttttgc atcaccttta attaaaacat
     4261 tagcatgttc taaagcctca tctacactat agcttaaatt tggagcaagc aaatttaaaa
     4321 gctcttttgc tatcaaagcc atagctactt gagcagattt tcttctttgg acattttcac
     4381 tatcgcaata aagtctatct ttactgatat caagataaat cccacttaaa tccgcactta
     4441 agaaatttaa aagcaaacta aaacctttag caaattcata agcaaaaaat gcttctttac
     4501 ttgctttaaa aactttagtt gcacggctta atatccattt atcaataaag ctaaattctt
     4561 taacttctaa atcttttaaa tcattagtat tagcaagtaa aaatcttata gtgtttctta
     4621 ttttgcggta ttgttcgcct acttgtttta agatattgtc tgaaattttt aaatcacttg
     4681 aataatcact taaaagcatc caaagtctta aaatttcaac tccataggtt tttgctacat
     4741 attcaggagc aatcacattg cctttagatt tagacatttt ttgccctttt tcatcagtgg
     4801 taaaaccatg agttaaaatg ctttcataag gtgcactttc attgatcgct gtacctacaa
     4861 gcaaagagct ttgaaaccaa ccacgatgct gatcgcttcc ttctaaatac atacttgctc
     4921 ttttttctcc tgcgtcataa agtccgctat ttaaaaccgc attaaaagta cttccactat
     4981 caaaccaaac atctaaaata tcatatactt tttctaaatt ttcagtgttg tattttgagt
     5041 ttgtaggaat taaatctttg atttcaaact cccaccacgc atcagcaccg tgtttttcaa
     5101 aaatagctgc tacaaagtca aaaagttcat catcaaaaat cacttcttta gtgtttttat
     5161 ctctaaaaaa ggctataggc gttccccagt ctctttgtct tgaaatacac caatctgggc
     5221 gattttccac catagagcct attcttttta ctccactttg tggataaaaa gttgttttta
     5281 aaagttgttc tattgcacac tctcttaaag tttttccttg aagttttggc tcatccatta
     5341 aaataaacca ttgtttagta gctctataga ttacaggctt atgtgttctc cagcaaaacg
     5401 gataagagtg tataaattta gaagaatgca acagttttgc gcctaaaagt tctaaaattt
     5461 tttcattggc cttaaaaata tgaagaccta taaactcttc aagcaaatga gaaggcaaaa
     5521 gctctttagc tcttaaagtt tcatcataac atccaccatc atcaacaggc attaaaactt
     5581 caatgtcata tttcaaacaa gcataataat catcttcgcc atgtcctggt gcagtatgca
     5641 caagtccact tccaccatcc atcaatacat gctcacccat gattaaaaca gattttcttc
     5701 catttaaagg attgatagct tcaagttttt caaattcttt tgcgtttagt tctttttgaa
     5761 tttctccact tgtaagtcct ttttctacca tgcttttaag taaagcactt gcaaaaacca
     5821 aaccctcttt agtgatcaca taattttcat taggatttaa agctatagct tgattagcca
     5881 ccaaagtcca aggcgtagtt gtccatatca ctgcacttgc ttttgaaacg cctaattttt
     5941 cacaagcttt tacatccaaa tcaaaagcca caaagataga ataatcttct ttatcttgat
     6001 attctacctc agcttctgcc aaagctgact ttgccgccca actccaaaaa acaggtttag
     6061 aacgctcaca aagtaagcct tttttagcaa tctcgcataa agttctataa atcgctgctt
     6121 caaactcaaa tttcatagtc aaataaggct tatcccaatc cgcaataatg cctaaatttt
     6181 taaattcttc tctttggata tctacaaatt cactcgcatg ttgtctgcaa aactcacgaa
     6241 tttctttctt gcttaagctt tttttctttt ctccaagctt tacttctact tgttgttcta
     6301 taggtaaacc atgacaatcc caccctggag taaaacgcac actctcacct ttaaaataat
     6361 gcgttttgat aatagtttct tttaaaattt tatttaaagc atgtcctata tggatatgtc
     6421 cgttagcata aggggggcca tcgtgtaagg taaaactttt tttcgcattt ttgcgatttt
     6481 ctttcatttt ttcataagca taattttgct caaaccattt tttaaatctt tgcggttcaa
     6541 gttccgctaa attcgcccgc atagcaaaag tagtgctggg caaaagtaga gtttctttgt
     6601 agtccatttt ttccacctaa tttttaataa tcttaaattc tactcaaatt agctttaatt
     6661 tctactttgt ttttggctat aattataaga aaaaaaggaa aatttatgaa acatttgctt
     6721 tatcttatag gagatgagct tactataaac gaaaaattca aaaattatat ttatagaact
     6781 tatgaagaaa aatttaaaga aatcaacgaa attcgcatac aaaataaaac cgataaagat
     6841 ttaccctttt tgcttgaaaa cctcttaaat cagtatgatt ttatcacttt atttacaagc
     6901 cctttgcatt atgcgactgt tgctaaaatt ttagcaactt taaatgatga taatcttatc
     6961 ttaaaagatg ataccttggt tccagataaa gcagaattta gtaaaaatag ctttgtgtgt
     7021 aatttttcaa attcaaaaat taatgtcgtt aaaataaatc caagcgaaaa attacccaat
     7081 cttcttgggc atataaaatt aaattttgca tatttttgca tttttggcat ggatgatgaa
     7141 agcactatat tgctactgca aaccctaaca aaatcttatg agataagtat aaaatcaacc
     7201 aagcttttag ataatcttgt gcttattaag gccacttgcg ctaattttgg aaaacttgat
     7261 ggttttttaa atagcgtaaa aaatcttttt ggacaaaagg tatttttagg taaagatccc
     7321 atacatttta taagctctaa acttttagaa aaaaaattaa aaatttcttt tgctgaaagt
     7381 tgcacaggtg gactttgtgc aagtacctta accaaaattt caggtgtaag tgaaattttt
     7441 gaaggttcta ttgtaagtta ttccaaccgc atcaaacacg aatggcttgg aattagcgaa
     7501 agcgtcttag aaaataatgg cgaatacagt gaacgttgtg tttattttat gctaaaaggt
     7561 atttttaaaa cagctaatcc tgattttgcc ttagctgtta gcggagtagt tggcgaaaaa
     7621 gatgagggaa aaataaaatc aggcactatt tatataggtg caatgtttag agatggaact
     7681 tttatccaag aaacgcttta tttagatgga gatcgtgaat ttatgcaaga acaagctgtt
     7741 ttggcaactt tttgcttact tttaaaatta aaacctgaaa tttttgaaat ttaagggatt
     7801 taaaaatgaa agaaattaag ctaaaagaag acttggaaaa aatttatccc ttgataaaac
     7861 aattaagaaa taacctatct ttgaaagatt ttttagacaa aatccaactt gctacacaaa
     7921 ctcaacatta taaacttttt gcctatgaaa atgagggaag ctacaaagca gcttgtggag
     7981 tcatgccctt taatgtactt tatcataatc attgtcttta tatttgtgat tttgtcgtag
     8041 atgaagcttt aagaggaaaa ggtataggtc aagctttttt gaaaaaaatc caaatttggg
     8101 caaaagatca aggatatgaa gaattagaac taagttcaag tttttttaga acacaagctc
     8161 atgaatttta tatccaaaaa atgggttttg aaaaatccgg ttttgttttt aagaaaaata
     8221 tcaaactata atattttttg attaagcttt gcattttata attaatatta ttatttttga
     8281 ttttaaggaa taaaatgaat tttaaagaac taatttcaaa acgcagagct tgtaaacttt
     8341 ttaatgataa aaaaatcaat gaaaaggatt tgcattttat cttagaaagt ggagtcttag
     8401 ccccaagctc acatggattt gagccttgga aatttgtagt attagaacaa aaagaacaca
     8461 atcttaaact ctcaacccta tgttacaatc aacaaaatgt agcaagtgca agtcataata
     8521 ttatttttct agcaagaaaa gatcttcaaa gcaaagatga atttgcacaa aaacaagtgc
     8581 gtcgtttctc aggttctagc gaagaaaatt ttcaaaaaat tttagaaatt tatactcata
     8641 aaaccaatgc aatgaatgat aatgaactct atcattatgc acaacttcaa tgctatcttg
     8701 ctatgatgca aatgtcacta gctgcaatga gcttaggtat tgattcttgc atgataggtg
     8761 gctttgaaaa agctaaggtt gatgattttc ttaatttaac ttatcctttt gaaactgccg
     8821 taattttatc cttaggatat aaagcccacg aaccaaaata ttctactcaa cgcttaaatt
     8881 ttaatgaagt cgtcgaattt tacaaggaaa aataatgaaa aaagaacttg aaatttttag
     8941 cacaagatat tcttgtagaa attttaaaaa tgaaaaactc aaaaaagagg atttaaattc
     9001 tattttagaa ataacaagat taagccccag ttccttagga ctggaacctt ggaaatttat
     9061 agtaatgcaa gatgagaaaa gaaaagaaga actttctaaa atttgcaacc aacaaaaaca
     9121 tgtaaaagat tgcgctgcat taattatcat catttcaaga cttgattttt tagattattt
     9181 tgaagaaaaa cttagaaaaa gagatatgag tgaaacagaa attcaaaaac gcttagatgc
     9241 ttatatgcct tttttaaaat ctctaaatca agaagaaaaa atatcttatg caagagaaca
     9301 agctcatata gctctagcta gcatacttta cagtgctaat gctttaaata tagcaagctg
     9361 cactataggt ggttttgata aacaaaagct taattcttat ttatcacttg atattcaaaa
     9421 agaaagatca agtttggtgg tggctttagg atattgcaac gatgaaaaaa atcctcaaaa
     9481 aaatcgtttt agttttgatg aagttgtaaa atttatttaa attttgctta aaagcaaaat
     9541 ttaaataaaa ataaactgat tctttttttg tatttttact aagtctttgc ttaaatttta
     9601 tacaattttg attataattt tacatttaat ttcacaaggc ttgttatgaa tttacccaat
     9661 atcttggcga tttttagaat ggttttagcg cctttgctat tttttttatt aattcatcat
     9721 tttgaaaata ttcatcaaag ttggattaac tattttgctg ctttaacttt ttcattagcg
     9781 gctttaagtg atttttttga tggatacatc gcaagaactt ggaaacaaac cacaaaactg
     9841 ggcggaatct tagatccatt agccgataaa atgcttgttt tagcagcttt tttagggctt
     9901 ttacttacag gaaaagctaa tgaatgggta atttatatta tattagtaag ggaatttttt
     9961 atcacaggtt ttagagttgt aatgattagc gaaaatttaa atgtcaatgc ttcttttgca
    10021 ggcaaactta aaaccgcttt tcaaatgact gcgataggat ttttaatcat ggagtggata
    10081 ggcggtgaaa ttctacttta catagctttg attttaactc tttattctgg atttgaatac
    10141 atctatactt atataaaagc tcaaaaaaaa ggagaaaaat gagatcttta ttgtttttaa
    10201 ttgttatttt gattttggga attaaatttt attctattga atttttagca actgttttag
    10261 tcatctcatt tttaattttc tttcacgaat taggacattt tttggctgca agatctttgg
    10321 gtgtaaaagt tgaagtcttt agtataggat ttggaaaaag tcttatagag cgtgaattta
    10381 aaggcacaaa ctatcgctta agcactttac cacttggagg atatgttaaa cttaaaggac
    10441 aagatgatat gcgtcctggt tttgaaaatc tagacaaaga tagctatagc attttaagtc
    10501 ctttaaaaaa gatttatatt ctttttgctg gaccattttt taacctgatt ttagcttttt
    10561 ttctttatat tatcatagga aatttaggtc taagcaaact tgctccgcaa ataggaagca
    10621 tagcgccaaa ctctgctgca caagacatag gacttcaaaa aaatgatact atcttagaaa
    10681 ttaacggtat aagaattcaa agctttgatg aaatttcaaa gcatttaagt ttagagcctt
    10741 tgaaaatatt aatcgataga gaaggaaaaa atttagaatt tattttaact ccaaaaatag
    10801 gacaaggata taatgacttt ggacaaatcg ttgaaaaacc tcaacttgga gtcagtccaa
    10861 atgggacaag cactcttgta aaacaccaag gtttagaaag ttttaaatat gccgcacaag
    10921 aaagttttca agcttccaca cttatcatca agggtattgt aaaactcata agtggtgaag
    10981 ttgaagcaaa aaatttaggc ggtattatca ccatgactga aattacctca aaggctgcac
    11041 aaaatagctt tactttgctt ttatttatca ctgctttaat ttctataaat ttaggtattt
    11101 taaatctttt acctattcct atgcttgatg gaggacatat actttttaat ctttatgaaa
    11161 tgatttttag acgcaagatt ccacagcgtg cttttgaata cttaagttac gcaggcatgg
    11221 caatactttt aagtttaatg ctctttgcaa cttataatga tatatcaagg attataggtg
    11281 aataaaaaat tttcctaccc tattccaaat tttactgata gaagaaaaag tatcatcttt
    11341 tggtgctatt tgcgttttca agcaagaaaa attctatatt ttcctcaagt aaggcttcta
    11401 gaaaaaacgc ttaatgaaga aaaaaataaa catttaaaag actttttctc tcaaagaccc
    11461 tatgcttgct acaatgctat aagaagattt tgcgataaaa gttttaaagc aaatgaacgc
    11521 gttaaaacac ttatttatga tgttgataag ggacttactt gttttaaatt tcttcccgaa
    11581 gaacaaatga ttttttcttt tgatgaagat tttgagcttt ttttaggata taaccataat
    11641 gtttacgaag aaggtttttg ggctttttct ttaaaattta aaaaatacac tatttcacaa
    11701 tgtaattttt gctttacttt agaaaataat cttctacttt cttgcataca aggatataaa
    11761 tacaaagatt ttaatatttt agaaattaat aaaattttaa ctaaaaaatg tcatggtttg
    11821 cgccctgttg ctttacttat agaatgctct aagatgcttt gtgaaatttt aaaacttcaa
    11881 gctactttag gtgtacatga aaaaaatcaa atccgttctc aaaaaggaaa agaaaaaggc
    11941 tattttgtag attatcaaaa aatttggcta gaaaatggtg gagaattaat aaaaatcgat
    12001 aaacacaaat actacaagct ccaccactcg caaaaaaaac ctagaagaaa tcccttcgca
    12061 aaaacgctcc atgtataaaa aacgtttcac tatgcttgaa ggtattaggc aaaatctaaa
    12121 aaatttattt agatatcaaa taaatcatta aaagactcac tcattgttgg gtgagtataa
    12181 atttgatctc ttaaaacttg atattttaaa ttagtatcca tagcaagttt aacaatatta
    12241 atcatctcat gagattcttc acaaaaaagc attgctccta aaatttcgtc attttcttca
    12301 tttatgattg cttttagtaa accataagtt tttttaagaa cttgtgcctt agggattgct
    12361 acaacaggca attttaccac tttaattcta taacctgcat caattgattc tttttcattt
    12421 aatccaactc ttgaaaaagg aggatcgata aagacactat aaggaataac ctttctttta
    12481 gattttgtat aattttgttg cctaaatgga gcataagcta ttctataatc atctaaagaa
    12541 acataagtaa attgtaaacc tccatttaca tcacctagag cataaataga atctttattt
    12601 gtttttaaag tatcatcaac aataataaaa cctcttttat cgagttgaat gccggcttta
    12661 tcgcaactta atccaagagt atttgccttt cttcccgttg ctaataagat catatcacat
    12721 tcaatttcga aatcttggtg atcttgagta aaaaacacta tacttttttg atcaaaatct
    12781 ttaatttctt taaattgaac tcctaatcta atatcaatct gtttattttc taaattttga
    12841 aaaattaaat ctgcgaaatc tttatcttct ttacctaaaa aagtatcgtt cctttgcaat
    12901 aaggttacct tagaaccaaa attagcataa atacaagcaa attctaaagc aatataacct
    12961 ccacctatga taacaagatg cttaggtaaa ttttcttgtg ccattaattc tttgcttgtt
    13021 aatacatttt tactttgatc tagtcctttt atatctggta taataggaat cgagcctgta
    13081 ttaatataaa ttctatcggc actaatttga acttcttttt cgccctgtat taacaaagtt
    13141 ttttcattaa taaaagaagc ttttccaaga tatagagtaa tattttctaa agcatttaac
    13201 ttatcataat ttttttgtct taacattgca cttaattgtt tttcttctaa aatagcattg
    13261 taataaaaat tctgttttat ttcccaattt gcatttttat cagcacaaag agagtttttt
    13321 accaaagact tagaaggaat acaaccaaca ttaatgcaag tccctccgta catattttca
    13381 tcttcttcta taagagcaac tttttttcct agcattgcaa gttttgccgc taaagttttt
    13441 ccacccttac caaagccaat aataataact tcataatgct tcatttctct tccttaattt
    13501 attttttgct tatattgatg atatctttca ttaaagaatc tattttatct actaaaacag
    13561 tatttttaat atgatatttt tgtatttttg attttaaact gacataacct ataaaagttt
    13621 cattattttg atcttgccag attaaaattt ttaaaggtaa ttcaatacct atcattggat
    13681 tttcttgcat caaataagtt cctacaatag gattaccaaa cactataact gtatttgatt
    13741 ttaaggtcaa attaacatct aatgcatttt gatagtgatt aaattttgca aaaatcgtta
    13801 aatttctatc tttaagctct tgctcaactc tttttatcag ctcattaaaa ttatatttac
    13861 ttttttcata aataaaatca tcatttgcaa ataaactgct aaaacacata aacaacaaaa
    13921 ccaatatttt tttcaatttt aatccttgct caattaaggt cgtattttaa aaaacattgc
    13981 attataacag tcgaaagtaa atcaaaacaa atccattgct tattaattgt ttgataatgg
    14041 caatgataat ttacatatta acttcattga agtataaatt aagtatatta tagtataatt
    14101 tgctcttgct ttaatgcaaa atccttgctc ataaaaatgg gctttatatc cataaggaga
    14161 aaagatgaaa cattatgagg ttttatttat cttaaaacca acgcttaccg aagaggaagt
    14221 gaatgcaaag ttggaattcg ttaaagaagt cctaatcaaa aatggtgcag aaattgaaac
    14281 tgttgttcca atgggcacta gaaaattagc gtataaaatc aaaaaatatg aaagaggaac
    14341 ttattttgtg atttatttca aagctcctac aaacttgatc gctgagcttg aaagggtgtt
    14401 aagaatcact gaagaagtaa taagattttt aatcgtaaaa tatgaaaaca aaaaagaaat
    14461 tgcagcttgg gaaaaactaa gccacgggat taagcaatct aaaaaagaaa tcaaaccttt
    14521 agatgctcct gaaattcaat aaggaaaaag atgtttaaca aagttgtttt ggttggaaat
    14581 cttacacgcg atatagaaat gcgttatgca caaagcggta gtgctattgg agcttctgct
    14641 atcgcagtaa caagaagatt taccacaaat ggagaaaaaa gagaggaaac ttgctttatt
    14701 gatataagtt tttatggtcg caccgcagaa gttgcaaacc aataccttac aaaaggttca
    14761 aaagtactca tagaaggacg tttgagattt gaacaatgga gtgatcaaaa tggacaaaat
    14821 cgctctaaac atagcattca agttgaaaat atggaaatgc ttggcaattc caatgctcca
    14881 caacaaggcg gaaattttgg caataatagc ttttcaaaca acaattatag tggaaactat
    14941 gaaaatcaaa gctatgatcc ttatatgagt gaaaatcaaa attttaataa agcaaaaaca
    15001 aaccctactc cacaaagaaa ccaaaaccca caacacgaag aaaaattaaa agaaattgat
    15061 atcgatgctt atgatagcga tgatactaat ttaccatttt aaaggataaa ctatggcaga
    15121 aaaaagaaaa tactctcgca aatattgcaa atacactgaa gcaaaagttg aatttattga
    15181 ttataaagat acagcaatgt taaaacatgc tttatctgaa agatttaaaa tcatgccacg
    15241 ccgtttaaca ggtacaagca aaaaatacca agaaatggta gaagttgcaa tcaaacgtgc
    15301 aagacatgta gctcttatcc cttatatagt ggatagaaaa gaagtaatca ataatccttt
    15361 tgaaggacta taatctttta aaagcaaact tgtaaaaagt ttgctttctt atacatttat
    15421 tctcaaaata aaattaaatc aaagtatatt ctaagacatc actaaaagta tcaacagcaa
    15481 tgatttccat attgtctcta acctcactag gaatatcttt taagtccctt tcgtaatttt
    15541 ttcttgggat taaagctgtt tttatatctg ctttataagc tgcaattaat ttttctttta
    15601 atccgcctat tggtaaaact tttcctttta aatctatttc acctgtcatt gcaacatctg
    15661 ctttaacctt tttatcacta aaaatagaag caatagctgt gcttatcgta atgcccgcac
    15721 ttggaccatc ttttggagta gctccatctg gcacatggat atgaatatta taactatcat
    15781 aaacattaac tttaggatcg ataattattt ttttaggtat ttttattttt ccttcatcga
    15841 ttaaaacttt tatcatgcta aaagcaattc tagctgattc tttcattaca tcacccaaac
    15901 ttcctgtgag cgttaattct cctttacctt taatttttac agcctctact tttaaaacat
    15961 ctccacctac acttgtccaa gccaaaccat taacctgacc tacttgattt tctccattat
    16021 ttttttctat ttcaaaaact tttttatcta aaaattcatt caaatttttt gtattaataa
    16081 tgactttttt aatattttct aaaagtagtt ttttagcact cttacgacac aactctgcca
    16141 ctttgcgacg caaatttcta actcctgatt cacgagtata atcactaatg attaactcta
    16201 tagtttcatc atcaatagat aattcattgg attttaagcc atgtttttta agctcatctg
    16261 gaa
//
LOCUS       DAPIWU010000034        16186 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.034, whole genome shotgun sequence.
ACCESSION   DAPIWU010000034 DAPIWU010000000
VERSION     DAPIWU010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16186
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.034"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            103..492
                     /locus_tag="RJ285_000827"
     CDS             103..492
                     /locus_tag="RJ285_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HDV7383623.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFIFIVLLGVGFLYAYKKGAFAWQSIK"
     gene            474..977
                     /locus_tag="RJ285_000828"
     CDS             474..977
                     /locus_tag="RJ285_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HDV7383624.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            974..1768
                     /locus_tag="RJ285_000829"
     CDS             974..1768
                     /locus_tag="RJ285_000829"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HDV7383625.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFVADKNGFEVF
                     YQLLNLEKRLRVRIKTFVGVKERLQSVAHIFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            1770..2996
                     /gene="nuoD"
                     /locus_tag="RJ285_000830"
     CDS             1770..2996
                     /gene="nuoD"
                     /locus_tag="RJ285_000830"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HDV7383626.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            2993..3220
                     /locus_tag="RJ285_000831"
     CDS             2993..3220
                     /locus_tag="RJ285_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HDV7383627.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            3217..3909
                     /locus_tag="RJ285_000832"
     CDS             3217..3909
                     /locus_tag="RJ285_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383628.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKEVKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSFKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            3906..6368
                     /locus_tag="RJ285_000833"
     CDS             3906..6368
                     /locus_tag="RJ285_000833"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HDV7383629.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFIPHIHKNGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVVGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            6361..7359
                     /gene="nuoH"
                     /locus_tag="RJ285_000834"
     CDS             6361..7359
                     /gene="nuoH"
                     /locus_tag="RJ285_000834"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HDV7383630.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVSII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            7369..8010
                     /gene="nuoI"
                     /locus_tag="RJ285_000835"
     CDS             7369..8010
                     /gene="nuoI"
                     /locus_tag="RJ285_000835"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HDV7383631.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDVMIERALENQNTQEQGENK"
     gene            8007..8525
                     /locus_tag="RJ285_000836"
     CDS             8007..8525
                     /locus_tag="RJ285_000836"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HDV7383632.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSTIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTHKELTKEKQ"
     gene            8522..8818
                     /gene="nuoK"
                     /locus_tag="RJ285_000837"
     CDS             8522..8818
                     /gene="nuoK"
                     /locus_tag="RJ285_000837"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HDV7383633.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            8820..10610
                     /gene="nuoL"
                     /locus_tag="RJ285_000838"
     CDS             8820..10610
                     /gene="nuoL"
                     /locus_tag="RJ285_000838"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HDV7383634.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGAILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPQFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            10612..12099
                     /locus_tag="RJ285_000839"
     CDS             10612..12099
                     /locus_tag="RJ285_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HDV7383635.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLILLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLLFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            12089..13477
                     /locus_tag="RJ285_000840"
     CDS             12089..13477
                     /locus_tag="RJ285_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HDV7383636.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHALFMKNDRVHNIKFSFIQNFILAFC
                     VCVSTFVILLML"
     gene            13499..15865
                     /locus_tag="RJ285_000841"
     CDS             13499..15865
                     /locus_tag="RJ285_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HDV7383637.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIVGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(15908..>16186)
                     /locus_tag="RJ285_000842"
     CDS             complement(15908..>16186)
                     /locus_tag="RJ285_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7383638.1"
                     /translation="VVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQTAG
                     ITQINDSVAQIDQTTKDNVEIANESAIISSTVSDIANNILEDIKKKRF"
BASE COUNT         5128 a         1951 c         3048 g         6059 t
ORIGIN      
        1 ttaatataag tttcaatata gaaagtttag agtaaaataa agaaaagtgt aaatttaatt
       61 tttgttgtgg agtgattaaa gtgctttaaa aaaggagaat aaatgtctca tatagatgct
      121 tcgcatcctt attttggtat ttttttaatg ctagtacttg ctagtgttat ttttttcgga
      181 ctggtttttt tagcttcaaa aatcggtaat aattttgccg caaaaaatcg caaaaaatta
      241 ggacttggaa tttatgaatg tggtcctatt cctgttaaac aagctaacaa gattaactct
      301 caatttttca tcatcgcctt aatcttcata cttttggata tagaagttgt gtttttattt
      361 ccttgggctt tgatttttaa agatttaggt tggtttgggc ttttagaagt ttttattttt
      421 atcgtacttt taggagttgg atttttatat gcttataaaa aaggagcgtt tgcatggcag
      481 agcatcaagt aaattatgca agtggtttgc ccgtagtttt aactagtgtt gataaactag
      541 ttcaatgggg caggagtaat tctttatggg ctttatctta tggacttgcc tgttgtgcga
      601 ttgagatgat ggcggctggg ggttcaagat atgattttga tagatttgga acgattttta
      661 gagcttcacc acgccatagt gaagtgatga ttatcgcagg aactttatgt aaaaagcatg
      721 ctgaatttac aagaagactt tacgatcaaa tgcctgatcc taaatgggtg atttctatgg
      781 gaagttgtgc caatacaggc ggtatgttta atacttattc tacggttcaa ggagtggata
      841 gaattatacc tgtagatatt tatgtgccag gctgtgctcc acgccccgaa agttttcagt
      901 ttgctttgat gattttgcaa aaaaagatcc gcaaagaaaa agcaagtcgt aaaatcgcac
      961 ctaaaaggtt ggtataatga gaaagtatag cgataaaaaa aatgctcaaa ctcaaaatta
     1021 ttacaaagat agattttatc acgcgccaca cactgtaaaa tctgatgtta atgaaagtgt
     1081 ttttaaagag gattttgaag ttttaaaaac tcaagtagaa attttaaatt cctttgtaga
     1141 gcttgatttt tgggtaatag aaattaaaaa agaagacaat gttaaaacct tgcaaatgct
     1201 taaaacttta gggtatttaa gttttacaga ggcaagtgct attgattttg tagcagataa
     1261 aaatggtttt gaagtgtttt atcagctttt aaatttagaa aaaagattaa gagtgagaat
     1321 aaaaactttt gtaggcgtaa aagagcgttt gcaaagcgtg gctcatattt ttaaaggagc
     1381 aaattggagt gagagagaaa tttatgatat gtttggaatt ttcatcataa atcatcccaa
     1441 tttaaaacgc attttaatgc ctgatgattg gtttggacat ccgcttttga aaacttatcc
     1501 tttaaagggc gatgagtttg caagatggta tgagattgat aaaatttttg gcaaagaata
     1561 ccgcgaagta gtgggcgaag aacaaagaga ttctggtttt gctgatgata aagatacgct
     1621 aaattttgca agactttatc atgaagtgcc aaaaggtggt caaaagaagg aaatttcctt
     1681 taaacaagaa tatcaagaag atgaaggcgt ggcttttgta aaaaaagtaa aacgtgatga
     1741 agcaaaaatt ttagagaaaa ggcgttaaaa tgcaaattcc tagcaagtta aaaccttatt
     1801 atgaaaatat agcttttgag caagaagact caaaaatgat tatcaactta ggccctcaac
     1861 atccttcagc acacggaaat ttacgcctta ttttagaact tgatggagag caagttgtaa
     1921 aagcgcgtcc ttgtataggt tatatgcatc gtggtatgga aaaaatggct gaaaatatga
     1981 tttatcaaga gtttattcct actactgata gaatggatta tatcgctgct tcagcgaata
     2041 attatgctta ttgtgcagcg gttgaaaagc tttgtggttt agagattcca cgccgtgccg
     2101 cagtgatacg catgatactt ttagaattaa accgtatcac atcacatttg ctttggcttg
     2161 ccactcatgc gcttgatatt ggtgcgatga gtgtgttttt atactgcttt agagaacgtg
     2221 agtatgtttt ggatttgata gaaaagtatt gtggtgcaag gcttacgcat tcttctatga
     2281 gaataggtgg ggttatgctt gatttacctg agaattattt agaagaaatg cttgcatttt
     2341 gcgataaatt tccaaatgat ttaaaagatt atgaagatct tttagatgat aatagaattt
     2401 ggcgtttaag aactgaaaat gtaggtgtag ttactaaaga acaagcttta aactggggtt
     2461 gtacgggtgt gatgctaaga ggaagtggca taaaatacga tatacgcaaa gaagagcctt
     2521 atttgcttta taatgaagtc gaatttggcg tgccttatgc tacgcaaggg gattcttatg
     2581 caagatataa agtttatatg caagaatttc gtgaaagttt gaaaatcctt agacaatgtg
     2641 ccatgcttta taaagatact ccacctgaaa ttttagctac gcatcctgag tatgtaagtg
     2701 cttcaaagga acaaatttta acgcagaatt attctttaat gcagcatttt gttttaatca
     2761 ctcaaggttt aaaaccccct aaaggcgaag tttatgtgcc tactgaaagt ccaaaaggtg
     2821 agcttggctt ttttatccat agtgatggta caggaagacc ttatcgttta aaggctagaa
     2881 cgcctagtta ttggcattgt gcgttttttg aagaaatgct tgtaggtact tatttagctg
     2941 atgttgtagc cattatgggt aatgtaaata tagttttagg tgagatagat cgatgagaag
     3001 ggtagattta agaaaaagca aagagctttt tgaagattta gcacaaatca taaaagaagc
     3061 aaaacaaggt gaggttttag tggtgctttt tgaaatcggc gatttttctc ctgttgaaaa
     3121 aagtttttct tttgtaaaag aacaaggctg tgagctttta aattctttga aatttaatca
     3181 agtcgattgg actattgtta taaaaaagga gagggtatga tttatgataa tgctctttgt
     3241 tttttagata tgccaagcct taaaaacaaa aatttatgtg aaaaaatagg tgtaaatagc
     3301 attaatattt cttgtttgga agataaaaac ttaaaagcta aattttacaa atgcgaaatt
     3361 gcaagtttga gttttgtttt ggccttgctt tgtaaattaa gcgatgaagg acaattttgc
     3421 gatttagatg agggatattt aagtgctgaa tcttgttttg gagaggaaga agcaggcgaa
     3481 gtgcttgctt ttttaaaaga ggttaagtat ttaattatag ataaaaatat ccattcttat
     3541 aaagatagtg aaaatatcaa atattttttg aatttcttaa gtgtaaaata tggattaaag
     3601 attttagata gcgatgaaga agaatgcgat tttaaaaagg caaaattaaa caccctaaaa
     3661 gaactcgata attatgacgg gttagtgctt tttagagcaa atttgcaaga taaaaattta
     3721 cattgttcaa agcaattttt acaaattgca aaatgcaaag atcaaagtga agttgaaatt
     3781 ttagctaaag attttagttt taaaactaag ctttgtttag atgaaaattt acaaggcacc
     3841 atagcttttt taaattatga aaataatggt tttgatttta ctccaattcg cataaaggaa
     3901 gcaaaatgac agttaagatt aatggtatag attgcgcctt tgaagaaggc gaatatatct
     3961 taaatatagc aagaagaaat gatattttta tcccagcgat ttgctatctt tcgggctgta
     4021 gtcctacttt ggcttgtcgt atgtgtatgg ttgaagctga tggtaaaaag gtatattctt
     4081 gcaatactaa agcaaaagag ggtatggttg tagaaagtga tttacaaaat ctttgggatg
     4141 aaagaaatga gatcatgcaa gcttattgta tcaatcatcc tttagaatgt ggagtttgcg
     4201 ataaatcagg cgagtgtgaa ttgcaaaatt ttactcataa aagtcgtgta aatgttcaaa
     4261 aacattggat taaagacacg cataaaccac ataaacattg gggaatgatt aattacgatc
     4321 ccgcactttg catagtgtgt gagcgttgta ttacagtttg taaggataaa atcggcgaaa
     4381 gtgctttaaa gactgttcct cgtggcggag atagtgtgga taatagcttt aaagagagca
     4441 tgggaaaaga tgcttatgcg atttggacta aatttcaaaa aagtttgata ggccctgcaa
     4501 atggtgatac gcttgattgt tcattttgtg gagaatgtac aagcgtgtgt ccaacaggag
     4561 ctttgatagg ttcgaaattt caatacactt caaatatttg ggaacttaaa agaatccctg
     4621 cttcaaatcc gcattcaagc gattgtgagt tgatgtatta tgatattaag caaagcggca
     4681 ttagcaatca aaaagaaaaa atttatcgtg tgagtaatga ttttgccttt gcgagtttaa
     4741 ataaggctgc aaggtttgct tttgatacgc aaaatgaggc ggataaagat gaaaaagcct
     4801 ttaaagaact tgtggagctt tttgagaaaa atgaaattaa aaacattaaa tttaatagtt
     4861 ttattaccaa tgaagaagct ttgattttac aaaatttaaa aaagaaattt aatctttctt
     4921 tgatcaatga agaagctttg aaatttaaag aatttttaca agaatttatc gctaattctg
     4981 gtgagtttta tagcgctaat actcaagata taacaaaaag tgattttttg gttgtagctg
     5041 gaatgctttt aagatatgat gctccaacgc ttagctataa aatcaataat gctttagtga
     5101 tgaataaagg ctcagggctt tattttcatc ctatggaaga tatgggtata gcaaaatatt
     5161 ctaaaaattt tatcccgcac attcataaaa atggcgatga agagcaaatt ttatattttt
     5221 tacttcaaaa atttagccaa gatgaaggta ttaaaactca tttagcagag ttttttgtta
     5281 gtgaaaataa agaaatagaa gaaagtatca acgaagaagt tgtagaacaa gtcatagaaa
     5341 aagatgaaga aggcaatgaa attcaaaaag aagtaaaaaa agtcgtacct aaaaaagtaa
     5401 aaaaaatcat agaagtacaa cgctctgttt ttgctaaaaa tttaggcata gatgaagata
     5461 aattagaaga tttattgctt aaaaaagcaa attttactct tgttgtaggg agtgattttt
     5521 attttcataa aaatgcgaaa aaacttgcta aattacttgc tttgatccaa aatactactc
     5581 cttttaaagt ctttttaaat cctacgcata ctaatacctt aggtgtggct atgatttgtg
     5641 atttggataa caatacacaa gaaggcaaga ctttaggcta caatgaaaaa ggtgatttta
     5701 gtttttctta tgaagagcat gcaaatttag ctagtgcgag tttaaatcag caagaaggaa
     5761 cttttttaaa ttatgataaa agagtggtac caactaatgc tgctttagaa tttaagggat
     5821 attttttaaa tgatttggct aatgctttag gttttgatga ggaatatact ataaattata
     5881 ctaagagact ccctataaat aaaggttttt ctccgattga ttttgatcat ttagacaatt
     5941 tttataccaa tgcaggcgat tgtaaaaggg gatatgagct taatttagaa tgtttcaaac
     6001 aagttgctaa aaaagaattc atctctccaa attttgaaaa tttaagccta aaagaagatg
     6061 aaattttgct ttatagtgct aatcctagct atcaatttgg tagattttca aatcgtgcta
     6121 gtgcgattaa tgaggtgatt tttttaggtg taagtgaaaa tttagctaaa gagaaaaatt
     6181 taaaagataa agatcttgta aaacttaaaa taaaagataa agaattaagc cttagtgtgc
     6241 gtgtggataa ggatataaaa aatggagctt tcttgccgta ttttgatgaa aaacttgaca
     6301 cgctaagctt ttttgatgaa agatttgttg tggcgaattt agaaaaatta ggagcaaacc
     6361 atgagtgatt ttgctttttt tgctttagag actttgatta aatgtattat tatcattgca
     6421 atatttgcga gtttagcagg tcttgcaact tatgctgaaa gaaaggtttt agcttatttt
     6481 caaagacgca tagggcctga tatggtaggg ccttttgggc ttattcaact tgtagctgat
     6541 atgataaaac tttttactaa agaagatata atcccttcaa attcgcaaaa atttattttt
     6601 gctatagcac ctttgatttc tgctatttgt gcttttgttt ctttagcagc tattcctatg
     6661 ctacctgaat ttactttatt tggaagggtg attcagccta tagtggcaga tatcaatgta
     6721 gctttgcttt ttgtcatcgg cacttcagga ctttgctttt atgcggtgtt tttgggtgga
     6781 cttgcaagta ataataaatg gtcgatttta ggggctgcaa gagggcttgt atcgattatt
     6841 tcctatgaaa gcgtaggagc tttagctttg attgctatta taatgcttgt aggttctttt
     6901 tctttggtgg atattaacaa ttatcaaagc gatggatttt tttcttggct tatttttaaa
     6961 caacctttgg cttttgtgct ttttataatt gctttattta tagagactaa tagaactccg
     7021 ctttgtttga cggaaaatga tgctgaaatt gtagcgggtt atggaacgga gtattcgggt
     7081 ttaagatggg gtatgttttt cataggtgaa tatacttcta tgatagctgg agctattttg
     7141 gtcactcttt tgtttttagg gggttttaat agcttttgga ttattcctgg ttggattatg
     7201 atgatagtaa aatcaagttt tattttcttt tggtattttt gggcaagagc tgcttttccg
     7261 caattgcgtc cagatcaagt gatgaaaatg tgctatttga tcttaatccc tttagctgtt
     7321 ttaaaccttt taatcactgc tttgacagtt cttttatagg agtttgatat gaaaaattat
     7381 tatttagtag atgagaaaag aaaaactcct gttagcactt gggagaaaat ttcacaagct
     7441 ttgcgtagaa gcgttaaact agagcttttt gtagggcttt ttgtgatgat gagagaatta
     7501 cttaagagaa ataatagcgc tacgattaaa tatccttttg aaaaggtaaa gcttgacaat
     7561 cgttaccgtg ctgttcatcg tttgatgcgt tttatagaaa gcgaaaatga aagatgtata
     7621 ggttgtgggc tttgcgaaaa aatttgcatt agtaattgta tcagaatgga aacttcttta
     7681 gatgaaaatg ggcgtaaaaa agtagaaaat tatagtatta atttagggcg ttgtatttat
     7741 tgtggttttt gcgctgaggt ttgccctgaa cttgctatag tgcatggcac agagtatgaa
     7801 aatgcagccg agcaaaggtc ttattttggc tataagcaag attttttaac tcctattgat
     7861 aagcttaaaa atcaagttga atttgaagga gcaggaagtc ttagaaagga tgcaaatttg
     7921 tgggttaaaa aaacgccaaa ttattatgat gtgatgattg aaagagcctt agaaaatcaa
     7981 aatacacaag agcaaggaga aaataaatga tagaaaattt ggcttttgta ttttttagtg
     8041 tagtggtttt aggctttttt ggcattgcgg ttttaagtaa aaatatgctt tattctcttt
     8101 ctgctttagc gggtggaatg gtatttttat cgggatttta ttttttactt gatgcagagt
     8161 ttttaggcgt gatacaaatt attgtttata gtggagctgt acttggactt tatagttttg
     8221 cgatgatgtt ttttgatgct tctaaagaat ttaaagaaca acttaaagct aaaaaaagtt
     8281 tttttacttt ggtggtttta agtacgattt tacttttggc catgcttata ggttttaaat
     8341 accaaaatat cagcacggat ttgcctttaa atgatcctgc tttgtttgat tttaataaac
     8401 aactggcttt agcgattttt tcaaaatatc ttttagcttt tgagtttata gctattttgc
     8461 ttttgattgc tttagtctgt gctatagtgc ttactcataa agagctaaca aaggaaaaac
     8521 aatgatagaa aagtattttt tcgtcgctat tttaatgttt gtcataggac ttgtagggat
     8581 tttaaaaaga caaaatctca tcatgctttt tatctcaagt gaaattttat taaatagtgc
     8641 taatttagcc ttagtagcag cttctaaaat gcacaatgat ttaaatggac aggtttttgc
     8701 gctttttatc atgggtgtag cagcttgtga agtagctgtt ggtgtagctt tgtgtgtgct
     8761 ttggtataga agaaaaggca ctttggaatt aaaaagctta aaagaagtgg aggcttagta
     8821 tgcaaaattt agctttgatt tctcttttta gtccttttgt agcttttttg tttgcaagtt
     8881 gttttgcttt gagtgagaaa aaacaatttg tagggataat ttgttcactt ttagtagctt
     8941 tgagtgcttt ttgttctttg tatttgcttt tttgcaatga agcttttaat gtgagtttgt
     9001 ttgaatggtt tgctggagta aattttggct ttgatataga tgctatttcg cttactatga
     9061 tgagtgttgt aggtattgta gctacttgtg tgcattttta tagtattttt tatatggctc
     9121 atgatgaagg ttttaataaa ttttttgctt atttggggct ttttgtcttt tctatgcttt
     9181 ttttagttat gagtgataat ttcttaggac ttttcgtagg ttgggaaggc gttgggcttt
     9241 gctcttggtt gctcataggt ttttggtata aaaatgatac ttattctttt gcggctaatg
     9301 aagcttttat tatgaatcgt attgcggatt tgggtatgct tttaggaatt ttttggcttt
     9361 atttgcaagc aggaacttta aaatatgatg aagttttttc catggcacaa agcctagatc
     9421 acaatgcttt gatcttaatc gcaacttgtt tatttatagg ggctatggga aaatctgcac
     9481 aatttccttt tcacacttgg cttgctgatg ctatggcagg gccaactcct gtttctgcat
     9541 taatccatgc agcaaccatg gtaacagcgg gggtttattt ggtaattcgt gcgagtacgc
     9601 tttatgattt agttcctgaa gtttcttata ttattgcctt acttggagct tttgtagcga
     9661 tttttgcagc ctctatggct ttggtggtta gggatttaaa acgcattatt gcttactcta
     9721 ccttatcgca acttggatat atgtttgtgg ctgcaggact tggggcttat ggtatagctt
     9781 tatttcactt agctacgcat gcttttttta aatctttact tttcttaggc gctggaaatg
     9841 taatgcatgc tatgaatgat aaattagaca ttaaaaaaat gggtggactt tttaaacctt
     9901 taaaaattac agctatttta atgtgtatag gatctttagc tttagcagga atttatcctt
     9961 ttgcaggatt tttctctaaa gatttgattt tgggatattc tttcatttct tttcaccatg
    10021 gtattttttt agtgctctta atcgcagctt ttttaacagc attttatagc tttagacttt
    10081 taatgttggt attttttacc cctgcaagac atgatgaaca tccacatgaa gcaagtaaaa
    10141 tcgcactttt ggctatgagt cctttgatgg ttttagctat tattgcagga tttttcgaac
    10201 atagtttttt tgaatattta agcacaaaat tagtttttat tgatgcgcaa aatcaaattg
    10261 taatgatttg tgcgagtgta gcagctattt tgggtgcaat tttggctatt tttgcttata
    10321 aaaattcttg gtttaaggaa agtattgaag aaaataaaat tcataaactt ttaagtaatg
    10381 attattttat tcctcaattc tatcatcaat ttatcgtttc aaaatatgaa agcttatgtg
    10441 cgattttaaa gcattgtgat ctttatattt ttgatagaat agttgaaaaa attgctttgt
    10501 attctcaaaa tatttcacaa aaaatgatta tgccaaacag cttaaactta atgcttaggt
    10561 ttttggtggc agcttttgtg attttgttga ttttagtatg gatggtgtaa aatgctaaat
    10621 tatttgatat tttttccttt aatttctgct tttgtggttt tgctattaaa tcgcggaggc
    10681 gttaaggttt ttagcgttgt tgtaagtttt atgattttgg ctttaaattt ggatattttt
    10741 gcggattttt tacaaggggt aagctttgat tataatctct cttttaaaat tttgaaattt
    10801 tttagctttc atgtaggagt agacagtatt gcacttgtat tgatactttt aagttctttg
    10861 atgatatttt taagcttttt atttttgaaa ctagaacaaa aagcgcttat atcttgtata
    10921 ttctttttag aatttgctat tatgggactt tttagcgcaa aagatggttt gttgttttat
    10981 gttttttggg aattttctct tttgcctttg ctttatatta tgggagttta tggtaaagat
    11041 tttagagcag gggtgaaatt ttttatctat gcttttgcgg gttcaatttt aatgcttgta
    11101 gcattgattt atcaagctta tttaaattat cagcttttaa atatcttcac ttttgacttg
    11161 gaaatttgga aaaataatgc ctcagcagta aattttacag agcaactttt actttttgga
    11221 gcatttttta tcgcttttgc tatcaaagct cctttatttc cacttcatac ttgggcacct
    11281 aaggtttatg caaattcgcc tatacttgtt tctgtaatgc ttgtagtttt taaaatggct
    11341 ccttttggat ttttactttt ttgtttacca ctttttccag atgcgagtgt gtattttatg
    11401 cctttaattg tagctttatg tatagtaagt atcgtttata acgctttaat tgcttataga
    11461 gcagaaaata ttaaagaatt gattgcttat agttctattt cacatcttgg tgtgatgatt
    11521 ttgggaattt tttctttaaa tgctttgggt attagtggtg cggtttttta tatgtttgca
    11581 catggtattg taacgggagc tttattttta atggttgaac ttttatacca aagatatcat
    11641 acttatgata tttcttttta ccattcttta gccaaaaaag cacctttatt ttcaattttc
    11701 tttatgctca ttttacttgc gagtgtttct ttgcctttaa ctgtttcttt tgtgggagag
    11761 tttttaattc ttttaggtat agcaaagatt aatttatttt acgctttgtt ggcaggtttg
    11821 gtgattattt taggagcgat ttatatgttc gcagtattta gaaaaatatt tttcatgcaa
    11881 aaacaaagct ttatagaggg tttttcttta ctttttagag aaatagtagc gcttgtgtgc
    11941 attgtagtaa tgatttttgg actagggctt atgccaaata tacttttaaa gccgatacaa
    12001 aaagatgtgg ataatcttat aaaaacaatg aatattagag ctgttgagca aaatacttta
    12061 gattttttat ctaaaatagg agaggcaaat gttaaataat tttttaaatt tagaactttt
    12121 aaatataagc ttatcttatc catttttatt tttaattaca actgcaatag ttcttttgct
    12181 ttgctctggt ttttggaaat ttcatcgatc gttttatatc ggcataagtt ctttgtcttt
    12241 gattgtaagt gcttttttga ttttaaataa tgcaaatgct caaggtttag aagcaaaagc
    12301 ttttttggct actttaaata atgatattgt ttcattttat gcttctttgg tgattttgtg
    12361 tttttcattt ttatatcttt taatgcaaaa agaagaaaat cagggtgaat tttatgcttt
    12421 atttttattt atgattgcat ctttgctttt gatggtttca agctcaaatt tagtacttat
    12481 ttttatagga cttgaaagtt cttctttagc actttatact ttaatagcaa tgcgtggaag
    12541 tgataatgct atttcaagtg cgataaaata ctttagtgta gcggctgtag gagctgggtt
    12601 ttttgttatg gctgtagctt ttatttattt aaaaacagga actttagatt tatctgctaa
    12661 tttagcgtta aaaaatgagt ttcaaaaaga tcccatgctt ttgggtgctg gagtgatgat
    12721 ttttgttctt tgtgcaatca agctttcttt ggcacctttt catttttggc ttaaagatgt
    12781 gtattatgca gcacatacaa atttggttgc ttttatttca gttgtgccaa aagttgccat
    12841 gttggttgtg gttattcgtt tgtttgattt tttaaataat acaggttttg aatatatcat
    12901 aatagttcta gcgatttttt ctatgcttat aggtgctttt gcggctctaa gtcaaaacaa
    12961 tatcaaaaaa atgtttgctt atagttctgt agtgcattct tctttggttt tggtagcttg
    13021 cattccttta ttaaaagaac aaaattttga tggaattttg cttgctattt ttggatattg
    13081 gactttattt gcttttgcaa attatgctgt atttatgatt ttaagcaatt atgagaataa
    13141 ttcttatgag agtttaaatg ggcttttggt taaaaaacct ttaattgctt tttgtttaag
    13201 cattagtgtg ctttctttag caggtatccc gccttttgga gtgttttggg gtaaatttat
    13261 gattttaaat acagcaattt taaatggata ttggtatttg gcgctttttg tggctttatc
    13321 ttctgttatt atgctttatg cgtatttaaa gattttaatt catgctttat ttatgaaaaa
    13381 tgatagggtt cataatatta agtttagttt tatacaaaat tttattttag ctttttgtgt
    13441 ttgtgtaagc acttttgtta tattgttaat gttataagag ttttgctata attattttat
    13501 gagaatatta tttttaattt tattaagttt tttaaatgct tttgcttttg agcttgtttt
    13561 aaacacgggt cgcgaaaata atcaagcttt tgcagtttta catgcgagta atgatttaga
    13621 atttacatgt caaaaattta ttaccgaagc aaaagttcat tttgaatgtg atattgtagg
    13681 tatggttgat aataaattaa aagatcagag tttttctgct tttgatttaa aatttataca
    13741 agaagctcaa aaaattaaaa tgatcatttt gccaaaaata caagcaagaa tgtttgacac
    13801 ttctcaaaat atttatatag ataaagaact cagttcatca agttcgcata aaagtaaggc
    13861 ttttactttt atttttacac cagaactagc acctattaaa gactatgatg gactcgattt
    13921 taatatcaat tttccacatg agagtttgcc ttatgttgga gctttggatt taaattctga
    13981 tcctgttgtt attcctcaaa gtgcagatat caatacttat ttacgcatca aaaaagaata
    14041 cgataaggct aattacaatc aagtggtgat tgatgcacaa aatgctatca atagatatcg
    14101 tggcagtatt tttactagtg aatttatact ttataaatta agagctcaaa ataaacttta
    14161 cactcaagat ccaagtatgc gtgatcaaca aattttagaa aagatgattg atgatgctaa
    14221 aaattggacg cgtactttta caagtgataa aaatttttca gaagttttac atataatgtt
    14281 aagaacttat atcgctttag ctcagcgtgc tgatgtagag tatacaatgt cgattttaga
    14341 taatgaacaa cctaataatt attttactca gttatcaaaa cttgattatg cagactatat
    14401 ttataattta aatgaaaaag aaaaagctgt aaatatttat gaaaatactt attttaatac
    14461 aaaaaattta gatttagctg caagagcagc tatgagtttg gcaaagaatt tgctttcaaa
    14521 tgagcaagta aataaagcta tagaatatat taataccatt ttaaaagcca atcctgaata
    14581 ttttggaaaa gatattccaa gatctttaga acttgctaaa ttatttaatc aaaaaggaca
    14641 atttgatata agtgcaagta tttatgaaga tgcctttgct aaaatgtcca aacttgatcc
    14701 aagttatgaa gaaactttaa aagatttagc cttggtttta tcacatgcta acagatctag
    14761 tgatgctaaa aaataccttg atttgtatat ggatgattat ttagatggta agtatttaga
    14821 tgaaattaaa aaagcaagtg atgaggtatt ctttgcttta ggtgataata atgcaagctt
    14881 tttgcatcag cgttatacag atttaatgaa gcaatatgca aataaagatg agaatattgc
    14941 aaataaagct ttagatgaag atgttgcact ttattataaa gagggaaatt ttagtgccat
    15001 tttagcttat aaagatctta tagaaagtaa aaaaattcca aatgctactc aatttttaga
    15061 gaaagcagcc attaatgatt taaaaaatgc cataaaagct gataattgta tcaatgctgc
    15121 aaatattttt atgcgtttta gtgcttatga tataggtcag aaaattgaga ataaaaaaca
    15181 aatgttagct tgtcttatca gaacttctaa tgttgaacaa gcacttgatt atatagataa
    15241 aaattataat gaagattcta tattttatgg tcttcaaaaa gcatctattc tttttgacaa
    15301 taaacaatat cctcaggtga ttaaaatttc taaagacata gctaattcta gaattttaaa
    15361 aagtgatgat gagaatttta aggcttatta tttgcaattt ttatctttat tgcgtttaaa
    15421 tgactataat caagccatta aaattttgca aattttagaa agttttccaa tgaattttag
    15481 tatggtggaa gcttatgatg ctttactttc ttacgctaat gatcataata tgcaaacaac
    15541 tattttaact tacgcaccta aggccattga ctatcaaaat tttaaaggta taaatctttt
    15601 tagtcctaat ttagaattta tatatcttga tgctttgact aaaatcaata aaaatgaaga
    15661 aagtttagct gttttaacag atttacttaa attaaaactt tcagatgaag atagagcaag
    15721 agctttatat atccaagcct taacttatga aagaatgcaa aatatacaag ctgaaaaaga
    15781 aagtttaaaa caatgtcttg aaatcaaaag tgcttcaaat tggcagaatt tatgtaagag
    15841 taaaaatcaa attttaaatc aataagtaaa tttagagata actagctttt tggctagtta
    15901 tctaaggtta aaacctcttc ttcttaatat cttctaagat attattagct atatcactta
    15961 ctgtactaga aataatagct gattcattag caatttcaac attatcttta gtagtttgat
    16021 caatttgagc tacgctatca ttgatttgag tgatacctgc agtttgttct ttaatacttt
    16081 ctgccatatc attgatagat tgaacaagta aattagtatt agcttcaatt tcagataaag
    16141 acttttgagt tctttcagct aactttctaa cttcatcagc taccac
//
LOCUS       DAPIWU010000035        16147 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.035, whole genome shotgun sequence.
ACCESSION   DAPIWU010000035 DAPIWU010000000
VERSION     DAPIWU010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16147
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.035"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            7..366
                     /locus_tag="RJ285_000843"
     CDS             7..366
                     /locus_tag="RJ285_000843"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HDV7383639.1"
                     /translation="MKELNEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLY
                     KSEDKFKSGCGWPSFDDEIKGAIKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKN
                     VRHCVNSISLEFVKTKD"
     gene            381..1007
                     /locus_tag="RJ285_000844"
     CDS             381..1007
                     /locus_tag="RJ285_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDV7383640.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIAAMGFKMIIIGLKDIFNL"
     gene            1089..2378
                     /gene="cetZ"
                     /locus_tag="RJ285_000845"
     CDS             1089..2378
                     /gene="cetZ"
                     /locus_tag="RJ285_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HDV7383641.1"
                     /translation="MFGAKKNNTEIIEQLEKKCNGLEDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYNDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLCLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(2401..3048)
                     /locus_tag="RJ285_000846"
     CDS             complement(2401..3048)
                     /locus_tag="RJ285_000846"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HDV7383642.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKIAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(3023..5152)
                     /locus_tag="RJ285_000847"
     CDS             complement(3023..5152)
                     /locus_tag="RJ285_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7383643.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIHDSRSYSSYLLKKHNINLNKIQELQNHENIQNLSNHTSDLTLLAQNGTIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAKKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLVKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKSLAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            complement(5149..5439)
                     /locus_tag="RJ285_000848"
     CDS             complement(5149..5439)
                     /locus_tag="RJ285_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HDV7383644.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVIDSAKLANFPLQAKVEEE"
     gene            complement(5439..6041)
                     /locus_tag="RJ285_000849"
     CDS             complement(5439..6041)
                     /locus_tag="RJ285_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7383645.1"
                     /translation="MKKILALILISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNGSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            complement(6052..6504)
                     /gene="smpB"
                     /locus_tag="RJ285_000850"
     CDS             complement(6052..6504)
                     /gene="smpB"
                     /locus_tag="RJ285_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDV7383646.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGRNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            complement(6501..7268)
                     /locus_tag="RJ285_000851"
     CDS             complement(6501..7268)
                     /locus_tag="RJ285_000851"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDV7383647.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDLFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSKRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSMQLGSDIAFFLSGFHSANVSGCGEIIKEF
                     EDDIPNLKWTFPQIFCQTKAVYDEFDREIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDQ"
     gene            complement(7265..7492)
                     /gene="csrA"
                     /locus_tag="RJ285_000852"
     CDS             complement(7265..7492)
                     /gene="csrA"
                     /locus_tag="RJ285_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDV7383648.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            complement(7486..8304)
                     /gene="truB"
                     /locus_tag="RJ285_000853"
     CDS             complement(7486..8304)
                     /gene="truB"
                     /locus_tag="RJ285_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDV7383649.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLTNLKQII
                     NQMQGIISYTPPQFSAKRINGTRAYELAKKGIEVNLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYIDLKPNF
                     IKDLNKLENGAKIFVKELDFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            complement(8301..10376)
                     /locus_tag="RJ285_000854"
     CDS             complement(8301..10376)
                     /locus_tag="RJ285_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDV7383650.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEDKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLNGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            complement(10373..10810)
                     /locus_tag="RJ285_000855"
     CDS             complement(10373..10810)
                     /locus_tag="RJ285_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383651.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQIENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            complement(10804..12525)
                     /locus_tag="RJ285_000856"
     CDS             complement(10804..12525)
                     /locus_tag="RJ285_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HDV7383652.1"
                     /translation="MLEWDLSALFHDKESLQNFTQDQIQQSLNFKKNYENKLYTLNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSREFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYNIAKNAFNQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTDKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQRMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            complement(12529..13416)
                     /locus_tag="RJ285_000857"
     CDS             complement(12529..13416)
                     /locus_tag="RJ285_000857"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HDV7383653.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVLRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            complement(13426..14649)
                     /gene="sstT"
                     /locus_tag="RJ285_000858"
     CDS             complement(13426..14649)
                     /gene="sstT"
                     /locus_tag="RJ285_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDV7383654.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYSISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            14789..15985
                     /locus_tag="RJ285_000859"
     CDS             14789..15985
                     /locus_tag="RJ285_000859"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDV7383655.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
BASE COUNT         5288 a         2368 c         2457 g         6034 t
ORIGIN      
        1 cagatcatga aagaattaaa tgaagaagaa aaaaaagtaa ttttaaataa aggaacagaa
       61 gctcctttta gtgggaaata taatgatttt tatgaaaaag gaatctatca atgcaagcaa
      121 tgtggagctt cgctttataa atccgaagat aaatttaaat caggttgcgg atggcctagc
      181 tttgatgatg aaataaaagg ggctattaaa agaattcctg ataaagatgg gattagaacc
      241 gagattgtat gtgcaaactg caatggacat ttaggtcatg tttttgaagg agaaggattt
      301 tctgctaaaa atgtaagaca ttgtgtaaat tctatttctt tggaatttgt aaaaactaag
      361 gattgatagt gttttttagt atgggttctg agctttattt gatgtttttt gctgcaatta
      421 ctttgcttgc catattaaat ccttttggta atttaactca atttttggct atgagtgatg
      481 gattgccttt aatgcttcga aaaaaacttt ttagaactat tctctataca gcttttacta
      541 tagttttggt atttttatta tcaggacctt tgtttatgaa ctatattttt agggtgtcat
      601 tagatgattt aagggtttct ggtggtttgg ttcttattat aatggctatt aaaaatttac
      661 ttttttcaac aaaaattgca actaaggatt ttagttctta tcaagatatg gatgataagg
      721 aaattttaag acagagttta atacctatgg catttcctat gcttgttggg cctggaactt
      781 tagctagcgt tattgttata gccgaagatg gtgggcttga tgttgctctt ggtggggtga
      841 tgatagcttt tatttttatg tttatacttt ttcattttgc agctactata gaaaaaatag
      901 ttggaaaact gattttacat gttttttctc gtatagcaca agtatttatt gctgctatgg
      961 ggtttaagat gattattata ggtttaaagg atatatttaa cttataaatt aatataattt
     1021 taagtaaata atactatata aactatgata taattttaaa ataatttatt attaaaaagg
     1081 tgagttttat gtttggtgct aagaaaaata atactgaaat aattgaacaa cttgaaaaaa
     1141 agtgtaatgg tttagaagat attttaagat ctattgggaa tactatggcg gtaattgaat
     1201 ttaccaccga tggcgttatt ttagaggcaa atcaaaattt tttaacaact atgaaatact
     1261 ccctttcaga gatcaagggt aagcatcata gtatgttttg tttgcctgaa gttgttaatt
     1321 cttcagcata taatgatttt tggaaagatt taagagatgg aaaagctaga agtggtcttt
     1381 ttagacgtat agctaaggga gggatagatg tttatttaga agcaaattat cttccaatta
     1441 gtgataataa tggttatgtt tataaaatta ttaaatttgc caatgatata actcaaagac
     1501 attatgaaat gcttgatctt agaaatacta ttgctgctgc taatcgttct atggctatta
     1561 ttgaatttaa acctgatggg actattatta cggctaatga aaatttttta agaactatgg
     1621 attttaatat tgatgagatt aaaggaaagc atcatagcat gttctgtgat tctaattata
     1681 gacactctaa ggactatgtt caattttggg aagatttaag agagggcaaa tttcaatcag
     1741 gtaaatatat aagatacgga agaaataata aaaaagtata ccttgaagca agttataatc
     1801 cggttaaaaa tgatgatgga aaaatttaca aggttattaa atttgctaca gatataagcg
     1861 aacaagttaa aaaagatcaa gaaaaacttt gcctcataag cgaacttgca gaaaaaaatg
     1921 ataatcttac tcaagatgga gatcgtgtaa ttgaaaacac tgtttcaaat gttcagaata
     1981 ttgctgatat gatgtctcaa agttcaaatc ttgtttcctc attaaatcaa caatcagatg
     2041 aaattaaatc tattattcag actattagtg atatcgctga tcaaactaat ctgcttgctt
     2101 taaatgctgc tattgaggca gcacgtgctg gtgaacatgg tagaggcttt gctgttgttg
     2161 ctgatgaagt aagaaattta gctgaaagaa cagggcattc ggttaatgaa attaccacta
     2221 cgattaattc tattcgtaat gttacatcac aagtggttga gagtattaaa agcggtttag
     2281 aggatgttaa tcagagtgtt gaacttgcaa aagaagcaag agagtgtatg gagaaaattc
     2341 gtgaaagctc tgctgaagtt gctaaagcga tgtcataagc gtgattttca cgcttatttt
     2401 ttaagtaatt aaatctttaa aatttttaaa accactttct tggttgcatt tttcttttaa
     2461 aatatttaaa aattctttcc tagaaatatt atgagcgccc ataaattcta aatgttggtt
     2521 ataaacttga caatctatga taaaatcata aggttttaat aaatcacaaa gtttaatcat
     2581 agcaatttta gatgcatttt ttttaatgct taccatgctt tcaccaaaga aaaccttgcc
     2641 taaaattaaa ccataaattc cacctataag ttcattattt tcataaagtt caaggctatg
     2701 tgcatagcct tgggtaaata acttataata agtggtaata aattcatcat ctatccagct
     2761 ttgagagcgt gtatcgcgac ataatgtaat taattttaaa aaatcataat caagtttaat
     2821 ttgatagaga ttaataaatt ttttcatatt tttttggatg tgaatttgat ttggaattaa
     2881 aatgcatcta ggatctggac accaccaagt tacaggttta cttgtccatg ggaatagacc
     2941 aaaagtataa gcttttacaa taaaatcagc ttctaaattt tgacttaaaa atacaggagc
     3001 atttttaggt gcattgagta atttagaata taaattcgag ctttccattt ttaccaagtt
     3061 tgattttagc tataccgcct tttttaagct ttccgaataa aatttcatca ctgatttttt
     3121 ctcctatctc ctcagaaatt atgcgtttta aaagccttac tccaaattct ttattatagg
     3181 cttttttagc taaataaatt ttagctttat catccactga taactttata ttatttaaat
     3241 ttttagaaat ttcatcaagt tctttttcga taattttaac aagtatagca tcgtttaaat
     3301 cattaaaatg taaaatttta tcaatacgat taataaattc tggagcaaaa aagtctttga
     3361 tagcacgatt acttttttct tcatttttac ttaaaaaacc aagctcattg ctttctttaa
     3421 gtcctagatt agatgtcata ataatgattg tatttttaaa atctacttta agaccgctat
     3481 tgtcggtgag ttcagcattg tcaaaaatct gtaaaaaggt attgcttaaa tcaggatgag
     3541 ccttttctat ttcgtcaaaa agaacaagac tgaaaggatt tttgcgaata gcattgctta
     3601 aaagtccacc ctcttcaaaa cctatatatc cagctggaga tcctattagt ttacttatag
     3661 catgtttttc tgcatattca ctcatatcaa agcgttctaa atttaaacct aaaaattcag
     3721 ctaaagattt gcaaagttct gtttttccaa ctccacttga tccagtaaac aaaaacactc
     3781 cgcgtggtgt attggaattt ttaaatcctg cgaaactttg cttaagtgat gaaacaaggc
     3841 tatctataac ttcatcttgg ccaaaaattt ttgcttttaa atttgttttt aaattcatta
     3901 aagctttgtt ttgatcgaat tcaaacattt tatgatggtg ggtcattttt actaaaacat
     3961 tttctaaatc ttttaaattg gcattttttt tagcttttgg atttaaagca aaagaagccc
     4021 caagttcatc gatcagatct atagcacaat caggtaaaaa tttatcatta aaaaattttt
     4081 taccccaaat tacagcatat tgaagaattt catcgtttaa ttttatatga tgaaattctt
     4141 catatttgtt ttttaatcct ttcagaattt gcaagctttc ttcttggctt ggttcatcta
     4201 catttatttt agcaaaacgg cgacttaggg gtttattttt atcaaaagta tttttatatt
     4261 ccataaaagt tgttgcacct atgcatttta aagttccatt acttagagct ggttttaaaa
     4321 gattggaaaa atcagtatga gattctcctg tacttccagc tcctactata gtgtgaattt
     4381 catcaataaa taaaatagca ttaggtattt tctcaagttc atttaaaatt tctttaattc
     4441 ttttctcaaa atctccacgg tattttgttc ccgcaagtat actagccata tcaaggctaa
     4501 aaatttttgc attttgtaag tttttaggca cctttttttt cgcaatagcc aatgctaatc
     4561 cttctacaat ggccgttttg ccaactcctg cttctcctac taaaatagga ttatttttct
     4621 tgcgacgtga aagaatttgc atcattcttt caagttcaaa ttttcttcct attaaaggat
     4681 caatcgtgcc attttgagct aaaagtgtta aatcacttgt gtggttgctt aaattttgta
     4741 tattttcatg attttgaagt tcttgaattt tgttaagatt tatgttgtgt ttttttaaga
     4801 gatagctaga ataacttctt gaatcgtgta tgagcttttc taaaaaatct ataattttaa
     4861 tttcattatt tttattttta gatgaaagta agatttcatc taaaacaaca gatattgtag
     4921 gttctatttc ttgtttaata acttgattgt tttgagaaat gtaatttttt aattcagttt
     4981 ctagaagttc aagatctcca tctgaaaatt cttcaaatat atccttaaaa tcagtgctta
     5041 gttttagtaa tgcaaacagt acatgctcac aggtaacaaa ttcatggtgg tttattaagc
     5101 ttagattttt ggcattatca agatattttt gtaaattttc ttggtatttc attcttcttc
     5161 tacctttgct tgtagcggaa aattggcaag tttagccgaa tctataactt ttttttgttt
     5221 tgaaagagct atttcctggg tgtaaatgcc acaaattcca gaaccattgt ggtgaatttc
     5281 taacattgtt tgacttgctt tctcaaggtt ttgatgaaaa atattcatca aaatttctat
     5341 aacaaaatcc atggttgtta catcatcatt taagagtata actttataca tttttggttc
     5401 actaagtttt gtttgctcta gagtttgggt ttttggcatt attttccttt gtagatttta
     5461 tttaaatctt cttgcatgag ttctgttgga attttaccaa gataaaaatt tgttggagta
     5521 ttattattcc agtaatcgct tattttttga taaattccat tttttaaaac aactttaaaa
     5581 ggaagttgct ccatattttg atagtctata tcttttaaaa tttgagcaat aatacgatca
     5641 ttagagctgc cattgcttag aaaatagtaa gcaccataat catccgcgaa ttttttaact
     5701 gtttcatcgc taacatcttc aaaatgtgta agtcctataa tgataaattt gctagaatta
     5761 tttttccaaa gtttgctaag atctaaagct tcttctttac atggggtgca aaaagtgcca
     5821 aaaaaatcaa acattagaac ttttccttcc tctccttcta ccacaaaacc tttatctgtt
     5881 cttattaaag ttttgcttcc accatttaca ctatttaaga ctattttatc tcctttgtga
     5941 tactcttcaa acataaaatc attttgaatt tcttcttcct tggagcaagc attaagaaaa
     6001 aatgctaaac ttattaaaat tagggctaaa atttttttca tttattttcc tttatttgta
     6061 atttttcata gcagctttag cttctaaatc ggcttgcttt ttctttaaag tttcacgctt
     6121 gtcgtgcaaa tttctccctt tagctaaagc aagggtagct tttactttat tttttgtgtt
     6181 aaaataaaga tctaatgcaa cgatagtata tccttctata cttactttac ctaataattt
     6241 atcaatttgc tttctatgca ttaaaagctt tctagcacct ctttcttcgt gtttatagaa
     6301 agaatgtgta gtatgaagca atgaaatatg agaattaagt aaaaaaatct cattttttat
     6361 aatgcgaaca aaagagtctt taagatttgc tcttcctgct cttaaggcta caacttcact
     6421 tcctttaagg acaattccgg cttcaaagcg ttctatgatg ctataatcaa ataaagcttt
     6481 tttatttctc gcaataattt tcattgatca accttaaaaa cactactacc gctaccgctt
     6541 agaaaaaaat cttcttgcaa gtaagacttc attttaggat ataaagttgc acaaggagta
     6601 aataaatcat ttaattcttt gtttttaaag ttttgtaaca actcttttgt gctgagtttt
     6661 ttgtagattt gcgcttgatt attgtttttt tgaaagtcaa atatttctct atcaaattca
     6721 tcataaacag ctttagtttg gcaaaatatt tgtggaaaag tccattttaa attaggtatg
     6781 tcatcttcaa attcttttat aatttcacca cagccactta cattagcaga gtgaaagcca
     6841 cttaaaaaaa aagcaatatc acttcctagt tgcatgctta aatttataag ttcttgtagg
     6901 tttaatttta aatttagggt ttcatttatt agcagtaaaa aactcgcaca atcgctactt
     6961 ccaccgccaa gtccagcaca tactgggata ttttttgtga gttttaggct ttttttgcta
     7021 aataattctt ttaattcgtt attatatctt ttagaaagta gcaaataagc cttttgaata
     7081 atattatttt cgcatttaaa attactaatg atttcaaatt cttttttaga gtctgattct
     7141 ttatcaacaa gctcaagctc atcaaaaaga tcttttaaaa gtataaatcg tgattctaaa
     7201 agatgatatt ttcttgagtc aaaaccggta agttttaaaa aaatatttgc tttagcgtaa
     7261 gctttcattt gattagtttt ttgcttaagt catcaagttt aatatcattc tgaacaacag
     7321 aatgtaaatt ttcatccttt acttgttgaa caagttcttt tctaagtatc ataagggatt
     7381 ttggagcttc tatgcctatt ttggcatatc ctttccctgt ttgaacgact ttgatttcta
     7441 taccttctcc gataattata ctttcatttt cttttcttga taatattaac atttttcaac
     7501 cttatttaga agatatttta ctgtattttc tttaatatta attatgctaa aatatttctc
     7561 tgtttcaata taataatctc cttcatcatg aaaatctaat tctttgacaa aaattttagc
     7621 accattttct agtttattta aatccttgat aaaatttggt tttaggtcaa tgtattttaa
     7681 cacatttaag cttttctcat tattataaac aaatttacct tctttaatgc gctctaaaga
     7741 gcttaaagtc gcattaatac ctagttttct agcaaaaagt tcacaataag atcttatata
     7801 agcaccttca ctgactgtga tttcgatatt taaaaaagga tgattatagc ttaaaatctt
     7861 gcaatcaaat acttccattt gacaaggttt taaatttact tctatacctt tttttgcaag
     7921 ttcataggcg cgagttccat tgattctttt ggcgctaaat tgcggtggtg tataggagat
     7981 aattccttgc atttgattaa tgatttgttt taaatttgta agatcaaatt cttttatatt
     8041 ttgaatttct tttatatttt gatcatcaag acttaaagag taaactccaa gccataaagt
     8101 agctttatag gtttttggag ttttttttaa aaaacggaaa agttttgtgt attgtccaaa
     8161 tgcaacgatt aaaacccctt tggcgaaagg atcaagagtg ccagaatatc ctgctttttt
     8221 atttttatat tttttcttta aagtgcttaa aaaggcatta gagctcaaac cccttggttt
     8281 aaaggctgca aagatcttgt tcatactgct ttttccacaa agcttgccat gattacacgc
     8341 attatgccac caaaattaat attaagcttt tcctcttttc cgcttttatt aacttcaaca
     8401 accctgccaa tgccaaaaat tttatgttta actagatctc ctttgcaaaa actagttttt
     8461 tgtatatttt gattttttga tttttcattg attaatttac tttcttctaa gaagcggcta
     8521 ggattgatgt ttgctcttga accatgataa aaacgagaat ttgcaacact tattgtgaga
     8581 aatttcttgg cgcgagtgat ggcaacataa gcaagacggc gttcttcttc gagattttct
     8641 tcgctattta aaggaaaaaa tccttcatca aagcctatta taaaaacata atcaaattcc
     8701 aaacctttgc tagcatgaat actcatcaag caaacacatt cttcatctaa attatcttga
     8761 tcgcttaata aagaaatttc actaagtaga tcttctaaag aagctttggg atcttctttg
     8821 agtttttctc ttagattagc ataaaactca tcaagatttc tgattctttc atctccatca
     8881 tcttgctctg aaaaataatc tttaatttta aataattctt ctatattgtc aaaaaccttt
     8941 tttgcattat cgtagctttt tagagtgtga atattttgta taaaaatatt tgcttcattt
     9001 tgtgcttttt ttgttgttaa aattcctaca ccaccatcgc tttcgcatag ggcatcaaaa
     9061 agtgaaattt gacgtttttt tgcatattct tctaaatttt ttagggcttt ttctcctatg
     9121 gatcttttgg ggcgattaat aatacgttta aacgacaaat catcgcttgg atttaagata
     9181 agtctaagat acgagattaa atcttttatt tctaatctct cataaaaacg cataccatta
     9241 agtagtttat aagaaatttg tttcttcata aatgcttctt ctattgctct tgatagtgca
     9301 ttaactcgaa ataaaatggc gatctcttta gcttctactc cagaatttag caattttttc
     9361 acttcttgag caatatataa accttcatct ttttcgtttt cgttttttaa tattttaata
     9421 ttttccccag tatctttagt gcagattaaa gtttttccaa gtcgttgctc attgtgagat
     9481 atgagattat ttgctgcttg taaaatagtc cctactgaac gatagttttg ttcaagtttt
     9541 acaagtttaa catttttaaa atcgttttga aaatttaaaa tattttcaat ttttgctcca
     9601 cgccaactat aaatactttg atcatcatca ccaacaactg tgatattttc atgcatacaa
     9661 catagatttt ttagaatttt atattgcaag gtattggtat cttgatactc atcaactgta
     9721 atgtaattat aaagtaagct ttgttctttg gcaaaattta tatcattttc taaaatgaga
     9781 ttgcttagca ataaaagatc atcaaaatct acaaaatttt gttttaataa gtattcttca
     9841 taagcacggt aatagttggc aaatttgtat tcattttgat atttttcaaa attatgttct
     9901 tttagtaaat ttaaatcttc aaagacattg cttactcttt tgtcttcatt tttgcaataa
     9961 gatatgtatt tgataatatc atagacatta tctttgtttt tatcatggat taagtcttta
    10021 attatttttt ttgtatcatc tgtatcgata acaataaaac tatttttacg ctccaatctt
    10081 tcaaaatgga gttttaaaaa taaaagtcca aatttatgaa aggtacaaag caaaggattg
    10141 tgattgcctt gcagaaaatt taatgctcta tgacgcataa cactagctgc tttatttgta
    10201 aaagtaagag taagagtgtt atgcgagggg atgcctactt caccgataag ataagcaaga
    10261 cgagtggtaa tagttttggt ttttccacta cctgcacccg ctaggataag catagctcca
    10321 tcaatgtgac ttaccgcttg tttttgacta tcatttaaat cttcaaatag attcattttt
    10381 tgaaaatatc tttatttttt ggattattta aaaatatatt tttagatttt tgtaaatttt
    10441 tactatcttc gcgtttataa aggctaaaat taacaaataa aatgctattt tctatttgaa
    10501 tttgcgtgat agctcctaaa tcaaccttta caaaactatc aaaatcatca tttccaaaac
    10561 ctgcgtgaaa ttgaatgaaa tctttattta gttgtatgga ttcaaaggtg tatcctccaa
    10621 gagcaaaaag agcataagga ttttgtttaa tatcaagctc tttgggaagt tcagggttaa
    10681 aatctatgaa atttgtattt gcaactatgg aaaattctat attttcttct ataaggtgtg
    10741 aaataacttc ataacaatgc ttttgcatgg tatggataaa attttcattt tttaagattg
    10801 tttctagcat gattgtaact ccatgaattc attgatgagt ttttgaattt cttttatgcc
    10861 tatttcccaa aaattttcat cttctatatc aaatccaaac attcctacta gttcttttgg
    10921 actcacgctt ccacctaaag aaagcatttt gatataaagt tctttaaaat tttcacattt
    10981 tttacttttg taaagtccat aaagagctaa aactaaaagt tgtgcatagg cataagcata
    11041 gcagtaaaaa ggagaatgga taaaatgagg aatataactc caccaagaag cataattttt
    11101 tgtaagtttt acgctgtctt gaaacatcct ttgagattct tccatccaaa ttttattgat
    11161 ttcttcggtg ctaagttcat tttcttgagc atgtaagcgt ctttcaaaac aagtaaaatt
    11221 aatttgtcta taaaaagttg caaaaatatc ttcgatttta tttgcatata aagataggag
    11281 ttcttctttt tttaacttat ctttaataaa atcaaatacg agcatttcag caaaaactga
    11341 agctgtttct gcggtggtta aaggcgtgtt ttgatttaaa tagcttacat tataagaaag
    11401 tttttgatgg atggtgtgtc ctaattcatg tgcaagtgta aaaagatcac gccttttatc
    11461 ggtgtagttt aataaaacaa aaggatgtgc atcagaagtt gcagaatgtg aaaaagcacc
    11521 cccttgttta ttttcttgtg gataaacatc aatccagcct tgattaaaag cattttttgc
    11581 tatattataa aattgcggag aaaaagcttg aaatgcctct aaaacaatat ttttacttgt
    11641 tttaaaatca aaacttgctt cttttcctat gggtgcatat ctatcatagt ctttaagctc
    11701 atcatagcct aaaatttgtt tttttctttt gtaaaattgc gatactaagt taaaatgttt
    11761 ttgcgcactt gctatcaaag aatcaacgct tttttgtgaa atttgattgc tgatatgtct
    11821 tgaaatttca gcattttcat aacctcttaa taagcttata ttttttcttt ctgtttttat
    11881 catattgata ataaaactta aaagtctgct atttttttgc aaaactttac tgaatttttt
    11941 agcagctttt ttgcgtatct ttctatcttc atcatacatt ttgcttagaa tttcttcttc
    12001 gctaagtttt ttaccttcaa aagggatttt taaagcactc atactttcat caaaaagtct
    12061 actaaaagca tttgcacctg tatttgaaag ataaagcata atgcgttctt cgtttttgct
    12121 aagattatag cgtttgtttt gcaataaatt agaaagataa aaatcataat ctttgcaaaa
    12181 agttgtaaat tctcgacttt tctcaggagc taactcgcaa aattcaagct cgaaaaagag
    12241 taaattttct tctatttttt tgcattcttc ttcgtattgt gcgtaaaaag aaccattttg
    12301 agtgttttta gcaaaaagca aataagcata agtcatgatt ttaccaagag cttgatttaa
    12361 attttcataa tcttttaaag cttgcaaaaa ctcattagca tttaatgtat aaagtttatt
    12421 ttcatagttt tttttgaaat ttaaactttg ttggatttga tcttgtgtaa aattttgcaa
    12481 tgattcttta tcgtgaaata aagcacttaa atcccattct aacatttttt atccttcatt
    12541 ttctagtatg agttttttaa gaacagccat tctaatagcc actccatttt taacttgttt
    12601 taaaactaaa gtcctttcat cgctcatcat ttcatcgctt atgtcaatat tgcgattaac
    12661 agggcctgga tgtagtaaaa taagcttttt atcctttact aagctttttt gaatgcaaaa
    12721 atcatttgca tagtctttaa gtgaagcata aacggtttta ttatgtcttt ctgtttgtgt
    12781 tctaagactc atgataatat ctgaatttgc tatgatattc tcatcaagct tataatgttt
    12841 tttaagatgg gtattaggca taaaatgtgg tggagctact agggtaatat caagattaaa
    12901 cctgcttaaa agttctatat tggacgctgc aacgcgggaa tttttaatat cacctacgat
    12961 gcaaattttt ttaccttcga catcgccttg aaaatgatta taaatagtaa ataaatctag
    13021 caaagcttgg gtaggatggg cgtgttttcc atctcctcca ttaacaactg gacaatgcat
    13081 atgctttgct aatatcaaag gaactcctga gtttgcgtgt cttacaacaa tagcattagg
    13141 actcatggca tctaaattag cagcagtatc ataaagagtt tctcctttgc tagagcttga
    13201 tcttaaaaca tcaaggcgta aaaccctagc acctaatctt cttgcagcgc tttcaaaaga
    13261 tgaaagggtg cgtgtagagt tttcaaaaaa aattgtcgtg atactttttc cttcaagaaa
    13321 agttctaggt ttttcatcta agaaatcact tgcttcttta aaaagctcca taatttcgac
    13381 tttattaaaa tcctttgtag tgatgagatg acgcatgttt ttaccttatt tgatattgta
    13441 atttaattca tttttagaac aaattgctgt aaaaagaaca tctgtagaac tatttaaagc
    13501 agtttcaaca ctatcttgaa taacccctat aataaaacct atggcaacta ccttcatagc
    13561 aatatcatag tctatattaa ataaagaaca agccaaaggt ataagcagta aagatccgcc
    13621 cgcaactccg ctagccccac aagctgcaaa agtggcaata atgcttaata aaaaggcttg
    13681 taaaagactg atttctatac caacggtatt ggctgcagta agacttaaaa tagctatagt
    13741 aactgctgct cctgccatgt tgatagtagc tcctaaaggt atagaaatgc tataaaattc
    13801 tttatctatg ccaagtttag cgcaaagtgc catatttaca ggaatatttg ccgctgaact
    13861 tcttgtaaaa aaggcaaaaa atgcactgtg ccttaagcag ataaaaatta aaggaaaagg
    13921 attttttctt gtataaaaaa agactattaa ggcattgata acaaaagtaa caaaaagcat
    13981 agtagctaca agtaaaatta aaagttttac ataacttagc aaaccttgtg ctcctgtttg
    14041 tgctacagaa ttagccacaa gtccaaaaat tccaaaaggg gcaagtttta ctacaaattt
    14101 aacgattttt aaaacccctt cattgatatc tataaaaact tgttttgctt cgttagaaca
    14161 gtgttttaat gctatacctc cagctattgc ccaagttaaa attcctaaat aatttccgct
    14221 tgaaagagca tttatgggat tatcgacaat tttaaataaa agatctttga aaatatcact
    14281 catgtgggtt ggagatgagt ttgtagcagt ttgaactcca tctaaaacaa gctttacggg
    14341 aaagaaaaaa ttagcaagaa ccgcacaagc tgaagcaaga aaggtgccta ctatatataa
    14401 aataataata tttttgatct tagcaccact ttgagaaaaa tctttagtgc aaattgaggt
    14461 taaaattaaa ataaaaacaa gcataggagc gatagctttt aaggcacttg taaaaagtat
    14521 tccaagtaaa tttgcaattt cagatatttc tttagaacta atgcctataa gtattcctag
    14581 tgctatacct atacaaattt gaactatgag gttgccttta gcgtagcttt gaatgatttt
    14641 agaaaacata aaaacctttt aaatattttt tatatcagaa gttgatttta actaactttt
    14701 gcttaatttt agagaatttt taatttatca agctttgata agtttatttg gatacaattg
    14761 tggttcattt taaatgaaag gactttttat gtatctattc acttcagaag tcgtaagtgc
    14821 aggtcatcca gacaagtgtg ctgatataat cgctgatacg atagtggata tactcttgaa
    14881 aaatgacaaa aattcaaggg tggcgagcga ggtttttgtc gcaggaaata aggttgtgat
    14941 aggaggcgaa gttaagtcaa atcacaaact tagtaaagct gattacgata atttagttaa
    15001 agatgtttta aaaaacattg gttatgacgg agcagggcat tttagcaaag agcagtgttt
    15061 gcatcctgat gaagttgatg ttatggtgtt tttaaatgaa caaagccctg atatcaatca
    15121 aggtgtcgat caagaagatg gcgaaacagg agcaggtgat caaggtatta tgtttggttt
    15181 tgcaagttgc gaagctgaag aatacatgcc agcagctatt agttatgcaa gaatgctatg
    15241 cgatagagtt tatgcttatg caaaagcaaa tccacatgaa cttggagtgg atattaaaac
    15301 tcaagtaact attgattatg gcactaaggc gaattttgaa aattgcaaac cgcaaagtat
    15361 ccatactata gtagtttctg caccttgtgt tgaaagtatg aaaatagaag atttaagatc
    15421 tttagtgatg aaacttatct tagatagtaa tttaccaaaa gaactttttg atcctaataa
    15481 aactagaatt ttaatcaatc caactggtaa atatgtcaat cactcttctt tacatgatag
    15541 tggtttaaca ggaagaaaac ttatagtaga tagttttgga ggttattctc caataggtgg
    15601 tggtgcgcaa tcgagcaaag attatactaa agttgataga agtggacttt atgcaggtag
    15661 atggttagct aaaaacatag ttgcagcagg gcttgctaaa aaatgtatag ttcaacttag
    15721 ttatgctata ggtgttgcaa aacctacttc ggtaagcgtg gattgtatgg gcacaaatac
    15781 cagtgtaaat gacgatgttt taagtgattt tgtaatgcaa aatttctctt taacgccaaa
    15841 ttggatccgt gataaatttc atctggataa accaagtaaa gaaacttttc tttatgcgga
    15901 tgtagcagct cgtgggcaag taggacaaaa ggactatcct tgggaaaaac ttgatgctct
    15961 agaacagttt aaaaagctac tttaaaaaat taacaatatt atacaagctt aaacaaggct
    16021 tgtataatta taaagaatta ataaagttat attaattttt gacttagagg gatatttttc
    16081 aatatccctc ataaatataa aagttaggaa ggaagctaaa ttaatttagc tttggggtaa
    16141 aaacccc
//
LOCUS       DAPIWU010000036        15875 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.036, whole genome shotgun sequence.
ACCESSION   DAPIWU010000036 DAPIWU010000000
VERSION     DAPIWU010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15875
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.036"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            39..1058
                     /locus_tag="RJ285_000860"
     CDS             39..1058
                     /locus_tag="RJ285_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383656.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSDININNNTIQKQETNLLDENQSLNNNTFNTSISE
                     NNQSLNNNTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERER
                     AVKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRINL
                     LKDMLSVIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSPY
                     LNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIE
                     ISSIK"
     gene            1081..3693
                     /locus_tag="RJ285_000861"
     CDS             1081..3693
                     /locus_tag="RJ285_000861"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDV7383657.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVDKEVILPISKKAIKIIADKHVEKDFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEARERIVAKLKSLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            3698..4708
                     /locus_tag="RJ285_000862"
     CDS             3698..4708
                     /locus_tag="RJ285_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HDV7383658.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNVKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            4705..5616
                     /locus_tag="RJ285_000863"
     CDS             4705..5616
                     /locus_tag="RJ285_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7383659.1"
                     /translation="MNEENISIVSAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            5809..6582
                     /locus_tag="RJ285_000864"
     CDS             5809..6582
                     /locus_tag="RJ285_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7383660.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGIKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            6631..7401
                     /locus_tag="RJ285_000865"
     CDS             6631..7401
                     /locus_tag="RJ285_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7383661.1"
                     /translation="MNLFKIIILAYILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     HSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            7411..8187
                     /locus_tag="RJ285_000866"
     CDS             7411..8187
                     /locus_tag="RJ285_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7383662.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            8271..8933
                     /gene="flgA"
                     /locus_tag="RJ285_000867"
     CDS             8271..8933
                     /gene="flgA"
                     /locus_tag="RJ285_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HDV7383663.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGILSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            8930..9493
                     /locus_tag="RJ285_000868"
     CDS             8930..9493
                     /locus_tag="RJ285_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDV7383664.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKTE
                     NQANLEEICQENFKYTYFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            9533..10009
                     /gene="coaD"
                     /locus_tag="RJ285_000869"
     CDS             9533..10009
                     /gene="coaD"
                     /locus_tag="RJ285_000869"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDV7383665.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            10000..10578
                     /locus_tag="RJ285_000870"
     CDS             10000..10578
                     /locus_tag="RJ285_000870"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDV7383666.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDF
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            10575..11801
                     /locus_tag="RJ285_000871"
     CDS             10575..11801
                     /locus_tag="RJ285_000871"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDV7383667.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEKVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            11798..13633
                     /gene="speA"
                     /locus_tag="RJ285_000872"
     CDS             11798..13633
                     /gene="speA"
                     /locus_tag="RJ285_000872"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HDV7383668.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            13634..14272
                     /gene="cysE"
                     /locus_tag="RJ285_000873"
     CDS             13634..14272
                     /gene="cysE"
                     /locus_tag="RJ285_000873"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDV7383669.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            14445..15614
                     /locus_tag="RJ285_000874"
     CDS             14445..15614
                     /locus_tag="RJ285_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDV7383670.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGKCDKDIEKMRQAFEKRRNLALDMLKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGTDGYFRLSYATSDELIEKGLERISHFIANYK"
     gene            15620..>15875
                     /locus_tag="RJ285_000875"
     CDS             15620..>15875
                     /locus_tag="RJ285_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HDV7383671.1"
                     /translation="MKRPLPFILAATNNGSMIINHLDRHDTPQGSYGVGFQFLNYGSF
                     DPEEIDLCINLLKLRREYYKDNVFAIDCGANIGAHTIKWAI"
BASE COUNT         6079 a         2262 c         2636 g         4898 t
ORIGIN      
        1 ctaaaattat ttaactttct gtttttaagg gatagcaaat gaatttgaaa attttttcta
       61 ttattgttgg catattaatt gctgttattg tgatattagg tggaacatat tattatcttt
      121 ttgaatattc aaaaccaaag aattacacct taaataccaa cacttacacc gaacaaaaat
      181 cgtataccaa taactacgat aattcctatt caccctcgat ccaaaccaac aatagttcat
      241 cagatataaa tattaataac aataccatcc aaaagcaaga aacaaaccta ttagatgaaa
      301 atcaaagctt aaataacaat acatttaata catcaataag cgaaaacaat caaagcttaa
      361 ataataacac caatacaagt aataatatta atacaaatga aaataagcaa attttagata
      421 cggataaaga aaaattaaaa caagaaaata aacaagccaa aatagaagct cttaaaaaag
      481 aaatcagcaa acaacaaaag atcttagaaa gagaaagagc tgtaaaaaaa gaacttcaat
      541 caaacaaatc aaacaaaaat aaatatctaa ataccgctag agagtatcta agcataggaa
      601 aaaacagtcg tttagaacct gagcttagca cagaaaatat gaaagtttac attttagatg
      661 gaaaattttt aagccaatac agaatcaatc tgttaaaaga tatgctaagc gttatacaag
      721 ataatgcaaa agattattat ctaagtattt ttgttaaaat gctaccaaaa ggggaaatga
      781 aattaactat ctataacaaa gaaattatct tttcagatat gaaaaaagct tataaatata
      841 ttagtttaga tagattaagc ccatatttaa acaatccaaa agaattaaat gaacatgtag
      901 cacgtgaaga aattttagaa agacttaaac ttcaaattaa aaaagacggc aaaggaagtg
      961 atttttctaa acatatcaaa agtttgaaaa ctggacttaa tacagcacaa tatttcttcc
     1021 cgttttgtga aattatagaa attagctcta ttaaataagc taaaacaata aaggcaaata
     1081 atgtatgata aaaatttaga aaaagagtat tatcaaattt gcgaagaacg cggatatttt
     1141 gaaatcgatg gcaataaaac catacaagaa aaagataaaa atttctgcat tatgatgcct
     1201 cctcctaatg tcactggagt tttacacata ggacatgctt taacttttac tctgcaagat
     1261 attatgacgc gttacaaaag aatggatggc tataaggttc tttatcaacc agggcttgat
     1321 cacgcaggta ttgccactca aaatgttgta gaaaaacaac tccttgctca aggcattaaa
     1381 aaagaagaac taggtagaga gaaatttata gaaaaagtct gggagtggaa agagcaaagc
     1441 ggtggaaaaa ttttagacca aatgagaaca ctaggcatca ctcctgcatg gagtcgcttg
     1501 cgttttacta tggatgaagg tttggttaat gccgtaaaaa aagcctttgt agaactttat
     1561 gataaaagac ttattgtacg tggaaactac atgataaatt ggtgtaccca tgatggcgct
     1621 ttaagtgata tagaagttga atacaaagaa aacaaaggaa aactttatca tattaaatac
     1681 tttttaaaag atagcgatga atttttagta gtagccacaa cgcgtcctga aacttttttt
     1741 ggcgatactg cagttatggt gcatcctgat gatgaacgct atactaaatt tgtggacaaa
     1801 gaagtgattt tgcctataag caaaaaagcc attaaaatca tagccgataa acatgtagaa
     1861 aaagattttg gaacaggagt tgtaaaagtt actcccgctc atgacatgaa cgattatgaa
     1921 gtaggactta gacataattt agattttata agtgtttttg atgaaaaagg aattttaaac
     1981 gagcattgtt tagagtttca aggtttagaa cgcttagaag caagagaaag aatcgtagcc
     2041 aaacttaaaa gtcttggttt tatagaaaaa atagaagagc ataacaatca aataggatat
     2101 tgttatcgtt gcaacaatat agttgaacct tatatctcca aacaatggtt tgtaaaaaaa
     2161 gaaatcgccc aagaaagtat agaaaaagtt gcgcttggag aaagcaaatt ttacccaaat
     2221 cactggataa atagctttaa tgcttggatg aaagatttaa gagattggtg tatttcaaga
     2281 caactttggt gggggcatca aattcctgtg tattattgcg aatgctctca tgaatgggca
     2341 agccaacata cgcctaaaac ttgtccaaaa tgtcaaagtc aaaatttcaa acaagatgaa
     2401 gatgtacttg atacttggtt ttcttcagga ctttgggcta tgagtactct aggctgggga
     2461 aatgaaaatt ggggtaaaga taaaatttgg tctgaaaagg atttaaaaga tttttaccct
     2521 aattctttac tcattacagg ttttgatatt ttatttttct gggtggctag aatgatgttt
     2581 caaagcacta atgccttaca tcaacttcct tttaaagata tttatttaca tgctcttgtg
     2641 aaagatgagc aaggtagaaa aatgagtaaa agccttggaa atgtcatcga tccaaatgaa
     2701 agcattaaag aatatagtgc tgatatttta cgctttactt tagcacttct tgctatacaa
     2761 ggacgcgata ttaaacttag caatgataaa cttttacaag ttagaaattt tacaaataaa
     2821 atttataatg ctacaaatta tctgctttta aatgaaagta aatttgaaga tttggaaaat
     2881 atcacacttc attcagaatt agcaaaatat atttatgcca aatttcaaac ttgtgttaag
     2941 gatgtaagag aaaatttaga caattatcgc tttaatgatg cagccaatac tctatataaa
     3001 ttcttttggg atgatttttg cgattggggt atagagctta gcaaagccga aaaatcgagc
     3061 gttaaagaac ttggtagtat tttcaaagaa gctttaaaac ttttaaatcc tttcatgcct
     3121 tttatcagcg agtatttata ccacaaacta agcgatacag aacttaaaac aagcccttct
     3181 attatgataa gcaaatatcc aaaatttaaa gaacaagata aaaatataga aaaaatcttt
     3241 tctttgctca tagaaagcat agttagtatc cgccgtgcta aaagtttaat cgatcttgga
     3301 aattctaaaa tagaaaaagc ttatatcaaa tttaacgata aaaaaatcaa agatgaaatc
     3361 aaagcttata tgaattttat cataatgctc gcaaagtgcg agcaaataga atttagtgaa
     3421 gaaaaattac caaaggcaat atgtgatgtt agcgagaatt tagaaatttt tattacgctt
     3481 gaaaatgttg atttaagtgg tattttaaca agacttgaaa atcaaaaaaa taagcttgaa
     3541 aaagaaagtt tcaagcttaa ctccatgctt tcaaatgaaa aattcatcgc taacgcacct
     3601 aaagaggtgg tggagcaaaa taaagaagct ctagaaaatt taaaaattca acttgaaaaa
     3661 atatcagttg aacttcaaaa tctaagaggt taaaaatttg ataaaaataa aaaatttaaa
     3721 aaaatattat ggcaaggaac tcgtgataaa cgatgtttct ttggagatta aaaagggtga
     3781 aatttacgcc atagtaggtc atagtggagc tggaaaatcc actcttttaa gatgtattaa
     3841 tggacttgag aattatcaag aaggaagttt aaaagtcttt gatcaagaaa ttaaagattt
     3901 aagtcaaaaa aaatcaaaag agttaagaat gcttagaaaa gatataggga tgatttttca
     3961 aaattttgcc ctaatggagc gcaaaaatgt atttgaaaat gttgctatgc ctttaagaac
     4021 acactatact cagtgtaaat ttcatgccaa gctttttaat aaagaataca tgagcgaaaa
     4081 agaaattgcc caaaaagtca attccttact tgaaatcgta gggcttgatc ataaaaacaa
     4141 atcctaccca agagaactga gcggagggca aaaacaacgc gttgctattg ctagagcctt
     4201 agctttaaac ccaaaaattt tacttagtga cgaagctact tcggctcttg atccaaacac
     4261 tacaaaaaat attttagagc ttatatctaa aatcaatgct gaatttggga ttactgttgt
     4321 tttagtaact cacgaaatgg atgtggtaaa agacatagct caaaaagctt tattacttga
     4381 acatggacaa atcataggaa gtggagcaat tgatgagctt tttttaaggc ctaatgtcaa
     4441 aatgaaagaa tttttaggag aaagcgactt cttgcctgag cacggactta atatcaaact
     4501 ttactttcca aaagaagttg cccaaaatag cgtcatcact catatggcaa gaactctaaa
     4561 tatagacttt aacatagttt ggggtaaaat agaaaaactg aatggaaaag ccttgggaaa
     4621 tttagttata aatataaatg aaaaggataa agacaaggtt cttgattaca tagaaaaaag
     4681 tggagtatta tgggaggtgg catcatgaat gaagaaaaca tctctattgt cagtgctttt
     4741 tttagtagaa tttctcaatt ttttaatgaa ttttcttggc aggatattaa agaagtgagt
     4801 ttaagttcta tcacgagttt caatgaaaat tatgaaaaca ttttaaaacc tgcacttaat
     4861 gaaacaattt atatgagttt aatggctgta ctatttggat ttttattggc tatcattcct
     4921 ggaattttac ttgctatttg ggataaaaat ggaattaaag aaaataaaat cgcttatagt
     4981 attttagatt ttattaccaa tatattacgc gcctttccat ttttaattct tatagttgtt
     5041 cttttaccac tttctaaaat catagtaggc acaagcatag gtacaaatgc tgccatagtt
     5101 cctttagcta tcggaatagc tccttatttg gcaaagatgc ttgaaagcgc ttttaaagaa
     5161 atagacaaag gaatcataga agcagcaaaa agttatggtg ctagcaatat tcaaattatc
     5221 ttcaaggtta tctttagtga ggcccttcct gctataatta gcggaattac cctaactttg
     5281 atctttacca ttggtttttc tgctcttgct ggaactgtcg gtggtggagg tttgggagat
     5341 gtcgctattc gctatggtta tgaaagattt aacaaagaag ttatgattca aactgtagtt
     5401 attttactta tattagttca gttagttcaa attctaggta atttatttta tacttgggct
     5461 aaaaatagta aaactacata tatcattgcc actctattga ttttacttgg agttagtata
     5521 gttatcaata taaacaatga tgaaaatttc ttttggcaag taattgtttt tatcttattt
     5581 ttaggaagtt tgctttataa aggtttcaaa aaataaggag attatatctc cttttaagat
     5641 aaatataagt ttttttaagt aaaatttaaa caaaaaacta taaggaatta aaatgatgta
     5701 tcagatgcgt taatctgact atcaacaagt ttttatatac ttcttcctga tagtcagagt
     5761 gaatttatta agattaaagc aagcacaaaa tgactaaaaa ggaaaaaaat gaaaatcaaa
     5821 tctttattta tagcaagtat tttaacatta agtcttaatg caaatgcatt agaaaccatc
     5881 acagttgcag caactcccgt ccctcatgct gaaatcctag aacaagtaaa acctgattta
     5941 gaaaaacaag gctataaact tgaaatcaaa gaatttacgg attatgtttt acctaatcta
     6001 gctgttgata acggagaagc cgatgcaaat tttttccaac atactcctta tttggaagaa
     6061 tttaataaaa acaaaggcac caaacttatc aaagtagctg ccatacacat agaacctatg
     6121 gctgtttact ccaaaaaata caaaagtcta gatgatatta aagaagggat taaaatcgcc
     6181 attccaaatg atccaaccaa tgaaagtaga gctttagata ttattgcaaa aaaaggtttg
     6241 gtaaaattta aagataaggc tttaaaaaca cctcttgata ttatagacaa tcctaaaaaa
     6301 attaaatttg tagaattaaa gcccgcacaa cttccaagag ctttggatga tgttgatttt
     6361 gctgtaatta attccaacta cgctctctct gcaaatctaa atcctgcaaa agatagcgta
     6421 tttatcgaag ataaagaaag cccgtatgca aacattcttg ttgtaagagt gggacatgaa
     6481 aacgatccaa aaatcaaagc cttaatccaa gctctacaaa gtgataaaat caaacaattt
     6541 atcatagaaa aatacaacgg atctgtttta cctgcttttt aattttgtcc cttacctagg
     6601 gacttttttc ttaaatacaa aggagttttt atgaatttat ttaaaattat tatactcgct
     6661 tatattctaa atttatctag cctatttgca caaaacatta ctataggagc cactccaaat
     6721 ccttttggta gcttactaga actaatgaaa gatgatttta aaaacaaagg gtatgagctt
     6781 aaaatagtag aattttcaga ctatattttg cccaatcgtg cattagagga aaaagaactt
     6841 gatgcaaatt tatatcaaca caaacctttt ttagaagaat acaacctaaa aaaaggttca
     6901 aatttaattg caacaacgcc tgtacttata gctccagtag gagtttatag taaaaaaatc
     6961 aaaaatttag aaaatcttaa agaaggtgct agagttgcta tacctaatga tgcgaccaat
     7021 gaaagcagag ctttagagct tttagagaaa gcaaaattaa tagagcttaa caaaaatact
     7081 ctaaaaaccc cattggacat aaacaaaaat ccaaaaaaac ttaaatttat agaacttaaa
     7141 gccgcacaac ttccaagagc tttagatgat gttgatattg ctataattaa ttctaatttc
     7201 gcacttggag ccggtctgaa tccaagtaaa gatactattt ttagggaaga taaaaatagc
     7261 ccttatgtaa attatgttgt ggtacactca gaagataaaa atagcgaaaa aaccaaagta
     7321 attgatgaaa ttttaagaag cgataaattt aaagccatca ttaatgaaca ttataaagat
     7381 atattaatcc cagcttttta ggagtataat atgaatatta aaaaaatatt tttaagtgtt
     7441 ttatttacaa ttagccttag ttttggggcg gataaaacca taatcatagg tgcaacacca
     7501 acgccttatg ctgaaatttt aaatttctct aaacccttat ttcaagaaaa aggttggaag
     7561 ttaatagtta aggaatttaa tgactataat atacctaaca tcgctttaaa tgaaaaagat
     7621 ttagatgcaa atttatatca gcataaacct tttttagatg attttaatac ccacaaagga
     7681 acaaaattaa gttctttagg tgctattgtt ttagttccta tggctatata ttctaactcc
     7741 ataaaagata taaaagacat tcctaatggt gctaaaatcg ctatacctaa tgatgctacc
     7801 aatgaaagca gagctcttga tttactagct aaagcaaatt taatagagtt taaaagtcaa
     7861 agcaccctta aaacccctat tgacataagt aaaaatccaa aaaaacttaa atttatagag
     7921 cttaaagccg cacaacttcc aagagcccta aatgatactg atttggctat tattaccaca
     7981 aactatgctc ttggagcagg cttaaaccct ttaaaagatg gtatttttat ggaagataaa
     8041 gatagtttat atgctattgt tttagctaca agaaaaggtg aagaaacaag tcaaaaaagt
     8101 cttgttatta aagaaatttt aacaagcgat aaaattaaaa attttatcat agaaaaatac
     8161 aaaggctctg ttatccctac tttttaactc tatacaaagc cttctaaagg ctttgttaaa
     8221 cttataaaag ctaaaatact atttattgca ttataattct taggataaaa atgaaaatta
     8281 tttttttaac tttttttatt gtgataaatt atatccaagc agctagttta gaagaaatca
     8341 aaacagcact agctaaagaa tttagaaata attttcctaa aattataatt tctcaaattg
     8401 atttaaaaat aacatcattg cctaaagatt ttgatcaata tgaatttcta agaatcgcta
     8461 atgggcgttt taatcaagca caaggctttt taagggctga atttaaaact ccgcaaaata
     8521 tacaaaaaaa tgtatttttt agatatttca ttcaagcaaa tttagaagtt ttaaaaagcg
     8581 aacgcgctat aaaaagagga gataaacttg gagcttttga ctataaaagc gtattgattg
     8641 attttgataa agttccttta aatgccttaa ccttagatga tgtagataat cttgtagcta
     8701 aaagcaatat taacaaaaac gccattttaa gagcaaatat gtttaaaacc acagctttaa
     8761 tacgccgaaa tgatcctata atcgggattt taagcgaagc aaatgttgat gttttaatcg
     8821 aacttgtggc tttgcaaagt gcaaatatgg gcgaaaggat tcgtgcaaaa aacaaagaag
     8881 gtaaagttat gcaaggcatc gtagtgggta aaaataggat gattatacaa tgaaggtttt
     8941 attaggaatt tctggttcaa gcagtgtcaa tttaggctta aaattattaa aaaatctaga
     9001 aaaccaatgc gaactttatt gcattttaac ccaaggtgca aaacttagct tcaaaactga
     9061 aaatcaagca aatttagaag aaatttgtca agaaaatttt aaatacactt attttttaga
     9121 tgataaaaat ttaagtctaa gtgtagcaag tggatctttt ggaatagaaa aaaccatcat
     9181 tgctccttgt tcaatttcaa gtttagcaaa aattcacgct ggttttgcag acactctttt
     9241 aatgcgtgct gcagcagtgg ccttaaaaga aagaaaaaaa cttatcttag gcgtacgcga
     9301 aatgcctttt tctactttaa atttagaaca tatgttaaaa cttagccaaa tgggagttat
     9361 tatcgcccct cctattatcg caagctattc taaagcaaac aatctagagc aaatggaaaa
     9421 ttttatcgca ggtaaatggt tagatctttt agaaataaaa cacaatttat atgaaaaatg
     9481 gcaaaatttt tagtttaaat ttgttatatt tttaaaaaaa attggagcaa aaatgacttg
     9541 tttatatcct gggacttttg atcctattac caacgggcat ttagatgtta taaaacgggc
     9601 tttaaaaatt tttgatgaag tcatcgttgc catagcaaaa agtgaacata aaaaaccttg
     9661 ctatgattta gaaaaacgca aagaactagc cctgctcgca acacaaaatt taaaaaatgt
     9721 taaaatcatt gcttttgata atttacttgt agatttagcc aaagaattaa aagttaatac
     9781 tataatccgt ggacttagag cagtgagtga ttttgaatac gaattgcaaa ttggctatgc
     9841 aaatcacgca ctttgggaag atatggaaac catttatctt atgccaagtc taaaacatgc
     9901 ttttatttca agttctattg tgcgttctat agtagcacat gggggtgatg taagttctct
     9961 tgttccaaaa gaaattctac cttttttaaa ggatcaatct tgtatgtagt ttttgaaggt
    10021 attgactgcg taggaaaaag tacgcaaatt tcacttttaa aagaaattta caaagatgcc
    10081 attttcacac tcgaacctgg cggaacagaa cttggaaaac atttaagaga aattttactt
    10141 aataaaactc atcctattaa caaaagagct gaactcttgc tttttttagc tgatcgtgct
    10201 caacattttg aagaaatctt aaaaaccaat caaaacaaac tcattattag cgatagaagt
    10261 tttatttcag gcatggctta tgccaaagat tttgaaaacg attttctttt tgctttaaat
    10321 agttttgctt tagaaaattt ttttccacaa aaaattatct ttttaaaagg agatgcaaac
    10381 cttatccaag aacgcctcag tcaaaaagaa ctagatagta tagaaaaacg tggcattgag
    10441 tattttttaa gtgtacagga caaactcgaa aaagtgcttc attttttaaa agaaaaaatt
    10501 tctgtagaaa ttttaacact tgacgcaaaa gaaagtaaag aaaaattaca ccaacaaata
    10561 aaggaatttt tacaatgatt aacgctttaa aaggaatgaa agatttatta gataaagatg
    10621 catattatta tgaaaaagtg attaaaacct gcgaaaaagt agctaaaaac tatggcttta
    10681 cttttatcaa tacaccgcat ttagaacttt gcaccctttt taaaagaagc gtaggagaaa
    10741 gttctgatat agtaggtaaa gaaatgtatg aatttatcga taaaggtgaa aatcatgttt
    10801 gcatgcgtcc tgaaggaact gctggggtgg tgcgtgccta tatagaaaaa aaactcgata
    10861 aaaacactag tgtgaaaaga tggttttatc atggttctat gtttcgttat gaaagacctc
    10921 aaaagggtcg cttaagagaa tttcatcaat ttggagttga aagccttggc atacctaatg
    10981 tttatgaaga tgcaagcatt attttaatgc tagtagaaat tttctcacgc cttggtattg
    11041 attttaaact tcaacttaat tctttaggct gctcacaatg cttgccaaaa taccgcgata
    11101 ggctcgttga attcttagat tccaaagaag gtttttgtga agattgtttg cgtagaaaaa
    11161 atttaaatcc tattcgtgtc ttagattgta aaaatgagca ttgtcaaaat ttgcttgaaa
    11221 atgctccgct tttgatcaat aatttatgca cctcttgcca aaaagacttt gaaacactgc
    11281 aacaaatttt aaaggataat ggagttaaat ttgagttaga ttcaaaactt gtgaggggtt
    11341 tggattatta ttctaaaacg gcttttgaat ttataagcga tgaaatagga gcaaaggctg
    11401 ctatcgcagg tggaggacgc tacgatagac ttatagagta tttaggtgga aaaagtggct
    11461 atggtatagg ttttgccatg ggtatagaaa gaattataac tattttagaa caaaaagaag
    11521 aaaagattca aagagaagga atttatcttt gtgctatgga tgaaatttat atccaaaaac
    11581 ttttgcatat cgctacaaat ttaagaaaag aatataaagt acttttaagc tatgaagcaa
    11641 gaaaactagc caaacatctt gaaaacgcgg ataaaaataa tactgaaatt tttctttgca
    11701 tgggagaaaa tgaagcacaa aatgaaagtt tgttttataa aaatttagca aaaaaagaag
    11761 aaaaaatgat taaaatttca gacttaaaga aggttttatg atggattatg gtattgatat
    11821 ttggggaaat gaaaatttca ttatcaaaaa tggtaaagtt tgtatcaatt acgagaaaaa
    11881 acctgctatt attgatatag ttaaagaatt aagagatgat ggatacaagg ggcctttact
    11941 tttaagattt cctcatctta tccaaaaaca aattgaaaat atttacggaa atttcaataa
    12001 agcaagaaag gaatttggct ataaaggagg atttaacgct gtttatcctt taaaggtcaa
    12061 tcaataccct ggttttgtaa aaaatcttgt aaaacttgga aaagactata actatggact
    12121 tgaagcaggt tctaaggcag agcttttact cgctatggct tataataacg aaggcgcacc
    12181 tattaccgta aatggcttta aagatagaga acttatcaac ataggcttta tcgcagctga
    12241 aatgggacat aatatcactt taaccataga aggacttaat gaacttgaag ctatcataga
    12301 catagctaaa gaacgcttta aacctaaacc aaatataggc ttacgcgtgc gtttgcattc
    12361 tgctggagtt ggaatttggg caaaaagtgg tgggattaat tctaaatttg gacttacatc
    12421 cactgaactc atagaagcgg taaatttact caaagaaaac aaacttttag aacaatttac
    12481 catgattcac tttcatctag gctcacaaat taccgaaatt caccccttga aaaaagcctt
    12541 aaatgaagca ggaaatatct atacagaact tagaaaaatg ggagctaaaa atctaaaagc
    12601 tatcaatctt ggtggcggtt tagctgtgga atactcacaa tttaaaaatg aaaaaagtag
    12661 aaattacacc ctaagagaat acgctaacga tgtagttttt atcctaaaaa acatagccga
    12721 acaaaaaaaa gatttagagc ctgatatttt catagaaagt ggacgttttg tagcagctaa
    12781 tcacgctgtt ttaatcgctc ctgtattaga acttttttct caagaatacg cagaaaacaa
    12841 actcatactt aaaaaacaaa atccaaaact tatcgatgag ctttatgatc tttataaaag
    12901 tataaaacct tccaatgctt tagaatactt gcacgatagc atagatcatt tagagagtat
    12961 tttaactctt tttgatttgg gctatgtgga tttacaagat cgttccaatg ctgaaatttt
    13021 aactcatttg attacaaaaa aagccatctt gcttttaggc gataagcaaa atcctgcgga
    13081 tttacttgcc atacaagatg aagtgcaaga aaggtatttg gtaaattttt cgctctttca
    13141 aagcatgcct gatttttggg gtttagaaca gaatttcccc atcatgccac ttgatcgctt
    13201 agatgaagaa ccgacacgaa gtgcaagtat ttgggatata acctgtgata gcgatggaga
    13261 aatttcatac tctaaagata aacctttatt tttgcacgat gtagatgtag aaaaagaaaa
    13321 ttattttcta gggttttttc ttgtaggtgc ctatcaagaa gtacttggaa tgaaacacaa
    13381 tctttttact catcctactg aagctattat aagcatcaat gaaaaaggct atgaagtcga
    13441 ggggattata gaagcgcaat ccatacttga taccttagaa gatttagact atgatataca
    13501 cgctatcatg gatatactta atgaacgcat aagtaattct aagcttgtaa atgataagca
    13561 aaaaaagcat attttaggcg aactttatct tttcttaaat gataatggtt atttaaaaag
    13621 cataggagtt tagatgaatt tttggggtat tataaaagaa gatttttctc agccaaaggc
    13681 acaagatcca gcttttaatt cttgtataga actttttttt aattaccctg gagtatgggc
    13741 tgtagtaaat taccgctttg cacatttttt ttacataaga aattttaaac gcattgctag
    13801 aatgattagc ggaatttcac aattcttaac tggggtagat ttgcaccctg gagcagaact
    13861 tggaaggcgt atttttatag atcatgccaa tggagtggtt ataggtcaaa cagcaattat
    13921 agaagatgat gttttaattt atcaaggcgt tactttaggt ggaacaagcc ttgaaaaagg
    13981 tactaaacgc catccaacca taaaaaaagg agtgatcata ggctcaggcg caaaagtact
    14041 tggcaatatc accataggag aaaatgccaa aataggctca aatgctgtag tggttaaaga
    14101 tgtaggtgca aatttaactg ccgttggaat tcctgcttat attatcgaag agcgtaaaaa
    14161 taaaaacatt agagctatag atgcaaattg cgatgacaaa ctagaaaagt tagaaaagaa
    14221 aattttagaa cttgaaaatc ttatattaaa acaacctgaa tcacaaaaat aataattttt
    14281 tataatacat aaaattatat gtattattat gcgtattaat ttttcctaaa aaattaatac
    14341 aaattttcac atttattgaa atttataact catttttaaa ttaaatttat tgtaaaaatg
    14401 caattttctg ctaaaattaa acaaaaatta ttaaggattg aaaaatgctt acaaaaagat
    14461 ctcaagtttt agaagaatct atcactttag ctatcactgc acttgccaat gaacttaaag
    14521 ccaaaggcga ggatatcatt agtttttcag cgggtgaacc tgattttgac acaccacaaa
    14581 ccatcaaaaa tgccgctata agtgctattg aaaaaggatg tggaaaatac actgctgttg
    14641 caggaattcc tgaagtatta aaagctattc aaaccaaatt taaaaaagat aataatcttg
    14701 attatgaaac aaatgaaatc atcaccaatg taggtgcaaa acactctctt tttgaatgta
    14761 tagaatgctt agtagaaaaa gatgatgaag tgattatccc tagtccttac tgggtaagct
    14821 atcctgaaat ggtaaaattt gcaggtggaa aacctgtatt tatagaaggc ttagaagaaa
    14881 atggctttaa aattaccgct gaacaactaa aaaaagctat cacagctaaa accaaggttt
    14941 taatgttaaa ttctccttca aatcctgtag gatcgattta ttctaaagaa gaattaactc
    15001 aaattgctaa agttttagaa ggaactcaaa ttaccgtttt aagtgatgaa atgtatgaaa
    15061 aacttcgcta tgatggtttt gattttgtag cttttgcaag tgtaagcgaa gacgctttaa
    15121 aacgtactgt gactattaac ggacttagca aatgtggagc tatgccagga tggcgttttg
    15181 gctatatggc aagcaaaaat aaagccctaa tttcagccgt taaaagactt caaggacaaa
    15241 gcacttcaaa tatttgctcc attactcaac atgcagccat tcctgcttta aatgggaaat
    15301 gtgataaaga tatagaaaaa atgcgtcaag cctttgaaaa acgccgtaac ttagctttag
    15361 atatgcttaa acaaatccca aatatcagtg tttataaacc agaaggtgct ttttatcttt
    15421 ttgtaaatat acaaaaaata gaaaaagatt ctatgaaatt ttgccaaaaa ttacttgaac
    15481 aagaaaaagt tgccgttgtt ccaggcatag gttttggcac ggatggatac tttagacttt
    15541 cttatgccac aagcgatgaa ctcatcgaaa aaggtttaga aagaataagt cattttattg
    15601 caaattataa gtagtttcca tgaaaagacc tttacctttt atacttgcag ctacaaataa
    15661 tggatctatg attattaatc atcttgatag acatgatacg cctcaaggaa gttatggagt
    15721 tggttttcag tttttaaatt acggcagttt tgatccagag gaaattgatc tttgtattaa
    15781 tcttttaaaa ttacgcagag aatactacaa agataatgtc tttgccatag attgcggtgc
    15841 aaatattgga gctcacacta ttaagtgggc tatag
//
LOCUS       DAPIWU010000037        15284 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.037, whole genome shotgun sequence.
ACCESSION   DAPIWU010000037 DAPIWU010000000
VERSION     DAPIWU010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15284
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.037"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            75..974
                     /gene="hisG"
                     /locus_tag="RJ285_000876"
     CDS             75..974
                     /gene="hisG"
                     /locus_tag="RJ285_000876"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDV7383672.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            982..2268
                     /gene="hisD"
                     /locus_tag="RJ285_000877"
     CDS             982..2268
                     /gene="hisD"
                     /locus_tag="RJ285_000877"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDV7383673.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASKHLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            2265..3323
                     /gene="hisB"
                     /locus_tag="RJ285_000878"
     CDS             2265..3323
                     /gene="hisB"
                     /locus_tag="RJ285_000878"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDV7383674.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVHGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            3320..3907
                     /gene="hisH"
                     /locus_tag="RJ285_000879"
     CDS             3320..3907
                     /gene="hisH"
                     /locus_tag="RJ285_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDV7383675.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKTKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            3904..4635
                     /gene="hisA"
                     /locus_tag="RJ285_000880"
     CDS             3904..4635
                     /gene="hisA"
                     /locus_tag="RJ285_000880"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDV7383676.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLEN"
     gene            4620..5558
                     /locus_tag="RJ285_000881"
     CDS             4620..5558
                     /locus_tag="RJ285_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HDV7383677.1"
                     /translation="MSGKLTYKELIIEVLKQTKKPLNVSEIWQKALEKGLDKKLSSIG
                     QTPTQTIWNRLLTDKINFLKTSIKPTTFWLKERENELLKLDNKNEITNEKQEKNKFHE
                     RDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYDDYEKET
                     ITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEVL
                     SELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKEFIDDIN
                     KQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            5559..6326
                     /gene="hisF"
                     /locus_tag="RJ285_000882"
     CDS             5559..6326
                     /gene="hisF"
                     /locus_tag="RJ285_000882"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDV7383678.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINISFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            6328..6951
                     /locus_tag="RJ285_000883"
     CDS             6328..6951
                     /locus_tag="RJ285_000883"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDV7383679.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(6976..8136)
                     /locus_tag="RJ285_000884"
     CDS             complement(6976..8136)
                     /locus_tag="RJ285_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HDV7383680.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(8162..9268)
                     /locus_tag="RJ285_000885"
     CDS             complement(8162..9268)
                     /locus_tag="RJ285_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HDV7383681.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNIIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            9391..10506
                     /locus_tag="RJ285_000886"
     CDS             9391..10506
                     /locus_tag="RJ285_000886"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HDV7383682.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSNVNLKYFDWTRL"
     gene            10503..11390
                     /locus_tag="RJ285_000887"
     CDS             10503..11390
                     /locus_tag="RJ285_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDV7383683.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            11368..12528
                     /locus_tag="RJ285_000888"
     CDS             11368..12528
                     /locus_tag="RJ285_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HDV7383684.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            12533..13033
                     /locus_tag="RJ285_000889"
     CDS             12533..13033
                     /locus_tag="RJ285_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDV7383685.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            13112..13375
                     /gene="rpsT"
                     /locus_tag="RJ285_000890"
     CDS             13112..13375
                     /gene="rpsT"
                     /locus_tag="RJ285_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDV7383686.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            13394..14461
                     /gene="prfA"
                     /locus_tag="RJ285_000891"
     CDS             13394..14461
                     /gene="prfA"
                     /locus_tag="RJ285_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDV7383687.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(14475..15230)
                     /locus_tag="RJ285_000892"
     CDS             complement(14475..15230)
                     /locus_tag="RJ285_000892"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HDV7383688.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVIHVGASGNPHKFLHKH"
BASE COUNT         5545 a         2287 c         2569 g         4883 t
ORIGIN      
        1 ttctaaaacc cttgctaaaa attcaactac ttatgctaat ataagttttt aatttttaat
       61 ttcaaggata tgttatgcaa gaaaacactc gtttacgcat tgcgatacaa aaatcaggta
      121 gactttcaaa agaatccata gagcttcttt cagaatgtgg tgttaaaatg catatccatg
      181 aacaaagctt gatcgctttt tctacaaatt tacccataga tattttacgc gttagagatg
      241 atgatatccc tgggcttatt tttgatgggg ttgtagattt aggcattata ggggaaaatg
      301 ttttagaaga aaatgaactt gaacgccagt ctttaggaga aaatccaagc tataagcttt
      361 taaaaaagct agattttgga tattgccgtc tttctcttgc cttacctcaa gaaaataaat
      421 ttcaaaattt gaaagatttt gaaggcttaa ggatagctac ttcttatcca caacttttaa
      481 agcgttttat gaaagaaaat gggattaatt ataaaaattg tacgcttaca ggttctgttg
      541 aagtagcccc tagggcaaat ttagccgatg cgatttgcga tcttgtttca agcggggcaa
      601 ctttacaagc aaacaatctt aaagaagtta aagtcattta tgaatctcgt gcttgtttga
      661 ttcaaaaaga aaatgcttta agtaaagaaa aacaagcctt agtggataaa attatgttgc
      721 gtgtagcagg agtaatgcaa gcaagagaat ctaaatacat tatgcttcat gctccaaaag
      781 aaaagcttga taaaattcaa gccctacttc caggagttga aagaccgact atcttacctt
      841 tagcacacga tgaaaaaaat gtagctttac atatggtaag taaagaaaat cttttttggg
      901 aaaccatgga ggctttaaaa gaagaaggtg cgagttcgat tttagttctg cctatagaaa
      961 aaatgttaaa gtgagtaaaa aatgcaaatt ttagtatatg ataatttgga tgaaaaacaa
     1021 aaagaagaag cgttaaaacg ccctgctata agtgcgaaag atgaaatttc aaaaatagta
     1081 agttctatca ttaaagaagt gcaagaaaaa ggcgatgaag ctttgataga acaagctttg
     1141 aaatttgata aggctgaaat ttcaaagatt aaaatcactc aagaagaaat cactcaagca
     1201 agcaagcatt tagataaaga tttacaagaa gctattttag tggcttatga aaatatcaaa
     1261 aaatttcacg aagcccaaat cccacatgaa atcgctcttg aaactacaaa aggcgttaaa
     1321 tgtgaagttt taacacgccc tatagaaaaa gtaggacttt acataccagg gggtttggca
     1381 cctttgtttt caacggtttt aatgctagct attcctgcaa aaattgcagg ttgtgaaaaa
     1441 atcgttttag caagtcctgc aaaaatcaat gatgctgtgc ttttttgtgc taagctttgt
     1501 ggcgtggatg aaatttatca aatgggtggt gcaggagcta tagcagcttt ggcttacggt
     1561 acccaaagtg ttttaaaggt ggataaaatt tttggcccag gaaatgcctt tgtaaccgaa
     1621 gcaaaacgcc aagtaagtag tgatataaac ggagcagcta ttgatatgca agcaggacct
     1681 agtgaagttt tagtcatagc tgatgattta gctaatgaaa aatttgtagc tagtgatttg
     1741 ctttcacaag ctgaacatgg tgcagattct caagtgattt tagtgtgttt aagtcaagat
     1801 tttgctaaaa aagcaagtga tgaagtccaa agtcaattag aacttttgcc tcgcaaagaa
     1861 cttgcaagca aaagcattgc taattcacgc attatcatag ctaaagattt aaatcaagcc
     1921 ttagaaattt caaatcttta cgcccctgaa catttgatca tacaaactca aaatccacga
     1981 gaacttttaa aaggtgtaaa acacgcagga tcagtatttt taggagctta ttccccagag
     2041 tctatgggtg attatgcaag tgggacaaat catgttttac ctacttatgg acttactaaa
     2101 acgcattcta gtttaggttt ggcagatttt agcaaaagaa tgaccgttca agagttaagt
     2161 aaagaaggtt ttttagcttt aggtaaaagt gttgaaattt tagcacaaaa tgagcattta
     2221 gacgcgcaca aaaatgcagt aacttttcgt ttggaaagct taaaatgagt caaaaaatcc
     2281 tttttataga tagagatggc actttaatag aggagccaaa aagcgatttt caaatcgata
     2341 ctcttgaaaa attgcgtttt gaaaaagatg ctattcccac tcttttaaaa ctaaaaaaat
     2401 ttggatttaa atttgttatg gtaagcaatc aagacggtct tggaacacca agttttccaa
     2461 aggaaaattt tgaaatcgct catgaaaaaa tgcttgatat tttaaaaagt tgcggtatag
     2521 aatttcaaga tatttttatt tgtccgcatt ttgaaaatga aaattgtgct tgcagaaaac
     2581 ctaaaaccgc tatgttagaa gagtatatca aacacgaact ttatgataag gagcaaagtt
     2641 ttgttatagg agatcgtgag agtgatatga tcttggcttc aaatttaggc gtgcatggtt
     2701 taaaatacgg cgaactttct tggaaagaaa tagaaaatga aattttaagt tcttttagaa
     2761 gcgcgagtta tcaaagaact actaaagaaa cagatataaa agtaaaggta tgcttaaatg
     2821 ggggtaaggt tagcattaaa acaggtattg atttttttga tcacatgtta gagcaaatcg
     2881 ctgtacatgg aggtataggg cttgaaattt cttgtaaagg agatttggaa atcgatgagc
     2941 atcatagcgt tgaagatgta gccttagcac ttggagcttg tatcaaaaaa gctttagggg
     3001 ataaaatcgg cattgcaaga tatggttttg ctttacctat ggatgagtgt ttggcaagtt
     3061 gtgcgatgga tttttgcaat cgtccccatt tagtctataa agccaaattt aaaaaatctc
     3121 atttaggggc tttaagcaca gaaatgatcg agcacttttt ttattcttta agctatgcta
     3181 tgggcgtgag tttgcattta aaagttaaag gcaaaaacga tcatcataaa gccgaagggc
     3241 tttttaaagc ctttgcaaaa gctttgaaaa tggcagtaaa aatagaaagt gaaaatttag
     3301 ccagctctaa aggagtgata tgaaaatcat catcatcgat acagcctgtg cgaatttagc
     3361 atctttgaaa ttttgtctag atagattagg ttttaatgca actatcagta gggatttaaa
     3421 agaacttgaa agtgcggata agcttttttt acctggagtg ggtaccgcaa aagaagcaat
     3481 gaaaaattta gaacaattta atcttattga ttttattcaa aataccaaaa aacctttgct
     3541 tggtatttgt ttaggtatgc aaattttagg aaatttttct gaagaattaa atcaagaaac
     3601 cttaaaactc atagatttta caactcaaaa atttaaaact aaagaaggct ttacttttcc
     3661 acatatggga tggaatgaag tttatagctc tcatgctttg tttaaaggct tagaaggggc
     3721 ttatttttat tttgtgcata gttattgtgt aggacttggg aaatacacta tagcagattg
     3781 tgagtattcg caaaaattta gcgcaagcgt aatgaaagat aatttttacg gagtgcaatt
     3841 tcaccctgaa agaagtagcg aggctgggga aattttaatt tcaaatttta ttaaggatat
     3901 aggatgactc aaatcatacc cgcactcgat cttatagatg gcgaagtggt gcgtcttgta
     3961 aaaggggatt acgaacaaaa aaaagtatat aaatacaatc ccttaaagaa atttaaagaa
     4021 tacgaaaaag caggagcgaa agaacttcat cttgtagatc ttacaggtgc aaaagatcct
     4081 agcaaaagac aatttgcttt gatagaaaaa ttagccaaag aagtcagtgt caatttgcaa
     4141 gtaggtggag gtatacgctc taaagcagaa gttagagctt tgcttgattg tggagtaaaa
     4201 agagtagtta taggatctat ggcaattaaa gatgcgactt tatgtcttga aattttaaaa
     4261 gaatttggta gtgaagctat agttttagcc ttagatacga ttttaaaaga agattatgtt
     4321 gtggctgtaa atgcttggca agaagcaagc gataaaaagc ttatggaagt tttagatttt
     4381 tatagcaata aaggcttaaa acacatactt tgcacagata tttcaaaaga tggcaccatg
     4441 caaggagtaa atgcaagact ttataaactt atccatgaaa tttttcctca tatttgcatt
     4501 caggcaagtg gtggagtagc aagcttaaaa gaccttgaaa acttaaaagg aatttgtagt
     4561 ggggttatcg taggaaaagc tttattagac ggagttttta gtgtagaaga agggataaga
     4621 tgtctggaaa attgacctat aaagaattaa ttatagaagt tttaaaacaa actaaaaagc
     4681 ctttaaatgt gagtgaaatt tggcaaaaag ctcttgaaaa aggcttagat aaaaagcttt
     4741 ctagtatagg acaaacaccc actcaaacaa tttggaatag gttgcttaca gataaaatta
     4801 actttcttaa aacctcaata aaacctacaa ctttttggct aaaagaaaga gaaaatgaac
     4861 ttttaaagct tgataataaa aatgaaatta ccaatgaaaa acaagaaaaa aataaatttc
     4921 atgaaagaga tttacacccc ttgcttgtaa aatttttata tgaaaattta gattttaatt
     4981 taaattgcaa aacaatttat cacgaacaaa gcaaaaaggg taagggcggg gaagataagt
     5041 ggaattatcc tgatattgta ggggtttatt ttccttacga tgattatgaa aaagagacca
     5101 taacactttt agaaaatatc aaacaaaata gttataagct tttttctttt gaacttaaaa
     5161 ttgctttaaa tttttcaaat ttaaaagaat gctattttca agctgtaagc aattctagct
     5221 gggcaaatga aggctatttg gttgttttac aagaaattga tagcgaagtt ttaagtgagt
     5281 taagacgctt aaatcaaagt tttggcatag gagtgataaa acttgaaaaa gatatttcaa
     5341 attctcaaat tttaattagt gcaaaagaaa aagaacttga tattcaaaca ctaaatatgc
     5401 tgatcaataa aaatccaaat tttaaagaat ttattgatga tataaacaaa caaattaaag
     5461 tgggcaaaga agcaaaaatt caagctaatt ttgatgaaat taaaagcgat gaagaaatgg
     5521 aaaaatatct taaagaaaaa tgtattttgg agaaataaat gcttacaaaa cgcataattg
     5581 catgtttaga tgtcaaagat ggcagagtag taaaaggaac acaatttaaa aaccataaag
     5641 atatgggaga tatcatagag cttgctaggt attattctca aaatggtatt gatgagcttg
     5701 ttttttatga tattgctgca agtgctagaa aagaacgcat atcaagagaa tgggtaagtg
     5761 aagtagcaaa aaatatcaat atttcttttt gtgttgcagg gggtattaaa agcgaagaag
     5821 atgcagctga acttttggct aatggggcag ataaaatttc tatcaattct cctgctttaa
     5881 atgatccaag cctaatcaca cgccttgcta aaagctttgg cgtgcaatgc gtagtagtag
     5941 ggattgatag ttttaaagat gaaaatggaa atttaaaagt atttcaatac acaggggatg
     6001 aaaaaacaag taaacatagt ggaaaaagca ctttagaatg ggttaaaaaa gtgcaagatc
     6061 taggtgcagg cgaaattgtt ttaaatatga tgaatcaaga tggtgttaaa aatggctatg
     6121 atttagaaca attagaagct gtatataaaa tttgtaaagt acctttgatc gcaagtgggg
     6181 gagcgggaaa aatggaacat tttttagaag cttttaaact aggtatagat ggggctttag
     6241 ctgcttctgt ttttcatcaa aaacttatag acattaaaga attaaaaatt tatcttaaaa
     6301 atcaaggctt aagtataagg atataatatg caaaatttca aagaacttaa tgaaaaaatc
     6361 gcttggcaaa aagtggataa tcttttacct gtcatcatcc aagatgcaaa aacttgcgaa
     6421 gttttaatgc taggctttat gaataatgaa gccttagaaa aaagcttaga aagtggcaaa
     6481 gtagtctttt tttcacgcac aaaacagcgt ctttggatga agggtgaaga aagtggaaat
     6541 ttcttaaata tcatagattt aagcttagat tgtgataatg acacgctttt aattttagca
     6601 aatcctgtag ggcctacttg tcatacgggc gatatttctt gttttgaaaa aatttctaaa
     6661 aatgcagatt ttgtttttct agccagactt gaaaaactta ttaatgcacg caaaaatgcc
     6721 gatgaaaata cttcttatac agcaaaactt ttcaaaagtg gtacaaaacg catcgcacaa
     6781 aaagttggtg aagaaggcgt agaaacagct ttagcagcga cagtaaaaga taaagaagag
     6841 cttatttgtg aagcagcgga tttaatgtat catttaagtg ttttacttgc agatgcaaat
     6901 cttagtttct cagatgtgat ttcaaaatta aaagaaagac ataaagctta aagctttatg
     6961 taaaataaat ttatatcaat gcaaggcttc attaagtttg actgcttttt tatttaaagc
     7021 tactatcata gcaccactta tagaatcttg acggaaatgt agcccattta aacctttaag
     7081 ctctaagcct ttgtaaattt ctttatcaaa attaaaataa ggattaagtt tagcaagttc
     7141 ttcggcatct ttgagtaaaa atttcgttcc ttctagcact gcaatacctg catcaactat
     7201 acaattatcc cctaaaggaa ttcctgtcac tgaattagcc cctaaaagac aagccttgcc
     7261 tacgcttata gcattgccac ttgttccact taaaacacct aaaatcgaag ctccgccacc
     7321 tacatcagaa ccttctccta ctatagcact tgaactaata cgcccttcaa ccatacaagc
     7381 tcctgttgta cctgcattaa aattcacata acttgcccct ggcatgatgg ttgttcctgc
     7441 tgctaaagac gcacccattc ttactttaga actttctaaa attcttgtat tatcctcagg
     7501 gataatatgt gctaaaaatc ttgggaattt atcaacaaaa tcgatttttg gatattgatt
     7561 gctcattttt aaacgcattt catttgctct taaatactca agctcgatag gcttatcatc
     7621 actccaagct acattgctta aaagtccaaa agctccattt aaattgatac ttcttaaagg
     7681 tactttttta gtagaaagca aataaagttt tagataaata ctttctacac ttaaaggttc
     7741 tttatcttca aaaagacaaa caaaagaaaa ttcatcgtct ttaaatttat ctttgataat
     7801 ctttaataaa tcaatatttt gatgcccatc ttcttctaaa aaaggtttaa aacaagaaag
     7861 tgcaaaatca atatcttcta atttcaaagt ttgcacaaac tcactcgcat taaaatcaat
     7921 ctccacgccc ctttgcataa aagcttcaag catgattgcc gctgagccaa aattttgctc
     7981 atagttaatc aaagcaaaac ttgcttgtaa gattttattt ttatttaact gtcctctatc
     8041 aagccttgct ataccaaaag ctttaggttt tttatagcca cttttttgct cgatttgttt
     8101 gattaaaagt aaaaaatctt ctttagtatt aatcattttc ttttccttat ccacttaatt
     8161 tttaatgcga acacgcactt tttccattca tcacaggttg tatagcagaa ttatccgcac
     8221 caccttcatt gttaatcttt tctataaaac tccaaatttt ttcagccgcc attaaataac
     8281 gccttgaact cacactttca gggtgataaa aactcacagg cttgccttca tctccacctt
     8341 ctcttactat catttctata ggaatttgtg ctaaaacttc acttttatag gcttttgcca
     8401 tatcttcagc tgttccttta ccaaaaatat catactcttt accattatca ggacataaaa
     8461 atccactcat attttcaatc acacccgcta taggaatatg aagtttatta aacatatcta
     8521 aagctctttt gctatcgtct aaagatacgg tttgaggcgt gcttacacaa actcctgcag
     8581 taataggaat actttgcgca gaagtaattt gtgcatcgcc tgttcctgga ggcatatcta
     8641 aaaacaatac atcaagttca ggccaaatca catcagctaa aagttgctcg attgctttca
     8701 taatcatagc tccacgccac ataaggcctt gaccctcttc gatcaaaacc cccatactca
     8761 tcatataaac accatgagtt aaaataggct ttaatctctg ccctactact tcaggctgag
     8821 ttttggtttc acctagcatt cttggaatat ttggcccata aatatccgcg tctaaaatac
     8881 ctactctttt tcccatttta gccatggaaa ttgctaaatt tactgtagtt gtagatttac
     8941 ccacaccacc ttttccactt gaaaccatga tgaaattttt tacttgtgga gcgatatttt
     9001 ttccacttct tgaattactt ttttcttcag gaatttttgg agtaatgata ttaagttcaa
     9061 tattttttaa agccaaactc gataaagctt caataatatt tttacgaatt tcattagcta
     9121 cttcaggatt tgctgaaacg atttctatat caatgaatac accatcatct tgaattttaa
     9181 tatcttttac aaagttaaaa ctcactatat ccttttcaaa accaggatat tttacagttt
     9241 ttaatttctc taaaatttgt tctttcatat tttttccttg tcttttaaaa aaatcaattt
     9301 tactaataaa atgataaaat ttagcttttt ataagtgtat aatatggtaa cattataaaa
     9361 accaacaata ttaaaaagag gaatgaaaaa atgagtgaaa tgagcctcat tatgttagca
     9421 gctggaaatt ctactcgttt taatacaaag gtaaaaaaac aatttttacg acttggaaat
     9481 gaccctcttt ggctttatgc aacaaaaaat ttaagctctt tttatccttt taaaaaaata
     9541 gttgttacct ctagtaatat cacttatatg aaaaaattta ctaaaaacta tgaattcata
     9601 gaaggtggtg ataccagagc agaatcctta aaaaaagcct tagagctcat agatagcgaa
     9661 tttgttatgg taagtgatgt agcaagggta ttggtgagta aaaatttgtt tgatcgtttg
     9721 attgaaaatt tagataaagc agattgtatt acccctgctt taaaagttgc agatacaaca
     9781 ctttttgaca atgaagcctt gcaaagagaa aaaatcaaac tcattcaaac cccgcaaatt
     9841 tctaaaacca aattgcttaa aaaagccttg gatcaaaacc tagaatttac agatgatagc
     9901 acagctatag ctgcaatggg tggaaaaatt tggtttgttg aaggtgaaga aaatgcaaga
     9961 aaactaacct ttaaagaaga tcttaaaaaa cttgatttgc ctacacctag ctttgaaatt
    10021 tttactggca atggttttga tgtgcatgaa tttggagaga atcgcccttt gcttttagca
    10081 ggagtgcaaa ttcatcctac tatggggctt aaagcacaca gcgatggaga tgttttggct
    10141 cactctttaa ccgatgcgat tttaggtgct gcaggacttg gagatatagg agagctttat
    10201 cctgatactg atatgaaatt taaaaatgcc aactccatgg agcttttaaa acaagcttat
    10261 gataaagtca gagaaatagg ttttgaactc attaatatag acatttgcgt catggcacaa
    10321 agccctaaac ttaaagactt taaacaagct atgcaaagca atatagctca tactttagat
    10381 ttagatgaat ttagaatcaa tgttaaagcc acaacaacgg aaaaattggg ttttattgga
    10441 agaaaagaag gtatggcggt gcttagtaat gtaaatttaa aatattttga ttggacaaga
    10501 ttatgaaagt tttaattatt gaaaatgaaa tttatctagc gcaaagcatt agcattaaac
    10561 taagtgatgc tggatatagc tgtgaaatta ttaactcgtt tgatgaatac aatggtgaaa
    10621 aatactatga cattatactg ctttctacaa atactaataa ttttctaaaa gccgtaggtc
    10681 agtttaaaca tagtattatt attttgctta tttcttatat aagtacagat acagtttcaa
    10741 atcctttgaa attaggtgct agtgattata ttcaaaaacc ctttatgata gaagagctga
    10801 ttagaaaaat aaagcattat caggatttta gaaaactttc aattcttaat aaagcttatc
    10861 aaagctatat caaatcaaga ttagaaacaa tcaaaattcc agagtataat tataaaaaat
    10921 taaaacttcc attgatatta aaatccaaca agcaaagcag tgctgatgct tttgttttta
    10981 attatgcaaa tgaatgtgac attactcttt cttttattga tttaacatct acaaattcag
    11041 ttgaaaaagt tatgaaactt cccacagaaa acaatctctt atttttgagt aattttcaag
    11101 cattaaaagc aacagaaaag gaaaaactcc tagattttat acaaaacaaa aatgttattt
    11161 tgcataccaa ttcaaataca gatgatttaa aaataaactg cattaattta aatgataatg
    11221 aaaaaaatat caatagcaat gaaattttaa ctatagatga gtatgtaaaa tatgttatta
    11281 taaattacca aaatatattt cctgatactg atctttcaaa aaaattaggc atttcacgta
    11341 aatctttatg ggaaaaaagg aagaaatatg aaatcagcaa gaaaaaataa aaacattacc
    11401 atagatcaaa atgaatttgg catcttgtca cttattaaag aaggtttgct aggtacttgc
    11461 actcatttaa tgaatgaaaa agaagtcaat gaaatcatta aatcaggaaa atttaaagga
    11521 gaaagttttc cctatccctt aagctttgca ccaaaaaatg ctgaagaagc actaaatgat
    11581 ataaaatctg gcgatagaat cgatctcata ctagatgaaa aagtagtagg acatatagat
    11641 tttaaaagcc aatttaaaaa taataaaaat ttttctgata ttttcagtcc taacacttgc
    11701 tctttagaag acatgggaac aacttgcata agtggaaaaa tagaaattta taattctcaa
    11761 attgaaaaaa taaaagaaaa ttttcaacaa atcaaaaaca atcttaatgc acaaaaaatt
    11821 actgctatag tttcaagttt tgatcctttg catcgtgccc atgaaagaat gtttcgttgg
    11881 actattgata aagcagattt agttgtaatt tttcttgtag aatcttttga tgtaaatggg
    11941 tttgaattcg aacttaaaga agcatatttg aaaaaattta ttcaaaacta tcttccaccg
    12001 gatagaattt tcatttttcc attaaaaaat attaatattt ttcacgctca tttaaatcct
    12061 ggcttagaaa gtattatcgc aaaaagtcta ggttgtacca aactagtagt aggacaaaat
    12121 catacaggac ttggaatgtt ttatgacgat aaccaaccaa aaaccatact tgatgatttt
    12181 tccaaggact atggcataga agtgatcgtt ttgcctgaat ttgtattttg cgatcaatgt
    12241 cgcatgattg ttagcacaag atcttgccct catggttgtc atcaccattt gcactataat
    12301 tctcagtctt taaaagattt actaagagcg ggtatcattc ctccagcaat tttcatgcgc
    12361 aaggaagtat ctagtgttat tttaacttct ctttttccaa atagattaaa aaatatgcaa
    12421 aaaatttata atgagctttt tccaactgat ggaattttag aatacaaaaa tgatgaagaa
    12481 ttttatcaaa aacttttaga aattcatcaa atgtcttata tggtgtaata aaatgcaaaa
    12541 attattttta actttttttt attcaggttc tgtaaaaaag gcaagtggga cttttggtac
    12601 tatcgctgct ttaatacctg ctttttttat acttaaatat ctcgggatta atactttgtt
    12661 tttactaagc attttaattt ttgttgcaag tattcgtgtt atagatgatt atgaaaaaaa
    12721 aacaggaatt cacgatgaca aacacatagt tatcgatgag gttgctggag tttttcttgc
    12781 ttgtgctatt gcagcaagtg ttgaaaactc gatagtcaat tttattttgg cttttgtttt
    12841 attcagactc tttgacatta caaaaccttc tattattggt aagatagata aaaaagtcaa
    12901 aggcggacta ggtgtaatgc ttgatgatat gttagcagga ttgtttgctg gacttttaag
    12961 tgcggtaatt tatggatttt tacttaaatt taatttagtt ttttgggata taaatttaaa
    13021 agacttattt tgaaattttg cttaaattaa ttaaatttta aattttattc ttatataatt
    13081 tagtctttaa tttcaaaaaa ggaaaatata aatggcaaac cataaatctg ctgaaaaaag
    13141 agcaagacaa actattaaaa aaacagaaag aaatagattc tatagaacaa gacttaaaaa
    13201 tataactaaa gccgtaagag aagctgcagc aaatggagat aaaaatgctg ctaatgaagc
    13261 tttaaaagta gctaataaaa gcattcatgc tatggtaagt cgcggtttca ttaaaaaaca
    13321 aactgcttct cgccgtgtaa gccgcttagc ccttttagta aataaaatcg cataattttc
    13381 tatatagttt ttaatgttag ctagcaaact agatcctttt ttaaaacgct ttgaagagtt
    13441 aaattctctt cttagcagtt ctgatataat caacgatatc agtaaaatga ctacactctc
    13501 taaagaacaa aaaaatttag aacctatcgt tttaaaagct aaagagtatt taaaaacttt
    13561 agacaatata gaagaaaata aagctttgct aaacgatcca gaacttgggg aacttgcgaa
    13621 agaagaacta aaaactttag aagaattaaa accaaagctt gaagaagaga ttaaaatttt
    13681 acttcttcct aaggatccca atgatgaaag aaatattttt cttgaaattc gcgcaggcgc
    13741 aggtggcgat gaggcatctt tatttgtagg agatcttgta aaagcttatg caagatatgc
    13801 tgaaaatcgt ggctataaac ttgagattgt aagttctagt gaaggaagtg taggtggatt
    13861 taaagaaatc atcatgcttg ttaaaggaac aggagcttat tcaagactta aatatgaagg
    13921 tggaacgcac cgtgttcaaa gagttcctca aacagaatcc caaggacgcg tgcatacttc
    13981 tgctatcacc gtggcagtaa tgccagaagt tgatgatata gaaatcgaaa tcaatccaaa
    14041 cgatcttaaa gttgatgtta tgcgatcttc aggacatggt ggacaaagtg taaatactac
    14101 tgattcagct gttcgtatca ctcatatccc tacaggtata gttgtagtca atcaagatgg
    14161 aaaaagccaa cacaaaaata aagaaagtgc gatgaaagtc ctaaaagcaa ggctttatga
    14221 aatgcaagag agtgaaagac tggcaaaaga aagtgaagca agaaaatcac aagtaggaag
    14281 cggagataga agtgaacgca ttcgcactta caattttcca caaaatcgta tcagcgatca
    14341 tagaataaat cttactttat atcgcttaga tgccattatg caagatgggc tttttgatga
    14401 aatcatagaa cctttaatca ctcatcatca agcccaagct ttacaagaac aaaatttata
    14461 agattttata taaattaatg cttatgtagg aatttatgtg gatttccact agcacctaca
    14521 tgtataacat ttccattttc tatatcataa gcttggccaa aaccttttac aaagcgtcct
    14581 tttttaaatt caagctttac tagatgaaaa tcaagcatct tgcgtatagt tttaatgcct
    14641 ccttctcctc cggtttgttt ttcaaactca tcataaattt gatcaaatct ttcacctctc
    14701 tctaaaaagc ttgcatttac tctatagcgc aatcttttgc gaagtatcac agaagcggct
    14761 ttactctcat cctctaaaaa cattatttct atattgtttg gatttacttt gatgttgtta
    14821 aaatgttcgc ttacttcact tatataaata taatttcccc attgtgtgct tacaaaaggt
    14881 gcatacgagc aaacaacttc tccatttgca tttaaagttg ccaaagctac agaattaaaa
    14941 cttagcataa attcatttaa ttctttttct acgccactaa aattttgctc gctctttgca
    15001 ctcatgcaaa gggatattat agcatcttta atcgtgtttt catcggcttt tttaggaaat
    15061 tccactcgta aattttcttt atcattgtaa acaagatcta agccattaaa atcaacactt
    15121 tttagaaaaa catcttgtac ttgctcaata ccaccaaatt ttttacaaag atcgactaaa
    15181 tttgatttat gatgatcatt catatgagaa ataatgcttt caaaattcat ttttatcctt
    15241 tcttgatttt aaaataaaat attaaaaaaa atggtatcaa ttat
//
LOCUS       DAPIWU010000038        15021 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.038, whole genome shotgun sequence.
ACCESSION   DAPIWU010000038 DAPIWU010000000
VERSION     DAPIWU010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15021
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.038"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1538)
                     /locus_tag="RJ285_000893"
     CDS             complement(<1..1538)
                     /locus_tag="RJ285_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7383689.1"
                     /translation="MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNV
                     KKIHLKNGLKHHAFRDISHLINKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYSYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLTFLPNEVLIADDGSKEDTARLIEEYQKNFPCPLKHIWQEDEGFRLSKSRNKTI
                     KNADSEYIIIIDGDMILEKDFIKEHLEFAQRRLFLQGSRVILNEKESEEILNKDDYRI
                     AFNKKDFKSSKNSFLAKMLYSLSKKDEKIFKKTTLIKGIRGCNMSFFKTDFDKLDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHKENSKKMLESNHQIYLDTIK
                     NKKIS"
     gene            complement(1535..2422)
                     /gene="htrB"
                     /locus_tag="RJ285_000894"
     CDS             complement(1535..2422)
                     /gene="htrB"
                     /locus_tag="RJ285_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HDV7383690.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENLLIDALALNRPIIFTTAHYGNWEILSLAYAAKYGAIAIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCAENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(2412..3440)
                     /gene="waaC"
                     /locus_tag="RJ285_000895"
     CDS             complement(2412..3440)
                     /gene="waaC"
                     /locus_tag="RJ285_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HDV7383691.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNVVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQAKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFSLEELMAFTKMMNLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            3507..4301
                     /locus_tag="RJ285_000896"
     CDS             3507..4301
                     /locus_tag="RJ285_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDV7383692.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYEDELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLRSKKSDRSYTEVFAKACESEISKVRS"
     gene            4359..5345
                     /gene="galE"
                     /locus_tag="RJ285_000897"
     CDS             4359..5345
                     /gene="galE"
                     /locus_tag="RJ285_000897"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDV7383693.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLSALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLGLICKSAFDWEKQC"
     gene            5339..7033
                     /gene="pglK"
                     /locus_tag="RJ285_000898"
     CDS             5339..7033
                     /gene="pglK"
                     /locus_tag="RJ285_000898"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HDV7383694.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGLRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLNIIYQNLRQE
                     EENLGEGKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNASNAKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNKVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            7030..8109
                     /gene="pglH"
                     /locus_tag="RJ285_000899"
     CDS             7030..8109
                     /gene="pglH"
                     /locus_tag="RJ285_000899"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HDV7383695.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLANALCKEHEVSIIKFHTGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     LANIGLKTPLIISEHSNEAYLKPKTWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     KLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVGCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISNIKEEWLKLIVEVKNA"
     gene            8102..9031
                     /gene="pglI"
                     /locus_tag="RJ285_000900"
     CDS             8102..9031
                     /gene="pglI"
                     /locus_tag="RJ285_000900"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HDV7383696.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            9019..10116
                     /gene="pglJ"
                     /locus_tag="RJ285_000901"
     CDS             9019..10116
                     /gene="pglJ"
                     /locus_tag="RJ285_000901"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HDV7383697.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSISPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            10120..12261
                     /gene="pglB"
                     /locus_tag="RJ285_000902"
     CDS             10120..12261
                     /gene="pglB"
                     /locus_tag="RJ285_000902"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HDV7383698.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSVIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFSLSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            12271..13401
                     /gene="pglA"
                     /locus_tag="RJ285_000903"
     CDS             12271..13401
                     /gene="pglA"
                     /locus_tag="RJ285_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HDV7383699.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENNIAQRYLKLYDRVIKNV"
     gene            13394..13996
                     /gene="pglC"
                     /locus_tag="RJ285_000904"
     CDS             13394..13996
                     /gene="pglC"
                     /locus_tag="RJ285_000904"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HDV7383700.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTGKFNGKN"
     gene            13983..14570
                     /gene="pglD"
                     /locus_tag="RJ285_000905"
     CDS             13983..14570
                     /gene="pglD"
                     /locus_tag="RJ285_000905"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HDV7383701.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECVFLDDLKGMKFES
                     TLPKYDIFIAIGNNEIRKKIYQKILENGFKIVNLIHKSALISPSASIEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFIGIPAKRM"
     gene            14572..>15021
                     /locus_tag="RJ285_000906"
     CDS             14572..>15021
                     /locus_tag="RJ285_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383702.1"
                     /translation="MHFNNNLVVHYIVNPSPLGWIVINLLTICLICYIFPLKNSLKHK
                     KLFSLKANVNSKNSRIIKYTGIAAFLGGLIGIWYNFEGFYQLLFFFELENENLKTLWS
                     LQVSVSSVITGMLLLLIYVINLAIVCENGIYIVSKFNLFYMYFIKRED"
BASE COUNT         5050 a         1808 c         2614 g         5549 t
ORIGIN      
        1 gaaatttttt tatttttgat ggtatctaaa taaatttgat gattgctttc gagcattttt
       61 ttgctatttt ctttgtgata aatatgataa gcaatagctt taaattttaa gcgtctaaaa
      121 atgcctttat taaataaaaa tctagcaaca aattcactat cttctctacc ccaaccaata
      181 aaattttcat taaaaccatc aagtttatca aaatcagttt taaaaaaact catattgcaa
      241 cccctaatac ctttaataag agtggttttt ttaaagattt tttcatcttt ttttgaaaga
      301 ctgtaaagca ttttagctaa aaaagaattt ttagaacttt taaaatcttt tttattaaaa
      361 gctatgcgat aatcatcttt gtttaaaatt tcttcgcttt ctttttcatt taaaattact
      421 cttgaacctt gtaaaaaaag tcttctttgt gcaaattcta aatgttcttt tatgaaatct
      481 ttttccaaaa tcatatcacc atcaataatt attatatatt cactatcagc gttttttata
      541 gttttgttgc gacttttact aagcctaaac ccttcatctt cttgccaaat gtgttttaaa
      601 gggcaaggaa aatttttttg atattcttca ataagccttg ctgtatcttc tttgctacca
      661 tcatctgcga ttaaaacttc attgggtaaa aaggttagat ttttaacact atcaagcact
      721 aacttaaggc gttctttttg attataggtt gttattatta aagcacaagt ttttggcttt
      781 tgcttttgaa gttcatataa tttcatatat ttaaaaaaag tccctaaggc attacaaacg
      841 ctaattataa aacccttata actatacaaa aagccatttt ttaaaaaata atttctaaaa
      901 aaagtccaaa aagctcttaa atttgctttt aaaacaccac tttttttgtg tatattttgt
      961 tttgcccaaa ggcttgagta gtgctgcatt ttattaatta agtgagaaat atctctaaaa
     1021 gcatgatgct ttaatccatt tttaagatga atttttttaa cattacttgg taaaacaagg
     1081 ctttcgtgta ctaaattatc attaaaacga gtgaaatttt tattaaaaat tcttaaaaca
     1141 taatcaggcc accaaccaca tgcctttatc cattcgcctt tatagagatt tttacgacta
     1201 agtgcgatga tattatcttc ttgaagttct aaatttttaa gctctttaat acactcattt
     1261 tcaagcactt catcagcatc aatgcttaaa atccaatcat tttttgcata acttaaagca
     1321 aggtttttta aagctccaaa acctataaaa gcactgtggt aaatgtgcaa attagcaaaa
     1381 tcttttttaa attcattagc tatatttagg gtattatcac tactttcatt gttaagtaaa
     1441 ataatttcat caaaatcttt taaagaattt aaacattcaa gcaaggtttg ttttgcattt
     1501 tttacaatga taataacact tatttgcttt agattcattt tgcatccttg taaatttcct
     1561 tattataact tgcaaagcgt ctatgaaaaa aaaagtattc ccaaggtctt tttttaatca
     1621 tttcttcgca actttgcgct tgataaagtg tcagttcttc taagcttgca ttttgagaat
     1681 cttttgcttt aaaaaactct atgcaaaatt taccatcttc tttataggca taaacaggga
     1741 tgatcaaagc attgcttctt tgtgcgataa ggcttgctcc catttgataa ttcacttctt
     1801 tgttaaaaaa ttttaatctt acgctttcgt tttctgcgca gtcttgatcg gttaaaattc
     1861 ctaaagttct cccttttttt agagcgctta gcatttgtct tatgccgcct tttttgtcga
     1921 taagttctat gtcaaattgg gtgcgacttt ggcttaaaat ttcatacata atttcacttt
     1981 ttaacttttt ccctactata gcaatcgcac catatttagc cgcataagca aggcttaaaa
     2041 tttcccagtt tccatagtgt gcagttgtga agataatagg acgatttaaa gctagagcgt
     2101 ctataagtaa attttcattg atgaaattta ctttattgag aattttttct ttggtggtgt
     2161 tttgattttg caaacaatca attccaaatt gagcaaaatt ttcataaatt ttcaaagaca
     2221 atttatcgcg ttctttttga gtgtattgag ggaagcagat ttgcaaattt gtatcgatga
     2281 ttttgcgatg ttttttgtta agataaaaag tgattcttgc tacaattaaa gctaaaaaat
     2341 gcaagataca ctcaggcata aaagtaacaa aaaatttcaa aatataataa agactaagat
     2401 atattctatc actatttttc attaagtaag cctttggcaa gtttgaagat atcttcttct
     2461 tctatacgcg tgatacaaaa atcactttta tcgatatgct tggcattttg gattttttta
     2521 cctgcatcaa tgattttatt gatatgagtt tgaaaagcat tgcggtagct tggtgttgca
     2581 ccaaaaatcg taatagatgc tttatttaaa gcaaaagcca aatgtgttgg accactatca
     2641 tttcctatga taagattcat catttttgta aaagccatta gctcttcaag gctgaatttt
     2701 ggtgctaatt ctatatgtgt ttcatcaata ccactaagat ttaaaacctc tttggcaaat
     2761 tcgtattctt ttacatttcc ccaagcgagc caaatttttg cttgttgaaa ttcattgatt
     2821 aaaagtttgc aaagtatagc aagtttggtt ttaggataga ttttattttc tacacttgaa
     2881 cccacgtgta tgagtatgtt tttttcgttt ttgtcgagct tgagtttatt gtttaagagt
     2941 tgttttaaat tttcatctac gctaaaaata tcttgtttaa aggctaaatt tttgacatta
     3001 aaatcagtat ttaacataaa ggaggtaaga cttaagtatc ttacaaatac attttcattg
     3061 taatctaact caagtttttg gttgtagaaa ttatgagcaa aactttcttt aagactattt
     3121 ttatcaaaac caaaattatt tctacttaaa attcgactta caatagcaga ttttataagc
     3181 ccttgtagat ctattactac attatagttg ttttttcttg ctttaagaag aatttttagg
     3241 ctttttaaaa tttttttgtc ttttaagggc agggcataga gtttgtctat taaaggatgg
     3301 tttttaagta tgccttcaaa tttttcatct acaaaccaat gaatttctat atctttttta
     3361 aaatttttga taaattgcaa aaccacggca ctttggataa tatcaccaag tgctgacaaa
     3421 cgaacaattg ctattttcat taaaagccta atattttaaa atttttgcta tgattttagc
     3481 gaaattattt aaaaaaaggt taaaaaatgg caaaaaatga aggttatatt tgtgtttttg
     3541 attgtgagag tgtgccagat gttgagctta tccgcaaaac tttaggtttt gaaggaagtg
     3601 atttggaggt aagtttaaaa gcacttcagt ggcaaaaaga acaaagcggg agtgagtttt
     3661 tgcctttgcc ttatcataaa atcatcagta tttgtgcggt tttaagcgat aattttggaa
     3721 aatttatcaa agtaaataaa attgatgggc aaaatgaaaa agaaatgatt gagaattttt
     3781 tcaattttat agaaaattat gagccaaaat tagtcagttt taatggtaaa aattttgata
     3841 tgcctgttct tgttttaagg gctttaaaat acaatttaaa agcagcaact tatttagata
     3901 ctcaaagtga taaatggaat aattataaaa caagattttc agaattaaaa cattgtgatt
     3961 tattagaatc cttaggatct aatgggcgtg gaataaagct tgatacactt tgctctatgg
     4021 tgggtttgcc aggaaaatac gatgtgcatg gtgatgaggt gatgaaactt ttttatgaag
     4081 atgaacttga aaaaatccac gaatattgtg aaagtgatgt tttaaacacc tatatgcttt
     4141 ttttaaaata tgaacttatt aaagctaatg ttagtgaaga agattatgtt gattttcttt
     4201 cttatatgag agattttttg cgttcaaaaa aatcagatcg ttcttataca gaagtttttg
     4261 caaaagcttg tgagagtgaa atttcaaaag ttcgatctta agtatttaag aaaatatatt
     4321 aaaatttatt tttgacattt tcaaaaaaag gaatgatgat gaaaattctt attagcggtg
     4381 gtgcaggtta tataggttct catactttaa gacaattttt aaaaacagat catgaaattt
     4441 gtgttttaga taatctttct aagggttcta aaatcgcaat agaagatttg caaaaaataa
     4501 gagcttttaa attttttgaa caagatttaa gtgattttca aggcgtaaaa gcattgtttg
     4561 agagagaaaa atttgacgct attgtgcatt ttgcagcgag cattgaagtt tttgaaagta
     4621 tgcaaaatcc tttaaaatat tatatgaaca acactgttaa tacaacaaat ctcatcgaaa
     4681 cttgtttgca aactggagtg aataaattta tattttcttc aacggcggcc acttatggcg
     4741 aaccacaaac tcccgttgtg agcgaaacaa gtcctttagc acctattaat ccttatgggc
     4801 gtagtaagct tatgagtgaa gaagttttgc gtgatgcaag tatggcaaat cctgaattta
     4861 agcattgtat tttaagatat tttaatgttg caggtgcttg catggattat actttaggac
     4921 aacgctatcc aaaagcgact ttgcttataa aagttgcagc tgaatgtgcc gcaggaaaac
     4981 gtgataaact tttcatattt ggcgatgatt atgatacaaa agatggcact tgcataagag
     5041 attttatcca tgtggatgat atttcaagtg cgcatttatc ggctttggat tatttaaaag
     5101 agaatgaaag caatgttttt aatgtaggtt atggacatgg ttttagcgta aaagaagtga
     5161 ttgaagcgat gaaaaaagtt agcggagtgg attttaaagt agaacttgcc ccacgccgtg
     5221 cgggtgatcc tagtgtattg atttctgatg caagtaaaat cagaaatctt acttcttggc
     5281 agcctaaata tgatgattta gggcttattt gtaaatctgc ttttgattgg gaaaaacagt
     5341 gctaaaaaaa ctttttttta ttttaagcaa ggaagataaa aattttttat ttttcttgct
     5401 tgttttttca gtatttgttt cttttataga aacttttgcg atttctttgg taatgccttt
     5461 tatcactttg gctagtgatt tttcttattt tgatcgtaat aaatatttaa tcagcctaaa
     5521 agaatatctt aatatccctg tttttgaaat cattgtttat tttggagtgg ggcttattgt
     5581 tttttatgta tttagagctt tgttaaatgc gtattatttt catcttttgg caagattttc
     5641 taaaggacgt tatcatgcga tcgcttataa ggttttttct aaatttttaa atattaatta
     5701 tgaaaaattt actcaaaaaa atcaatctga aattttaaag tccattacag gggaagttta
     5761 taatctaagc actatgattt catcattttt acttttgatg agtgaaattt ttgtagtgct
     5821 tttgctttat gctttaatgc ttttgattaa ttataaaatc actttatttt taagtatttt
     5881 tatggtgtta aatgctttta ttttagtgaa aattttaagc cctatcatta aaaaagcagg
     5941 actaagacgc gaagaagcga tgaaaaattt cttcgaaatt ttaaatacaa atttaaataa
     6001 ttttaaattt atcaagctta aaaccaaaga agatggagta ttaagtcttt ttaaagcaca
     6061 aagtgaagct ttttctaaag caaatattac caacgaaagc gtagctgcgg tgcctagaat
     6121 ttatcttgaa ggaataggct tttgtgtgct tgtttttatc gtggtatttt tggttttgaa
     6181 aaatgaaagt gatatttcag gtattttatc cacgatttct atttttgttt tagcgcttta
     6241 tcgcttaatg ccaagcgcaa atcgtattat cacaagttat catgatttgc tttattatca
     6301 ttcttctttg aatattattt atcaaaattt aagacaagaa gaagaaaatt tgggcgaggg
     6361 aaaattaagt tttaatcaag agcttaaaat ttgcaatctt agctttggtt atgagggaaa
     6421 aaaatattta tttaaaaatc ttaatttaaa cattaaaaaa ggtgaaaaaa tcgcttttat
     6481 aggggagagt ggttgtggaa aaagtacctt agtagatctt atcataggac ttttaaaacc
     6541 aaaagaaggg caaattttaa ttgatgagca agaattaaat gcaagtaatg caaaaaatta
     6601 tcgccaaaaa ataggctata tcccgcaaaa tatctatctt tttaatgata gcatagctaa
     6661 aaatatcact tttggagatg cggttgatga agaaaaactt aataaggtta tcaaacaagc
     6721 aaatttagag cattttataa aaaatttacc tcaaggagtt cagacaaaag taggcgatgg
     6781 ggggagtaat ttaagcgggg gacaaaaaca acgcatagct atagcaaggg ctttgtattt
     6841 agagcctgaa attttagtgc ttgatgaagc aacttctgcg cttgatactc aaagtgaagc
     6901 aaaaatcatg gatgaaattt ataaaatttc taaagataaa accatgatta ttatcgcaca
     6961 tcgcctttct acgataacgc aatgtgataa ggtttatcgt ttagaacacg gtaagcttaa
     7021 agaggagaaa tgatgaaaat aagctttatt atcgcaactt taaattcagg aggcgctgag
     7081 cgtgttttag taaccttagc taatgcgctt tgcaaagagc atgaagtaag tattattaaa
     7141 tttcatacag gagaatcttt ttataagctt gaaaatgaag ttaaagttac aagtttagaa
     7201 caatttagat ttgacacgct ttatcataaa atcgcaagtc gttttaagaa attttttgcc
     7261 ttaagaaagg ctttaaaaga aagtaaggct gatgttttta tttctttttt ggatacaact
     7321 aatattgctt gtattctagc taatatagga cttaaaactc cactcatcat tagcgagcat
     7381 agtaatgaag cgtatttaaa acctaaaact tggcgttttt taagaagggt aagctatcct
     7441 ttttgtgatg ctttaagtgt gcttggaagc agtgataagg tgtattatga aagatttgta
     7501 aaaagggtta agcttttatt aaacccttgt cattttagcg atgaaattcc ttttgattct
     7561 agttttgaaa aagaaaattt ggttcttttt atagggcgtt tagatcacaa caaaaaccct
     7621 gtaatgtttt taaaagctat agcacatttg gataaaaatt tgcaagaaaa ttataaattt
     7681 gttatagcag gagatggaga gttaaggcaa gaacttgaat acaaggtaaa atctttagga
     7741 ataaaagttg attttttagg acgcgttgaa aatgtcaagg ctctttatga aaaagcaaaa
     7801 gtgctttgcc tttgttcttt tgtagagggt ttgccaacgg ttttaattga aagtttgtat
     7861 tttgaggttt gtagaatttc aagttcttat tataatggtg ctaaggattt aatcaaagat
     7921 aatcatgatg ggcttttggt aggttgtgat gatgaaatag cacttgctaa aaaacttgaa
     7981 cttgttttaa atgatgaaaa ttttagaaaa gaacttgtaa ataatgccaa acaaaggtgt
     8041 aaagactttg aaatttctaa catcaaagaa gaatggctta agcttatagt cgaggttaaa
     8101 aatgcctaaa ctttctgtta tagtgccaac ttttaatcgt caagttttgt tagaaaaggc
     8161 tattaaaagc atacaaaatc aagattttaa agatttagaa atcattgtaa gcgatgataa
     8221 ttctagtgat gatactaaaa gtgtggtgca aaatttacaa aaagatgatg atcgcattaa
     8281 gtatttttta aatcaaaatt acaaacaagg cccaaatggc aataaaaaca atggcttaga
     8341 tcaagcaagt ggcgagtttg taactttttt agatgatgat gatgagcttt tatctggggc
     8401 tttaagtacc ttgatgcaaa aagcaaatga gggttatgct catgtttttg gaaattgttt
     8461 gatagaaaaa gaaggaaatt taagcaagga atttagcggt aagggcttgg aaaaagatag
     8521 tgaaatttct aaaaaagatt ttttaatggc taaatttagc ggagagtttt tttctgtttt
     8581 taaaaaatct ctacttgaaa acaagcgttt taatgaagaa ttttatggca atgaagccac
     8641 gctttgggta aatttataca aggaaaaaag tttttatatc cataaggctt ttaggattta
     8701 taggattttt aggcaagata gcgtgacttt aggggcgagt aaaaatgctc atagggtgta
     8761 tttgggatat ttagagcttg ctaaaatttt agaaaatgaa cttagaatga gtaaggataa
     8821 agattataaa aaaacttgtg cgagttatta taaaatggca gcttattatg caaaacttgc
     8881 aaaaaattat aaagctcttt ataagtgttt gtttaaaagc ctgagtataa aaatcaacgc
     8941 tcctgctttg atattactca ttttaagtat aattccaaat aatatgattg aaaaattatc
     9001 aaaaattcgg gtggctttat gcaaaaatta ggcattttta tttattcttt aggaagtggt
     9061 ggtgctgaaa gagttgtggc gactttattg cctattttaa gtttgaaatt tgaagtgcat
     9121 ttgattttaa tgaatgataa aatttcttat gaaattccag agtgtcaaat tcatttttta
     9181 gaatgttcaa aacctagtga aaatcctatt ttgaaatttt taaaactacc ttttttggct
     9241 ttaaaatata aaaaactttg cagaaattta ggtattgata cagaatttgt ttttttaaat
     9301 cgacctaatt atatagcttt aatggcaaga atgtttggaa acaaaactcg ccttgtgatc
     9361 aatgaatgca ctacgccaag tgtgatgtat atgaaaaata attttaattc tttggtaaat
     9421 aaatttttaa tttctttgct ttacccaaaa gctgatttaa tcttgcctaa ttctaaggga
     9481 aatttagaag atttagtgca aaattttagt ataagtccaa aaaaatgtga aattttatac
     9541 aatgccatcg atttagaaaa catagggcaa aaagcccttg aagacatagc tttaaaagat
     9601 aaatttattt taagtgtagg caggcttgat aaaggtaaaa atcatgcttt attaattcgt
     9661 gcttatgcga gattgaaaac agatttaaag cttgtgattt taggtgaagg tgtgcttaag
     9721 gatgagcttt tagctttgat taaagaatta aatttggaag aaaaggtttt gcttttagga
     9781 tttgataata atccttataa atacatggct aaatgcgaat tttttgcttt tgcttctgtg
     9841 tttgaaggtt tttcaaatgt tttaatcgaa agtttggctt gttcttgtgc ggtggtttgc
     9901 actgatcata aaagtggtgc aagagagctt tttggcgatg atgaatttgg acttttagta
     9961 gaagtagata atgaaaactc tatgtttcag ggtttaaaaa ctatgcttga agacgataaa
    10021 ttaagaaaag cgtataaaaa caaagctaaa actagggcta aagcctttga taaagtaaaa
    10081 attgcacgcg atgctttgaa atatttatta ggataaaaga tgttgaaaaa agagtattta
    10141 aaaaaccctt atttagtttt gtttgcgatg attgtattag cttatgtttt tagtgtattt
    10201 tgcaggtttt attgggtttg gtgggcaagt gagtttaacg agtatttttt caataatcaa
    10261 ttaatgatca tttcaaacga tggctatgct tttgctgagg gcgcaagaga tatgatagca
    10321 ggttttcatc agcctaatga tttgagttat tatggatctt ctttatctac tcttacttat
    10381 tggctttata aaatcacacc tttttctttt gaaagtatca ttttatatat gagtactttt
    10441 ttatcttctt tggtggtgat tcctattatt ttactagcta atgaatacaa acgcccttta
    10501 atgggctttg tagctgctct tttagcaagt gtagcaaaca gttattataa tcgcactatg
    10561 agtgggtatt atgatacgga tatgctggta attgttttac ctatgtttat tttatttttt
    10621 atggtaagaa tgattttaaa aaaagacttt ttttcattga ttgccttgcc attatttata
    10681 ggaatttatc tttggtggta tccttcaagt tatactttaa atgtagcttt aattggactt
    10741 tttttaattt atacacttat ttttcataga aaagaaaaga ttttttatat agctgtgatt
    10801 ttgtcttctc ttactctttc aaatatagca tggttttatc aaagtgtcat tatagtaata
    10861 ctttttgctt tatttgcttt agagcaaaaa cgcttaaatt ttatgattat aggaatttta
    10921 ggtagtgcaa ctttgatatt tttgatttta agcggtgggg ttgatcccat actttatcag
    10981 cttaaatttt atatttttag aagtgatgaa agtgcgaatt taacacaggg ctttatgtat
    11041 tttaatgtta atcaaaccat acaagaagtt gaaaatgtag attttagcga atttatgcga
    11101 agaattagtg gtagtgaaat tgttttcttg ttttctttgt ttggttttgt atggcttttg
    11161 agaaaacata aaagtatgat tatggcttta cctatattgg tgcttgggtt tttagcctta
    11221 aaaggaggac ttagatttac catttattct gtacctgtaa tggctttagg atttggtttt
    11281 ttattgagcg agtttaaggc tatattggtt aaaaaatata gccaattaac ttcaaatgtt
    11341 tgtattgttt ttgcaactat tttgactttg gctccagtat ttatccatat ttacaactat
    11401 aaagcgccaa cagttttttc tcaaaatgaa gcatcattat taaatcaatt aaaaaatata
    11461 gccaatagag aagattatgt ggtaacttgg tgggattatg gttatcctgt gcgttattat
    11521 agcgatgtga aaactttagt agatggtgga aagcatttag gtaaggataa ttttttccct
    11581 tctttttctt taagtaaaga tgaacaagct gcagctaata tggcaagact tagtgtagaa
    11641 tatacagaaa aaagctttta tgctccgcaa aatgatattt taaaatcaga cattttacaa
    11701 gccatgatga aagattataa tcaaagcaat gtggatttat ttctagcttc attatcaaaa
    11761 cctgatttta aaatcgatac accaaaaact cgtgatattt atctttatat gcccgctaga
    11821 atgtctttga ttttttctac ggtggctagt ttttctttta ttaatttaga tacaggagtt
    11881 ttggataaac cttttacctt tagcacagct tatccacttg atgttaaaaa tggagaaatt
    11941 tatcttagca acggagtggt tttaagcgat gattttagaa gttttaaaat aggcgataat
    12001 gtggtttctg taaatagtat cgtagagatt aattctatta aacaaggtga atacaaaatc
    12061 actccaattg atgataaggc tcagttttat attttttatt taaaggatag tgctattcct
    12121 tacgcacaat ttattttaat ggataaaacc atgtttaata gtgcttatgt gcaaatgttt
    12181 tttttgggaa attatgataa gaatttattt gacttggtga ttaattctag agatgctaaa
    12241 gtttttaaac ttaaaattta agggttgaaa atgagaatag gatttttatc acatgcagga
    12301 gcgagtattt atcattttag aatgcctatt ataaaagcgt taaaagatag aaaagacgaa
    12361 gtttttgtta tagtgccgca agatgaatac acgcaaaaac ttagagatct tggcttaaaa
    12421 gtaattgttt atgagttttc aagagctagt ttaaatcctt ttgtggtttt aaagaatttt
    12481 ttttatcttg ctaaggtttt gaaaaattta aatcttgatt ttattcaaag tgcggcacac
    12541 aaaagcaata cttttggaat tttagcagca aaatgggcaa aaattcctta tcgttttgcc
    12601 ttagtagaag gcttgggatc tttttatata gatcaaggtt ttaaggcaaa tttagtgcgt
    12661 tttgttatta atagtcttta taaattaagt tttaaatttg cacaccaatt tatttttgtc
    12721 aatgaaagta atgctgagtt tatgcggaat ttaggactta aagaaaataa aatttgcgtg
    12781 ataaaatctg tagggatcaa tttaaaaaaa ttttttccta tttatgtaga atcggaaaaa
    12841 aaagagcttt tttggaaaaa tttaaacata gataaaaaac ccattgtact tatgatagca
    12901 agagctttat ggcataaagg tgtaaaagaa ttttatgaaa gtgctactat gctaaaagac
    12961 aaagcaaatt ttgttttagt tggtggaaga gatgaaaatc cttcttgtgc gagtttggag
    13021 tttttaaact ctggcgcagt gcattatttg ggtgctagaa gtgatatcgt agaacttttg
    13081 caaaattgtg atatttttgt tttgccaagc tataaagaag gctttcctgt aagtgttttg
    13141 gaggcaaaag cttgtggtaa ggctatagtg gtgagcgatt gtgaaggttg tgtagaggct
    13201 atttctaatg cttatgatgg actttgggca aaaacaaaaa atgctaagga tttaagcgaa
    13261 aaaatttcac ttttattaga agatgaaaaa ttaagattaa atttagctaa aaatgccgcc
    13321 caagatgctt tacaatacga tgaaaataat atcgcacagc gttatttaaa actttatgat
    13381 agggtaatta agaatgtatg aaaaagtttt taaaagaatt tttgatttta ttttagcttt
    13441 agtactttta gtgctttttt ctccggtgat tttaatcact gctttacttt taaaaatcac
    13501 tcaaggaagt gtgattttta cccaaaatcg tcccgggtta gatgaaaaaa tttttaaaat
    13561 ttataaattt aaaaccatga gcgatgaaag agatgaaaag ggtgagttat taagtgatga
    13621 attgcgtttg aaagcttttg gaaaaatcgt tagaagctta agtttggatg agcttttgca
    13681 actttttaat gttttaaaag gggatatgag ttttgtggga cctaggcctc ttttggttga
    13741 gtatttgcct ctttacaata aagagcaaaa attgcgtcat aaagtgcgtc caggtataac
    13801 aggatgggcg caggtaaatg gtagaaatgc tatttcttgg cagaaaaaat ttgaacttga
    13861 tgtgtattat gtgaaaaata tttctttttt acttgattta aaaatcatgt ttttaacagc
    13921 cttaaaggtt ttaaaacgaa gtggggtaag caaagaagga catgttacaa cggggaaatt
    13981 taatggcaag aactgaaaaa atttatattt atggtgctag tggtcatggg cttgtttgtg
    14041 aagatgtggc taaaaatatg ggttataaag aatgtgtttt tttagatgat cttaaaggaa
    14101 tgaaatttga aagcaccttg ccaaaatatg atatttttat agccatagga aacaatgaaa
    14161 ttcgaaaaaa gatttatcaa aaaattttag aaaatggctt taaaatcgtt aatcttatcc
    14221 ataaaagcgc acttataagt cctagtgcaa gtatagaaga aaatgcagga attttaatca
    14281 tgccttacgt ggtaattaat gctaaagcca aaatagaaaa aggcgtgatt ttgaatactt
    14341 caagtgtgat tgaacatgaa tgtgtgatag gggaattttc tcatgtgagt gtaggggcta
    14401 aatgcgcagg taatgtaaaa attggtaaaa attgtttttt agggattaat tcttgtgttt
    14461 tgcctaattt aagcttagca gatgatagta ttttaggtgg tggagcaact ttagttaaaa
    14521 atcaagatga aaaaggtgtt tttataggaa tacctgcaaa aaggatgtaa attgcatttt
    14581 aataacaatc ttgttgttca ctatatagta aatccttcgc ctttggggtg gattgtcatt
    14641 aatttactaa ccatatgtct aatatgctac atatttcctt tgaaaaattc tttaaaacac
    14701 aaaaaacttt ttagtcttaa agcaaatgta aattctaaaa atagtaggat tataaaatat
    14761 acaggtattg ctgctttttt gggtggatta ataggaattt ggtataattt tgaaggtttt
    14821 tatcaacttc tttttttctt tgaattagaa aatgaaaatt taaaaacact ttggagtttg
    14881 caagtatcag tttcttctgt gataacaggt atgttattat tgttgatata tgttataaat
    14941 ttagcaatag tttgtgaaaa tggaatttat atagttagta aatttaatct tttttatatg
    15001 tattttataa aacgagaaga t
//
LOCUS       DAPIWU010000039        14550 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.039, whole genome shotgun sequence.
ACCESSION   DAPIWU010000039 DAPIWU010000000
VERSION     DAPIWU010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14550
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.039"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..800)
                     /gene="wecB"
                     /locus_tag="RJ285_000907"
     CDS             complement(<1..800)
                     /gene="wecB"
                     /locus_tag="RJ285_000907"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDV7383703.1"
                     /translation="MVKKILIVFGTRPEAIKMAPLVKIMENRNDVNFRVCVTGQHRQM
                     LDQILNIFDIKPDYDLNIMQENQDLYDITLKILCGMKNVLNDFKPNIVLVHGDTTTAS
                     VTALAAFYQKIKIAHVEAGLRTYNICNPWPEEANRQIIGVLANIHFTPTVKSAENLIK
                     EGKNKEGIFITGNTVIDALFYMTEKIKNDKTFKIKVLSSIGNEYKINDNKKFILVTGH
                     RRENFGEGFLQICEALKIIAINNPDIDIVYPVHLNPNVQKPVKMLLLN"
     gene            complement(852..1799)
                     /locus_tag="RJ285_000908"
     CDS             complement(852..1799)
                     /locus_tag="RJ285_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDV7383704.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKASDKPRFDFKAKEIMSTNPKVVDA
                     DAMASKAEEIMLKYKIKEIVVSKENKVVGIIQFYAIGEI"
     gene            complement(1809..3467)
                     /locus_tag="RJ285_000909"
     CDS             complement(1809..3467)
                     /locus_tag="RJ285_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HDV7383705.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKMAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(3469..4587)
                     /locus_tag="RJ285_000910"
     CDS             complement(3469..4587)
                     /locus_tag="RJ285_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDV7383706.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIIWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTNGILSLLGSTSTASEDLNYLKGYIESSDMLKILDGKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(4587..5249)
                     /locus_tag="RJ285_000911"
     CDS             complement(4587..5249)
                     /locus_tag="RJ285_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7383707.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAEIGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KA"
     gene            complement(5246..6028)
                     /gene="kpsM"
                     /locus_tag="RJ285_000912"
     CDS             complement(5246..6028)
                     /gene="kpsM"
                     /locus_tag="RJ285_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HDV7383708.1"
                     /translation="MLNVIHALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQVMPEGISIFMFLISGVMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            complement(6100..6507)
                     /locus_tag="RJ285_000913"
     CDS             complement(6100..6507)
                     /locus_tag="RJ285_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383709.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            6582..7145
                     /gene="ciaI"
                     /locus_tag="RJ285_000914"
     CDS             6582..7145
                     /gene="ciaI"
                     /locus_tag="RJ285_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HDV7383710.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYANNEEGKTL
                     NLKHQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            7182..7871
                     /gene="dut"
                     /locus_tag="RJ285_000915"
     CDS             7182..7871
                     /gene="dut"
                     /locus_tag="RJ285_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HDV7383711.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFTWKHWKNISSPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYSILNDIELIIHKCSGFGFNLEELLSIYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            7873..8586
                     /locus_tag="RJ285_000916"
     CDS             7873..8586
                     /locus_tag="RJ285_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HDV7383712.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLGYQRILKLKAKA"
     gene            complement(8569..9534)
                     /gene="tilS"
                     /locus_tag="RJ285_000917"
     CDS             complement(8569..9534)
                     /gene="tilS"
                     /locus_tag="RJ285_000917"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDV7383713.1"
                     /translation="MQIKNEILSLLKRGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKQAPKFQSNFEKKARDFRYDFFEKICLEQ
                     DYDYLILAHHLNDQFEWFLMQLSRGAGLAEILGMQEYEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSKFHQGLKRSFSYLGEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKEFLKGDCVLGGKIALVYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(9524..10843)
                     /gene="rimO"
                     /locus_tag="RJ285_000918"
     CDS             complement(9524..10843)
                     /gene="rimO"
                     /locus_tag="RJ285_000918"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDV7383714.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPNKADVLIVNT
                     CGFIDSAKKESINVILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIVAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYFYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCAFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKGFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            10916..12013
                     /gene="prfB"
                     /locus_tag="RJ285_000919"
     CDS             10916..12013
                     /gene="prfB"
                     /locus_tag="RJ285_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDV7383715.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASMLYRMYLRFCEREGF
                     KVETLDFQEGEETGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(12174..12488)
                     /locus_tag="RJ285_000920"
     CDS             complement(12174..12488)
                     /locus_tag="RJ285_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383716.1"
                     /translation="MKKILTSALALGAMTLIVDCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNYKLYDYTSVRTISDINNPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKTI
                     KL"
     gene            complement(12610..13728)
                     /gene="truD"
                     /locus_tag="RJ285_000921"
     CDS             complement(12610..13728)
                     /gene="truD"
                     /locus_tag="RJ285_000921"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDV7383717.1"
                     /translation="MNLAEENTIFKPLYSLKHSPINAYFSKNSDDFVVREKPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHSKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(13697..14518)
                     /locus_tag="RJ285_000922"
     CDS             complement(13697..14518)
                     /locus_tag="RJ285_000922"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDV7383718.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEVAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIETIAKKHGVKLNIFGKAVKGKYEFSGREHHF"
BASE COUNT         5013 a         2590 c         1848 g         5099 t
ORIGIN      
        1 atatttaaaa gaagcatttt tacaggtttt tgcacattag gattcaagtg aacaggataa
       61 actatatcga tatctggatt attgatcgca attattttta atgcttcgca aatttgcaaa
      121 aatccctcac caaaattttc tctacggtgt ccagtcacta aaataaattt tttattatca
      181 tttattttat attcattacc aatagaagat aaaactttta ttttaaaagt tttatcattt
      241 ttaatttttt ccgtcatata aaacaatgca tcaataactg tattgccagt aataaaaata
      301 ccctctttat tttttccttc ttttataaga ttttcagcac ttttaaccgt tggggtaaaa
      361 tgaatatttg ccaaaacacc tataatctgt ctatttgcct cctcaggcca aggattacaa
      421 atattataag ttctaagtcc tgcttcaaca tgtgctattt ttattttttg ataaaaagca
      481 gccaacgctg tgacactcgc cgttgtagta tcaccatgta ctaaaacaat atttggttta
      541 aaatcattta atacattttt catgccacaa aggattttta aagtaatatc atataaatcc
      601 tgattttctt gcataatgtt taaatcataa tcgggtttaa tatcaaaaat atttagaatt
      661 tgatctaaca tttgtctatg ttgcccagtt acacaaactc taaaattaac atcatttcta
      721 ttttccatta ttttaactag cggagccatt tttatagctt ccggtcttgt gccaaatact
      781 attaaaattt ttttcaccaa ataaaaactc cttttaattt ttcactaatt ataatatata
      841 aaaaatgcaa attaaatctc ccctatagca taaaattgga taatacctac aaccttattt
      901 tccttagata caacaatttc tttaatttta tattttagca taatttcttc tgctttactt
      961 gccatagcat cagcatcaac tactttagga tttgtactca tgatttcttt agctttaaaa
     1021 tcaaatcttg gtttatcact tgcttttaaa gcacgacgca aatccccatc agtgataata
     1081 ccaaccaatt tttcattttc aagtactaca caaagtccta gttttccact agtcatcaca
     1141 tcaacaagat cgttaaattc ggtatcagga tgaactatag gaaggttgct tgaaaccata
     1201 agatctttta ccttggttaa aagcttacga cccaaacttc cccctggatg aaaaagggca
     1261 aaatcatcag gcttgaaatt tcttaccttc atcaaagcag cagctaaagc atcccccata
     1321 accaaagttg cggttgtcga agacatagga gcaagctgca aaggacaagc ttccttttcc
     1381 acagctatat ttaaaaatat atcgctttgc tttacaaggg tggaattttt tttaccacac
     1441 attactataa gtggaatttt acgctttttt atagctggaa tgatttttaa aatttcttca
     1501 gtttcccctg aatttgaaat agcaattaaa acatcttcag gagttagcat tccaagatct
     1561 ccatgcaaag cctctcctgg atggatgaaa aagcttggcg ttcctgtact tgctaaagta
     1621 gctgctatct tagcacctat atgacccgat ttacccattc cactgactat gcaacgccct
     1681 ttggtattta gcatcaaatt cacagcttga ttaaaatttt catctaaatt tttagccaaa
     1741 tccaaaatag cttgcgcttc tttttcaaag acttctttgg ctatttcaag agtattcatt
     1801 tttaaacctt aaagattaag cacaacattg gttgcaatag caatttgata aagaatttga
     1861 gttaacattg aaaaaatttg caaattctca ctatctactt ttggcaatac taacacagaa
     1921 tcgcctggtt tcatatctat accactatga tatttttcag cttttccatt gcttcgtatc
     1981 accaaaactt ttgaagtatc cgctctttct ccataacctc ctgcaagatt gatataatat
     2041 cttaaatctt tgcccttatc atacacaaaa gctccaggta aagaaacctc accttgaact
     2101 atgatgagat tattcttact tggtacatta atagtatcac catcttctaa aataaccgaa
     2161 ttataagact ttggattatc aatgacaatt tgacccttag gctctacttg cttagctctt
     2221 tggataaatt ctaaaatcgt ttttgcttgt tgagctctta tagctgcacc ttgagctgta
     2281 acagaaccac tagttaaagc tagagtttca agctctttaa gctgagcatt gataagttct
     2341 ttttgagttc tagctacact ttttctaaac acttgtaaag cttgcatgtt tgattgtgga
     2401 ttagctttaa ttaatttaga aatatcttct aaagtcgttc ctttacccac aactaaagtt
     2461 tttaaaccat tatgctcgcc atttacactt atagttatat tttcagaaac atactcaggg
     2521 tgaaattcta cctcatctcc cgttctaagt aaaacttttg aaaattgcat tttattataa
     2581 gcactgacat caagtttatg atcttcacca taacttttta cgatagcatt agtcacgata
     2641 ggtttagcac ctgatactct agctaagtca gctaaagttt taatatcatt tgaaagttca
     2701 aaacgaaaag gtctttgcac atcaccgtta acaaaagcgt aattttgaac atttcctact
     2761 aaaataacat ctccacttct aaaaggaaaa agatccattt gcccctttag taaaaaatca
     2821 tataaatcaa tattttttat cacgctgtta ttacgcaaaa tttgaatatc tctaaaactt
     2881 ccatattcta aatttatacc ccctgcttta tcaagatact ggatcactga atccgaacta
     2941 agtccttgat aaagtcctgg agcattaacg cttcctgtta caaaaacact gacattttga
     3001 taagcattca tatctgcata aacaaaaaca ttgcttttat agattttatt aacacgtgct
     3061 tttataacac ttacaagggc gctatttttc acacctagta aatttacagc tcctacttta
     3121 gggataaaaa tatttccttg agaatccacc actaaaactt gcgaaaactc aacagctccc
     3181 caaattttaa gactgatttg atcaccaact gccatcttat aatctgggtt ataaactctt
     3241 tgattgtaat ttttaaaatt tccattaaaa agatgagcgc caaatactaa aatttgatga
     3301 atttttgtaa gattattttc tttatttgct atatcataat ttgagcttaa attttgatct
     3361 atgctagttg tagtagaacc ttgatcctct gctgaaatga tttgtgaaac atccacagct
     3421 ccaaaacata aaatacaact aaaaagtaaa attaatattt ttttcatttt aatacttatg
     3481 ctcctctatt atcattttaa taaatttaac aatcccaaaa atcaaagata atacaataaa
     3541 tgctgttaaa atatcataaa ttctttcagg atattttgcg ctttctggaa tatctggact
     3601 ttgaatgatg acaagttgtt ttatttttct taatgcttct attctagcac tttcataagc
     3661 ttttaaagct gcttcataag ctttttgcgc aaaagtagct tctatagtta gatcttgaaa
     3721 tttagcagcc aaatcattaa gcttttgaga agaattgtta gctgaaattt tagatttttc
     3781 ccttaaaagc tgttttttaa tcgcttcaat ttctgcttta agtgctacta cttcaggtgc
     3841 tgcatcattc atatagcttt gtaaagttaa aagtttagct tctttttgag ctaaattagt
     3901 ctcaatttgc gcaaccaaac ttgctttagc ttcagcttgt ttcaagggat caaaaacccc
     3961 atatttattt tgaaaagcaa tcaaatcatt ttgtgctttt tgatatcgtt ctttgtattt
     4021 ttgtacttca ttttcagcaa aagccatttg ttctctagct gctttatgag agatttcgtt
     4081 gataaacttt tcactttctt gcataatagt ttgagcaatc aaatgagctg atttaggtgt
     4141 aaaaccttct acttctacct gcaaaagctt agtagtttca tccgtatgca ccttaactct
     4201 tgcttggtaa tatttaagat aagattctat cgaacttgaa tcccaaattt taaaaggcaa
     4261 atctatatgt tgttcttgat aaagactttt aagtttaatt ttcccatcta aaatttttaa
     4321 catatcactt gattctatat aaccttttag ataatttaaa tcttcgcttg ctgtagaagt
     4381 actaccaagc aaagacaaaa ttccatttgt ttgagcactt tctccacttg ttgatctaac
     4441 atctaaaatc atcgtgctta catatcttgg cgctgcaatc aatgtataat aaatcacaac
     4501 aaaaatcatt ataaaccaaa taattttaaa agaatcaaat atacttaaat ctttgatttt
     4561 ttctaataaa gttttatttt cttccattaa gcttttcctt gatatacagc tattccttca
     4621 tctacatcat cataaaccgt aatttgtcca tttttcatat aaattatttt atcacaccat
     4681 tctttaattt cagctacatt atgagatacc ataatcacct ttgatttgct taatctttct
     4741 ctatataatt tcacgctttt ttccctaaaa gcaggatctc caacagctcc agcctcatcg
     4801 atcaaataat aatcaaaatc aaaagccata ctaagtccaa aagctatcct agcactcatt
     4861 cccgaagaat aagtcttcat aggctcatca aaaaattttc ctatttcagc aaaatcttcc
     4921 acaaatttta ctttttcttg aagttcttta cccttgtatc catacaccct agctacaaat
     4981 ttagcattat ctctggcagt taaagaacct tgaaaagctc catttaaacc caaaggccaa
     5041 gataattttt tattagtaat tatcttgcca ctatcaggaa gctctgctcc gcttaaaagt
     5101 ctcatgagag tggacttgcc tgcgccatta tatcccatta aacctatgct acaattttca
     5161 ggaaattcaa aagtaaaatt tttaaaaaca taatgccttc caccactaaa taaaggataa
     5221 gatttagtta gattaattag cttgatcatt ctttttttgc cgccgttaga gcttgtctat
     5281 tatagtagta aataaaaagc cctataaata aaacaagtaa aatccaaaat atagcataaa
     5341 aataactata ttcatcttgc aaaggataat tttcaaaaaa attaaatctt aaaagctcca
     5401 ttatgtgaag caaaggattg taataaaata tatcaagtaa aggacgagga gttaaccagg
     5461 tgggaaatat aatcccagaa ctccaataaa atactatact aaaataagct aataaagttc
     5521 ttaaaggttc tacaaagtgc caaacaatag caaaacaaat ccctaaagca aaagctgagc
     5581 atatgagtaa aaaaatacaa aataaaactc caagtaaatg aacaggaaat acatcgagtc
     5641 taaagaacca ccctgcaaaa aaaagcacag tgataaaaat cacaaaataa atacaaaatt
     5701 caagcaaagt tctagcaata aatacatgta taggttttac aggtttatag gcaaacaaag
     5761 ataaatttgc tcctattcca ttcataagct gagttactat acttctaaac ataaaaaaag
     5821 gcataacgcc tgaaatcaaa aacataaaaa tagaaattcc ttcaggcata acttgatgat
     5881 gatattccct aataacagtt cctataatag tcaccaaaag cacaacactc ataggctctc
     5941 caactaccca tatatatcca agatacctat tttttccaaa tctagttttt aactctctaa
     6001 aaaataaagc gtgaattaca tttaacattt attttctata cctaacaatt tacataaacc
     6061 ataatcataa ctcatttttt taaacaaaat cataaaaatt tattttttac aaaattcaag
     6121 ctttttacta agtcctaaag cattgttagt aaatttaagc caaaaaagct ctaaggcata
     6181 aatttttgca cttttatcaa gtttagcaaa gggaaattta gaaaaataaa ttttcatttg
     6241 ctccttgctt gccattttaa actcggcctt agcttgcaca ccttttaaaa aggctatttt
     6301 actttctttg gctatattaa gtgctatact tgaattttca ctggctaatc ttatatgctt
     6361 agtatcttca tgagaagcga taataaaagc taaattcttc tcatcaaaag cataaaaagc
     6421 actagctgta taaacacctt tttcatcaat catagcccaa gataaaagct gctcattttt
     6481 tataaattct aaaattcttt catccatatt gtaaaaatta tactaaaata tttttaaaaa
     6541 taaccgattt ttaatttaaa ctataaatat aaggggaaga aatgcaaatt gatgctagca
     6601 aaaaccaaag tttttcgatg gattatacaa caaaaagtgg caaacattta gccttatcta
     6661 tgtatgacaa tcaaagcgtg agttatgcaa ataatgaaga aggtaaaact cttaatctta
     6721 agcatcagta tggctttagc tttacttttg aaggctctaa gctcacacaa aatgatcttg
     6781 atgagattaa aaatgctatg aaagaagttg aacctatgat caaagacttt ttagcaaatt
     6841 ctaaagtcgg agagttaaag ccaaaagaaa ttatagaatc agctatgcaa atggcaaatg
     6901 ttctaccaac accaaatgat gaaaaccatc aaaatgctat tatgaataat tttacaaata
     6961 aactcagtga tttactaaaa caaaatcaaa cagatgataa agatatcaat gcttccatgc
     7021 ttgaagatag caaaaaactt cttgatgaag ttttagaaca aatgaaaaaa caacttgaaa
     7081 aacagcaaga aaaagccaag gaaaatcaag ataagacaga tgatagttta aatctttacg
     7141 cttaaatcat ataatattaa aaattatcaa ggagttttta aatgacaaat atcgaaattt
     7201 tagaaaatat gctcaaactc caacaaaaac tcaacgatga aacaaacggc ttaaattggg
     7261 aaaatggcta caccaaagaa ggaaaactga tcagttggag acgctgtatt tatatggaat
     7321 gtgcagaact tatagactct tttacatgga aacattggaa aaatatttca agtccaacaa
     7381 attgggaaaa tgtgcgtata gagattgtcg atatttggca ttttatttta agtcttttac
     7441 ttgaagaata tcgcgataaa aacaataaag atttcaaagc tatagccaca gaagttaatg
     7501 ctgtaagcgt gtttcaagat ttttgcaaag aagaagaata ccctaatgag ggtgatattt
     7561 atagcatttt aaatgatata gagcttatta tccataaatg cagtggtttt ggatttaatc
     7621 ttgaagaatt actttcaata tattttactt tagctattaa atgtgggcta aatcttgaaa
     7681 ttctttataa gacctacata ggtaaaaatg ttttaaatat ttttagacaa aacaatggtt
     7741 acaaagatgg tagctataaa aaaacttgga atggcaaaga agacaatgaa gttttagctc
     7801 aaattttaga acaagagctt gattttgata ctatttataa aaaactagaa gaatgctaca
     7861 aaaaggcata atttggatat tttaaaactt gcaatcaaag attttttaag tcttaaattt
     7921 ttaaaatttg ccttaattcc tttgattttt agccttatac tgatgctttt tttaggagta
     7981 cttggctttt cggccttgct tgattatttt aattctttat ttagcgttgg agaggattcg
     8041 ttttgggcgt ggttttatgc ccttcatttt gtacaaattt taatcaccat cataagtttt
     8101 ttattttcag gttttattgt tgtttttgct tcggtttttt tagccctttt tatcacttct
     8161 tttcttactc cttttatcgc taaagaaatc aaccaaaaat attaccatta tgataataca
     8221 aacgaagttt caaccctaaa aactatcttt gaaattttta aaatatttat aaaatttata
     8281 gggattttat tgctttgcac cttggcttta tttttacctt ttatcaatat ttttgtatat
     8341 tatcttgctt tttattatct ctttcacaaa cttttaatga ttgatgttac aagcacgatt
     8401 ttagacaaag aaagttttaa aaattttcat tctgattttt cgcctttaga gtttaaattt
     8461 agcactcttt gtttttatct actctcatca gtgccacttt taggactttt tttgcaagta
     8521 ttttttgtga tttttctcac acatttaggc tatcaaagaa ttttaaaact aaaagctaag
     8581 gcttgaaata tcgattttgt gattatataa ataagctctt aaaagtcttg gaattttagc
     8641 tattctacac tcttctttaa aatttttagg taatttttga caagtttcat attcaaaaac
     8701 aatagcttgt tcgtttttat atacaagtgc tattttacca cctaaaacac aatcaccctt
     8761 taaaaactct tttctttgcg ctgtgcttaa aagtaaacct ttcattttca ctgctctagc
     8821 aatcaaactt tcatttttag gacaaataag aagtccttga atttctttga tattttcaaa
     8881 atcataaagt tttttcctat cttcaccaag ataagaaaag cttcttttta aaccctgatg
     8941 aaatttactc acaaaggcat tagagaaatt ttttcttata taatttctaa aatatttttc
     9001 attttcatta ctttcatcat ggaaataaaa aatatctttt tcttttaaaa aagatgaaat
     9061 ttcatcttta cttataaaga gtaaaggacg taaaagtgta taatttgatc gtttttcata
     9121 ctcttgcata cctaaaattt cagccaaacc tgcgccccgt gaaagttgca tcaaaaacca
     9181 ttcaaactga tcatttaaat gatgggctaa gataagataa tcataatctt gctcaagaca
     9241 aattttttca aaaaaatcat agcgaaaatc tctggctttt ttttcaaaat tactttgaaa
     9301 tttaggagcc tgttttatga aaattttttt atgaaatttc aaagcaagtt ctttggcttt
     9361 taactcttct aaatcactat tttttctagt tttataattt atcatcacaa gatcaaagtc
     9421 gatcttttct tgcattaaaa gataaaaaag cgcactagaa tcacttccat aagaaaaagc
     9481 gagtaaattt ttaccccttt ttaaaaggga taaaatttca tttttaattt gcatctactt
     9541 ttcttaaagc cttagcaagg agctttttat caaggttttg taaaatttca cattcataaa
     9601 tttgccccat ttctaaattt ccacattcac tttcattgat aagaatttct ccatcaatct
     9661 ctctatccca tcttagatct ttagctgcga tgaaaaactc tccctcgcta ctttctcctg
     9721 tgcaaactac taaacgcttt tgccctactt ctttttcaaa acctttttct atcacttcat
     9781 caacaatttt ttctatgatt ttaagccttt tattgatcac tttaaaaggc acttgctcca
     9841 tatcaaaagc agctgtatct tcttccttgg aatacgcaaa aacactcact ctatcaaaac
     9901 caaagtcttt aacaaatgca caaagttctt caaaatccgc ctcactctca cctggatgtc
     9961 ctacgataaa gcccgtgcgt aaaaagctat ttggcgcact tttcattaaa tttagcattt
    10021 ctttaagtct tgtgctattt gccccacgct tcatgatttt aagcatatta tcacttatat
    10081 gctgcaaagg catatcaaaa taatttacaa aaatttcaga agctataatg cgtttgatca
    10141 aagcttcact cgcactcgta ggataaaaat ataaaattct agccgctctt atacctttga
    10201 ttttttccac ctcatcgatt aagcgtataa gtccatcttt ttcaccctta tcaaacaaat
    10261 aagaacttgt atcttgtgca ataaaagaaa agtccttata acctctagct accaaatctt
    10321 taagctcagc tacaatgcta cttatttcgc gagattttaa cttgccttta aaacttggaa
    10381 tagcacaaaa agagcatttt tgattacaac cttcggcaat ttttataaaa gcatgggaat
    10441 ttgaacctgt gataatgcgt ttggaatttt cactctgtaa ataagtcgaa tttgaaaata
    10501 aatttgtttt tttaagtatc atttcgtcga ttctttcata atcacccaca cctgtgaaaa
    10561 gatcaacctc aggaagttct ttcataagtt cttcgcggta acgctgcatc aaacaacccg
    10621 taaccaccaa aagagaatct ttttttcttt gttcgtgcaa atccaaaatc acattaatac
    10681 tttctttttt tgcactatcg ataaaaccac aggtatttac gattaaaaca tcggccttat
    10741 ttggttcatc gcaaagctca taagcactaa gacgtcctag catgatctca ctatcgacta
    10801 aatttttatt acaacctaaa gacataagat aaagttttga catttttttc ctatattaaa
    10861 gttttctttt gatataattt ttgattttaa aatataatta tagcaaagaa attttatgga
    10921 taattacgaa tttagcgaac ttttaaaaac tttaaaaaac aaagtcggca acatagcctc
    10981 catcatcaag cctgaaaata tccaaacaag gcttaaagaa atcgaagagc ttgaaaattc
    11041 tccttctttt tggagcgatg taaaacaagc agggatcata ggcaaagaaa aaaccaaaat
    11101 caccaatcta cttaaaaact atgaaaatgc ttttaatgcc ctaaatgacg caagcgaact
    11161 ttttgatctg gctaatagcg aaaacgatac agaaacgctt gaagctttat ttaatgacgc
    11221 accaaaactt gaagatacca tcacaagtct tgaaatttcc atgcttttaa gcggggaaaa
    11281 tgatggtaaa aatgccattg tttccattca cccaggtgcg ggtggaacgg aaagtaatga
    11341 ctgggcaagc atgctttata ggatgtattt aagattttgc gaaagagagg gttttaaagt
    11401 cgaaactcta gactttcaag aaggcgaaga aacaggactt aaagatgtga gttttttggt
    11461 taaaggagaa aatgcttatg gttatttaaa agctgaaaat ggcattcacc gtttggtaag
    11521 aacttctcct tttgatagtg caggacgccg ccatacaagc ttttcaagtg ttatggtaag
    11581 tcctgagctt gatgatgata tagaaattga aattgaagaa aaagacataa gaatagatta
    11641 ttacagagca agcggtgcag gcggacaaca tgttaataaa acagaatcag ccgtgagaat
    11701 cacacatttt ccaaccggta tagtcgtaca atgccaaaat gacagaagtc agcacaaaaa
    11761 caaagccacc gcttttaaaa tgctaaaatc tcgtctttat gaacttgaac tcatgaaaca
    11821 acaagatagt gctaatactg gagaaaaaag cgagataggc tgggggcatc aaatccgttc
    11881 ttatgtgctt ttcccttatc agcaagttaa agataatcgc agcggagaag ctttttctca
    11941 agtggataat attcttgatg gggatatcaa aaaaatgata gaaggcgttt tgattgcttt
    12001 aaaagcagag taacaggctt taaaaataag taatttccgc aaaatgtcag tataaaaagg
    12061 aattagaaag atagcgggat tttcccgctt gttttattat cttgcataaa acctaagagc
    12121 atcattcaca gaataataaa ctcttttctt aaaatcttta tcgcaataaa cactcacaac
    12181 tttatagtct ttttatcgtt tggatttaat aagaaaacat agtttgagta tggagtttta
    12241 tctatttcta aatcacgctt catttcttta attttgcctt ctggattgtt aatatcacta
    12301 attgttctga ctgaagtata atcataaagt ttataatttg gatatttttt cataatctct
    12361 tgattaccta aatcaaacat agcttgatcg ttgccattgt tttttaactc gactaaatcg
    12421 ccatcgccac aatctacaat caaagtcata gctcctaaag ccaaagcact tgttaaaatc
    12481 tttttcatta tttttgctcc tagttttaaa attaaattaa tataactata cctaaattta
    12541 aaatttaaat atcatttttg caataaattc taaagtaaaa atcacgtaaa aatttaactc
    12601 ataattattt cattcaaaca aatttttatg caaaatttct tctaaaacca cagtagcata
    12661 agagcctttt tgcaagaaaa actctataca aaaatgagct ttttcttcat cataacgcca
    12721 ttttaactct tctaaatatc cccacataaa gcgtcttgaa ccttgcattt tagccttaaa
    12781 ctccaaagta tctttaaaaa tttcattttc taaatttaag gccaaacctt ctcctgtttc
    12841 ataagcctta gcaccgatta aaagccccat ggcgcttata tctcttgcct taaaacgccc
    12901 aagctcagca cttaaatcct cgcataaaaa acactttcca aaaggataat gccctaaaac
    12961 ctcacctttt aaaagcttaa aaaattgttc ttgtttttta agttccttag cttcttcttt
    13021 agaaatttta taaatttgga tcaattcttt ttcgctaaaa tcatttgcaa aatgtgataa
    13081 ctccactctt ttactcaaat agcgattaaa aagctcactt tgaaaagctg aaattaaaaa
    13141 ctctttcatt tttacatttt tcattttttt gccacgcaaa atttcaagcc cttctttata
    13201 attatcccca aattttccaa aacgctgata accaaaataa ttcgcaaaac cttgtttatc
    13261 caaattcatc aaagcttgtt ctagctttaa agcatcgctt ggcaaaactt tttttaagcg
    13321 tatgaaaaaa gaatttcctt ttaaatgccc tattcttagc ttgttttcat gggtaaaaat
    13381 ttctaaaatt ttaagtttag aatgagaaaa atttgacaaa aaactctcaa attttttagg
    13441 catagaaagg tattgaaagg ttgatccttg cttgtcttta agccctgcat aaccaaaatc
    13501 tcttatttta accccgcttg cttcacttaa aatttttaaa gcttcatttg tggttaaatc
    13561 ttttttattg atatgcaaaa taagatgttc acccttgccg ctaaattcat acaaaggctt
    13621 ttcacgcact acaaaatcat cgctattttt actaaaatac gcattaatag gactatgttt
    13681 taagctatac aaaggcttaa aaatggtgtt ctcttccgct aaattcatat tttcctttca
    13741 ctgcttttcc aaagatattt aatttcacgc cgtgtttttt ggctattgtt tctatatttt
    13801 gccgttcttt ttcatcaaaa gcaaacaaaa tttcatattc ttctccgcta taaagcgtat
    13861 aatcatcaag ttttttaaac caagaaatac cgcatttatt taaagctaaa agtcttgata
    13921 aatctttgct taaaccatct gaaatatcca tagcacaaga aattaaaggt gcgacttcat
    13981 aaaaaaaact agctcttaat tttggcttta taaatacatg gtttggtttt aaagtgcccc
    14041 cattttgtaa aatttcaagc ccttttaaac ttcgccctaa ttttcctgta taagcaagta
    14101 aatgtccttt ttttaaacct tttctaaaaa cggctttatc gttaatcttt gaaatgatag
    14161 taagactaat gtctatttta tcattgctta tagtatcacc gcctatgatt tttatattaa
    14221 atttcctagc tgtttttaaa aaaccttttt gcaaggcttt gatctcattt tcgcttaaat
    14281 tttttggtaa agcaagtcct aaaagtgcgt attttggtac agcattcatt gaaatagcat
    14341 ctgagatatt aacaagcatt gcttttgtag caatttgctc taagctaaac cactctcttt
    14401 taaaatgcac attttcaaaa aacaaatcct tactaaaaca ccaatcatca ataatagctc
    14461 catcatcgcc atttttttca tttaaaaaag ctttgataat aaaatcttct ttgttcataa
    14521 tgcgtgattt tataaaattt ccttttaaat
//
LOCUS       DAPIWU010000040        13974 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.040, whole genome shotgun sequence.
ACCESSION   DAPIWU010000040 DAPIWU010000000
VERSION     DAPIWU010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13974
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.040"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(63..377)
                     /gene="trxA"
                     /locus_tag="RJ285_000923"
     CDS             complement(63..377)
                     /gene="trxA"
                     /locus_tag="RJ285_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDV7383719.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            complement(434..772)
                     /locus_tag="RJ285_000924"
     CDS             complement(434..772)
                     /locus_tag="RJ285_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDV7383720.1"
                     /translation="MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKIGEIDIIAK
                     KDEILHFIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKND
                     VIQFCENISF"
     gene            complement(772..2019)
                     /locus_tag="RJ285_000925"
     CDS             complement(772..2019)
                     /locus_tag="RJ285_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HDV7383721.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALSRSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFEQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            complement(2023..3225)
                     /locus_tag="RJ285_000926"
     CDS             complement(2023..3225)
                     /locus_tag="RJ285_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HDV7383722.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVVIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            complement(3237..4043)
                     /locus_tag="RJ285_000927"
     CDS             complement(3237..4043)
                     /locus_tag="RJ285_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383723.1"
                     /translation="MVKKIIILTLWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(4037..4975)
                     /locus_tag="RJ285_000928"
     CDS             complement(4037..4975)
                     /locus_tag="RJ285_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383724.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSFNTWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSVTVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(4968..5651)
                     /gene="rlmB"
                     /locus_tag="RJ285_000929"
     CDS             complement(4968..5651)
                     /gene="rlmB"
                     /locus_tag="RJ285_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDV7383725.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKINNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(5665..6489)
                     /gene="rsmI"
                     /locus_tag="RJ285_000930"
     CDS             complement(5665..6489)
                     /gene="rsmI"
                     /locus_tag="RJ285_000930"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDV7383726.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(6492..6692)
                     /gene="rpmE"
                     /locus_tag="RJ285_000931"
     CDS             complement(6492..6692)
                     /gene="rpmE"
                     /locus_tag="RJ285_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDV7383727.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(6771..7427)
                     /locus_tag="RJ285_000932"
     CDS             complement(6771..7427)
                     /locus_tag="RJ285_000932"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDV7383728.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(7429..7836)
                     /locus_tag="RJ285_000933"
     CDS             complement(7429..7836)
                     /locus_tag="RJ285_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383729.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(7836..8261)
                     /locus_tag="RJ285_000934"
     CDS             complement(7836..8261)
                     /locus_tag="RJ285_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDV7383730.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(8261..8842)
                     /locus_tag="RJ285_000935"
     CDS             complement(8261..8842)
                     /locus_tag="RJ285_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HDV7383731.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKVEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(8839..9582)
                     /locus_tag="RJ285_000936"
     CDS             complement(8839..9582)
                     /locus_tag="RJ285_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDV7383732.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENP
                     EFIKFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(9585..10547)
                     /gene="moaA"
                     /locus_tag="RJ285_000937"
     CDS             complement(9585..10547)
                     /gene="moaA"
                     /locus_tag="RJ285_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDV7383733.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(10560..11075)
                     /locus_tag="RJ285_000938"
     CDS             complement(10560..11075)
                     /locus_tag="RJ285_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383734.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(11072..11569)
                     /locus_tag="RJ285_000939"
     CDS             complement(11072..11569)
                     /locus_tag="RJ285_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383735.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(11560..12444)
                     /locus_tag="RJ285_000940"
     CDS             complement(11560..12444)
                     /locus_tag="RJ285_000940"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HDV7383736.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            12515..13384
                     /gene="miaA"
                     /locus_tag="RJ285_000941"
     CDS             12515..13384
                     /gene="miaA"
                     /locus_tag="RJ285_000941"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDV7383737.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIQTRTKEMLDNGLLDEAKILFSKFD
                     YKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(13370..13933)
                     /locus_tag="RJ285_000942"
     CDS             complement(13370..13933)
                     /locus_tag="RJ285_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HDV7383738.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNINLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT         4772 a         2237 c         1732 g         5233 t
ORIGIN      
        1 aattattatt tagtataaat ttgaaatttt taagaagaag gctagttata ctagccttta
       61 gtttatagta aagagtttag tttatcacta attgcttgtt tagattgtgc accaacgagt
      121 tgatctacaa cttcaccatt tttaaagaaa ataagtgtag gaatagagcg aacaccaaat
      181 tcagctgcta aatcaccttg ttcatctgta tttactttgc aaattttagc tttaccatcg
      241 aagtcatttg caagttcatc aataaccgga gcaagcattc tacaaggtcc gcaccatgga
      301 gcccaaaaat caactaaagc tacaccttct tttgcttgag caaaattatc acttgttaat
      361 tcaatatatt ttcccataat ttttcctttc tttaattttt gtctaattgt attttatttt
      421 tttaaatatc agcttaaaaa cttatatttt cgcaaaattg tatcacatca tttttaatgc
      481 aaatcagatc aatctgaaaa tccgatgaaa ttccattttt aagatgataa aattctatag
      541 tttttaaaat tttttcaagt ttttttctat ccaaacgctc agaaacttca taatcatttt
      601 gagtaaattt aacctctata aaatgtaaaa tttcatcttt tttggctatt atatcgattt
      661 ctccaatttt agaatggaaa tttcttttta aaatttcaaa gccttgtttt tttaaaaatt
      721 tacaagcctt atcttcacct aaaattccat ctaaataagc ttttacaccc attattctat
      781 acgcatcata aaaggcttgg tttttataaa atcttgtttg cgtaaaattt caagcaaatt
      841 ttgtatgctt ttttcataag ttaaatgcgt agtaaaaaac aaagtactgt aattttcatc
      901 atttttttta ggtttttgta aaaaactatc gatagaaata ttattttcac tcatcaattg
      961 cgtgatttta gataaaaccc ctattttatc ttcaactttc acccttaaat aatattttgt
     1021 ataaatttca tctttgctta aaagctcgta ttctaaagta ttcacaaaac caagcattgg
     1081 tgcttttacc tgatctcttg ctatatccat aagatctgaa atcacagcac ttgcagtggc
     1141 ctctcctcct gctcctgctc cataatacaa actttcaccc aacaaatctc cattaatgct
     1201 tatagcattc atcactccat caacttttgc aagcattttt tctttatcta tcatagtagg
     1261 atgcactctt aattctactt tattttcacg caccttagct atacctaaaa gttttatagt
     1321 aaattcaaac tcattagcaa aatacatatc ttcaggtgca atttcgctaa taccctcgat
     1381 caaaatatct tcaggtttag ctttaagatt ataagcgata cttgataaaa caagcagttt
     1441 atgtgctgca tcttgccctt ctatgtcaaa agttggatca gcttctgcat aacctaaatt
     1501 ttgagctatt tgtaaggctt gttcaaaact catatttttt tgactcatag aacttaaaat
     1561 ataattactc gtaccattta aaatcccttt tatagccaaa atattatttg cacttaaacc
     1621 ttcttttaaa accttgataa taggaattcc tccagccaca cttgcttcat aaccaaaagc
     1681 taaattttta gccaaatttt caagttcata acgatgataa gcaagcatag ctttatttgc
     1741 agtaacaaca gcttttttct tttttaaaat ttcactcact attttaaaag cttcatctac
     1801 cccacccatt aattctacaa aaacatctac atcagcattt aaaatttctg caacgctatg
     1861 agtaattgga attaaagcat tttttttagg acttctagaa agagcgatca caggagtgat
     1921 actttgtcca catcttgcac gaatgagttt atcattttct aaaagaaatt taaccaccgc
     1981 acttccaaca gtgccataac caagaatcgc tactttcata acttactctt ttaaatattt
     2041 tttgatattg cgtgcagctt ggcgtatgcg attttcattt tcaattaaag caattcttac
     2101 atactcatca cctgcttcgc caaaacctac cccaggactt actgcaacac tagcacgttg
     2161 taaaagttgc tttgaaaatt ctaaactttt taaatgtctt ttgctttcag ggagttttgc
     2221 ccaaacaaac atacttgctc ttggtttttg aagtttccag cctgcatttt caaaagcttc
     2281 aagtaaaatg tgcattcttt tatcataagt tgcacggatt tcatccacac aagtttgatc
     2341 tccatctaaa gctatggtag ctgctacttg aataggtgtg tacataccat aatcaaacca
     2401 agattttatt tttttaagcg cactgactaa gcgtttattt cctactacaa aacctacacg
     2461 ccagcctgcc atattgtaag attttgaaag agtgtaagtt tctaccgcta catcttttgc
     2521 accttcaatt tccaaaatag aaggagtttt atagtcatca taagttaaat ctgcataagc
     2581 aatatctgaa ataatataaa atctttcttt ttttgccgtt gctatcaatc tttcataaaa
     2641 acttttctca caagttactg ttgttggatt atgcgggaaa ttaacaacga catattttgg
     2701 acgcgggatg ctttcattta aagttttatg caaattttca aaaaattgat tttcatcaag
     2761 ctcaaatttt tcattataag ctaaaggcat ttttgctaca ttacctcctg ctataataaa
     2821 agcttgagta tgtataggat aagcaggagt tggcacaata acaacatctc caggatttat
     2881 aatcgctctt gcaagattta caaaaccctc ttttgaaccc atggtagcta caacttcatt
     2941 ttcaggatct aggttgacat tatattttct tttataccaa ttacaaattg ctaagcgaag
     3001 tttataaatc cccatggaag tagaatatcc cgaggtttta tctttgttag cactttcaca
     3061 aagtttatct ataatgtgtt gtggagtttt accatcggga tttcccattg aaaagtcgat
     3121 gatatcctct ccagcacgtc ttgctgccat ttttatcgca tttacctctg cgaaaacata
     3181 atttggaagt ctttctatgg tattaaaacg gatttcatca aacatttctt aatcctttat
     3241 tttttaagtg tgatttttaa acccctgcgt atattatcta aactatacat atcgcttaca
     3301 atagcatata tagcaccatt tggaataagt tctgaaaaat gattattttt attttcgctt
     3361 tttactgctt taattagatt tagattttta tctaaaaaga agattttagg aaaccaattg
     3421 tctaaatcat ttgcatcaat aatcaaattt gtagcatttt ttaaatcaag cacatagtct
     3481 ttaaggggct tttctaatga ttttggagta tttaaattaa catttgtatt ggtttttaat
     3541 acagcattgg aaaaatttaa atcatattca tagtcatatg ccccaatgcg cttaatatta
     3601 tctatataga cagaattttc ttttaagaga ttgtaaagcg ttccaggatc taaaacatat
     3661 tgagattcta cttgtatagt atagtcaata tttccttctc ttaaaatcaa atctgtaggg
     3721 ataaaatata tatatccagc atctgttaaa acatcggata aaattttaaa aaacataact
     3781 tcatcagctt ttgctttaaa atttagtctt agactttgag gatttgatag tgttaaggca
     3841 attaaagaat tggtttttaa tatttgagat atttttgcaa tatcacaatt tccattatta
     3901 tctatgtaag aattatttga aaataataat tctagttgag aatttttact aggattgttt
     3961 actaaatttt ttgctaattc aagacttgag attgcaaaag atatattaac ccaaagagta
     4021 agaataataa ttttttttac cattctttac ctttatttaa ttttacaaat tcagcagctg
     4081 aaatacttgt aatttttcca tctttaatca agaaacgttt tgaaattcct gcaggaaatt
     4141 tttgttcttt attttcttga tcaaacattg ttaaagctgc agcccctgtt aaaattaact
     4201 gatctttatc taaagaaata ttaaaatctt tttctttaac aaagcttgtt tttttaagac
     4261 tttttaaatc tattaaacct atccaaatct tggtagaggt tttaaaatgt gcttctttta
     4321 aagaatcagt ttttggtgta tttgtgtctt cttgaatttg ggtatttttt tcttcatcga
     4381 gtagggttgt gttattttca ctgatattat tttctatgct tatgttttta tcattttctt
     4441 gtaatgagat gttttggctt ggtaaaacgc tctctgtttg atttgtttct tgtgctttat
     4501 tgttgtctat aacaacaaca ttgtttccac ctaaagattt taaattttct tgtgcttgtc
     4561 ctatgatatc tataactgtt acgctagtat tattttgttc atctttgaaa aaagttttaa
     4621 gtgtatcaaa ataataaatt ccacttccta taatcactaa aacaataaga acaatcaaaa
     4681 aaggccaagt gttaaaggat ttttgactat aagcatctag ttttggggtt atcatttttg
     4741 attttgtttg tggagtagga ttgttttcgt taagataagc ttcatactct tcgttaaaat
     4801 cactaaagtc gagttcgtat tctctgctca aaattttaac aaaaccttta acattaaaac
     4861 gacttaaaac agcaaaattc ttttctacta aagcttcaag aaaatcaagt tcaatttgcg
     4921 tttttgctgc aacttctttt aaatttaatt cttgtatttt tttccaatta agcatttaac
     4981 atcctatcac aaagtattgc aaaagcagcg ctgacattaa gactatcaaa attatttttc
     5041 atcgcaatgc ccacacattc atcgcatttt tttacaattt tagagcttaa accaaaaccc
     5101 tcactaccca aaactaaaac ttttttacca ttgtttattt ttacactgtg aatttctttt
     5161 cccgagccat cactcgcata aaaataaaaa cctacttgtt ttagttcatt tattacactt
     5221 aaagcatcgt tgcttatcac aataggtaaa tcaagagccg ctccgctgct tgtgcgaatt
     5281 actccttcca tggctaattt ttcaccaata aaaattaaag ccccaacccc taaagcataa
     5341 gctgtacgcg tgatagcccc tatatttcct acatcactaa ttccataaag cataacaata
     5401 aaatcatttt ttttgatctc atttaaattt gcaaaagaac tttctttaat atctagcaaa
     5461 aaaccttgat gatttccacc tttcgcataa gcttgagcag ttttaaaatc aagttttttg
     5521 attttaaaac ctgattttgc gattttggaa aaagtaattt tatcacattc ttttgctaaa
     5581 taaagctcat tgatacagtc tttatgatat tctaaaatat aaaaaaatat ttgcttccca
     5641 taaactatca tattaaaatt ttacctaatc ttgacttaaa agcagttttt gataaatttc
     5701 ttttgcattt tttccattga tctttgataa taattttgct tttgctttta aagacagctc
     5761 taaatccata atatcttttt cacaaagagt attttgcaaa aaattttgct cttttgattg
     5821 cagtactaca acccattcac cgtttaaatt agactttttt aaaatttcag aaagctcttt
     5881 agcattgcct ttaaattttt tttcaaattt tttactgatt tctttaatca aaaaaatttc
     5941 tctttggctg tctagaatca taatctgttc tactaaagat aaaatacgct tgggggattc
     6001 gtaaataata cttggataag gaaagtttaa aattttttct atatcttttt gtctttcttt
     6061 gcctttattt gctaaaaaac caataaagat aaattctttt tgacaaaatg ctgagcttac
     6121 aagagcaact aaggctgcat ttgcacctgg taaaatttca taggtgatat tattttcttg
     6181 tgcaaattct accaaagcct tgccaggatc actaatccct ggcattcctg catcgcttaa
     6241 ataagctaca tttttttcaa atatctttaa atcaatactt gctaaaactt ctttttcatt
     6301 atgggagtgt aaggctataa atttagaaat atgtatatca gtgtgaaatt tggtatttaa
     6361 taacgaaatc aaagacttac ttactcttgt atcttcgcaa aacacaagat cgcaagtctt
     6421 taaaagttct aaggctctaa aagaaatatc gcttaaattt cctatgggag taggaataaa
     6481 ataaagcata attattgcat tgcgtatttt ttcttaaatt tctctacacg acctgcagca
     6541 tctacaattt tttcactgcc tgtaaaaaaa ggatggcaat ttgaacaaat atctactctt
     6601 aattctgctt tgtttgactt tgttgtaaaa gtatttccac aagcacaact tactttgcat
     6661 tctacatatt ctgggtgaat ttcttttttc attagttttc cttaaaaatt aaaacaataa
     6721 gccgtgatta taaattattt aacataaaaa agagattaat ttaagaaaag ttaaagcaaa
     6781 atttttgaag ctatagctat aatagctgtt tgacttttta gaatattaga gcttttaaga
     6841 gagattttcc ggttaaacaa taatctctca tcattgttaa atccaccttc aggacctata
     6901 aaatataatt ctttttcatc gaaatgactt tgttgttctc cttgaaaatc aaccataatt
     6961 gcatttggaa atttttgaac aaattcttga gtgctttggt ggataattaa atccatttta
     7021 gtatttctac cgcattgttc acaagaagaa ataatgattt tttcaaatct ttctaaatcg
     7081 attttaaaat ttctttgtga aaaatttgta aaaaccaaat gtaacttttt tactccaagt
     7141 tcatttaaga aaggtagagt tttttctaaa attttaatat ctataatggc taaggctaag
     7201 tttaattcac tttgttttat attttgtgat tttttgttta aaaattttaa agtgcaagaa
     7261 tttcttgtta aatttgtgat tgtatagttg taaagaaaat tatcttgtaa atttctaaga
     7321 tttagctccg aattttcctt tactcttctt acttttaaat ggttaaagtt ttcaccttga
     7381 agttgtataa actcttctcc agcttgcttg ttatacaaaa attgcatttt atagatatct
     7441 ttctattaaa aaaggcaaaa acaataaaaa aatttcaaaa ggtaaaatca aacaactaat
     7501 ccatctaaaa gtggcatatt ttctaaatct tcttgctttt ttaaaacaaa caaagtgaaa
     7561 aattgctaag gcaaaaatta agatccaaga aaaaatcatt acccagatat tgacattcat
     7621 ttgaaattgt ttcattgctg ataacaaaca acctgtaaaa ataatcaaag ctaaaaataa
     7681 ataataaatt ggtaaaaata atcgtattct gcgaataaaa atgaattcgg ttttaaaatt
     7741 tccttgtgtt agtataagat aaaaaagcat taaaaaaccg ctcgcataaa gactataaag
     7801 atgtaaagct aaaaagaatt cgtaactttg atccattatt ttcctttgtt tataaaatca
     7861 gctaaatttt gaatttgttc atcacttaaa aaactatggt ttttatcttt tatcgttttt
     7921 attttttgta taaaaatttt attgctcaag gttttaatgg ccgtgctgtt tttaggtttt
     7981 aattcccctt tttctccatg acaagtggcg catttttgtt tatataaaga gttgataata
     8041 ctaggattga cttcatgttc atcatctgaa ctttgtgctt catcatctac aggtaaaggc
     8101 aggttggagt cacttaattc tgttttttca tcgttttgtt ctatttggac tacttcttga
     8161 tctgtatttt gagtcttaga aatatttttt tcatcattag aacaggcaga taaaactaat
     8221 aaaaaaaaac ttaaggcaat taaaatttta gctttttgca ttaaatctcc tttggattta
     8281 taaaaatttc ttcatttttt aatttgttat aaaaatctat atcattccat tctactttaa
     8341 tgccattgga aaattctatg tcttgaagtg aaatttttgg cattagctca ctataggcat
     8401 cttctctaaa accttgtgca tagcctgttc ttgtttcatg aacaatgata ctttgtaaag
     8461 tcactccttg ttctccattt accatttttg tttgttttaa taaagcatct ataagtatga
     8521 aaaatacacg acaaaaattt tcagcactta cattaacagg caggcaaatc caacgacttg
     8581 aatatttttt catttcttct aaatattttg cgtcatcata tttaaaaaga gttatagcat
     8641 gatcaaaact atcaataatt tggcgtatat aggtttttaa aagtccaaaa tcatagacca
     8701 ttccagcatt atctaaatat ttgctttcaa gtaaaacttc aactttgtaa gaatgtccat
     8761 gaatgctact tttgcaacgc ttagaagaac aaaatctaac aatgtgtgcg ttttcaaatt
     8821 caaataattt tcttataatc atacaccctc tttatcgttc caaagacgaa tatgaattct
     8881 atcagaataa ttataaccat tcttaataca aaattcagca attttttgag catttttttt
     8941 aaggttttgc tcattttcac ccataggcat acaaaaaatt tgatttggag cttcttttag
     9001 aatttcattg atttctaaaa atgaattatc aagggtattg gcatctaaaa caaatttata
     9061 aaaactatct tttgcgtaat ttttaaatgc ttttaaagct ttaaaattta atcgtttatc
     9121 tttttttatc ccactatttt ggagtttaac gcttaaagca aaaatacatt ctttgtaaaa
     9181 aggatatcta tcaaaatcaa tttctatact tccattgctt tcaaagtgta tttcaaattt
     9241 attttttaat aacatttgga taaattttat aaattcagga ttttcataat ggattaatgg
     9301 ctctccacct gtgataacaa ctataggatc aaagtcttgt tttaatttta tcactctttt
     9361 taaaagttca ttagcattta aagtttcata actttcttta aaatcttttg tgaaaacagc
     9421 tcttatcgtg tcacatccaa tgagagtttt atcgtttttt gatattttta cattaaaacc
     9481 taaacagttg aaattgcaac cagcaaaacg cataaaaata gctaattttc cattatattt
     9541 gccttctcct tgaatgctta agaaactttc aacaagttgc aaaattaacc tccagtttga
     9601 taaaaagcac gagatgaggt ttcattatca acaacactcc atttattttt ttctggttta
     9661 tttcttaata cttcttgtaa tatttctaca gcggctttaa tatcaccttt tcgaaccgct
     9721 tcttttatgc ttaatgcttc atcaaaataa aggcaaggta ttaacaagcc ttcagcactt
     9781 aagcgtatgc gattgcaaga atcgcaaaat tcatggctat gaggatctat aattccaaat
     9841 tcataatcat ctgccttgta aatactcaca ggtgcttttt catctttttt tataagttga
     9901 atttgatatt tttgactcaa aatttgtata atttcatctc tttttaatcc ttgtaattta
     9961 ccataagcat gagtattttc cataaattct ataaagcgaa tttgagcttt ttttgatttt
    10021 gcaaattcca aaagagatat cagttcatca tcgtttaaat ttttaagagc tacagtatta
    10081 agttttactt tcaaatctag atttaaagct tcatcaattc cagataaaac actatctaat
    10141 acatcttttt gcgcaagagt ttttgctttt ttgtgatcta gggtatcaag tgaaatatta
    10201 agtcgtttaa gtccagcatt ttttaggtct ttagcaaagt cttttagtaa aaatccattt
    10261 gtagttatag caaggtcaat atcgctttta taatcgctaa tcatttttat aaaaatactt
    10321 aaatcttttc ttaataaagg ttccccacct gttatacgga ttttttcaat tccttcgtct
    10381 atagctgctt taacaaataa aaaaagttct tcaaagctta ataaattttc ttttggctga
    10441 taatcgaaag gaatttttgg catacaataa aggcagcgaa agttacatct ttgtgtaact
    10501 gaaattctaa gataatttat ctttctaccg aattgatcta taagcattta ttttccattc
    10561 tattttatta atttcttaaa ttttaagaca agttctacat ttccagtgcc aatgcgtaaa
    10621 tctttagcga tttgttctat gctttttcct tctttgaaaa gattttctat tttttgttct
    10681 tctgtatcgt aatttggtgt aagtttagcc atgctttgtg ctttttgttc caaatttaaa
    10741 agacgatttt gttgttcatt ttgaaaatct tctatgatat gttccatagt ttttagtgtt
    10801 cttaaaacag gagtgatttt tgaactgatt tgtttatcaa gttcaatcat aatttcttct
    10861 tttaaaagag aggttttata gtcttcatcc tcttcgctat catctttaac tcctaattct
    10921 ttacgaaaat aatgaagttc tttggtaata tcttctatca cattttgaag ttttgctatt
    10981 tttgcattat tttctctttc tttgatattc atgtaggcta gcattgcaat taaaagcaca
    11041 attataaaaa ctaaataaag tacatcatca ctcattcttg gcctttctta tttcttatca
    11101 tatttctttg gatttcaaca acaaaagcat caaaagccat tttgtcttca ggcttaattt
    11161 tgataatttt tgccaatgtt tgactttgag ctttgataaa aatagctatt ttttgattat
    11221 ttaaatcaaa tcttaaataa tattctttat cttcttctaa aatagtatcc aaaaaattta
    11281 gatactcaaa atttaaagat tctattaccc ctttttgctt aagtggtata agttctttat
    11341 ttttatctaa agaattttca agccttaaaa tatcttcttt tagacttaaa agaagatcaa
    11401 aaataatttt ttcaccctcg tcaaaatcaa tgcgtaaagc aagttttttc cattttaaaa
    11461 tttgagaaat tgctccaagt tttaggtatt ctccaagaaa acggttattt tctatttcac
    11521 aacattctaa atgagcttca aatcctgctt taaaaagtgc taattccata ataaatcaat
    11581 ccaaataaaa ataaaaaaga taatacttaa ataaccattt agagtaaaaa atgctctatc
    11641 aatatgagca aaattcttgt gaacaatttt atgttccaag gctaaaataa taccgcttat
    11701 aattacccca ataagtgcta tttttccaag tgctacaccc caaacttccc acacaaaaag
    11761 aagccaaaat aataccgcta aaatatggca aaaagctgat ataaataaag tagcctttga
    11821 accaaattta gcaggaatag agtgaagtcc tattttttta tcatactcca tatcttgtaa
    11881 agaataaagc agatcaaacc cagctgtcca aaaagttaca cctaaacata aaataacgct
    11941 ataaatgtga atttcaccca taattataac acttcctgca ataggcgcaa gtcctaaaca
    12001 aaatcctaaa actaaatgtg ctaaagaact aaagcgctta aaagctgaat aaatagccaa
    12061 taccaaaagc acaggaaaag acaaataaaa ggccaaagta ttaataaaat aagaacatga
    12121 tataaaaata agtgcattaa taatgataaa aatccatacg ctttttctac ctatttttcc
    12181 actgacatta gggcgatttg cacaacgagg attatcctta tctatatctt catccattaa
    12241 acgatttgta gccatggcaa aatttcttgc acttaccgca caaataatgc ctaaaatcaa
    12301 cgccttaaaa ccaaaccaag cagtgtcatt tgcaagtttt gatgctacaa tcatagagga
    12361 aaataaaaaa ggcaaagcaa aaatagaatg cttaaatact acaagttcta aaatatcttt
    12421 aaattttatc cagaatgtgt tcatttttct actttaaaat attttttgct atgattttac
    12481 taaaattttt ataaatttta ggataaatat taaaatgttt tttgaaatag cattaatagg
    12541 aacaaccgcg agtggaaaaa catacatagc caatacttta gcaagagaat ttaatgctgt
    12601 tgttttaagt cttgatagtc tttgtgttta taaagagatt aatatagcaa gtgccaagcc
    12661 ttcacaagat gatcttgcga gtataaaata ctttggggta aatttattga gcgtgaatga
    12721 acattttaat gttgagttat tcataagaga atatcaaaaa gcaaaagaat ttgctttagc
    12781 tagaaattta cctctaatta tagtaggtgg aactggattt tatttaaaaa ctatgataga
    12841 tggtttaagt gaaaaaacct tagagtcaaa gagttcttta aataacgatg aaatttatgc
    12901 tcttttatta aatattgatc caaactataa aatagaaaaa aatgatactt atagattaaa
    12961 aaaatggctg ggtatttatg aacaaacaag agaaattcct agtgaatttt taaaaagaac
    13021 acaaaaaact ggggtgctta aagatataga aatttatgag cttgcgtggg ataaagaaat
    13081 tttaaaaaaa cgtattcaaa ctagaacaaa agaaatgctt gataatggac ttttagatga
    13141 agcaaaaatt cttttttcta aatttgatta taaacttaaa gcattaaatt ctataggttt
    13201 gaaagagtgt aaagaatatt tagatggaga aatttccttt aaagagcttg aaaatttaat
    13261 cacgatacat actacacaac ttgccaaaag acaaagaact tttaataaaa aatttcaaag
    13321 taaagccttg gaatttgata aagctttagc tactttaaga atgaaatttt caatcgaaaa
    13381 ataaatgttc tattagaatt tttactccta gtataattaa aaccaatccg cctaaaagtt
    13441 cagctttatt tttaagataa attccaaatt tattccctat ttttagagca atgatacata
    13501 aaatgaaggt gataatacct attaaaaata tagctaataa tagatttata tttaaaaatg
    13561 caaaactcac accaactgct agtgcatcga tactcgtagc aattgctaaa gctagcatgg
    13621 ttttaaagcc aaattgattg gcattactat cgcaattttc attttccaat gactctttga
    13681 tcatttttaa tcctattaaa gaaagtaaaa taaaagctat ccaatgatca atactcgcaa
    13741 taaaagatgc aaaagttatg cctataaaat aaccaatagt tggcatcaaa gcttgaaatc
    13801 caccaaaata aattccaaca ataagataat gttttaaatg tagtttttta acactaaaac
    13861 ctttgcatag tgatacagca aaagcatcca ttcctaaagc acaggataaa aaaataagac
    13921 tataaaaatc cataataaat cctaaaattt tataaaaaat tgaagatgaa atta
//
LOCUS       DAPIWU010000041        13881 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.041, whole genome shotgun sequence.
ACCESSION   DAPIWU010000041 DAPIWU010000000
VERSION     DAPIWU010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13881
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.041"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            195..479
                     /gene="gatC"
                     /locus_tag="RJ285_000943"
     CDS             195..479
                     /gene="gatC"
                     /locus_tag="RJ285_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HDV7383739.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            547..1110
                     /locus_tag="RJ285_000944"
     CDS             547..1110
                     /locus_tag="RJ285_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDV7383740.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSAFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHANEKLQDIVSDLNNTQKGE"
     gene            1112..1585
                     /locus_tag="RJ285_000945"
     CDS             1112..1585
                     /locus_tag="RJ285_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDV7383741.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1586..3091
                     /gene="lysS"
                     /locus_tag="RJ285_000946"
     CDS             1586..3091
                     /gene="lysS"
                     /locus_tag="RJ285_000946"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDV7383742.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMVNFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            3088..4332
                     /locus_tag="RJ285_000947"
     CDS             3088..4332
                     /locus_tag="RJ285_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDV7383743.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLILMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     KNIKQELKKLASNFIIYERAMF"
     gene            4329..4874
                     /locus_tag="RJ285_000948"
     CDS             4329..4874
                     /locus_tag="RJ285_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HDV7383744.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            4888..5724
                     /locus_tag="RJ285_000949"
     CDS             4888..5724
                     /locus_tag="RJ285_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HDV7383745.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSENTTPQASTPKQEVTQTAKPKEE
                     AKKQTAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAVELAKIRKDIAKDAFSFT
                     LK"
     gene            5721..6509
                     /locus_tag="RJ285_000950"
     CDS             5721..6509
                     /locus_tag="RJ285_000950"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDV7383746.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKKRFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6584..7483)
                     /locus_tag="RJ285_000951"
     CDS             complement(6584..7483)
                     /locus_tag="RJ285_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDV7383747.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSNTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7573..8388
                     /locus_tag="RJ285_000952"
     CDS             7573..8388
                     /locus_tag="RJ285_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDV7383748.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8457..9239
                     /locus_tag="RJ285_000953"
     CDS             8457..9239
                     /locus_tag="RJ285_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HDV7383749.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            9223..11214
                     /locus_tag="RJ285_000954"
     CDS             9223..11214
                     /locus_tag="RJ285_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HDV7383750.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11207..11932
                     /locus_tag="RJ285_000955"
     CDS             11207..11932
                     /locus_tag="RJ285_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HDV7383751.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            11960..>13881
                     /locus_tag="RJ285_000956"
     CDS             11960..>13881
                     /locus_tag="RJ285_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDV7383752.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKNKLNTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDSRVDIFSIQNAQICILNFFKSGFISKQDLLKALKILEKISK
                     NTEMLDFISQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKNNISA
                     LIKKIEIKSHLEFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVE
                     KIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     QLELKNILSKYEMQNRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNSIVKLK
                     NIDNGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILRE
                     IKFENIKKIEELKTNLSLKYDFLKDDFDNGFEGFKDGISKNIDSIFQSEKFALLRLKI
                     EKLSNLKSDLYELETN"
BASE COUNT         4905 a         1632 c         2646 g         4698 t
ORIGIN      
        1 ttctgtgtta agttcatttt taacagcttt taaattatct tttagtccca aaatttatcc
       61 ttgaaaaaat atttttattt ttgtatagaa aaattatgat attgtatcat ataaattgca
      121 aaatatccta aacaatttaa agctttttat gatataattt tcaaaatttt aactttttta
      181 ttaaggttta agaaatgcaa atagatgaga aattattaag caagcttgaa aaattaagtg
      241 ctttacaaat aacaaaaaac agaaatgaaa ctattgcaca gttaagtgaa attgtgaatt
      301 ttgttgaaaa attaaacgaa cttgatttag attcccaaga gattactgtg agtactataa
      361 aaggtggagc tcctttgagg attgatgaga taagaaatag caatgttatt gatgaggttt
      421 tagattgtgc tccaaaaaaa caagaacatt tttttgttgt tcctaaaatc atagaatgat
      481 taacttagca tttagtgctt atttgtagaa taaatttaaa acaaaaaaaa tcagagagtg
      541 attgaaatga atttttattg gtttgatgct tttattttag gatttacctt gcttttaggg
      601 cttaagggta ttatcaatgg tttgataaaa gaaatttttg gacttttggg tattattggt
      661 ggtgttttta ttgcttcaaa atatgcaact caagcagctg aatttataca aagtgctttt
      721 tataagatag aaaatcaaag cttagctgga tttgctggat ttttggccat attaattatt
      781 ttttggatag tttgtttatt ggtgggtaat tttctttcta agttgattaa attaagtggc
      841 ctaggttttt tagatcgtat tggtggcttt atatttggtg gagcaaaaat ctttttaatt
      901 tttgcaattt tggttttttg tgtagcaaga atcgattttt taaatgataa attagataat
      961 tttgctaaaa atagctatac tttaaattta cttaaagaaa cgggatcttt tattatgaat
     1021 caacctttaa cagaaaatag tctagatcat gctaatgaaa agttgcaaga tattgtaagt
     1081 gatttaaaca atactcaaaa aggggagtga tatgctgata gaaaatgtgg aatatgatgt
     1141 tttacttgag agatttaaaa aaatattaag acaaggcgga cttaaatata ctaagcaaag
     1201 agaagtgctt ttaaaaactc tttatcacag tgatactcat tacacacccg aaagtttata
     1261 tatggaaatc aaacaagctg aacctgattt aaatgtagga attgcaactg tttatcgtac
     1321 tttaaatttg cttgaagaag cagaaatggt aacttccatt tcttttggtt cggcaggtaa
     1381 aaaatacgag cttgccaata aacctcacca tgatcatatg atatgtaaaa attgcggaaa
     1441 aattatagaa tttgaaaatc ctattataga aagacagcaa gccttgattg caaaagaaca
     1501 tggttttaaa cttacagggc atttgatgca gctttatggt gtttgtggtg attgtaataa
     1561 tcaaaaagca aaggtaaaaa tataaatgtt tgataatatt ttagagcagc aaagaataga
     1621 aaaagctaaa gagttaaaaa atttagggat taatccttat cctcattttt tagaaaagga
     1681 aatgtcttta aagactttta aggataaatt ttcttatatt ttagagcaag ttgaaaaaag
     1741 agatgaaagt gtcaatgctg ttgttgcagg acgtttgaaa cttttgcgta tagctgggaa
     1801 atcaattttt gcaaacattg aagatgagga tacaaattta caaatttatt ttagtaaaga
     1861 tagcgtaggc gaagagcttt atacgatttt aaaaaagaat ttagaggtgg gtgatattgt
     1921 tttggttaaa ggttttcctt ttgtaactaa aacaggtgaa tttagtttgc atgcaagcga
     1981 agtaaaactc gctacaaaag ctattgttcc tttacctgaa aaatatcatg gattaacaga
     2041 tattgagcaa agatatcgta aacgttatgt tgatatgata atgaatgtcg aagttagaaa
     2101 agatttttta gtgcgttcta aagtggtgag tttaatccgt catttttttg aaaataaagg
     2161 ctttttagaa gtagaaactc ctatgatgca tccgattgca ggtggagcaa acgctaagcc
     2221 ttttgtaact tttcataatt ctttaggcgt agaaagattt ttaagaattg ctccagaact
     2281 ttatcttaaa agacttatag taggtggttt tgaggcggtt tttgaaatca atcgttgttt
     2341 tagaaacgaa ggtatggatt taactcataa tcccgaattt acaactatag aattttattg
     2401 ggcctatcat aattataaag atttaatgga tttaaccgaa gaactttttg ctttactttt
     2461 ggataaactt aatttaggaa aaacaataga atttgatgga aaaatggtaa atttttccaa
     2521 accttttgaa agaataacct ataaagacgc actttgtaag tatggtggtt tagataggga
     2581 tttaatcgaa gataaggaaa aaattcttac taaattaaaa gcagatggtt ttgaagcgaa
     2641 tgaaaagctt gaacttggac atttgcaagc tgaacttttt gacaattatg tggaagaaaa
     2701 attgatcaat cctacttttg tgattgattt tcctatttcc ataagtcctt tatcaagacg
     2761 tagcgatgag gattctcaga ttgctgagag atttgagttg tttatttgtg gaagagaatt
     2821 ggcaaatggt tttaatgaac ttaatgatcc tcttgatcaa tatgagagat ttttaaaaca
     2881 aattgaagct aaaaatgcag gcgatgaaga ggcttgcgaa atggatgaag attttgtaaa
     2941 tgctttgggt tatggaatgc ctccaacggc agggcagggt ataggcatag atagacttgt
     3001 tatgcttttg acgaataaaa aatctattcg agatgtgata ttgtttcctg caatgcgtcc
     3061 attaaaatca gaactaaagg agaaagaatg agtttagaaa tgtttgataa agaaattttt
     3121 gatttgacaa acaaagagtt agagcgtcaa tgtgaaggtc ttgaaatgat agcgagtgaa
     3181 aatttcactt tgcctgaagt aatggaagtt atgggaagta ttttgacaaa caaatacgca
     3241 gagggttatc cgggtaaaag atattatggt ggttgtgaat ttgttgatga gattgaaact
     3301 ctagctattg aaagatgtaa aaaacttttt aattgtaaat ttgctaatgt tcagcctaat
     3361 tcaggttctc aagctaatca aggtgtttat gcggctttga ttaatccagg tgataaaatt
     3421 ttaggaatgg atttaagtca tggtggacat ttaactcatg gtgcaaaagt aagttcttca
     3481 ggtaaaatgt acgaaagttg tttttacggc gtagaacttg atggaagaat tgattatgaa
     3541 aaagtaagag aaattgctaa aaaagaaaag ccaaaattaa tagtttgtgg agctagtgct
     3601 tatgcaagag tgattgattt tgctaaattt agagaaatcg ctgatgaagt aggcgcctat
     3661 ctttttgctg atatagcaca tattgcaggt cttgttgtag caggcgaaca tccaagtcct
     3721 tttccacacg ctcatgtagt aagttcaact acgcataaaa ctttgcgtgg cccaagaggt
     3781 ggtattatta tgacaaatga tgaagagctt gctaaaaaaa ttaattctgc catttttcca
     3841 ggtattcaag gtggtccttt gatgcatgta attgctgcaa aagcagtagg atttaaattt
     3901 aatcttagcg atgagtggaa agtctatgca aaacaagtaa gaaccaatgc tcaagtttta
     3961 gctaatgttt taatggatag aaaatttaaa cttgttagcg atggaacgga taatcacctt
     4021 attttaatga gttttttaga tcgtgaattt agtggaaaag atgcagattt agctcttgga
     4081 aatgcaggta ttactgcaaa taaaaatacc gttccaggag agattagaag tccttttatc
     4141 acaagtggat taagacttgg aactccagcc cttactgcca gaggttttaa agaaaaagaa
     4201 atggaaattg tgtcaaatta tattgcagat attttagatg atattaataa tgaaaaatta
     4261 caaaagaata ttaaacaaga attaaaaaaa cttgcaagta attttattat ttatgaaagg
     4321 gctatgtttt gatttcacca atggatatgt cgctaattaa aataattggc gatcattatt
     4381 atataagacg cgataaaatt gtaaataaaa ttacacatag aggtcgctta ttttttgata
     4441 aatttgaaag agttgatgct cctttaaatt taaatgtcat gagagaacac gctgctaaaa
     4501 aaattgttgt cgctcatgat ttaataacaa aagataataa agtagaaaat attgtctttg
     4561 attataatgg ttttaatgct gaaagatttt atcaccgtgc acaacttatt ttaagagaag
     4621 aaggttttat aaatttcaca gcctataaga ctaaaactcc aggacattta catctttata
     4681 ttcataaagg acatacggcg ttaaacgaag gttattcttt agcgtctaaa ctttcaatga
     4741 tgtttgcaag taaaatgcca gtagaatgga aggtgtttcc tagcatggat gtacctaggg
     4801 aatttaatat tttaatattg ccttatgagg tttatcaaaa agaacgagga agttcttggt
     4861 ctaagcatat gtaagaaagg acaaattatg gaaaatcaaa aaaatgaatt tgatgatatt
     4921 attttagaaa aaagtaataa aagtgaaaaa gtaaaaaaaa ttcttttacg agttattgct
     4981 ttagttattt tgtttttagc tatcatgata gttatgaagc ttattaatgg tagtggtgat
     5041 gaaaatacgc aaaatcaaag tgtattgcca agtgaaccta tagcaactca agacaataac
     5101 aatgatactt cttttgaaag tatgccaatt acagataata cttcagcaga agatcaattt
     5161 gaggcattaa gaaaacaatt tcaagatgaa caaaatacaa ctcaaaatac aacaacctct
     5221 agttcaaata acaatgatac tacaaatttt gctatgcctg atcaagaagt tccagcagaa
     5281 ccaacagcaa ctacttcaga aaataccact ccacaagcaa gtactcctaa acaagaagta
     5341 acacaaactg caaaacctaa agaagaagca aaaaaacaaa cagctgtaaa aaaagaaaaa
     5401 gaaagtgcaa aacaaacccc taaaaaagaa caaaatgcaa atgatttatt taaaaatgtt
     5461 gatgctaaac ctgtacatcc aagtggttta gcatcgggta tttatgtgca aattttctca
     5521 gtaagtaatt tggatcaaaa atcaaaagaa cttgcttctg taaagcaaaa aggttatgat
     5581 tataaacttt ataaaactac agttggaggt aaagaaatta ccaaggtttt aataggacca
     5641 tttgaaaagg cagatattgc agtagaactt gctaaaatcc gtaaggatat tgcaaaagat
     5701 gctttttctt ttactttaaa atgaaatttt tagcagttat aggcgatcct atttctcact
     5761 ctaaatcgcc tagaatgcat aataatgcta ttaaagcctt agggcttgat agcatttata
     5821 cacgctatca tttaagaaat gctaactgtt taagagaaga tttttttaaa ttaggactta
     5881 gtggagctaa tattactttg ccttttaagg aaaaagcttt agatattgct gatgtgaagg
     5941 atgattttgc tagaaatatt ggctctgcaa atactttatg cttaaaagaa gataaaattt
     6001 acgcttataa tactgatgct ttaggttttt tagaagctat taaggatttt gataatataa
     6061 aaaaagcttt gattttgggt gctggaggta cagctttggc gcttgcttat gcattaaaac
     6121 aaaaaggcgt agaagtgtat atagctaatc gtagtaaaaa aagatttaaa gattttttag
     6181 cttatccaac ttatctttat aaaaacttgc aagattttga ctttgatttg gttataaatt
     6241 caacttctgc tggattaaaa gatgaaaatt taccttgtga tagagagctt ttagatagaa
     6301 ttttacctaa agctaaattt gcttttgagg taatttatgg cagagaaaca cctttttata
     6361 gattgtgtaa agagtatcat ttaaaaatta aagatggact tgatatgctt ttatggcaag
     6421 gagtttttgc ttttgaactt ttttttgaaa tacaagataa aagagagatg ataaaaaatg
     6481 caatgcaaca ggcattgatt ttaaagtaga atgatagtta tttttcttgt ataagaaaat
     6541 cttatttttt gtgtgagaaa gtttaatttt cccacaagtt ttatcattca aatatttcta
     6601 ccccatcttg atttttactt tgattatttt gatttgttga agatggattt gtaggaatat
     6661 tttgtgtagg cgtgttttca attgtattat tttgattaga atttgtttga ggtaagcttt
     6721 cttcaaaggt agcatcgcca tcaaaactat taaaaccact gtttgtatta ggtatagttt
     6781 tgcctatgtc tgttgctttt ggtagattgt tataaagtgt atttaatgta tttttataaa
     6841 aagctaaaaa acttttatca atttcaaaag caggttgctc taaaccttta ttgagttgag
     6901 ttggtacggt agagatagta gttttaaaca tattaacccc atcatcattt ttaataggat
     6961 agttaagcgc aactaaagaa tctagtttag tgttacttga aagattagtt gaattttgtg
     7021 gattgtgtgc atctataaaa tctattttac ctttaaaatt tatacctaaa ttggatttta
     7081 cataatctcc actcataaaa ttgcttgttt tttgtgcatt tttttcttcc gtataaatac
     7141 tgattgaact tttaagagtg tagtctggat tagtagtaac tattttatag ccttttagtt
     7201 gagcgatggt tttgatctgc tcttctaaat tttgttttaa aagatcaatt tctttttcta
     7261 tgcgaatttt aagcactgaa ttttcaaaat aatcagaata attgttattt tgttctatat
     7321 taataggctc aagagcaatg cttactccag aatcaatagg ttcaaccttt gttggaactt
     7381 ggggtttaaa atttggcata gaaacattga caaaattact gcttgtaccc ccacaagctg
     7441 ctaaaattaa catactacta gcaagtaaaa tatatttttt cattttttac ctttatttaa
     7501 tgtgtttgtg ttaattatag caagttaaag tttttttgtt atatttttat aaaagaaaat
     7561 taggaaagat atatggaatt ttggcagcat atttattcaa attttaatgt tatagctttt
     7621 agcatctttg gtttaaaggt gcattggtat ggcattatgt atgttatagc tttgcttttg
     7681 gctttgcttt tggctaaatt ttttgtaaga aaatttcaac tagacattaa tgaaaaacat
     7741 ttggatagtt attttatatg ggttgaaata ggggttattt taggtgcaag gcttggatat
     7801 attttgattt atgatgcaaa tactatgtat tatattactc atccttggca aatttttaat
     7861 ccttatatta atggtgaatt tgtaggtatt cgaggtatga gttatcatgg agcaattata
     7921 ggatttttga tagctacttt attgttttgt aaaaaatata aaacaaatcc ttggattttt
     7981 cttgatttgg ttgctttaag tgttccattg gcttatgttt ttggtcgtat aggaaatttt
     8041 ttaaatcaag agctttttgg tcgcattaca aatgtgcctt ggggaattta tgttgatgga
     8101 gtattgcgcc atccatcgca actttatgaa gcatttttag aaggtattgt tgtttttatt
     8161 atagtttatt tagcaagatt taagcaaagt tttcaagggg aattgattct tgtgtatgct
     8221 ggtgcttatt cattggcaag atttatatgt gaattttatc gcgagcctga ttttggtata
     8281 ggttttgttt tatggggtat gagtatgggg caaattttaa gttttataat gtttataaca
     8341 gctttgttag tttatatttg tataaagttt aaaaaagtaa atatttaatc tatcttaaag
     8401 acttttgtaa tataatgaaa tggatttttt taatttcttt ttacaaagga gtaaagatgc
     8461 gtgagcttat cgaaggttat ttgggtaaga gcattgaggg caaaaaaagt aaaatgcctg
     8521 cgaaattaga ctttatccaa agcgcctcag ggcttttttt aggtcttttt atgtgggtgc
     8581 atatgctttt tgtttctaca attttagtca gtgaggattt ttttaattct gtggtacatt
     8641 ttttagaatt aaaatttgtt tacgataatc ctgttatgag ttatcttact tcatttttag
     8701 ccgcctgtgt tttagtggtt tttttcgttc atgctttact tgcaatgaga aaatttccta
     8761 ttaattaccg tcagtatcaa atactaagaa cacacagtaa aaaaatgaat cacagcgata
     8821 cttcgttatg gtgggttcaa gcttttacag gttttattat gtttttctta ggttctgctc
     8881 atcttatttt tattgtaacc aatgcagata aaatcagcgg cgatatgtca ggagataggg
     8941 ttgtaagtca ttttatgtgg cttttttatg ctgttctttt agtctgtgtt gaacttcatg
     9001 gaagtatagg gctttataga ctttgtgtta aatggggttg gtttgaagga aaaaatgtaa
     9061 aagaaagtcg caaaaagctt aaaactgcta aatggataat cagtattttc ttcctagttt
     9121 taggtgtgtt aagtcttgca gcatttataa aaataggtta tgaaaactac caaaatcaaa
     9181 cccaaactac tgcgatgata aaaaactaca atggagcaaa ttatgaatat acaatatagt
     9241 gatgctttag taataggcgg aggattagca ggtcttagag cggctattga agtagcaaag
     9301 agtggccaaa gtgtaacact tttaagtatt tgtccagtga agcgttctca ctctgcagcg
     9361 gtgcaaggag gtatgcaggc aagtttagca aatggggcaa aaggtgaggg tgataatgaa
     9421 gatcttcact tcgcagatac agtaaaagga agtgattggg gctgtgatca agaagtagca
     9481 agaatgtttg ctcaaactgc gccaaaagca gtgcgtgagc ttgcggcttg gggtgtgcct
     9541 tggactagag ttactaaagg tccaagaact gttgtaatca atgcacaaaa aactgtgatt
     9601 gaagaaaaag aagaagcgca cgggcttatt aatgctagag attttggcgg aactaaaaaa
     9661 tggagaactt gctatatcgc agatgcaaca gggcattgta tgctttatgg tgtagcaaat
     9721 gaagctatta aacatcaagt aaaaattatt gatagaatgg aagcagtaag aattatccat
     9781 gatggtaaaa aatgcttagg tgtgattgct agagatttaa ccaatggaca actcattgct
     9841 tatatcgcaa gaggaactat gatagcaaca gggggctatg gtagaattta taaacaaact
     9901 acaaatgcgg taatttgtga aggaacaggt gctgctatcg ctcttgaaac gggactttgt
     9961 agactttcaa atatggaagc agtgcaattt cacccaactc ctattgtacc aagcggtatt
    10021 ttgcttactg agggctgtcg tggtgatggt ggaattttac gtgacgtgga tggatatcgt
    10081 tttatgcctg attatgaacc agagaaaaaa gaacttgcaa gccgtgatgt ggtaagtcgt
    10141 agaatgatgg agcatattcg caaaggtaaa ggtgtaaaaa gtccttatgg ggatcattta
    10201 tggcttgata tttctatatt gggtcgtgct catgtggaaa aaaatctccg cgatgtacaa
    10261 gatatttgca aaactttcaa tggtattgat ccagcagatg aaggtccaaa aggttgggcg
    10321 ccagttcttc caatgcagca ttattctatg ggtggaatta gaactaaacc aacaggtgaa
    10381 agtcaatggt taaacggact ttttgcttgt ggagaagcag cttgctggga tatgcacgga
    10441 tttaatcgtt taggtggaaa ttcatgtgct gaaaccgttg tagcaggtat gatagtggga
    10501 gattattttg cagattattg taaaaataat ggtgaagtaa ttgacacaaa tgtagtaaaa
    10561 gacttcttaa ctaaagagta tcaatattta aaatctttag tagataaaga gggtaaacat
    10621 aatgtttttg aaatcaaaaa tagaatgaaa gaaatcatgt gggataaggt agccatcttt
    10681 agaacaggtg aaggtttgaa agaagcagta gatgaacttg aaaaacttta taaagattct
    10741 caagatgtta aagtacattg taaagaactt gattgtgcaa atccagagct tgaagaagcg
    10801 tatagagtac caagaatgtt aaaaatagca ctttgtgtag cttatggagc gcttttaaga
    10861 acagaaagtc gtggggcgca ttatagggaa gattatccaa aaagagatga tttaaattgg
    10921 atgaaaagaa ccaatacttt ttgggtagaa ggcgaaacct taccacgcat agaatacgaa
    10981 gagcttgata ttatgaaaat ggaaattcca ccagcattcc gtggatacgg agccaaagga
    11041 aatattatag aaaatccttt aagtgaaaaa cgccaagctg aagtggatgc aatacgtgaa
    11101 aaaatggaag ctgaaggcaa aggtcgttat gaaattcaaa acgctttaat gccttatgaa
    11161 ttacaagcta aatataaagc accaaaccaa agaataggag ttgattatga gtagaaaatt
    11221 gacaataaag gcatttaaat ataatccttt aagcaaaatt tctaaaccac attttgtgac
    11281 ttacgagctt gaagaaactc cttttatgac ggtttttgta tgtttgactt tgattcgtga
    11341 aaaaatggat gcggatctga gttttgactt tgtttgtcgt gcagggattt gtggatcttg
    11401 tgcgatgatg attaatggag tgccaaaact tgcttgtaaa actttgacta aagattatcc
    11461 tgatggagtg atagagctta tgcctatgcc tgcatttaga catattaaag atttaagcgt
    11521 gaatacagga gagtggtttg aagacatgtg taaacgcgtt gaaagctggg tgcataacga
    11581 aaaagaaact gatatttcta aacttgaaga acgtattgag ccggaggttg cggatgaaac
    11641 ttttgaactt gatcgttgta tagagtgtgg aatttgtgta gcttcttgtg caactaaact
    11701 tatgcgtcca aatttcatag ctgctacagg acttttaaga acagctagat atttacaaga
    11761 tccgcatgac catagaagtg tggaagattt ttatgaatta gtgggcgatg atgatggtgt
    11821 ttttggttgt atgtcattgc ttgcttgcga agataattgt cctaaagaat tacctttaca
    11881 aagtaaaatc gcttacatga gaagacaact tgtcgctcaa agaaataaat aaatctttcc
    11941 cctttttaag gggaagatta tgaaagaatt attccaaaaa atttggcaaa atgaacttca
    12001 atttttaaat tttgatgcta aatttcaaga taaaaacaaa cttaatacgg ccgagtgcgc
    12061 gattatttta agtgtcaata aagacaatta tgaaagatat tttctcttaa aagaatttca
    12121 agagctttgc aaaaaaattg attcaagagt ggatattttt agtatacaaa atgctcaaat
    12181 ttgtatttta aattttttta aatcaggttt tatttcaaag caagatttgc ttaaggctct
    12241 aaaaatttta gaaaaaattt caaaaaatac cgaaatgctt gattttattt cacaagaaaa
    12301 agttcaaagt atagatcaaa aagctttatt tcaaaatgat tttaaagaat taaacaccat
    12361 taatttagag cttcaaaagc taagttttga tgaaaattta aaatcaagac ttcaaaaaac
    12421 tttggaaaaa tttcaaaatt tagagtttaa tatagccatc actggcgtga tgaatgcagg
    12481 aaaatcaagc cttttaaatg ctcttttaaa agaagatttt ttaggcgttt caaacatacc
    12541 tgaaacagct aatttaacag tattaagtta tggtaagagc gaagaagcaa agatatattt
    12601 ttgggataag aaagaatggc aaaatatact tgaaagttcg cactttaatg cagatttaaa
    12661 agaatttatt gataagctgg ataagagtgt aaatatagag gattttatca aggataaacc
    12721 tttaatacaa aatatcgcac tttgtgaact taaaaatttc agttcagcta aaaataacat
    12781 ttcagcttta attaaaaaaa tagaaattaa aagtcattta gaatttttaa aaaataatat
    12841 ttccatagtt gatactccag gacttgatga tgttgtagtt caaagagaaa ttgttacaaa
    12901 tgagtatctt agagaaagtg attttttaat tcatttaatg aatgcttctc aaagcttgac
    12961 tcaaaaagat gcagactttt tggtgcattg tcttttaaat tcaaggctga gtaagttttt
    13021 aattgtttta actaaagcgg atttgttaag caaaaaggat ttagaagaag tcattgttta
    13081 taccaaagaa agcttaaaat caagacttgt ggatttagat gaaaatttgg tggaaaagat
    13141 tgatttttta tgtgtgagtg ctaaaatggc aagtgatttt tataagggtt tagcacctaa
    13201 ggaaagtttg caaaaaagtg gtatgcaaga atttgaaaac tatcttttta acgagcttta
    13261 tgcaggagaa aaaagcaaga ttgccttaag agcttacaaa aaagaattac agttggaact
    13321 taaaaatatt ctaagcaaat atgaaatgca aaatcgtctt attaaggaga ataaacaagg
    13381 tgtaagtgaa gaaaatcaaa agcttttact tgaacttcaa aagcaaaata tcttattaaa
    13441 agaagcacaa gatgaaattt caaattccat tgtaaaactt aaaaatatag ataatggtat
    13501 agataatctt gttttacttt tggctaaaaa attaaaagaa cgcttgatag atgagtttaa
    13561 atatttgaaa aataatgcac aaaagcttaa tctttctcgt attttaaata tagttgatat
    13621 taccacaaaa gatgggatta atgatatttt aagagaaatt aaatttgaaa atattaaaaa
    13681 aatcgaggag cttaaaacaa atttatcttt aaaatatgat tttttaaaag atgattttga
    13741 taatggtttt gaaggtttta aagatggaat ttcaaaaaat atagatagta tttttcaaag
    13801 cgaaaaattt gcacttttaa gattgaaaat tgaaaaatta agcaatctaa aatcagattt
    13861 atatgagctt gaaacgaatt t
//
LOCUS       DAPIWU010000042        13802 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.042, whole genome shotgun sequence.
ACCESSION   DAPIWU010000042 DAPIWU010000000
VERSION     DAPIWU010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13802
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.042"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..595)
                     /locus_tag="RJ285_000957"
     CDS             complement(<1..595)
                     /locus_tag="RJ285_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HDV7383753.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHIFSKENHYLIATLSNPFFIDIKKDLESN"
     gene            complement(595..2403)
                     /gene="typA"
                     /locus_tag="RJ285_000958"
     CDS             complement(595..2403)
                     /gene="typA"
                     /locus_tag="RJ285_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDV7383754.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2538..2861
                     /locus_tag="RJ285_000959"
     CDS             2538..2861
                     /locus_tag="RJ285_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383755.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDENEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILTALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            2877..4670
                     /locus_tag="RJ285_000960"
     CDS             2877..4670
                     /locus_tag="RJ285_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7383756.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSTTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDQKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQ
                     DQNKNLKNNDQNLNLDKNLNKEIVKDTQNLVSNLTQKDFNLNKESKNNNKENKDIKQN
                     FFDQKLNFENLNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNS
                     LVKDLNKVTQNNARNITPKETLQHFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVT
                     LIQRGNNLHINFNSNTNAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQG
                     KNRSGYGFKDALDGKNESEKVNLELVLAKYF"
     gene            4723..5607
                     /locus_tag="RJ285_000961"
     CDS             4723..5607
                     /locus_tag="RJ285_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HDV7383757.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            5611..7248
                     /locus_tag="RJ285_000962"
     CDS             5611..7248
                     /locus_tag="RJ285_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDV7383758.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(7252..9123)
                     /locus_tag="RJ285_000963"
     CDS             complement(7252..9123)
                     /locus_tag="RJ285_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDV7383759.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKLVKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(9124..9846)
                     /locus_tag="RJ285_000964"
     CDS             complement(9124..9846)
                     /locus_tag="RJ285_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7383760.1"
                     /translation="MEIKWSRDFSINSVQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSDNI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKALHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGG"
     gene            10031..10128
                     /gene="ffs"
                     /locus_tag="RJ285_000965"
     ncRNA           10031..10128
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="RJ285_000965"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            10284..10913
                     /locus_tag="RJ285_000966"
                     /pseudo
     CDS             10284..10913
                     /locus_tag="RJ285_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790738.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
     gene            10934..11278
                     /locus_tag="RJ285_000967"
     CDS             10934..11278
                     /locus_tag="RJ285_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7383761.1"
                     /translation="MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWCFIFSLR"
     gene            11221..11436
                     /locus_tag="RJ285_000968"
     CDS             11221..11436
                     /locus_tag="RJ285_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7383762.1"
                     /translation="MFITATAPNPLVLYFLSPLEIKSTPNASTFAKDKLKELVKMKNS
                     EKIILSVFVSLLLLWAGALGLFFWNFS"
     gene            11375..11614
                     /locus_tag="RJ285_000969"
     CDS             11375..11614
                     /locus_tag="RJ285_000969"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7383763.1"
                     /translation="MSRFYFYGLELWACFFGISLDATSVALLGLSLVLISGVLTFGEV
                     LAEKAAWNTLVWFSALVMMATLLGKLGVTQFLAEA"
     gene            11737..11958
                     /locus_tag="RJ285_000970"
     CDS             11737..11958
                     /locus_tag="RJ285_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7383764.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYATGTAPVIFGT
                     GYVTLKKWWSIGFVISIVDIVVMIAVGLV"
     gene            complement(12010..13026)
                     /gene="mnmA"
                     /locus_tag="RJ285_000971"
     CDS             complement(12010..13026)
                     /gene="mnmA"
                     /locus_tag="RJ285_000971"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDV7383765.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQKDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(13026..13631)
                     /locus_tag="RJ285_000972"
     CDS             complement(13026..13631)
                     /locus_tag="RJ285_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HDV7383766.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
BASE COUNT         4619 a         2077 c         2155 g         4951 t
ORIGIN      
        1 aattgctttc taaatctttt tttatatcta taaagaaagg attgcttaaa gtagcaataa
       61 gataatgatt ttctttagaa aagatatgat ttaaagtgaa atttttatct tgaagtttga
      121 tataaatttg ctcttcattt tcaaagctag gatttttgtt tgcacttaaa atttcgagca
      181 aaattccgca aaaaaagcgt ttattttcgt ccaaaaactg aatatcataa attttaaaat
      241 ccttaaattc aaagcagttt tgacttttaa attctttcaa atcctttgta agtcctaatt
      301 ttaaaaagtc tttttggctt aaactttgct ttttaaattt tgccccaaaa cgacgcaaaa
      361 ataaatttaa agcattaatt tgtaattctt tttgtgcgag ttttagtttt ttggctgtaa
      421 aacgaaagaa aaaaacacct acaaaaacag ctaaaattac tgcgattaag gcatctctta
      481 taaaaacaaa ggctaaaaaa cctacaagta aggcttcgat aatgcttagg aattttaaga
      541 ttcctaagcg tttaagtata taaagtctat tattttctaa gctttttaaa tccattaaga
      601 ttttgctttt tccattcttt ttctttgagt tgggtcaaga tagcgtttgc gaacacgcac
      661 atttacaggt gtaacttcta caagttcatc ttcttctatc cactctaaag ctctttcaag
      721 acttaatttt ctaggtggca caagtttgat tgcatcatcg cttccacttg ctcttacatt
      781 ggtaagattc tttcctttga taggattaac atctaaatca tttggacgag agtgctcacc
      841 tataatcata ccggtataaa ctttagtttg aggctctatg aaaagtactc cacgctcttg
      901 aaggttaaac aaagaatacc ctaaagccac gccattttcc atagaaatta acgctccatt
      961 attacgcttt tcaaccgcac cgctaaaagg acggaattct aaaaagctat gattcatcac
     1021 gccttcgcct ttggtatcag ttaaaaactg acttctaaaa cctataagtc cgcgtgctgg
     1081 aatttcaaac tcaagtcttg tttgtccatc gcctgttggc gccatggttt tcatttcagc
     1141 ttttcttttg ccaagttttt ctattaccgc accgctaaat tcttcaggca catcgataac
     1201 taaatgttca aaaggttctg ttttaactcc atcttcaact tttacgataa cttcaggtct
     1261 tcccatacaa aactcaaaac cttcacgacg catattttca gctaaaatag tgatttgaag
     1321 ttcgccccta ccgcttactt taaatttgcc ttcgcctgtg ctttcgtatt tcatagcgat
     1381 attagttttc atttcagctt ctaagcgttc agcgatttta tttgaagtta catgttttcc
     1441 ttcagttcct gctaatgggc catcatttac agaaaatact atacttaaag tcggctcttc
     1501 aatgtgcaaa ggatcaagtg gcataggatt gtttggatct acaacgctat cacccacatc
     1561 taaagcttca aaacctgcta tagctacgat atctccactt cctgcttctt caatatccat
     1621 tttttctaag cccataaagc caatgagttt tgaaattcta ccatttactt tggtgccatc
     1681 agcttttgca agcattacgc tttggttttt cttcacaacc ccattgaaaa ttctagcaat
     1741 gcctatttta cctacaaaat tatcataccc taaagtgaaa acttgaagtt gtaaaggatt
     1801 gtcatttgtg ccacttggtg ctggaacgcg ttcaagtatg gttttaaaaa gtggctccat
     1861 attatcactt tcatcgttta gatcaagctt agcataacca ttttttgctg cagcataaac
     1921 tatggcaaag tcaagttgct catcgtttgc atctagggct acaaaaagat caaaaatttc
     1981 attgatcact ctttcaggat cagcagctgg tttgtcgatt ttgttgatta caactatagg
     2041 tttaagccct aaagataaag cttttttaac cacgaattta gtttgtggca taacgccttc
     2101 ttgagcatcc accaaaagca aaactccatc aatcattttt aaaacgcgtt ctacttctcc
     2161 gccaaaatca gcatgccctg gagtatctat gatgttgatt tttgtacctt tgtaattgat
     2221 cgctgtgttt tttgaaagta tggtaatgcc acgttctttt tctatatcgt tgctatccat
     2281 aacgcgttct gaaatttgtt ctctttcgct aaaggtgcct gattgtttta ataattcatc
     2341 taccatagtg gttttaccat ggtcaacgtg agctataact gctatatttc taatgttttc
     2401 caaattttct tctccaaagc taaattttta aaagcttaga ttatacaaaa atttaactta
     2461 aactacaaag catcaaaact tggaacactt cttgctttaa agacttgtga aattaaaatt
     2521 ttaaaaagga agttaaaatg tcaaaaccat taaatgaaga gatttttatt gaatttaaaa
     2581 gcgatttagc tgagagaaaa aatgaagttt tgcttcaagt tttagagctt ttagaaactt
     2641 ttagatcaga tgaaaacgaa aaaatggcaa gaatttcaag tgagcttaca gaaattttag
     2701 aaaatgaaga aaatttagag aaaattttaa atgctaaaaa tttagaagag cttttaaata
     2761 tcttaactgc tttaaatgaa gataagatga ttaaagtata tgaagattct tatttgaaag
     2821 aaaaatttcc taatgtaatg gtagataaat ttttaaaata attttttgaa ggaaaagtga
     2881 tgtcaaattt agctccgcaa aatgatgttt taaatcttac gccgagtaaa acttctacta
     2941 ctagcagttc ttttagtaaa actagtaaaa ataaagaaca tgaaagtagt gatagtaaaa
     3001 attcaactca agatgatacg gaaagttttt taaattcttt gcttaattct atcaatgaaa
     3061 ccaatgaatt tttacctgat catatgaaga tcagtcaaaa agaagttgtt aatgaagcga
     3121 tgagcagact tcaaaaagga gcttttgatg agagcgataa gataagcatt ttcgaatctg
     3181 cttcttttat gcaaattctt tctttgttag ataagctaaa aacagataca gcagatgtta
     3241 aactagcaaa tctttctact caactttcaa gtcttattaa aacagaggct aattttaatg
     3301 ctttaaaagg tgcatcaaat cttagtgagc ttttggacat agctaaagat ctgggcttaa
     3361 atgtaaaaaa tattaaagta gatcgtcttc ttgatcttaa agcaactttt ccaaatttag
     3421 ataaggctga tttttttaag ggtgctgtgg ataatgtttt taaagaaatc atcaataata
     3481 aaatttccaa tgtgagtaaa aatttaaatc acaatttaga aaatacaact catactacaa
     3541 gcactcattc tatgcaaaaa acaaattcta aagatagcgg ttctttgctt tctcaaactt
     3601 taaaaaattt agattccata ctttcatcca aagaaagcaa acacgaaaaa aacgataaag
     3661 ttaaatcaaa aatagaagaa gataccacag atgctaaaaa tactttaaaa aatatcaaaa
     3721 atgatgagtt tgcaaaaaat ttaacagaag agttaaatat aaaagatcaa aaaaaccaag
     3781 ataatttaaa taaagaaagc aaagacttaa acaaagattt taataaagag ttaaataaaa
     3841 atcaagaaaa aaacaattta aatcaagaaa atatacaaga tcaaaataaa aatttaaaga
     3901 acaatgatca aaatttaaat cttgataaaa atttaaataa agaaattgtt aaagatactc
     3961 agaatttagt ttccaattta acacaaaaag attttaatct aaataaagag tctaaaaaca
     4021 acaacaaaga aaataaagat ataaaacaaa atttctttga tcaaaaatta aattttgaaa
     4081 atttaaataa aactcaagta gttcaaaaca aagagaataa tgcaaatttt aataacaata
     4141 ctactaataa agaaactttt actcaagagc aaacaaaaac gcacagtgaa aatgtagata
     4201 aaaatagttt agatgagtta aattctttag tcaaagactt aaataaagta acacaaaaca
     4261 atgctcgcaa tatcactcct aaagagactt tgcaacattt ttcacaagat ttaaaagagg
     4321 ctgtagatca atataaagcg cctattacta aacttagcat cactctaaat cctaataatc
     4381 ttggagaagt ggaggtaact ttgatacaaa gaggcaataa ccttcatatc aatttcaact
     4441 ccaataccaa tgcaatgaat ttgtttatcc aaaatcaagc cgagtttaaa aattctcttg
     4501 taaatatggg atttactgga cttgaaatga attttagtga tcaaggtaaa agagagcaaa
     4561 atcaaaatca aggaaaaaat cgtagtggat atggttttaa agatgcttta gatggaaaaa
     4621 atgaaagtga aaaagtcaat ctagagcttg ttttagcgaa gtatttttaa ttggaacact
     4681 tattgcttaa ataataaaaa actaaataaa aaggagttta taatgatatc atcatcggat
     4741 tggaatttaa ataccactgc tacaacttca ggtactactt cttcaggaag tactagtgga
     4801 acaactagaa cagattcaag cagtagctca ggaatagtga gcaatccaaa cgctacctta
     4861 gataaggatg cgtttttaaa acttcttttg atagagcttc aacatcaaga tccaacagat
     4921 cctatggata gcgataaaat gcttactcaa acttcgcagc ttagcgcact tgaaatgcag
     4981 caaaatacca atacaactat gcaaaaaatg gttgaaacta tgcaaaagct ttctgattct
     5041 tttagtacaa gtatgagtac ttcagcttta ggggctattg gtaaaatggc aactgtttca
     5101 gataataaaa tcaaacttac aggtgcagat gagcttatcg ctcttaaaat gtatttgcct
     5161 gaagattctg atgaaaacgg tgttacgcta gaaatttatg atagcaataa taaacttgtt
     5221 ttcagtgaaa aaagcgatgc taaatctatt tctcaaggtt tatttactat ggagtggcca
     5281 ggaagaaata acgatggggt ttatgcaggt gatggtgagt acactgttaa aatggtttat
     5341 aataataaaa atggtgaaaa aatcactgca aattacggaa cttatcctat cgaaggtgtt
     5401 gtttttaaag atggtgttgc ctatgcaaaa atggctggac aagaagttcc ttttgatgca
     5461 atacaagaaa taacagatta taagcttggt tcatcttcat ctactggagg aagcggttca
     5521 agtggagact caagtggtgg ttcaagcgat ggagattctt ctgggtctgg atctacagaa
     5581 gatggcgaca aagaggaaaa ggcataagcc atgatgaatt cattttataa tgggatttct
     5641 ggagtaaaaa gcaatagctt tggtattgat atcactgcta ataacatagc aaatgtcaat
     5701 accacgggct ttaaatactc tgatgctcaa tttaaagata ttttttatac taccataaca
     5761 acccaatcaa ccaaccctgc tcaaggtggt tatggtagcg gtgcagcatc ttctcaagtt
     5821 gttttcgaac agggttctcc tgttgcaagt gatggcgaat ttgatgtggc tttgcaagga
     5881 aaaggatttt ttggggtttt aggggctgat ggcaatgctt actatactag aaatggatca
     5941 tttagaagag atgccaatgg atatttggta gattcttatg gaaattttgt tttaggaaca
     6001 atgaatcctg cttttactgg tattaactat agcgatagag ttgctgggct tatgggggat
     6061 tatcttaaca caggaactcc ggtaaataat ggttttactg taaattcaaa taattctttc
     6121 agtataggca caaccgcttc tcaaggggct attaaagtac ctgtgaatat gtatttacct
     6181 cctcaagtaa ctcaaaatgt aaaatggagt ggaagtttaa atactaacac aacaacagaa
     6241 gtagttaaag tagatcttga tcctagtaaa tttaacatta caaaaactga agatggaaaa
     6301 tatgtagtta gtggtagtgt tagcaaagaa gatgtgttta gtgctaaagc gggtgatagg
     6361 attattttaa atttcactga tgataatggc gtaaaaacaa gctttgaagc gactttagat
     6421 gaaaatctaa attttaaaag taacgagctt gatttaaaag gattggatga aaatagcatc
     6481 aagcttgata cagctcaaat ttcaacagag caacaaaaag ccaataaaga tattttagaa
     6541 tcccctattt ataatgcaga tggaagtaaa agcactttaa gggttacact tgaaagagtt
     6601 ttaccgcaag aaggcgataa tatacaatat aaagctattg cacaaattta tgattctaat
     6661 ggcaatgccg taggcaatcc gactgaagga aatatggttt ttgataaaaa tggtgctttg
     6721 cttcaaaaca atattacaag cattgcaaat ccaaatggtg gaacaattaa tattgattta
     6781 ggttctcctt atgatgctaa caagcctggt tcgggttata gtgggattta tattaaacaa
     6841 ggcgtcgaaa aaaatgtagt tacacaacaa gatggtgtag ctgaagggtt ttttgaacaa
     6901 tataatatat ccgatgatgg aagtattgtt gcgcaattta gcaatggtaa aaatgctata
     6961 gttggaaagc ttgctttata taattttatc aatgagcaag gattagttgc tatgggagat
     7021 aatatttttg cagcaacggc aaatagcggt gatgcaagtt ttattatgaa agatggtcaa
     7081 gttgttaata cagctaaatt taaaggcgga ttcttagaac aatcaaatgt tgatttaagc
     7141 gcagagcttt caaaccttat cgtaactcaa aaagcttttg atgcaagctc aaaaagtatc
     7201 actacaagtg atcagatgat acaaaaagcc attaatatga aaagataatt cttaggaatt
     7261 atctttttct aatttttcaa aaataatttt aatttcttct atgtcgcttt cgctataatt
     7321 atggcttgat ttaatataac ttacttgctg tcctttttca agatataaaa ccttttcata
     7381 gtcttttaaa tttatatgat gttttagttc aaggttggtg tttgtgttag gataaaattt
     7441 taaaaaatta tcctctccga tattttcggc ttttatgtat atttttacat tgtaaaccat
     7501 ttcatttaag aaatttaatt ttgcatcaat ttgatatttt aattttacaa gttttttata
     7561 cgaaatgcta agatgattgt atttttttat gatatcgtga taaagatttg aaaatttcat
     7621 ttctatggcg ctaggatttt tagtcttttg aagtttgatg attttgattt gatttttgat
     7681 tagataatca tagtaatttt gcattttgct tatggtgtca tcaagcttac tttttatttt
     7741 aaggcttaga tttttaagat tttcgcattc tgtatctgag ttgttttcaa tagaaactag
     7801 tggtgaaact acgatattgt ttttaaattt tatattgttt gttatgatta gattttttct
     7861 tggatataaa gtattatccg ttagtaaatt gcaaatataa atattttctg cttctatttt
     7921 tccacccatg cagttttcaa caaatacatt tttagctata attgtcccat tttctaaatt
     7981 ttttatatat acagtgtcag cttgcaaagt tcctttgtgt gttgtaataa aaatatcttg
     8041 tgcaaaaatt tcgctttttg catgagttaa gcctttgata ctgatatttt ttccataaag
     8101 ttttgttgct ccaacattcc catttacttt tatatttgaa gcttgaacat ttacaatacc
     8161 tgatttaata gcatcatcac ttatatcaaa attagtgatt tctaagttta tattttcatc
     8221 ggtatttgtt ttgattgaac cggttgtttt aagccctatt tgtgataatt ttaaattatt
     8281 tgcgatacaa tatcctgtat gatctttgtt taaaaatcca taattggcac taaaatattt
     8341 aattctatct tctaattctt ctgtgtaaat gctttcatct tttatgataa aaggattatc
     8401 aagaaaggct attgggttta aatgaagtat ctctcctctt aaatttcgtc cttcttttcc
     8461 aagaattcta taaatgtatt caaaaagtag ctcatttttt tcaataggtt tacagtagtt
     8521 tccttcatca tagttaatat tttcgtcaaa acattcttcg ttaacatctc tatgataaat
     8581 aatttcatca cttttatgtt caatcttatc tacacctttg gcaatttcaa gctctatttc
     8641 tttaatagat ggactttttt gtattgataa gataaaatca tcaatcttgt caaataaatt
     8701 tttatcaagt cttaagatta aaaatttttg tttgatcatt attttgtaga tattttgcaa
     8761 aatatcaaat tttaaattag gataatattt aaaattttct gtaaggttga tactggcttt
     8821 tagatgggtt aggttggagt tggatctaag tttgactgta aaaggaaaac tttgggtttt
     8881 tgggtaaatt tctataagaa atttttgcac tatggtattg tagtttttta caaaaaaatc
     8941 atctgcataa aataagtcaa aatcctttct ttcataagtt tttgtttttg ctggttttac
     9001 actagaacac agaagtttaa aatctataac tctaaaatca agaatttgtt ctgtgtttgc
     9061 ttgttcatga tttaaacttt caaaaggatt gaaagtttct aaggttttta cttgaaaatt
     9121 catctatccc ccccccccca tatcattttt ttgagtcgtg aaatggtgat tttgtagtgc
     9181 atcttcaaaa atagcattga atttttcgaa attttgattc aaatcaaaat aatccaaatg
     9241 aactaaaatt tgcccacatt tttcgcactt taaggtattt tctttgctaa caagctcttg
     9301 atgtatagtc tgtggaactg catggatacg caaagaacaa ttgcaaatat aatcatgagt
     9361 tttttcagct cttaggtctt gtttgattga ttttagtttt atgtattgtt ctaaggtata
     9421 atggatttct tgaaggtgta gggctttttt tgtaaaatta gctatccata aatcttcatt
     9481 agcaaaatga tctaaaatcc aatctttggt taatatggaa agttcttgag acatttttac
     9541 aatattatct gaatgctcta aaagctcttt agttttttct actaatattt gatgagattt
     9601 tttatgttct tcaatcaaag gaaaatcgat gctttccata aatttttctt catctttaaa
     9661 atgaattttg atgtattgaa atagctttac aagaatttgt tttaaatcat ttttgtgttg
     9721 tgtattatta tcttgaatgt ttagagctaa atcatttgca agattggtaa tttcaaaaat
     9781 tagttcgtgt tgtttgtcca attgcacact gttaatgcta aaatctctac tccatttaat
     9841 ttccatattt ttttccttta ctgtaataac aattaccctt tataatcgtc ttttttggaa
     9901 aataatataa taattttaca aatgaatttt taaaattctt taaaatacaa tggattgatt
     9961 gcaaatttat atattgaatc ttaacaactc aaggtttttt aagtatatta tgatataatt
    10021 tttgagcctt ttcttagacc tgtgcaatgc tatttttaag caccgcttca gggtgggaac
    10081 acagcagagc acttgatttt agtgtgtgcc gcagttatct ggggaagggt tttattcatt
    10141 ttaaaattcc catttttcaa ttaggctagc ttttttataa attaaaaatt tatttaaaaa
    10201 ttataatttt aagatttatt aaaatattag ttaattagaa tttaagcatt gtaaattaca
    10261 ttaccaatat caaaggataa acaatggata gaaagaaaat tcccttgttg gtgctgtgta
    10321 ttttaattgc agctgtgttt tggcttatac ctactccttg taggtttgga agataattct
    10381 tggcattttc ttgggctttt tattgctgtg attatggcag tgattttaca agtaatgcct
    10441 tttgggctgt ttgtatgata actattgcca tagtagctct tagcggcatt accactaccc
    10501 aaagttctgt gcgtgctaca catataaaaa ctcttgaggg aattgtttta agagataatt
    10561 ctaatatcta taaaacaact atggatgagg cagttgaagc cgctactttg caggctttaa
    10621 tcaatgctaa tataagtaga aatttaaaag caaaagttga tgaaatttta aaatcaagca
    10681 cagatgtaaa ttatcaaatt gaaaatctaa gtaaaattta caccaaagct acttcaaaaa
    10741 cttctacgca acaacttatt gatgagatta aaatttcagc tttaaatact tcagcacttg
    10801 attttttatc tcaaaagagt atagatgaaa aggtagatac tgctatatca aatttaaaat
    10861 ctaaaacggg tataaaagac gctttaagtg gtttttcaaa ttttcttatt tagcttatag
    10921 ttattctatt attgtggctc gtggagttat taaaacagga cttggagagc atttggctta
    10981 tcattttatc agtattcttg gtaaaaaaac cttaggtatt gcttattcta tagctttttg
    11041 tgaaactatt ttagctccag ttactccttc aaatactgca agagcagggg ctatcataaa
    11101 tcctatagtt caagttattg caagaagttt taaatccact cctgaagatg gaacacaaaa
    11161 taaaataggc acttatcttt ctttggtaaa ttatcaagag ccaatcctat ttcatcagct
    11221 atgtttatta cagctacagc tccaaatcct ttggtgcttt attttctctc tccgctagaa
    11281 attaaatcca cgcctaatgc ttctactttt gctaaagata aattaaaaga acttgtaaaa
    11341 atgaaaaata gtgaaaaaat cattctcagt gtttttgtct cgcttttact tttatgggct
    11401 ggagctttgg gcttgttttt ttggaatttc tcttgatgcg actagtgtgg ctttgcttgg
    11461 gttgtctttg gtgttgatta gtggagtttt aacttttggg gaagttttgg ctgaaaaagc
    11521 tgcttggaat actttagtat ggttttcagc tcttgtaatg atggcaactt tacttggcaa
    11581 acttggcgtt acacagtttt tagctgaagc ttaaggtgaa tttgcttctg ctatgggact
    11641 tggggaaatt tctattatga tatttttaag ccttgctttt tttatataca cactatttct
    11701 ttgcttccat tacagctcat atatcagcaa tgttttttgt tttttatagt gcagcttgcc
    11761 ttaggagcac caccactttt ttatgctttt attatgatag cttcaggtaa tgttatgatg
    11821 gcattaactc actatgcaac aggaacagct cctgttattt ttggaacggg ctatgtaact
    11881 cttaaaaaat ggtggagtat aggttttgtg atttccatag ttgatatagt agtgatgata
    11941 gctgttgggc ttgtttagtg gaaaatttta ggattttatt aataatttct aggaattaat
    12001 tcctagaaat tattctataa aaccacttgc tatgacttta tcatgatcat aaaagactgc
    12061 catttgtccg ctagcaagcc cataaacagg atcttttagg atgatttttg cacttttatc
    12121 ttcataaatt tctaccttgc aaggtgtgga ttttgaacga tagcggattt ttacttcgca
    12181 atcaagctct ttagcgtcta taaaaagatt gatatttttt aggttaaatt cactgatttt
    12241 aagctcttct tttgttccta cgatgatttg attttgctta ggattgattt ttaaaacaaa
    12301 atgtggttca tgtgccccac gcacttcaaa gccccttctt ttgcctatgg tatagtgcat
    12361 atagccctca tgtttgccta ccacttttcc gctactatct aatacttctc caggaatttt
    12421 tgtatccata aactgatcta aaacttgcac ataagtatct tcaacaaagc aaatttcaga
    12481 actttccttt tgagtggcaa aagattttaa aacctctata gtggaagcaa attttttcac
    12541 atcttctttt ttcatttcgc ctagcggaaa aataagatat tttaaagctt ctttatctgc
    12601 gctagctaaa aaatagcttt gatccttgct ttcatctacc gcggttttta ttaagttgtt
    12661 ttcaagtctt gcataatgcc ctgtggcaag tttttcacaa cctaaacttt tagcaaattc
    12721 taaaagtttt ccaagtttga taaagcggtt acataaagcg caaggatttg gtgttttacc
    12781 ctctttataa gtatccacaa aaggcatgta aactttgttt ttaaaatctt tttgtaagtc
    12841 taaaatatga taaggaattt gcaaaaagtt tgcaactttt tctacttttt tgatattttc
    12901 ttcgtggtaa tttggcttgc catgaagctt catataacaa cctataactt catgacctaa
    12961 atttttaagt ttataagcag tgactgtact atcaactcca ccgctcatag cgactagaat
    13021 tttcattaaa tttcctttaa agtattaatt ataaaatcta agtcgtcagt gattttatac
    13081 tttaactcat ctcctttaga aatcacttca agtttgagta aagaatttct gacgaactca
    13141 tcaaaacctc gccaaaattc actcccaaac aaaataatag gaacatcttt tttaaattct
    13201 aattgtttta atgtaagaat ttcacacaat tcatcaagtg ttccaaagcc gcctgggaag
    13261 atcacaaaag ctagactctt ttcaataaga gccattttgc gtatggctaa gctctcaaaa
    13321 gtaatattat attctacaaa atcattaagt ttttgctcat gaggtaaaaa tatattaaac
    13381 cctacagaac tcattgaatt tgtattattt ttttgtgaaa aagcaccttc gttggctgca
    13441 cgcataatgc ctccaccacc accacttatc acacaaaaac cattttgagc acatttttgt
    13501 gccaaaattt tagcctgctg ataataaaaa ttatcttctt ttaatcttgc agaaccaaaa
    13561 aaagttacgg cattttttag gtttggtatg ttagcaaatt tttctaaatc ttggcttatt
    13621 ttttcattca tttttcaacc tttagttaaa ataaattcca ttctagctaa aaatttataa
    13681 taagttcttt attatataag ttttaatagg tttattttat taagattagg aatttaaaga
    13741 cttttaaatc cttaagcttt aatatctata cttttttgtg cagtattttg agaaataatt
    13801 tt
//
LOCUS       DAPIWU010000043        13646 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.043, whole genome shotgun sequence.
ACCESSION   DAPIWU010000043 DAPIWU010000000
VERSION     DAPIWU010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13646
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.043"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            41..1291
                     /locus_tag="RJ285_000973"
     CDS             41..1291
                     /locus_tag="RJ285_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HDV7383767.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWFVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1306..2670
                     /locus_tag="RJ285_000974"
     CDS             1306..2670
                     /locus_tag="RJ285_000974"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDV7383768.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLC
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGVNAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2678..3199)
                     /locus_tag="RJ285_000975"
     CDS             complement(2678..3199)
                     /locus_tag="RJ285_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383769.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGAINLGLLFKQIRILKSFSKEEMK
                     EFLSLRMKKYTKV"
     gene            complement(3180..4190)
                     /gene="ribD"
                     /locus_tag="RJ285_000976"
     CDS             complement(3180..4190)
                     /gene="ribD"
                     /locus_tag="RJ285_000976"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDV7383770.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKNLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4396..4483)
                     /locus_tag="RJ285_000977"
     tRNA            complement(4396..4483)
                     /locus_tag="RJ285_000977"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4447..4449),aa:Ser,seq:tga)
     gene            complement(4505..4578)
                     /locus_tag="RJ285_000978"
     tRNA            complement(4505..4578)
                     /locus_tag="RJ285_000978"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4544..4546),aa:Cys,seq:gca)
     gene            complement(4597..4685)
                     /locus_tag="RJ285_000979"
     tRNA            complement(4597..4685)
                     /locus_tag="RJ285_000979"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4649..4651),aa:Leu,seq:taa)
     gene            complement(4695..4769)
                     /locus_tag="RJ285_000980"
     tRNA            complement(4695..4769)
                     /locus_tag="RJ285_000980"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4735..4737),aa:Gly,seq:gcc)
     gene            complement(4841..5593)
                     /locus_tag="RJ285_000981"
     CDS             complement(4841..5593)
                     /locus_tag="RJ285_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383771.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNTNANIAPR
                     MLNAKSDNIELSSPIISEKEQILSAKALFICK"
     gene            5666..6685
                     /gene="mutY"
                     /locus_tag="RJ285_000982"
     CDS             5666..6685
                     /gene="mutY"
                     /locus_tag="RJ285_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDV7383772.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCGICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYKFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6671..7930)
                     /locus_tag="RJ285_000983"
     CDS             complement(6671..7930)
                     /locus_tag="RJ285_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7383773.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFAIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
     gene            8096..8953
                     /locus_tag="RJ285_000984"
     CDS             8096..8953
                     /locus_tag="RJ285_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HDV7383774.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSRKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLGNYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDKPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLSD"
     gene            complement(8950..9756)
                     /locus_tag="RJ285_000985"
     CDS             complement(8950..9756)
                     /locus_tag="RJ285_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7383775.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFAQNLKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(9753..10529)
                     /locus_tag="RJ285_000986"
     CDS             complement(9753..10529)
                     /locus_tag="RJ285_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7383776.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGVISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKKFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(10529..11515)
                     /locus_tag="RJ285_000987"
     CDS             complement(10529..11515)
                     /locus_tag="RJ285_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDV7383777.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNAFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHAIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(11490..13622)
                     /locus_tag="RJ285_000988"
     CDS             complement(11490..13622)
                     /locus_tag="RJ285_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7383778.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGNKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSTYNHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQKGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSDPTQKGNSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDEISMMGTTAYQNGSGFEDTLTGISL
                     KNKLNYANNSYFIFGYEFTNHDAKRKSLVYYSVPGVINYHRMTTLMDMTKQSHSIFAL
                     DSHNFNEFFTLSGGARYEFSTYNTNRSYRNEMSMNGRPPSSNPIITDSTTLFDTDKNT
                     NNFAFEITPNFKYSDTGNLYLKYERGFVSPTPAQFVNRNKTGNGIPPYYSSNLKAEIF
                     DTFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVE
                     LSLSQNFLDDDLIFRESLTYLDAKISKGVNDGVRIPYVSKIKATAGLEYAWNKNFSNF
                     IDLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKR
                     YYTYQDSINDQYLVGNGRNYYVEFKYAF"
BASE COUNT         4583 a         2044 c         2197 g         4822 t
ORIGIN      
        1 taaaataaaa gagatgtaat cttaaattta aggaagaata atgaatactc ctaaatggac
       61 tagtcacgat acaaggtggg ttttatctct ttttggaaca gctattggag ccggcgtact
      121 tttgttacct attagtgctg ggcttggtgg attgatacct ttgttagtta tacttgtttt
      181 agcttttcct atgacttact tagctcatag aaatttatgt cgctttgtgc tttcaagttc
      241 taatccaaaa gatgatatta cttttgttgc agaaagttat tttggcaagg gcggtggatt
      301 tttaattaca cttttgtatt tttttgctat tttgcctatt ttattggttt atagtgctaa
      361 tcttacaaca actttgcttg agttcttaat caatcagttt aatttcaatg cagatcttac
      421 tcatgctgct cgttggtggg tgagtttttt gattgttgga gttttggttt tgatttctat
      481 tcttggtgaa aatgttgtaa caaaagcaat gagttttctt gtttttcctt ttattatatt
      541 tttatttatt ttttcattgc ttttaattcc acaatggaat ttatcgttat ttgcaaatgt
      601 tgatttttcc gtaatttcaa caagtaattt ttgggttact ttatggcttg ttattcctgt
      661 gatggtattt agttttaatc actctcctat catttcttca cttgcttgtt attgtaaaaa
      721 agaatatggt ggttatgctg aacctcgcgc tagaaaaatt atttctttag caattattct
      781 tatggttttt gttgtaatgt tttttgtttt ttcttgtgct ttaaccttta caccagaaga
      841 ttttgcatca gcaaaagatc aaaatatcaa tattcttact tttatagcaa ataaatttcc
      901 tgaagtttct ttactagctt atgttggacc tattgttgca cttgtagcta ttagcaaaag
      961 tttcttaggg cattatcttg gttctcaaga aggcttaaat ggtattttat ataaagcaag
     1021 taatggtaga attcaaggta aattcgctca aactttaaca gcgatcatta cctttgctat
     1081 cgcgtggttt gttgcgtata aaaatccaag tgttatagga attatcgagg ctattggtgg
     1141 tcctgttttg gctattttgc ttttcttaat gccgctttat tgtatttatc gttttgatat
     1201 tttggcaagg tttcgtaata aatttttaga tctttttgtt ttggtaatgg ggatagttgc
     1261 aatttctgct gcaattcatg atcttttata aattaaggat aaaaaatgag taatttaagc
     1321 atttttaaaa taggtgttgg cccttcttct tctcatactt tagggcctat gcttgctgga
     1381 aatttatttt gtaaaaaagt tgctaaaaag cttgatgaaa ttgatagagt tgaggttact
     1441 ctttatggtt ctttgtcgtt aacaggcaaa ggacacttga gtgataaggc tgtgatttgg
     1501 gggttaaatg gcttagaagc taaaaattta agtgcggcaa tacaagatga agtaaataaa
     1561 aatgctattg aaaatgctca aattgatttt tgtggtgaga aaaaactttg ttttaattat
     1621 gaaaaagatt tgatattttc caaagatttt ttacctttac atgagaatgg tatgaagatt
     1681 aaagcttatg attgtaaagg tgggttagtt gatgaggaaa cttattattc tgtaggtgga
     1741 ggctttgttt taacagctgc ggaattagaa aaaaaaggta aaaattctaa ccaaaataaa
     1801 aagaaaaaac tagatataga gcttaataac gctaaagaag ctttagagct ttgcgataaa
     1861 agagattggg atttagcaga gctttcctat cgttatgaat tgcaatttca cactaaagag
     1921 gaaattcgtg cttattgtct tgaaatttgg gaagtgatgc aagaagtgta ttataatggt
     1981 acgcatccaa atgaagatta tttacccgga aaacttcatt taaaacgtag agctaaaggg
     2041 cttaaagaaa gagtggcgat gacagctgat cctatgggca ttatagattt tatttcttta
     2101 tatgctattg cgattgctga agaaaatgct agcggagcaa aagttgtaac cgcgccaaca
     2161 aatggagcat gtgccgttat ccctgctgtt atgctttatc ttaaaaatca tactataggt
     2221 tttagtgatg aaaaagctat agagttttta ttaacagcaa tgcttatagg ttctttttat
     2281 aagaaaaatg caagtattag cggagcagaa gcaggctgtc aagcagaaat tggtagtgct
     2341 agttctatgg cagctgcggc tatggcaaca gttttagggg ttaatgcttt taaagcatgc
     2401 aacgctgctg aaatggcaat ggaacatcat ctaggtttaa cttgcgatcc agttgcagga
     2461 cttgtgcaaa ttccttgcat agaaagaaat gcctttggag ctattaaggc tataagtgct
     2521 gctagaatgg caatgacacg taaatctact cctatggtaa gccttgatga ggttatagaa
     2581 accatgtatg aaacaggaaa agatatgaat tataaataca aagaaacttc tttaggtggt
     2641 cttgctacaa atttaaaaac agtatgctaa agtgttttta cactttggtg tattttttca
     2701 ttcttagact taaaaattct ttcatttctt ctttggaaaa acttttaaga atacgaattt
     2761 gcttaaaaag caagccaaga ttgattgctc ccatcactaa aagcaataag caaatcatta
     2821 aaaaaacaag atctatggct ccaaattcat taatcatagc caaacttgca aaaaatacgc
     2881 tcgctaataa caaaaaaaat aaaagcaata tttgttttaa ttttgcctca ttaaaattat
     2941 cgcaattttg agtgaaattt ctaaaaagta tgatcttttt acccaaattt gaaactaaaa
     3001 tttcatcatt ttctttaaat aagccttctt ttaaactttg ataaaaaaag atttcattat
     3061 ttaaatttaa agcatctttg tagcttgata aggtgtagtc tttgtaaaaa aaggatttta
     3121 attcattttt cttttctatt ttaaataatc ttaaatcatt tctcgcataa aaaaatccac
     3181 taaagttcat aaatgccata agtatcactc cctaaaaaat tcctataaag tggcttgaaa
     3241 tttaaaggta ttgtaacatt tttttcatca tttaaacttg aactttggaa aatcaaaaac
     3301 atatctattt catctttaaa ggttttgaga aaattttctc caccctcata cattaaaaat
     3361 ttagcttcac ttggaatttg ggtataaatt tggcggtttg gaactttaaa taaagggata
     3421 tttttatcaa aattatctat attttgacgg cttaagatac aaagattagg cgcttttgct
     3481 ttgcaaagcc tagcatctag tatagggtga tcttttctta tggtttctcc accgactaca
     3541 agcaaatcaa tcaccgctct aattttatgt gcataagtgc gacttagctc attgcttacg
     3601 attttgccaa aaggtgagcc gttcatagaa agggctaatt taaaaagttt aaattgccct
     3661 ttttgccatt ttaaaaaagg ttttaaaagt ttttttcctt cttctttaag tatgtcaaat
     3721 tcaacctcta taccttgttt ttttaaaaat tcagccccac cacttgcgat tttatttcca
     3781 tctttaacgc tgatgaaaat ttttttaaaa cctagctcgc taaagagttt tgcacaagga
     3841 ggcgtttttc cttgatgaga gcaaggctca agtgtgacaa aagctatgct atctttaaat
     3901 acaccttgat ggtttttgca aataaactca tgcaaggcgt ttgcttcttt aggcaatgaa
     3961 atttcaggtc ttaagttttt aaaagcatga gctatggcat taagttccgc atgagctaat
     4021 ccagcttttt catgagcttt tatggctaaa attttttcat ttttatctaa gattacacag
     4081 cctacagccg gatttggata ggttaaaaac tgatatttcc aagcctcatt taaagctaaa
     4141 ttcatataaa attctttcat ttgcctacct tgtattttaa aatttgacat atttttaaaa
     4201 ttttatattt ttgttttaag ataacaaatt ctaaattttc catttgtatt tcttattttt
     4261 aattatatta gccatagttt ttctaagttt ttttaggata taacaaaaat agtaagaccg
     4321 aagtattatt tttcatttgt aatatccttt ataatttcag gaatgatata agcttgataa
     4381 actagaaagt cttggtggcc gggagaaagg gattcgaacc cctggaggtg tgaccctcaa
     4441 cggttttcaa gaccgccgct ttcgaccact cagccatctc ccgataaagt aaagttttgc
     4501 cttttggagg cgacatccgg attcgaaccg gagatcaagg ctttgcaggc ccatgcctta
     4561 ccgcttggct atgtcgccct gataatgttg aaaaagtggt gcccgaggcc ggacttgaac
     4621 cggcacggaa gaaaaattcc gagggatttt aagtcccttg tgtctaccaa ttccaccacc
     4681 cgggcgggtg attatggagc gggaaacgag attcgaactc gcgaccccaa ccttggcaag
     4741 gttgtgctct acccctgagc tattcccgca taaatttctg aaagaattga agataaaagt
     4801 atagcaaaat aaacttaaaa ggagtttatt ttgccttaag ttatttgcaa ataaataaag
     4861 ctttcgcgct taaaatttgt tctttttcgc tgataattgg agatgaaagt tctatattgt
     4921 cagattttgc atttaacatt ctaggtgcga tattggcatt tgtatttact tgtaaatttt
     4981 tcaatacaca agttttatta agatctaaag agtaagtttt ttcatattcg tatgatgttt
     5041 ttaaaagctc tttgtagaga ttttctttgt tgttgtttag tgtatctttt gaaaattttg
     5101 tttgtatggc tggtgttgaa acgctgatga aattattttt agctatgata gaattgatgt
     5161 catttaaaag cttgttaaaa tctgcaagtt ggttttcttt aaattcacat tctaaattcg
     5221 catcaaatct ttgacctttt ggagtttgta taccatcttt ataggaaaaa ttaggttcta
     5281 aagaaaaact tcctccgcta caaaaatttt ctttttttga gcgttctaaa atttgattga
     5341 aagtatttgt gatttcagct ttttcactat tgtctaatgt aatttttgaa cttaaatttt
     5401 catttgccca aaaattaata tttgcatata aaatatcggg ttttagcgta ttgcttactt
     5461 ctatatttct tgaaaaatat aaatcatgat tagagtcttt tttgcctaaa aattctacat
     5521 taaaaaccac gcctgcaaca aaaagtaata aacataaaaa acctacacct aaacctttaa
     5581 aaaaagctaa catggatatc cttaataatt taatttgagc taattttagc aaaaaatttt
     5641 aaaatttttt gttatactct catttatgca aaaaaaagag cttgaaaaac tacaagaaaa
     5701 tttacttctt tggtatgaaa aaaatggacg caaaactttg ccttggcgta atttacaaag
     5761 tcaaaattgt gatgaaagtt taaagcatat tgatagagct tatggggttt atatcagcga
     5821 aattatgctt caacaaactc aagttaaatc agttttagaa aggttttatt tccccttttt
     5881 gcaaaaattt cctactttag aaagtttggc taatgctaat gaagacgagc ttttaaaggc
     5941 ttggcaagga cttggttatt acactcgtgc tagaaattta aaaaaggcag ctttagaatg
     6001 cgtggataag tttggggcta aattacctaa agaagttgag gatctaaaaa aattaagtgg
     6061 tataggagct tatacagcag gcgctatagc ttgttttggc tacgatcaaa aggtttcttt
     6121 tgttgatggc aatatacgcc gtgtgctttc tcgtcttttt gctttggaaa atcctagcat
     6181 gaaagaactt gaaaaaagag ctaaagagct tttaaattta aatcatgcct ttgatcacaa
     6241 ccaagctttg cttgatatag gggctttggt ttgtgtgggt aaaaatgcaa agtgtgggat
     6301 ttgtcctttg tatgattttt gtcaaggcaa atttcataca gagctttatc caagagctaa
     6361 aaaaatactt tatgagagtt taaatttaaa tctttttttg tttgaattta ataaaaaatt
     6421 tgcgatacag aaaagccaag ataagcttta taagggtatg tataattttc ctttttttaa
     6481 agaaggagag tataaacttt ctaaagatat gggttttgta ggggagttta agcacagcta
     6541 tactaagtat aaacttaata tcaaggttta tcatcaaatt ttaaacaatg aaaataaaaa
     6601 ttataaattt aaaaccttaa aagagttaga aagtaccgca ctttcggcac tttctttaaa
     6661 agcgttaaaa ttaattaagc tctgattttt taggcaaaca taaagtagct ataagcatga
     6721 tgattgtaaa aatagctata tatataaaaa agccattttc tatacctgca tttttaaatt
     6781 gtaaagcaac ccaaggagca gatcctccaa aaacagcatt tgaaatagca taacccaaac
     6841 ctgtccctaa agctcttaca tgttcaggaa aaagttttgc tttaaaaatc ccagcaactg
     6901 aagtataaaa acttaaaata acaaacaata ataccaccaa cataaatgtc aaagaaggat
     6961 tattttgtgc gttattggct ataagtgaaa aaataggata aattcctacc aatgccaaaa
     7021 tacaaaatac aattaaagat cgtttgtgac ctattttatc tcctatatat ccaaaaagag
     7081 gttgaatgat cattagtata aataaagcac ctaagaaaag attattaaca agcattttat
     7141 ccatacccgt attttccata aaagttttag tataagttgt aatagtataa aaagctaaag
     7201 aacctccaga ggtaacccca agtaccatta aaaaaggttt ccaagatttg cataatgcct
     7261 ttaaagtacc acgatcttca tgctggtgaa gttttgtagc actttcattc atcatttttc
     7321 ttacaaaaag cgagcctagt gctaaaattc cgcctattgc aaaaagtatt ctccaagcat
     7381 aatctttcat atcatcaatg ctaaaaaata aaaacattat actaatgctt gcaacggcca
     7441 aaagttgacc acctattagg gttacatact gaaaagatga gtaaaaaccg cgttttcctt
     7501 ccgtagcaag ttctgaaaga taagtagctg ctatgccata ctccccgcct acactaagac
     7561 cttgaataag tcttgctatt aaaagcaaga taatagcaag atcgcccact gtatctttgc
     7621 ttggtaaggc tgctatcata aaagagccca aagccattaa aaccactgat ataaccatag
     7681 atttcttacg acctacttta tcagccaaag aaccaaaaag ccaagaacct ataggacgca
     7741 taaaaaatcc tgctgcaaaa actccaaagg cattgatttg ctggataaca ggattatctg
     7801 aagttgaaaa agtatgagca aaataagttg ctgtaaaagc atagatataa aagtcaaacc
     7861 actctactaa atttccgcta cttgcagcaa taatagagcg aatttttttc gtgcgagtaa
     7921 gctcttgcat aaacccttcc ttaattttag atttttattt aagtatagtg tgatttttgt
     7981 ttaatatatt taaaaataaa gaagagaaat aaaaaagata aaaatatcga taaaaatgtt
     8041 acatatttta ataaatttca taaattttgg taaaatgttt actctaggaa atataatgaa
     8101 atttaaaaaa atatatatag aattaagtga tatttgtggt ttaaaatgcg atttttgtcc
     8161 ttctcgaaaa ggaattcgcg gggtaatgag tgaagaaaaa tttcaaaact tagcttatga
     8221 aatttctaat aaagctgagc tttttacctt tcatcttttg ggcgatcctt tgcttttacc
     8281 taatttggga aattatctaa aaatcgcaaa agatgaagct atgaaacttg aaatcactac
     8341 aagtggcttt tatctaaatt ctaaaaatca agctttattg ttagggtatg agaatatcca
     8401 tcaaatcaat atttctttaa tgtctttttt aagtcaaagc aaaatttctt tagaacagta
     8461 ttttaagcct attttagaac tttgcaaaaa gcatttagag caaaaaagcc tttcttttat
     8521 caatctaaga ctttggaatt tagatgctaa ttttaaagca cctaagtcaa atttaaaaat
     8581 ttatgagttt ttagccaaag aatttgaagc taagatcgat gcaaacttaa gtaaaaatcg
     8641 cttacaaaga catattttgc ttcatcaaaa taaacttttt aaatggccaa atttaaaaga
     8701 taaacccctt tataaaaaag gaaaatgcca tgctttaaaa gagcaaattg ggattttaag
     8761 tgatggaagt ttagtgcctt gctgtttgga tactaaagca gatattaact tgggaaatgt
     8821 ttttgaaaat aactttgata agctttttaa atcaccgcgt ataaagatga tgaaaaaagc
     8881 ttttgaagaa gataaacgca tagaaaaact ttgtcaaact tgcgaatttt ttaaagcaag
     8941 attgagtgat taaaaattgt tattttctag ctttgtttta aattcttgaa ttctatctat
     9001 tatcttagga ctaagacgta ataatatagg tgtatctttg ttaaaataaa tacttcctgt
     9061 tttaactgct ttggtatttt tcaataaagc atttgtatct aaaagattgt ttttagcatt
     9121 aattccaaga atgagtatat ctggattttg tttcagtata tattctgctg atataacagg
     9181 tcttgaaatt tgactttgcg gacttaaatt tttaatccct ataagtctta aaatatcagc
     9241 tattaaagaa ttatcattaa aggccattaa agggttgcta gaataaagat aaatcgcact
     9301 tttatttagg ggtttatcgc ttaatttttt taaattttga gcaaattctt gttttaaaag
     9361 ctctgcttct ttttcttttt tggtgatttg gcctaaggtt gtgatatttt ttgttatatc
     9421 ttctaaacgc tcggctttta aattgatact tttgatacca aaatttttaa gtccttcttc
     9481 taaatttaaa gaataagagc ttaaaatcac caaacttggt tttagtgcta ctattttttc
     9541 aagtgaagga tttgaaaaag tgcctacgct tgtaagtttt gaggtttgat ctttaggata
     9601 gatatttgag tgttgtaaag tggcaatgcc tacgatttga tcttcagcct taagcataaa
     9661 aagggtttct atgcttgcag gatcaagcac tacaaggcgt tcttttgcat ttagtgtgat
     9721 taaaaacaaa ctcataataa ttaaaatttt tttcattttt tctcctttaa agctaaaata
     9781 taaggtttag aatttttata aataatctcg cagtttaaat cataaatttc ttttaaaatt
     9841 tcttgagtaa aaagctcttt actcgttcca aaatacttta tctccccttc ttttaaaaaa
     9901 aggattttat cgcagaacat agaagctaaa tttaaatcat gtaagatagc aacaacggct
     9961 atattttttt ctttaactag tttttcgcaa aggcttaaaa gctctatagc atagtttaaa
    10021 tcaagggctg aagtgggttc atctaaaaaa agaatttttg gctttttaag taaagctctt
    10081 gctaaaagca ttctttgaaa ttcacctccg cttaaagaaa gtatgcttct ttctagaaaa
    10141 ttttcaagtc ttaaatcttt agcaaatttt ttaatttcta aaatatcttc tttagaataa
    10201 gaactaaaag cgtgttttaa attcgcatat ttgctcatta aaagcacatc gatgactttt
    10261 aaaggggtgt ttaattctga tttttgaggc acaaatccgc aaattttggc aaattcttta
    10321 agagaaaaat ccttgatatt tgtgttaaaa agacttatca ctcctttatt tggacttaaa
    10381 tttttaagta taagttttaa aagagtgctt ttgcctgagc catttggccc taaaattcct
    10441 ataaaagctt ggtttttaag ttctaaatga atatttttta gtaaatcttt ttggtgataa
    10501 gcaaagctta aatcatgtat ttttagcatt ataaaaatct cctagcgctt aaagccaagt
    10561 ataaaaaaat aggagctcca aaaaatgcag ttagaattcc aatcggaatt tgcacaggag
    10621 ctaaaagagt tcttgctaaa gtatcacaaa taagtaaaaa taatcctcca aatgctgtac
    10681 ataaagggat aactaaggca ttattataat ttttaagcaa aagtcttata gcatgaggaa
    10741 tgatgagtcc aacaaagcct ataagtccgc taaaagcaac cgcaaaagat acagccaagg
    10801 atgagacaat gagtaaattt atctttaatt tttgagcatt tacccctaga tttctagctt
    10861 catcatctcc gcttaaaagt atgtttaatt cgtttttatg agcgtaaaaa taaaacaaac
    10921 aaaaaattaa aggcaagatt aaaattccca cacgaaacca agaagcattg cctatatttc
    10981 ccataagcca agcgactatt ttaaaagaat cctcgcctat aagataagtg aaaaaagaag
    11041 tgaaagcccc taaaaaagat gaagctgcta tgccgataat gagtaaagtt gctatagaag
    11101 ctttagaaga aattttaaaa actcctaggg caaaaaaggc agagcaaaca aaacctaaaa
    11161 ttccataata ataatcattc aattttaaca aatacgccaa aaccgctcca aaggttgccg
    11221 cagaagctat acctatgata taaggatcag ctataggatt tgaaaatgca ttttgagtga
    11281 tagccccact actagctaaa agcataccga ttaaaatcgc cattataatc cgtggtaagc
    11341 gtccatctat gattatttgt cttaaaattt catcttggct aaagatatat gaaaaaagct
    11401 cttttgggtt taaattctca tctcctaagc aaagtgctgt aaaagaagcg attatataag
    11461 ctaccaaaag ccctataatc actaaaattt tagaatgcgt atttaaattc aacatagtag
    11521 tttctgccat ttccaactag gtattgatca tttatactgt cttgataggt gtagtatctt
    11581 ttatcgaaaa gattgcgaat tcctgctaaa atttgtaatt ttttataatt atatttcatg
    11641 ccaatatctg ttaaaaaata atcccttatc caagaatttt tagacatttt tcctgtattt
    11701 tcatctatag tgccaccatc ttttgctcta gaaaaatagg ttaaatcaat aaaatttgag
    11761 aaatttttat tccaagcgta ttcaagccca gctgtggctt tgatttttga aacataagga
    11821 attctcacgc cgtcattaac acctttagaa attttagcat caagataagt tagactttct
    11881 ctaaagatta aatcatcatc taaaaaattt tgactcaggc ttaattctac tcctaaacgg
    11941 cgagtttgat ctatattata atatttccac caagatccac tagtagaatg agggtttcca
    12001 agataagaaa tttcatcttt gcttagggtg taaaataaag ttagattaaa gccgtaaaaa
    12061 tcccaccaaa aatcatcaat acctagttca aaggtatcaa agatctcagc ttttaggttc
    12121 gacgaataat agggtggtat tccattacca gttttgttgc gattgacaaa ttgagcaggt
    12181 gtaggagaaa caaaacctct ttcgtattta agataaagat tgcctgtgtc agagtattta
    12241 aagttagggg tgatttcaaa agcaaaatta ttggtgtttt tatcggtatc aaaaagggtt
    12301 gttgagtctg tgattatagg atttgatgat ggcggtcttc cgttcatact catttcattt
    12361 ctataagatc tattggtatt ataagtgcta aattcatatc tagctccacc ggataaagtg
    12421 aaaaattcat taaaattatg agaatcaaga gcgaaaatag aatggctttg tttagtcata
    12481 tccattaaag ttgtcatcct gtgataattt atgacacctg gaacgctata atacaccaaa
    12541 ctctttcttt ttgcatcatg gtttgtaaat tcataaccaa aaataaaata agaattattt
    12601 gcataattta gcttgttttt taaacttatc cctgtaagtg tgtcttcaaa accacttcca
    12661 ttttgataag ctgtagttcc catcatagaa atttcatctt ttagataatt gatcttttga
    12721 ttttgccaaa aagcttctag gttaaattcc catatatcat caaaatagta atgataatcc
    12781 aaagaaattt cagggcgatt gatttgtgtg atattgtcac tattgccttt ttgggttgga
    12841 tcgctttgag cttgtgcttt tgttagatag ccactgctgg tatttttgct tttaaaataa
    12901 ttataaccca aagttaagtc gctattatca ttgatatcaa tataggtttt tgtgttgata
    12961 aaatagcctt tttcattata acctttttga tatccatcaa ggttaaaact ttgtatatca
    13021 aagctaaaag ctaaattttc atttatttgt ttggcgccat tgatacctaa atttccacct
    13081 agtccaccat gattataggt actgcttttt aaatttatag caaaagcatc tgatttttgt
    13141 ttttttgtaa tgatattaat cacgccacct ctagtaccac ttccataaag cacagatcca
    13201 cccccaggta tgatttctat gcgttctaca ttatctaaat tgatactatc tagtggggtt
    13261 acaccatggg aattatcaag aacattaata gcatgcccat caatcataac ttttacagct
    13321 atattggatt tatttccttg tccacgcata tctatattgc gtccaagtcc aaaatttaca
    13381 aaactaatgc ccgaaattct ttctaaggct tgttctaaag aaacataacc tttattttgt
    13441 agatctttgc cttctatgct gattacattg cgtaaatttg aatccgcatc ttgttcaaaa
    13501 cctgttgtac taacaacaac tttttgtaga ttgatagctt tatttgattc ttgtgcattt
    13561 aaattagtta ttagcaataa tgcaaataaa gataatttaa aagctttttt atttgggtgc
    13621 aaattttact ccttaaataa aataaa
//
LOCUS       DAPIWU010000044        13620 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.044, whole genome shotgun sequence.
ACCESSION   DAPIWU010000044 DAPIWU010000000
VERSION     DAPIWU010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13620
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.044"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            67..1188
                     /locus_tag="RJ285_000989"
     CDS             67..1188
                     /locus_tag="RJ285_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HDV7383779.1"
                     /translation="MLYCDHCVMPNTRPGIKFFKDEKGKNICSACINHKNKEKIDYKA
                     RFKELENLCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHVMKEKLGMNPILFSVEDNFT
                     MTQAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGGDDKETPSAKAIFENGVASDLDINEFIDDEIKEENL
                     QLFFNPSADDLNKLDPIYLSYFIKWNSYSNYIFAKSRGFSDLQNEWDRSHCAENFDQI
                     DTIGYILHAWMKYPKFGHAMASDYASRFVRYGMMSREEAVKIVKEKDHKLDNKCIEDF
                     CNFTGISKTTFWKIVEKHYNLELFYKNEFNEFKLKNPLK"
     gene            1199..1879
                     /locus_tag="RJ285_000990"
     CDS             1199..1879
                     /locus_tag="RJ285_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7383780.1"
                     /translation="MQNSLQTYTQKYDENNYGLLYPDSHVIRFYERILKYKLGITSGN
                     LLDFGCGNGVHSKYFLDKGFKPFGIDIVPSLQKNWDAKIKISGGGDCKIIEPNSSIKG
                     LFDEKMDIVFANQSLYYIPKTELKQNILEFYECLNQGGILFATMMSEKNYYFSHSEKE
                     NENGLRKVSIQGRLNETTYIHFAKSIDELQELFKPFEALFLGDYDPINFYNFEGSAHH
                     FIYIGIKR"
     gene            1921..2925
                     /gene="legI"
                     /locus_tag="RJ285_000991"
     CDS             1921..2925
                     /gene="legI"
                     /locus_tag="RJ285_000991"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HDV7383781.1"
                     /translation="MKKALIIAEAGVNHNGDLNLAKKLIEVAAKSGADFVKFQSFKAE
                     LCVSKNAKKAAYQLKTTAKDESQLEMIKKLELDFNAHQLLISHAKQCGIAFLSTAFDL
                     ESIELLDDLGLEVFKIPSGEITNLPYLKKIAKLNKKIILSTGMSNLGEIEAALEVLCK
                     EGTQRANITLLHCTTEYPAPFNEVNLKAMQTLKNAFNLDVGYSDHTKGIHISLAAIAL
                     GASVIEKHFTLDKNMSGPDHKASLEPDELQELCTKIREIESALGDGIKQASKSERKNI
                     EIARKSLVAKKKIKKGEIFSEENLTTKRPASGISAMRYDEYLGKKASKDYEEDELIHE
                     "
     gene            2918..4093
                     /gene="legG"
                     /locus_tag="RJ285_000992"
     CDS             2918..4093
                     /gene="legG"
                     /locus_tag="RJ285_000992"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDV7383782.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCLEIQNDKDLELQIIATGAHLS
                     PEFGLTYKEIEKEFKIAKKIPILLASDDKISLCKAMALANIGFSEAFESLKPDIVVIL
                     GDRYEMLSVASVCLMMNLPIAHLCGGELTLGAIDDSIRHSISKMAHLHFVSTQTYKNR
                     LLQLGEEKNRVFNVGSLASTIMKNINFLDKNELAKVLEFDLGQNIYLITYHPVTLNLK
                     NSKKEIDILLKTLDELNNASLIFTKANADENGLLINEILKDYCEKNPKKAKLFDNLGS
                     QKYLSIMKIAKAMIGNSSSGISESPFFKTPCINIGSRQKGRLRTQNIIDCEFENLDQA
                     FEKLESKDFKQALHHFKNPYENDKNPNIIIKTCLKNANLDTILQKNFIDLRQNLGYK"
     gene            4080..5111
                     /locus_tag="RJ285_000993"
     CDS             4080..5111
                     /locus_tag="RJ285_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HDV7383783.1"
                     /translation="MDINKLKLTPDSSIEEALKVVGKERVRLGIIVDKKDKFLGVISD
                     SNIRKALIKGKNLQSKIKDIYTKNPITIKENTSKNELLKLSAKTDIYDFPVLNDKKEI
                     ISIKSISSLLNRQVNSNFVIIMAGGLGTRLKELTKDTPKPMLKVGKKPILESIVQKLK
                     EQNFENFIFCVNYKKQIIEDYFKKGKNFGVKISYIKERKKLGTAGALSLIKQDFKESF
                     IVMNADILTELNFNELLKAHKDSKALMSVCVREFEQQIPFGVIEQNKGFITNITEKPV
                     QKFLVSAGIYVCEPEMLELLNKNEYLDMPELIKLAMQKGRVNTYLIHDYWIDIGRLDE
                     FVKANEDFK"
     gene            5108..6013
                     /locus_tag="RJ285_000994"
     CDS             5108..6013
                     /locus_tag="RJ285_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDV7383784.1"
                     /translation="MKVLIIGFGSIGKKHFLALNELRFLVDVLSKSYEFSHFEGKNFR
                     LFKDLEELNLQDYDLFIIANITTSHFKTLEFLDQNVKEKIILVEKPLFQKDMEFIPSN
                     NNQIYIAYLLRFHPMIQDLKQLIDEKEVYFAKFICNSYLPNWRKLDYRQNYSAKKELG
                     GGVMLDLSHEIDLAFYFFKELSLKFSQNLKISELEITSDDFTFLALSAKNTSIHIELD
                     YFSKLTQRKILFHTKENSFEADLVHNKLNIYDKTNNFKSKTYENDTFKTLQNMYKAIL
                     EKDQNLCTLGEARRVLRLCDKARNE"
     gene            6006..6713
                     /gene="legF"
                     /locus_tag="RJ285_000995"
                     /gene_synonym="ptmB"
     CDS             6006..6713
                     /gene="legF"
                     /locus_tag="RJ285_000995"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HDV7383785.1"
                     /translation="MSEILCTICARGGSKGVKNKNIRKINDLEMIAYSIIQAKNSKLF
                     KHIVISTDSEEIAKIALKYGGEVFFKREAHLASDTAAKIPVMRDALLRSEEYFKCQFD
                     TLIDLDASAPLRSSADIIKAFETFCQNQNDNLITAVPARRNPYFNLIEVQDGKVVKSK
                     SGNFTTRQSVPKCYDMNASIYIFKRDFLLQNDSVFGKNTGLFIMDESTAFDVDSELDF
                     KIVEFLIKEKNLQAKDF"
     gene            6713..7483
                     /locus_tag="RJ285_000996"
     CDS             6713..7483
                     /locus_tag="RJ285_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDV7383786.1"
                     /translation="MLENKIIFVAGACGRIGKALCKKILQNKGIAILADINENHLSIL
                     KTELENEFKKELLSLRLDITSKESLNCAIDQAFEKYSKIDSFVNSSYPVGKDWGKIAY
                     YEASYEQICESLNLHLGGFILASQEFVKFFKKQSYGNIINLSSIMGVFAPKFENYENT
                     TMQSSLEYSVIKAGINHLGAWLAKELFNTNIRVNTLASGGILDNQANIFLEKYRKCCA
                     SKGMLDAEDICGTLVFLLSDESKFVTGQTLVVDDGWGL"
     gene            7483..9342
                     /locus_tag="RJ285_000997"
     CDS             7483..9342
                     /locus_tag="RJ285_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7383787.1"
                     /translation="MNNELFLKNTQALFEVDQPLAYALRILKNIENYNIDKNSDGLNI
                     INKQMQKIYENPNQELLDQLVYFQTHYKKYPVLFFYGFGNGMLYKTLCENKNHKHIIV
                     FENTLELIALAFSLFDFSQEIKSEKLILFYTPNITTAQLTTLFTHPNIYNCLKIYKLH
                     IHSNFYQQLYNQEIKNLNTKLSETIKFIALNYGNDPKDSLIGIKHTLENLPKVLNHGI
                     FQDFLKERRGKVKNAIIVSTGPSLTKQLPLLKKYGHKMTIFCADSSYAILAKAGIKPD
                     YVLSLERVHYTSELFNNDFKDFDKDILFIISSLTHKNTLHYLEKNNRTYMLVHRPLES
                     AGILKLDNFGYIGVGYSVANMAYELASALRHENIILIGQDLAYAEDGSSHPKDYLYLE
                     QADNTDNTTTLAYGKNGLVKTTLTWNLFRQTFEKDIFWTKEKLNINTYNCTEGGAYIE
                     GSIEKPFLWACENLLDESLNKPFSFPKSLSKKEANDKIDKIKKILQSAILQANKLIKS
                     TQKELNKLKFELNRDEINLQTLEKIRKKLLISFKEYKKLKLFNELSRALYFHNECEIV
                     KYEAMDDENQKKYLSHFLKLQYNWFAQGLGYLDTQNKIIQEALQNWHFDDIKE"
     gene            9363..11303
                     /locus_tag="RJ285_000998"
     CDS             9363..11303
                     /locus_tag="RJ285_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7383788.1"
                     /translation="MNFTSNQQEIFKQNINALVNEILRKKLQKIKNTKFELLLGNDNL
                     DINLRNTKDNTLLYINTIDELNSMLEIYNDKYLLYPVLYFYGFGNGILFKALLQNKHR
                     QHIVIFENDIEILWIMFHLLDFSCEIKKNKIIIFDTNEINIKDYEMLTLTKPFISFLR
                     IYFLELSSSYYEKMNKDIQKVNKNLMEYFKKAMIGYGNDPLDALQGIEQFVHNLPKML
                     THSSYKELINKRKNLSKTAIIVSTGPSLIKQLPLLEKYQNKATIFCADSSYPILAKHN
                     IKPDYVCMLERTSLTAEFFNHDFKDFDKDIVFICASLIHPNAIAYLEKNNREYILISR
                     FLSFALFIACHDYGYFDQSPSVAHMSYIIAAKLCHKNIIFIGQDLAYAENGDSHPQEY
                     QNSSTFESNIYQKIECLGYGGKNSVKTHSIWLLFKQIIEQLILDYPYINTYNCTEGGA
                     WIEGTIEQSFKTTCDKLLLDDLNKPFIKLKKPNIQKQNELMLKSYAKIYKSIKHCIEF
                     KKQTLATIEDIESSYTTLNYLSLEESKEILDILIQIIDNFKTKLENVNMVDFYEILGP
                     LLMQFELNLARIYVLNPKTLEDSFNKSVLWIKEHLEFIHMVYGHIEAQENALFKNIIP
                     LEEELKKRGFKKYLQRIKNANK"
     gene            11290..13188
                     /locus_tag="RJ285_000999"
     CDS             11290..13188
                     /locus_tag="RJ285_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7383789.1"
                     /translation="MQTSDIFKKNLDSMKGNVYKKLKEELKNFQELRDFSFTIGKDSL
                     NINLICKKNLKKIYQDPVQELNENLVFYQQNYYNHPFLFFYGLGNGILYKALLKNLNH
                     KRIVIIEKELEIIFIVLNFIDFSEYLFNGRIAIIYSSDYNNNTAELIFSLTNINLFFK
                     TYQINIHSAFYETYQEDIKKINNINLQTIKYLTLKKGTDPSDAMLGIEQAIWNLPEMF
                     KHYSYKELLQKRKGLNKNAIIVSTGPSLTKQLLLLKQYANKAIIFCVDSSYSILAKHN
                     IKPDYVLSLERIPLTSEFFNNDFGEFDKDVLFILPSLTHPNSIKYLNKFKKDYMLIAR
                     YLPFMISLNLKDNGYIGGGMSVAHVAYELAISLECKNIILIGQDLAYNKEGKSHTDDY
                     INLTLHEKDFERDKGRFTTTAYGGKGTVESSEIWTLFRKIFENYAINNKKCIKIYNCT
                     EGGARIEGTIEKPFEEICEEILESEIKKPLIKLKKKTKKEQFEHMLKSYQKIKKNIQL
                     ALSFQKECKKTLRKIQKITLKNEYINMDDIVKDIDNIRNKLSNKRYFFLHEILGPSLY
                     HEESLIAPIYIQSVNNESQRQNKILSWIYANESLIETIIDLIESQNIRIKKAIIPLQD
                     ELEKRNLI"
     gene            complement(13216..>13620)
                     /locus_tag="RJ285_001000"
     CDS             complement(13216..>13620)
                     /locus_tag="RJ285_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7383790.1"
                     /translation="SSTYVVSAGSGFSAGSGNSQFAALRISTVSAHDETAGVTTLKGA
                     MAVMDIAETAITNLDQIRADIGAVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAES
                     ANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ"
BASE COUNT         5334 a         1896 c         2127 g         4263 t
ORIGIN      
        1 attaatgttc gatatactct aaacattttt taaaaaaaat aataaataat taagggggaa
       61 accaaattgc tttactgtga tcattgtgtc atgccaaata caaggcctgg tataaaattt
      121 ttcaaagatg aaaaaggtaa aaacatctgt tctgcttgta tcaatcataa aaacaaagaa
      181 aaaattgact ataaagcaag atttaaagag cttgaaaatc tatgtgataa ataccgcaga
      241 atgaatggta aattcgaata cgattgtgct atagctgtaa gcggaggcaa ggattcacat
      301 tttcaagtgc atgtcatgaa agaaaaactt ggaatgaatc ctattctttt tagcgttgaa
      361 gataatttta ccatgacaca agcaggcaag aaaaatctta aaaatttaag cgaaactttt
      421 ggttgtcata tcattagctt aaaacctgat atcaaaactc aaaaaaaagt tatgctaaaa
      481 acctttgaaa aatatggaaa acctacttgg tttattgata gactgattta cagctatcct
      541 tttgctatgg ctttaaaatt taatacacct ttattggttt atggggaaaa tgtaagttat
      601 gagtatgggg ggggggacga caaagaaacg cctagtgcaa aagcgatctt tgaaaatggg
      661 gttgcaagcg atttagatat aaatgaattt attgatgatg aaataaaaga ggaaaatctt
      721 caacttttct ttaatccaag cgctgatgat cttaataaac ttgatccgat ttatcttagt
      781 tattttataa aatggaattc ttactcaaat tatatctttg ctaaaagtcg tggatttagt
      841 gatttgcaaa atgagtggga tagaagtcat tgtgctgaaa attttgacca aattgatacc
      901 ataggataca tactgcacgc ttggatgaaa tatccaaaat ttggtcatgc aatggcaagt
      961 gattacgcat ctcgttttgt gcgttatgga atgatgagta gagaagaagc tgtaaaaatc
     1021 gtgaaagaaa aagatcataa actagacaat aaatgtattg aagatttttg taattttaca
     1081 ggcattagca agactacttt ttggaaaatt gttgaaaagc attacaatct tgaacttttt
     1141 tacaaaaatg aattcaatga atttaaactt aaaaatccat taaaataaag gaaataaaat
     1201 gcaaaattca cttcaaacct atactcaaaa atatgatgaa aacaattatg gacttttata
     1261 tcctgattct catgtaatac gattttatga aagaatttta aaatacaaac ttggcattac
     1321 aagcggaaat ttacttgatt ttggttgtgg caatggggtt cattctaagt attttttaga
     1381 taagggcttt aaaccttttg gcatagatat tgtgccaagt ttgcaaaaaa attgggatgc
     1441 aaaaatcaaa atttcagggg ggggggattg taaaatcata gagccaaatt ctagtatcaa
     1501 agggcttttt gatgaaaaaa tggatattgt ctttgcaaat caaagccttt attatatccc
     1561 taaaacagaa cttaaacaaa atatcttaga attttatgaa tgcttaaatc aaggtggaat
     1621 actttttgct acaatgatga gtgagaaaaa ttactatttc tctcatagcg aaaaagaaaa
     1681 tgaaaatgga ttgcgtaagg ttagtataca gggtcgctta aacgaaacaa cctacattca
     1741 ttttgctaaa agtattgatg agttgcaaga actttttaag ccttttgaag ccttattttt
     1801 gggtgattat gatcctatta atttttataa ttttgaaggc tcggctcatc attttattta
     1861 cattggtata aaaagataaa aattttttgc ctttattgaa ggcaaaataa aggtaaaaaa
     1921 atgaaaaaag ctttaatcat agcagaagca ggggttaatc acaatggtga tttaaatttg
     1981 gccaaaaagc tgatcgaagt tgctgccaaa agtggagctg attttgttaa atttcaaagt
     2041 ttcaaagccg aactttgcgt gagtaaaaat gctaaaaaag cagcttatca gctaaaaacc
     2101 acagctaaag atgaaagtca attagaaatg attaaaaaac tagagcttga ctttaatgca
     2161 caccagcttt taatctctca tgctaaacaa tgtggtatcg cttttctttc aacggctttt
     2221 gatttagaaa gtattgaact tttagatgat ttaggacttg aagtttttaa aattccaagc
     2281 ggagaaatca caaatttgcc ctatctaaaa aaaattgcaa aattaaataa aaaaatcata
     2341 ctctccacag gaatgtcaaa tttgggcgag atagaagcgg ctttagaagt actttgcaaa
     2401 gaaggcaccc aaagagcaaa tatcacccta cttcactgca ctaccgaata ccccgcaccc
     2461 tttaatgagg ttaatttaaa agctatgcaa accttaaaaa atgcttttaa tcttgatgta
     2521 ggctattcag atcacaccaa aggtatacat atttctttgg ccgctatcgc cttaggggca
     2581 agcgtgatag aaaagcattt taccttagat aaaaatatgt caggacctga tcataaagcc
     2641 tctttagaac ctgatgagct tcaagaactt tgcacaaaaa ttagagaaat cgaaagtgct
     2701 ttaggtgatg gcataaaaca agcaagcaaa agcgaaagaa aaaatatcga aattgcaaga
     2761 aaaagcctag tagctaaaaa gaaaatcaaa aaaggagaaa tttttagcga agaaaacctt
     2821 accacaaaac gccctgctag tggtataagt gcgatgcgtt atgatgagta tttgggcaaa
     2881 aaagccagta aagattatga agaagatgag ctaatccatg agtaaaagaa aaatttgcat
     2941 agtcagcgca acaagggctg agtggtatct tttaagaaat ttatgccttg aaatacaaaa
     3001 tgataaggac ttagagctcc aaattatcgc tacaggagcg cacttaagcc ccgaatttgg
     3061 actaacttat aaagaaatag aaaaagaatt taaaatcgct aaaaaaattc ctattttact
     3121 cgcaagcgat gataaaataa gcctttgcaa agctatggct ttagcaaata ttggctttag
     3181 cgaagcattt gaaagcttaa aacctgatat cgtagtaatt ttaggcgatc gttatgaaat
     3241 gttaagcgtg gctagtgtat gcttgatgat gaatcttccc atagcccatc tttgcggcgg
     3301 agagcttacc ttaggagcca ttgatgatag cataagacat agcatttcta aaatggcaca
     3361 tttgcatttt gtaagcactc aaacttataa aaatcgtctt ttgcaacttg gagaagaaaa
     3421 aaatcgtgta tttaatgtcg gatctttggc aagtactatt atgaaaaata tcaatttttt
     3481 ggataaaaat gagcttgcaa aagtcttaga atttgactta ggacaaaata tttatttaat
     3541 tacctatcat cctgtaactt taaatttaaa aaattctaaa aaggaaatcg atattttatt
     3601 aaaaacttta gacgagctta ataatgcaag tttgattttt accaaagcaa atgcagatga
     3661 aaatgggctt ttgatcaatg aaattttaaa agactactgc gaaaaaaatc ctaaaaaagc
     3721 taaacttttt gacaatcttg gctcacaaaa atatcttagc attatgaaaa tagctaaagc
     3781 catgatagga aatagctcaa gcggtataag cgaaagtcct ttctttaaaa ccccttgtat
     3841 caatatagga tcaagacaaa aagggcgttt aagaactcaa aatatcattg attgtgaatt
     3901 tgaaaattta gatcaagctt ttgaaaagct agaaagcaaa gattttaaac aagctttaca
     3961 tcattttaaa aacccttacg aaaatgacaa aaatccaaat ataatcataa aaacttgcct
     4021 aaaaaacgcg aatttggata caattttaca aaaaaatttc attgatttaa ggcaaaacct
     4081 tggatataaa taaactcaaa ctcacacctg attctagcat tgaagaagcc ttaaaagtag
     4141 taggaaaaga acgcgttcgc cttggaatca ttgtcgataa aaaggataaa ttcttaggtg
     4201 tcatcagtga ttcaaatatc agaaaagctt tgataaaggg taaaaattta caaagcaaaa
     4261 tcaaagatat ctatactaaa aatcctatta ccatcaaaga aaatacaagc aagaatgaac
     4321 ttttaaaact aagtgcaaag actgatattt atgattttcc tgtgctaaat gacaaaaaag
     4381 aaatcatttc tataaaatcc atttcttcct tgttaaaccg ccaagtaaat tcaaattttg
     4441 tcatcataat ggcaggtgga cttggaaccc gtttaaaaga attgaccaaa gatactccaa
     4501 aacctatgct aaaggttgga aaaaagccta ttttagaaag tatagtgcaa aaattaaaag
     4561 agcaaaattt tgaaaatttt atcttttgtg taaattataa aaaacaaatt atcgaggatt
     4621 attttaaaaa aggtaaaaat tttggtgtaa aaatttctta tatcaaagag cgcaaaaaac
     4681 taggtacagc aggggcttta agtcttatca agcaagattt taaagaaagc tttatcgtaa
     4741 tgaatgcaga tattttaacc gagctcaatt ttaacgagct tttaaaagca cataaagatt
     4801 ctaaagcttt aatgagtgtg tgtgtaagag aatttgagca gcaaattcct tttggggtga
     4861 tagaacaaaa taaaggcttt atcacaaata tcacagaaaa gccggtgcaa aaatttttag
     4921 taagtgcagg aatttatgta tgcgagcctg aaatgttaga acttttaaat aaaaacgaat
     4981 accttgatat gccagagctt attaaactag cgatgcaaaa aggtagagta aatacttatt
     5041 taatccatga ttattggatc gatataggaa gacttgatga gtttgtcaag gcaaatgagg
     5101 attttaaatg aaagttttaa tcataggctt tgggagcata ggaaaaaaac attttttagc
     5161 cttaaatgaa ctgagatttt tagtagatgt gctttcaaaa agctatgaat tttcgcattt
     5221 tgaaggtaaa aactttagac tttttaagga tttagaagaa ttaaatttac aagattatga
     5281 cttatttatc atcgcaaata tcactacaag tcattttaaa actcttgaat ttttagatca
     5341 aaatgtaaaa gaaaaaatca tacttgtgga aaaaccttta tttcaaaagg atatggagtt
     5401 tattcctagc aacaataatc aaatttatat tgcttatctt ttaagatttc atcctatgat
     5461 tcaagattta aaacaactca tcgatgaaaa agaagtttat tttgctaaat ttatttgcaa
     5521 ttcttatttg cctaattggc gaaaacttga ttataggcaa aattatagcg ccaaaaaaga
     5581 gctaggtggt ggggtaatgc ttgatttatc ccatgagatt gatttggctt tttatttttt
     5641 taaagaactt tctttaaaat tttctcaaaa tttaaaaatt tcagagcttg aaataacaag
     5701 tgatgatttt acttttttgg cattgagtgc gaaaaatact tcaattcata tcgagcttga
     5761 ttatttttca aaattaactc aaagaaaaat tctttttcac accaaagaaa atagctttga
     5821 agccgattta gttcataata aattaaatat ttatgacaaa actaacaatt ttaaaagtaa
     5881 aacttatgaa aatgatactt ttaaaacctt acaaaatatg tataaagcga tcctagaaaa
     5941 agatcaaaat ttatgtactt taggagaagc aaggagggtt ttaagattgt gtgataaggc
     6001 aagaaatgag tgaaatttta tgcacaattt gtgcaagagg tggaagcaaa ggtgttaaaa
     6061 ataaaaatat acgcaagatt aacgatcttg agatgatagc ttatagcatt atccaagcta
     6121 aaaattcaaa actttttaaa catatcgtta taagcacaga tagtgaggaa atagccaaaa
     6181 tagcgctaaa atatggcggc gaagtttttt tcaaaagaga agctcatcta gcaagcgata
     6241 cagctgctaa aattcctgta atgcgtgatg ctttgttaag aagtgaagag tattttaaat
     6301 gccaatttga caccttaatc gatcttgacg cttcagcgcc gcttagatct agtgctgata
     6361 tcataaaagc ttttgaaaca ttttgtcaaa atcaaaatga taatctaatc accgctgttc
     6421 ctgctagacg caatccttat tttaatctaa tcgaagtgca agatggaaaa gttgtaaaat
     6481 ccaaatcagg aaattttacc acacgccaaa gcgtacctaa atgttatgat atgaatgcaa
     6541 gtatttatat atttaaaaga gattttttac tgcaaaatga tagcgttttt ggtaaaaata
     6601 cagggctttt tatcatggat gaaagcactg cttttgatgt agatagcgag cttgatttta
     6661 aaatagtaga atttttgatc aaagaaaaaa acttacaagc aaaggatttt taatgctaga
     6721 aaataaaatt atatttgtag caggagcttg tggacgcata ggcaaggcgc tttgtaaaaa
     6781 gatattgcaa aacaaaggca tagccatttt agccgatatc aatgaaaatc atttatctat
     6841 attaaaaaca gaactcgaaa atgagtttaa aaaagagctt ttaagtctta ggcttgatat
     6901 tacttctaaa gaaagcttaa attgtgccat cgatcaagct tttgaaaaat actctaaaat
     6961 cgatagcttt gtaaattcta gctatcctgt aggaaaagat tggggcaaga tagcttatta
     7021 tgaggcttca tatgagcaaa tttgcgaaag tttaaatttg catttgggtg gatttatctt
     7081 agcttcgcaa gaatttgtga aattttttaa aaaacaaagt tatggcaata tcatcaatct
     7141 tagctctatt atgggggttt ttgcgcctaa atttgaaaat tatgaaaata ccaccatgca
     7201 aagttctttg gaatacagcg tgatcaaagc aggaattaat catcttggtg cttggctcgc
     7261 aaaagagctt tttaatacaa acattcgtgt aaatacctta gcaagtggtg gaattttaga
     7321 taatcaagct aatatttttt tagaaaaata ccgcaaatgc tgcgcaagta agggcatgtt
     7381 agatgcagaa gatatttgcg gaaccttggt atttttactc agtgatgaga gcaaatttgt
     7441 cacaggacaa accttagttg tagatgacgg atgggggctc taatgaataa tgaacttttt
     7501 ttaaaaaata cccaagcgct ttttgaagta gaccaacctt tagcatatgc gttaagaatt
     7561 ttaaaaaata tcgaaaatta taatatagat aaaaatagtg atggtttaaa tataatcaat
     7621 aagcaaatgc aaaaaatata tgaaaatccc aatcaagaac ttttagatca acttgtctat
     7681 tttcaaactc actataaaaa atatcctgtt ttattttttt atggttttgg aaatggtatg
     7741 ctttataaaa ccttgtgtga gaataaaaat cataaacata tcattgtctt tgaaaacacc
     7801 ttagagttaa tagctttagc ttttagtttg tttgatttta gtcaggaaat aaaaagtgaa
     7861 aaattaatcc tattttatac accaaatatt acaacagcac aacttactac actttttact
     7921 catccaaata tttataattg tctcaaaatt tataaattgc acatacattc taatttttat
     7981 caacaattat acaaccaaga gataaaaaat ttaaacacaa aactaagtga aactattaaa
     8041 tttatagctt taaattatgg aaatgatcct aaagattctt taataggcat aaaacacacc
     8101 ttagaaaatc ttccaaaagt tttaaaccat gggatttttc aagattttct caaagaaaga
     8161 aggggtaaag ttaaaaatgc tatcatagtt tcgacaggcc caagcctaac caaacagctt
     8221 cctttattaa aaaaatatgg tcataaaatg accatatttt gtgcagattc ttcttatgcg
     8281 atacttgcca aagcgggtat caaaccagac tatgttttat ccttagaaag agtgcattat
     8341 accagtgaat tatttaataa tgattttaaa gattttgata aagatatttt atttattata
     8401 agctctttaa ctcacaaaaa tactcttcac tatcttgaaa aaaacaatag aacatatatg
     8461 cttgtacacc gtcctctaga atctgcagga atactaaagc ttgataattt tggatatata
     8521 ggagttggat atagtgtagc caatatggct tatgaactag caagtgcttt aagacatgaa
     8581 aatatcattc ttataggtca agatttagct tatgctgaag atggaagctc tcatccaaaa
     8641 gattatcttt acctagagca agcagataat acagacaata ctactacttt agcatatgga
     8701 aaaaatggac tagtaaaaac aacattgaca tggaatttat tcagacaaac ttttgaaaaa
     8761 gacatatttt ggacgaaaga aaaattaaat atcaacacct ataattgcac cgaaggtgga
     8821 gcatatatag aaggcagcat agaaaaacct tttctttggg cttgtgaaaa tttattagat
     8881 gaaagcctca acaaaccttt ttcttttcca aaaagtttat caaaaaaaga ggcgaatgat
     8941 aagatcgata aaataaaaaa aatactacaa agtgctattt tgcaagcaaa taaattgatc
     9001 aaaagcactc aaaaagaact taataaactt aaatttgagt taaatagaga tgaaattaat
     9061 cttcaaacct tagaaaaaat tcgaaaaaaa ttacttatct cttttaaaga atataaaaaa
     9121 cttaaattgt ttaatgagct cagtagagct ttatattttc acaatgaatg tgaaattgta
     9181 aaatatgaag ctatggatga tgaaaaccaa aaaaaatatc tatctcactt tttaaaactt
     9241 cagtataatt ggtttgcaca aggacttgga tatctagata ctcaaaacaa aatcatacaa
     9301 gaagctttac aaaattggca ttttgacgat ataaaagaat gaaagaatac acaggaaaag
     9361 aaatgaattt tacctcaaat caacaagaaa tatttaagca aaatatcaat gctctagtta
     9421 acgaaatact tagaaaaaaa ttacaaaaaa ttaaaaatac taaatttgaa cttctcttgg
     9481 gtaacgataa cctagatatc aatttaagaa atacaaagga taacaccctt ctttatataa
     9541 ataccattga tgaattaaac tctatgttag aaatttacaa tgacaaatat ttactttatc
     9601 ctgtgcttta tttctatgga tttggaaatg gaattttatt taaagccttg cttcaaaaca
     9661 aacaccgcca acatatagta atttttgaaa atgatataga gattctttgg ataatgtttc
     9721 atcttttgga tttttcttgt gaaattaaaa aaaataaaat tattatattt gataccaatg
     9781 aaattaatat caaagattat gaaatgttaa cccttacaaa accatttata tcctttttaa
     9841 gaatttattt tttagaactt tcaagtagct attatgaaaa aatgaataaa gatatccaaa
     9901 aagttaataa aaatttaatg gaatacttta aaaaagctat gataggctat ggtaatgatc
     9961 cgctagatgc tcttcaaggt atagaacaat ttgttcataa tcttcccaaa atgcttactc
    10021 attctagcta taaggaatta atcaacaaaa gaaaaaattt aagcaaaact gctatcattg
    10081 tttcaacagg accaagttta atcaaacaac tacctttgct tgaaaaatat caaaataaag
    10141 ccacgatttt ttgtgcagat tcttcttatc ctattttggc taaacataac ataaagcctg
    10201 attatgtctg catgcttgaa agaacaagtt taacagccga attttttaat catgatttta
    10261 aggattttga taaagatata gtctttatat gcgcatcttt gatacaccct aatgctatcg
    10321 cttatctaga aaaaaataat agagaatata tactcatatc aagattttta tcttttgctc
    10381 tctttattgc ttgtcatgat tatggatatt ttgatcaaag tcctagtgtc gcacatatga
    10441 gctatataat agcggctaag ctttgtcata aaaatatcat ttttatagga caagatttag
    10501 cctatgcaga aaatggggat tcgcaccctc aagaatatca aaactcatca acatttgaaa
    10561 gtaatatata tcaaaaaata gaatgtctag gatatggtgg taaaaattct gtaaaaacgc
    10621 attctatttg gctactcttt aaacaaatta tagaacaact tattttagat tatccatata
    10681 ttaatactta taattgcaca gaaggcggag catggataga aggaactata gaacaatctt
    10741 ttaaaacaac ttgtgataaa cttctgctcg atgatttaaa caaacccttt attaagctta
    10801 aaaaaccaaa tattcaaaaa caaaatgaac ttatgctcaa atcttatgca aaaatctaca
    10861 aaagcataaa acactgtata gaatttaaaa agcagacttt agctactatt gaggatatag
    10921 aatctagcta tacaacttta aattatttaa gcttagaaga aagtaaggaa attttagata
    10981 tcttgattca aattattgat aattttaaaa ccaaactaga aaatgttaat atggtcgatt
    11041 tttatgaaat tttaggaccg cttttaatgc aatttgaatt gaatcttgct aggatttatg
    11101 ttttaaatcc aaaaactcta gaagatagtt ttaataaatc tgtattatgg atcaaagaac
    11161 atttagaatt tatacatatg gtttatggac acatagaagc ccaagaaaat gctttattta
    11221 aaaatatcat accattagaa gaagagctga aaaaaagagg gtttaaaaaa tatttacaaa
    11281 ggataaaaaa tgcaaacaag tgatattttt aaaaaaaatt tagattctat gaaaggaaat
    11341 gtatataaga agttaaaaga agagctaaaa aattttcagg agcttagaga cttttctttt
    11401 accataggaa aagattcttt aaatataaat ctgatttgta aaaaaaacct aaaaaaaatt
    11461 taccaagatc cagtacaaga acttaatgaa aatttagttt tttatcaaca aaattactat
    11521 aatcatcctt ttttattttt ttatggatta ggtaacggaa ttttatataa agcactatta
    11581 aaaaatctaa accataaaag gattgtcatt atagaaaagg aactagaaat tatatttatc
    11641 gttctaaatt tcattgattt tagtgagtat ttgttcaatg ggcgcatagc tataatatat
    11701 tcttctgatt ataataacaa caccgcagag cttatttttt cattgacaaa tattaatctt
    11761 ttttttaaaa catatcaaat caacattcac tctgcttttt atgaaacata tcaagaagat
    11821 attaaaaaaa ttaataatat caatcttcaa actataaaat atcttactct aaaaaaaggg
    11881 acagaccctt cagatgctat gttaggaatc gaacaggcta tttggaattt accagaaatg
    11941 ttcaagcatt atagctataa agaattatta caaaaaagaa agggtttaaa taaaaacgcc
    12001 atcattgttt ctacaggacc ttcgctcact aagcaacttc ttttactaaa acaatatgcc
    12061 aacaaggcta ttatattttg tgtggactct tcttattcta tacttgctaa gcataacatc
    12121 aagcccgatt atgtattatc tctagaaaga attcctttaa cttcagaatt ttttaataat
    12181 gattttggag aatttgacaa agacgttttg tttattttac caagtttaac tcaccccaat
    12241 tcaatcaaat acttaaataa atttaaaaaa gattacatgc taatagctag atatctacct
    12301 tttatgattt ctttaaacct taaagataat ggttatatag gaggcggtat gagtgtggct
    12361 catgtagctt acgaattagc aatttcatta gagtgtaaaa atattatttt aatagggcaa
    12421 gatttagctt ataataaaga agggaaatcc catacagatg actatataaa cctaactttg
    12481 cacgaaaagg attttgaacg agataagggt cgctttacca ctacagctta tggtggcaag
    12541 ggaacagttg aaagttctga aatttggact ttatttagaa aaatatttga aaactatgca
    12601 atcaataata aaaaatgcat taaaatctac aactgtactg aaggtggggc aagaatagag
    12661 ggaaccatag aaaaaccttt tgaggaaata tgcgaagaaa tacttgaaag cgaaattaaa
    12721 aaacctttaa taaaactaaa aaagaagaca aaaaaagaac aatttgaaca tatgctcaaa
    12781 agctatcaaa aaatcaaaaa aaatatacaa cttgcactca gttttcaaaa agaatgcaaa
    12841 aaaactctta gaaaaattca aaaaatcact cttaaaaacg aatatattaa tatggatgat
    12901 attgtaaaag atatagataa cataagaaac aaactgagca acaaaagata ctttttttta
    12961 catgaaattt taggacctag tctatatcat gaagaaagtt taattgcccc tatttatatc
    13021 caaagtgtta acaatgaaag ccaaagacaa aataaaattc tatcttggat ttatgctaac
    13081 gaatctttaa ttgaaactat aattgatctc atagaaagtc aaaacataag aattaaaaaa
    13141 gccattatcc ctttacaaga tgaattagaa aaaagaaatt taatctaaag agcaaaaatt
    13201 tgctctttag aaaaattatt gtaaaagttt taagacattt tgttgcacag cgttagcttg
    13261 gctcatagca tatgaacccg actgcgcaag gatattgtac ttagaaaaat ttgcactttc
    13321 tgcagcgaaa tccacatctc ttatggttga ttctgctgct ttaacattta cctgggttac
    13381 ggtaatatta tttatcgtta cttggagctg attttgcaca gcacctatat ctgctctgat
    13441 ttgatcaaga ttggtaatag cagtttctgc tatatccatc acagccattg cacccttaag
    13501 tgtagttaca cctgcagttt catcatgagc acttactgta cttattctta aagctgcaaa
    13561 ttgagaatta cctgaaccag cagagaaacc tgaaccagca gaaacaacat aggtgctact
//
LOCUS       DAPIWU010000045        13335 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.045, whole genome shotgun sequence.
ACCESSION   DAPIWU010000045 DAPIWU010000000
VERSION     DAPIWU010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13335
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.045"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            42..1067
                     /locus_tag="RJ285_001001"
     CDS             42..1067
                     /locus_tag="RJ285_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDV7383791.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            1161..2498
                     /locus_tag="RJ285_001002"
     CDS             1161..2498
                     /locus_tag="RJ285_001002"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDV7383792.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            2491..2961
                     /locus_tag="RJ285_001003"
     CDS             2491..2961
                     /locus_tag="RJ285_001003"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HDV7383793.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            2945..3397
                     /gene="hemJ"
                     /locus_tag="RJ285_001004"
     CDS             2945..3397
                     /gene="hemJ"
                     /locus_tag="RJ285_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HDV7383794.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(3394..4740)
                     /locus_tag="RJ285_001005"
     CDS             complement(3394..4740)
                     /locus_tag="RJ285_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDV7383795.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPKEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKDKGFDFTSMYVGGGTT
                     LINEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSQELQEKISKALGILPIFSIDLIFNLPGQSEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIEDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATKFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSTSMEFKAETN"
     gene            4868..5119
                     /locus_tag="RJ285_001006"
     CDS             4868..5119
                     /locus_tag="RJ285_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383796.1"
                     /translation="MNKAKIVQNLNALFKQRAEFYSYFDENIAKINDTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKVYEITDADLDKDF"
     gene            complement(5142..6620)
                     /gene="cmeC"
                     /locus_tag="RJ285_001007"
     CDS             complement(5142..6620)
                     /gene="cmeC"
                     /locus_tag="RJ285_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HDV7383797.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGIEQNEDTSKNIKEESKNLDISFRE"
     gene            complement(6613..9735)
                     /gene="cmeB"
                     /locus_tag="RJ285_001008"
     CDS             complement(6613..9735)
                     /gene="cmeB"
                     /locus_tag="RJ285_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HDV7383798.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            complement(9735..10838)
                     /gene="cmeA"
                     /locus_tag="RJ285_001009"
     CDS             complement(9735..10838)
                     /gene="cmeA"
                     /locus_tag="RJ285_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HDV7383799.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            complement(10933..11565)
                     /gene="cmeR"
                     /locus_tag="RJ285_001010"
     CDS             complement(10933..11565)
                     /gene="cmeR"
                     /locus_tag="RJ285_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HDV7383800.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINARLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            complement(11552..12928)
                     /gene="ccoG"
                     /locus_tag="RJ285_001011"
     CDS             complement(11552..12928)
                     /gene="ccoG"
                     /locus_tag="RJ285_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HDV7383801.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFSLPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYERQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            13088..13300
                     /locus_tag="RJ285_001012"
     CDS             13088..13300
                     /locus_tag="RJ285_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDV7383802.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
BASE COUNT         4465 a         1985 c         2119 g         4766 t
ORIGIN      
        1 ttattatttt attttaattt atctttaata ggagtttata aatgaaagta aaatcattgc
       61 taatcgcatc cttagttgct ttttcaagct taaatgctgc aagtcttata gatgaagcta
      121 aaaattcagg tcttgttgcc ttaccaaaag atcaaaaagg cgttgatgaa attttaaaac
      181 aaaatggagt aaaggctagt gaatttactc ttgaaaaagc agagcttggc aaaaagctct
      241 attttgaacc acgtctttca aaaagtggta tcatttcttg taatacctgt cataatgtag
      301 gacttggtgg aacagatgga atcagtactg caataggtca taaatggaca gcaaatcctc
      361 atcatttaaa ttcaccaaca gtttataatg cagttttaaa taatactcaa ttttgggatg
      421 gtcgtgcagg aacattagcc gatcaagcta aaggtccaat ccaagctgat cctgaaatgg
      481 caactcctgc taaacttgca gtagaaaaaa tttcatcttt gcctgaatat gtgagtgagt
      541 ttaaaaaaat ctatggtaaa agcggtgtaa attttgacaa tattgctgat gcaattgcaa
      601 attttgaaag aactttgatc actccatctc gttttgataa atttttagaa ggcgatgaaa
      661 aagctttaac aaaagaagaa caaaaaggct taaagctttt tatagataaa ggttgtgtag
      721 cttgtcataa tggtgtgaat ttaggtggca atatgcaagc gtttgaagtt gctggtaaat
      781 ataaatttgc aaatttaggt gattttaaag gtgatgcaaa tggcatggta aaaactccaa
      841 ctttaagaaa tgttgctgaa actgctccat attttcataa tggtgcgatt tggaatttaa
      901 aagatgctat taaggaaatg ggtagtgtgc aacttggcat taaaatttct gataaagaag
      961 caaaaagtat tgaaactttc ttaaaatctt taacaggaac aaaaccagca attgtttatc
     1021 cacaacttcc tatttctact gaaaaaactc ctaaacctga actataaggt tccaaacaag
     1081 ctctaatttt agagcttgtt taaatttctt tatcttagct ttgttataat tgtctttaaa
     1141 ttttgctaga aaggtttgca atgaaacttt ttggaactga tggagttcgt ggaaaagcgg
     1201 gtgaattttt agatagtttt ttggctatgc gtttagcaat ggctgcgggt atttatttta
     1261 aagataaaag tattactaat aatatcttag taggaaaaga tacaagaaga agcggctata
     1321 tgatagaaaa tgctattgtt tcagggctta cttctatagg atataatgtt atacaaattg
     1381 gtcctatgcc aactcctgcg attgcattct taactgaaga tatgcgttgt gatgcaggga
     1441 ttatgatttc agcttctcac aatccttatt atgataatgg tattaaattt tttgatgctc
     1501 atggaaacaa actcagtgaa gatatagaga aaaaaataga agaaatttat tttgatgata
     1561 agcttataca agcctctaag gtagatatgg agaaaattgg tcaagcgaaa agaattgatg
     1621 atgttatagg aaggtatatt gtttctatta aaaattcttt tccaaaagat cttactttaa
     1681 agtctttgcg tgtggtttta gatgtggctc atggggcagc ttataaggta gcacctactg
     1741 tttttaagga attaggtgct gaagttatag taatgagcga taaacctaat ggacttaata
     1801 tcaatgaaaa ttgtggagct ttacatcctg caaatttagc tgctgaggta aagcgtttgc
     1861 gtgcagatgt gggctttgct tttgatggtg atgcagatcg tttggtggtt gtagatgaaa
     1921 aaggcgaagt ggctaatggg gatagtttat tgggcgtatt ggcactttat cttaaagaac
     1981 aaggtaaatt acaatcaagt gttgtggcta ctataatgag taatggtgct ttaaaagagt
     2041 ttttaaataa acatggtata gaacttgata cttgtaatgt tggcgataaa tatgtgcttg
     2101 aaaaactaaa agccaatggt ggaaattttg gtggagaaca aagtgggcat attattttta
     2161 gcgattatgc aaaaactgga gatggtttga tagccgcctt gcaatttagt gctttaatgc
     2221 tttctaagaa aaaatctgca agttctattt tgggtcaagt taaaccttat cctcagcttt
     2281 taaccaatct taaaattgca gaaaaaaaag atttagataa aattaaaggt ttaaaagaat
     2341 taaaaaaaga tttagaaaat aaaaatatta ataccttatt tcgctattct ggaacagaaa
     2401 atttgataag acttttacta gaagccagag atattaagct cttagaaaaa gaaatgaaaa
     2461 atgttgtgga gttttttaag aaagctttaa atggctaaaa cttttaaatt tattttttat
     2521 ttttggggtg cctttgtttt ggtttttgcc cttgatcaat gggtaaaatc cttaacttta
     2581 gcaggattta gatggcagag tgaatactta gatttaactt atgctctaaa tacaggcgta
     2641 gctttttcaa tgttgagttt tttagaacat aatttaaaat atttacatct tgctttaatt
     2701 ggcgtgcttt ttatttatct tttttggcaa agaacacttt taaaaactca tagcatagct
     2761 tttggaatga tgcttggtgc cggcgtttca aatttattgg atcgttttat acatggaggt
     2821 gtagtggata tgtttttttg gcataaatgg tttaattttg ctatttttaa tgttgcagat
     2881 gtcatgataa atataagtgt ggctttgatt ttaatacaag aaatatttaa aaaaaggaaa
     2941 aaagatgaca gaatggatta atgattatta tttttggatt aaatgggtgc attatttggc
     3001 atttgtttct tggatggctg gactttttta tttacctcgt ctttttgtgt atcatgctga
     3061 acataaagac aataaaggtt ttgttgaggt tgtaaaaatt caagaaagaa aactttatta
     3121 ttatatacaa actcctgcaa tgattgtgac tttaatcaca ggaagtttaa tgttgcatgc
     3181 tcataaggaa gttttaatgg taggtgcggg ttttatgcat gttaaactta cctgtgttac
     3241 acttttgatt attttccata tacataatta ttattgttta aaagctttag caaatgatac
     3301 ttctactaaa agtggaaaat attttagaat ttataatgaa tttccaacta taatgtttat
     3361 tattatcgct ctaatgatgg ttgttcgtcc cttttagttt gtctccgctt taaattccat
     3421 gctagtggag ttaagcggat caatattttc tttcatgata tcgatataat ctttattttt
     3481 aagacgctta tcatctctaa atactgcgcg cacaagatcc attcctgtgt aaaaatcttt
     3541 cattaaaacc acaaaaagat attgaccaaa tttggttgcg attaaagcat tttgatcttt
     3601 tatgatggca ccgcttgttt taagccctaa aagttctatg aaaagttctt tttcgagatt
     3661 gcaatttaga gttttgttaa atttatcaat ttctattttc cctgaaaaaa tttcagttaa
     3721 aaagacatat ttgataattt cttttttatc aaaacaagct ttggctatat tagcattttg
     3781 tttttcttgt ataaatttgg cataatcatt tagattaaat gcattaatta aaagctctcc
     3841 atctaagaag ctaaatgctc cactacctac tcctaggtat tcatgatgag agctaacata
     3901 ttcatcattg agtttatttt tttccaaaga aaaactccaa ccattgtttt gggtatagtc
     3961 tttaaaaaat tcgcgtatga tttgataata agtaaattca ttatcttcaa tgctcactcc
     4021 taaacttttg gcgatattgt ctttggtaag atttgatttc attaaaggat aggttgtgat
     4081 ttgttgcggg gctaaatttt tggcaatttc taagtcattt aaaagttgtt tttcgctttg
     4141 tcctggaaga ttgaaaataa gatctatact aaaaataggc aaaattccta aagcttttga
     4201 aattttttct tgaagttctt gagatgaacc aaatttatta tatcttgcca ctttttttaa
     4261 agtttcatca tcaaaacttt gaatcccgca acttaaacga tcaattatgc ctttaaacat
     4321 agaaagctta tttggatcaa tatgatttgg atcgctttcg catgaaattt cttttatatt
     4381 aaataatttt ttacaaagtt ctaaggtttt taatagttcc tcttcgttaa tcagtgttgt
     4441 accaccaccc acatacatgg aggtaaaatc aaaaccttta tctttcatga ttttaatttc
     4501 ttctctaaga ttttgaaaat atactttggc taaattttca tcataataat atttatgaaa
     4561 gctacaataa ggacaaaaag tatggcaaaa aggtacatga gcataaagca tatagctttt
     4621 atcttgtttt ggaatttttt ctttgggttg ttttaaaagt tcaacattga aacctttttg
     4681 aagagatttt tccatcatag tatgagagta ttttaaagct aaattttgaa ataaattcat
     4741 aagtggccta tatattaaaa tatttaagat ataactttat caatttttag ctaaaatagg
     4801 agtaaatttt ttatttctta aataaaaaat gggattaagt ttttaaatta tttaaaaagg
     4861 atataaaatg aataaagcca aaattgttca aaatttaaat gctttgttta aacaaagagc
     4921 agagttttac tcttattttg atgaaaatat tgccaaaatc aatgatactg aagtatttga
     4981 ttttaagaat gctaaaaatt taaatccaga agaggtatat aagcaatttt atcattttga
     5041 ttatgctata agaaaattat tgcctgctat ttacaaggtt tatgaaatta cagatgcaga
     5101 tttagataaa gatttttaat ttatttagag aatagaacga actattctct aaaagatata
     5161 tctaaatttt ttgattcttc ttttatattt ttactcgtgt cttcattttg ctcaattcct
     5221 ccaccaaatg ctttgattac atctactatg gaattggcat aagaatattt aatattatta
     5281 aaagcaaccg cagcattaag ccaattttga cgtgcctcta aataatcttg caaagacatt
     5341 tctcctatat catagcgttc tttagcaatt tcatagattc ttttgtaaga ttgttcgctt
     5401 gcttgtgcat tatcgtattg taagcgtata gtttttctag ctactaaagc atagcgaatt
     5461 tctccaaaag cagtaatcaa agtattttga taatttacaa aagcttcatc tttattaagc
     5521 ttggctaaat ttacattttg gtaaatttca ccccaatgaa aaataggcag agtaaagttt
     5581 ccacctatat tccaagtctt agaacctcct ttaaccaagg tatctaaatc cccgctttca
     5641 aatcccaata atcctgttaa agaaaggcta ggtaagaaag ccgtgcgagc tactccaaca
     5701 agataatttt gctgagttaa tttttctaaa gaagagccaa tatctggacg ttgaagcaag
     5761 atggtgcttg aaattccagt tggaatgtca aattctttaa gattaaaaac ttgatagctt
     5821 tgatttttgt aaagtatgtc atttaaatca tttgaagtta aaatttttaa agctttaagg
     5881 taattttctt tatttaactt tgcttcatta tattgcaaag ccatactttc taagttggct
     5941 cttgcttgag caagttcata ttcacctaca gcaccaactt gaaatttttc atcattaatc
     6001 ctataaattt cttttgcaga ttcataggct tctttaagag cattttcatt ttcataagca
     6061 tttacaagat taaaataagt ttgaactgta tttgaaataa cagaaagtct tgcagcttca
     6121 taatcatact cacttgcttt aaagcctgat tttgaggcgc gatatgtatc gcgatatttt
     6181 ccccaaagat cgatttcata gcttaaatta agtcccattt taaaatcatt accgtaactt
     6241 acttccccag ttcgattgct tggagcattt atagctgttt ttgcacgact tccgcttgcg
     6301 ctaccatcaa attttggcaa caaactgcta aaatctatac ctaattgagc agcagcttgt
     6361 tccatgtgta tgaaagcaag ttttaaatca ttattatttt taagtgctaa atcaaccact
     6421 ttatttaaat tttcatcatc aaagtctttc caccaatttt ttgtgataga gctattgttt
     6481 tctttttccc aggataaggc tccaagctta ttatcaatgc tatagtttgc ttcgggaata
     6541 tttaaatttg gacttaaaga gcaagctgaa atcaaaagag taaaacttgc tatagcgcta
     6601 attgaaatta ttttattcat gaaccttacc tcttttttta tctagccatt cattaaaatt
     6661 ttctaaaaga tagaaaaata aaggcacaaa gaatatcgct aaagttgatg ctgcgatcat
     6721 tccaccaata agccctgttc ctaaagagtg tcttgaagca cttcctgctc ctgttgcgaa
     6781 aatcattggc aagaccccaa aagtaaatgc caaagaagtc attatgatag gacgaaaacg
     6841 aagttttgct gctgcaacag ctgcttcaaa aactccttta ccttttttaa agcgctcttc
     6901 cattgcaaat tctacgatta agatagcatt tttagctgaa agtccaatca agagcaaaag
     6961 tcctgtttga aaatatatat cattgctaaa tcctcttaaa tataccaata aaaatgatcc
     7021 aaataccgca aaaggcacag ctgttacaac tgctaaaggt ataagccatc tttcatattg
     7081 ggcagctagg attaaaaaga caaataccat gcctaaagca aaagcatagc ttgctgttcc
     7141 tttgctagaa acttcttgat aagctgatcc actccaagct atggaataat catcccctaa
     7201 agtttctttt gctacttgag caatcgcttc tatagcttgg cctgaagtat aacctggtgc
     7261 gggttgacct tgaacttgtg ctgctgggaa aaggttgaat cgttttacat catcaggccc
     7321 tgaacttctt tgtaaagtta agaaagaatc aagtggtatc atttttccat catttgatct
     7381 tacaaaaata ttttttaatg catcttgtgt atttctaaaa tcaccttttg cgcggatatt
     7441 tacttggaag tttttaccta gcatagaaaa atcattaaca taataagtgc ctatagttgc
     7501 attcatcgtg ttaaaaacat cttgcatgtt aagattgtag tgttttaatt tatctctatc
     7561 aattataagc ttgtattgag ggaaagttgt atcaagggtt gttcttactc ttgatagctc
     7621 ttttctttgg ttggccacag caacaagttt atttacatct ttttgtattt catcatagct
     7681 ttttccgctt ttgttttgaa catacatttc aaaaccgcct gtgatactta atccaggtat
     7741 aggaggtaag cctataaata cacttgaagc attgcgatca aaagcaaatt ttttattaag
     7801 ttcggctata atttgatcag cgcttacatt tctatctttc caatcttgca aacctataaa
     7861 cattgcagcg gcattttctt tgagtgaact tgtaaaaaga tcaaatccta tcatagccat
     7921 tgcatcttta actccattag tttttaaaac ttcttggctt atgtgatcaa cctctgaaat
     7981 tgttctatgg agtgctgaag ctgaaggaag attaataatg ctaatcatca aaccttgatc
     8041 ttcttcagga actaaagaat ttggtactgc tttatagaga taaaaaattg ctccaagcat
     8101 aatacaaaaa attaaaacaa aacgaatggt tctttttagg atatatgcta ctcctgcgct
     8161 aaatacagag gtactccaat caaaaaaatc attaaatttc tttacaaatt taaatggctc
     8221 tccttcattg cgtcgcaaaa agagtgcaca taaagaaggt gttaaggtaa gagcaacaaa
     8281 acctgatatg gttacagata tagctaaggt aagagcaaat tgtctttgaa tttctccaac
     8341 aaaacctgat ataaaagaaa ctggtacaaa aacagcacaa agcacaagaa caattgaaat
     8401 aaccggagag ctaacttctt gcatcgcttg gatagcagca tcttttacgc ttatttgctc
     8461 attttcatgt aaaatcctat caatattttc tacaactata atcgcatcat ctacaacgat
     8521 ccctatggct aaaattaaag caaaaagcgt aagcaagtta atactaaaac ctaaaacata
     8581 aagtccagca aaagttccta acaatgaaac aggtacagct atcataggaa taagtgttgc
     8641 acggaaattc tttaagaaca tatacataac aatgataact aaaattagag cttcaacaaa
     8701 agttttaaca acttctttga ttgattctat tacaaatttt gttgtatcgt aaggaatttt
     8761 atatgttaaa ccttttggaa aattttttga aagttcttgc attttagctt gaacaagttc
     8821 tgctgtatgc aatgcgtttg cccctgattg aagattgatc ataattggaa ctgcatcatt
     8881 gccatttaat cgtccttgtg agctgtattg ttgtgatcct atttccacat cagctacatc
     8941 tttaagtctt aaaaatgatc catcattatt tgttcttaaa ataatgtttt caaattcact
     9001 aggattttgt agtcttcctt gcatagtgat tgaataaaca taaggggatt tttgggttac
     9061 aggttcttcg ccaattttac cagttgcgta ttgggcattt tggtcattaa ccgcagaaat
     9121 tacatcagta gctgtgattc caaatttatt taataaatca ggcttgagcc aaattcttaa
     9181 agaataatta cgatttccta tagcgtttgc atctccaact cctggaaccc tttttaactc
     9241 atctaaaaca tttaaagtga tatagttata tacatctact gcactcattg agccatcact
     9301 tgaatacata gaaattgcag caagtgttgt tgaggaagtt tttctaactg ttactccaag
     9361 ttttttaact gcatctggca tttttgcagt tgcggctgaa attctattat taacatctat
     9421 ggtggcttga tcaggatctg taccgatatc aaaataaaca gtcaaactca tagttcctga
     9481 agaacttgaa gttgaatcca tgtaaatcat attatctgcg ccattgattg catcttcgat
     9541 aggacttgca actgttgaag caatggtttg tgcatcagct cctgtgtaag ttgcacttac
     9601 tttaactgta ggaggggtta aagaaggata ttgttctata ggtaaatttg taagacctat
     9661 agctccagct aaagaaatga taattgcaac aactgaagca aaaacaggtc tttcgataaa
     9721 aaatttagaa aacattattg tgctccaatt tctttaactt cgctaccaac ttgaattttt
     9781 ttaaagttat ctaaaatgat tttatcgcca ttttgtaatc ctttgtcaat aatggcatat
     9841 tcattgtttt ggtagcttat atgtacagaa gatttttcta cttttccatt tttaacaaga
     9901 agaacataaa catcattttg attttgttta acagctattt gaggcacttt aaagccattt
     9961 ttttgtataa aaccttctga agtaattgtt gcaaaagcac ctggtaaaag tgttgagttg
    10021 ttgttgtcaa atatagcttt ggcttttact gttccactat tagcatctat aacagaatca
    10081 ataaaataaa gtttgccttg aacggtttct ccattaagat ttaaatttgc atgaatgctg
    10141 tctaaatccc attttccatt ttgagtatta cggactaaat ttagtttatc tgtatctgaa
    10201 ataaagaaat ctgcgtaaat aggatttaaa tttgtaactc taactagttc agttgttgaa
    10261 gcacttacat aatctcctat attaactaaa gcatctccta tagtaccatc aaaaggagct
    10321 tttatttcgg tatgatctag atcaattctt gcatttgcaa gctgtgctct agcacttgct
    10381 agactagctt ttgaattgtt aaatgtagca agagaagagt cgtattcctt ttgagagatt
    10441 gcacttttac taaaaagagc tttagaacga ttaaaatcct tgcttgcatt ttcgaaagtt
    10501 gccttagcca tcaaagcttg tccgtaagcc gaatcaacac tagctttaaa tttgtcttgt
    10561 tctataataa ataatgtttg tccttttttt actttatctc cagctttaaa aagtttattt
    10621 tctattacgc cactaacttg aggttttata atgacatcat aatcactgac aagtttagca
    10681 gggtaagtaa aactaagtgg taaatcttca gatttagcac tcatggttgt tacaggttga
    10741 ggcggcattt gtatttttgg tgcttcttct ttgctgcaag cagtgagtaa aagcacaaca
    10801 cctaaagcta aaatagtatt tttttgaaat aatttcatgg ttttgccttg aaaaattaaa
    10861 ttaaaaattg taatttttat tacaaaaatt tttggctaat tatatcttaa ttttggttaa
    10921 taaaattatt ttttaagctt tggagctatt gattccattt agaaaaacat ttacaacaaa
    10981 ttcaacatgt tctttttgtt cttttttatt ttttaaacga gcattaatta aaacattaag
    11041 atgatgataa ggttctttta acatagtgca aaaaagaaca gcaagttttt ctgcattttt
    11101 tttcatataa gaattatttt gttgcttgaa aaaacccata agtatgttat aggaaaaatt
    11161 ttgttgatta ttttctatcc aattggcaag atgtctatct ttgtcataaa cttgagaata
    11221 gataatttta ccaaaagcta cagcttctgg ttgattgaaa atttctataa aagctaaacc
    11281 aaaagaagtt aaaatttctt ttaaagtgcc attttcaatt tcttgtgttt tggaataaat
    11341 aagatgaaag tgttttttac atatgtcatc taaaatttca aagaatagcc cttctttact
    11401 tttaaaacca tcataaatat tagaataaga tcctccagat aatttaataa tatcactcaa
    11461 acttgtttct tggtatcctt ttgttaaaaa aagctctaag gccactgctt tgattttttc
    11521 ttgtctggct aaaacttttt gtgatggtgt tctatttgag ttcattttta tcctttataa
    11581 gagtgctttt agggtataca aatatacttt ttctaaaaac cgaaattttt tcattatcct
    11641 ttgcgtaagc ttttatatgt aaaggaaaga ttacgtcttt tttatcatta tttgctaaat
    11701 tttttgtagc cctgataaca actatttttt tgacttgttc tcctgctttt aatttaaaag
    11761 gtttgtttgg tcttatgatt tcaattccat catttattcc ttctaaattt gctgtaaaat
    11821 aatattcatg aggtttagaa tctgtatttt gaaacaaaaa ggtataagca tttgaaatga
    11881 ctaattcacc tttaacattt gaaatattat ataattcact actacgattg atatttaaaa
    11941 gcatgctttc ttttttgctt cccatgatga ttaaagccag taaagcaatt aaaagaacta
    12001 taaaatatgc tatcgttcta aatcttaaat aatgaacctt agaacgcgtt tcaatagctt
    12061 ttgcacttgt ccaattgatc aaacttggac gattaaattt gctttgaacc ttagagcaag
    12121 catcggcaca ttcaagacaa ttaatacatt caagttgcat tcctttgcgt atgtcaatat
    12181 gagttggaca gatactaaca caggcttcgc aacctatgca ttctccctca ggcggttttt
    12241 tatgaagttt ggtgtgtcca tcatagatca agcccccgcg tttttcatcg tagatcactt
    12301 gcattgtatc atgatcgaac attacagatt gtattcttgc ataaggacag acataaacac
    12361 aaaatttttc ttgtaaatag gtaatatcca aagtaaaaag taagctagca caaaataaaa
    12421 ttccaagtaa aagtagatgc tcgccaggat tttgaatata attgaaaaaa tcttcaggag
    12481 gaataaagta ccaaagtaaa ttactaacag caactaaaga tataaaataa aaaattatca
    12541 ctccaagaaa ttttttaaaa tattgcctct catattcttt ttgtttgtta ttgatatttt
    12601 tgcgaatttt aagaaattta gtttgtatga tatctctata tataactcta aaaatcgttt
    12661 gtggacaact ccaagcacac caaattcttc cacctaaagt tgtaataaaa aaaataaata
    12721 aaaaaagaaa tataagaaca aaaggcatga gataaaattc ttgtgttgaa aaagaaataa
    12781 aaaataggtt taatttagaa tgatcaaaac ttaaaagaaa aaaatgattc tcattaattc
    12841 ttatgaaagg tagggaaaat atgataatac ttgcaattaa atatacaaaa tatcgttttt
    12901 ttgtatagtt tgtaatgtgt ccttgcattt ttagacctta attataattt tttagcactt
    12961 tgtaattaag gattataacc gataaaaact aaaacaattt ttaaatgctt tctaagttag
    13021 aattaataag aagtgtttta taattatatt tcacaacaaa aatttacaca gaaaggtggt
    13081 gaggactgtg ccaggaatca aggtgcatcc taacgagtct tttgatgaag cgtatcgtaa
    13141 attcaaaaaa caagtagata gaaatctagt tgtgactgaa gtaagagcaa gaagattttt
    13201 tgagcctatg actgaaattc gcaaaaaaca aaaaatttca gcacgcaaaa aaatgcttaa
    13261 aagactttat atgcttagac gctacgagtc aagactctaa cccaaaagcc cgaaagggct
    13321 tttttatatc tacaa
//
LOCUS       DAPIWU010000046        13207 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.046, whole genome shotgun sequence.
ACCESSION   DAPIWU010000046 DAPIWU010000000
VERSION     DAPIWU010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13207
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.046"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..241
                     /locus_tag="RJ285_001013"
     CDS             <1..241
                     /locus_tag="RJ285_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDV7383803.1"
                     /translation="TIKHYLYDFLYQIKITIDETESKMMKEKDVIDYFIKNKSLIYTF
                     FNIFENELNHLKQTHPHIIDSWKYYKEFEKIYKDK"
     gene            complement(251..2104)
                     /locus_tag="RJ285_001014"
     CDS             complement(251..2104)
                     /locus_tag="RJ285_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDV7383804.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITGYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECHKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIQVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKNFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(2086..2523)
                     /locus_tag="RJ285_001015"
     CDS             complement(2086..2523)
                     /locus_tag="RJ285_001015"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDV7383805.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            complement(2520..2762)
                     /locus_tag="RJ285_001016"
     CDS             complement(2520..2762)
                     /locus_tag="RJ285_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383806.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            complement(2752..2982)
                     /locus_tag="RJ285_001017"
     CDS             complement(2752..2982)
                     /locus_tag="RJ285_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383807.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            3137..5110
                     /gene="uvrB"
                     /locus_tag="RJ285_001018"
     CDS             3137..5110
                     /gene="uvrB"
                     /locus_tag="RJ285_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HDV7383808.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSATSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKHNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPANERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            complement(5105..7036)
                     /locus_tag="RJ285_001019"
                     /pseudo
     CDS             complement(5105..7036)
                     /locus_tag="RJ285_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
     gene            complement(7039..7647)
                     /gene="kdpC"
                     /locus_tag="RJ285_001020"
     CDS             complement(7039..7647)
                     /gene="kdpC"
                     /locus_tag="RJ285_001020"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HDV7383809.1"
                     /translation="MFRTLLSFFVVMLILCTLVYPFALNTVAKFIFPYQSSGSLVDKE
                     GRPTLDVSKAVGSKLLGQDFNKPYFLHSRTSVSNYNTSDTNESSVSLGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            complement(7649..9704)
                     /gene="kdpB"
                     /locus_tag="RJ285_001021"
                     /pseudo
     CDS             complement(7649..9704)
                     /gene="kdpB"
                     /locus_tag="RJ285_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
     gene            complement(9714..11403)
                     /gene="kdpA"
                     /locus_tag="RJ285_001022"
                     /pseudo
     CDS             complement(9714..11403)
                     /gene="kdpA"
                     /locus_tag="RJ285_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            complement(11413..11594)
                     /gene="kdpF"
                     /locus_tag="RJ285_001023"
                     /pseudo
     CDS             complement(11413..11594)
                     /gene="kdpF"
                     /locus_tag="RJ285_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            complement(11736..13160)
                     /locus_tag="RJ285_001024"
     CDS             complement(11736..13160)
                     /locus_tag="RJ285_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDV7383810.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCVGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIVLVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIVIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAVLGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMVAGYL"
BASE COUNT         4743 a         2345 c         1753 g         4366 t
ORIGIN      
        1 aacaattaaa cattatttgt atgatttttt atatcaaatt aaaataacta tagatgaaac
       61 agaatcaaaa atgatgaaag aaaaagatgt aatagattat tttataaaaa ataaatcact
      121 tatttacact ttttttaata tatttgaaaa tgaactaaat catttaaaac aaacacatcc
      181 tcatattatt gattcttgga aatattataa agaatttgaa aaaatataca aagataaata
      241 atcatatcac ttacacaaaa tcaataggat caatatccgc acttgcattt ttaaattgca
      301 aaatataatt ttcaattgcc actaaagctt tatgattttc acttctaagc aacaaataaa
      361 aacgatattt tccatacagc atttcaactc cacaaattcc atagcctacc aattctacct
      421 gtttgatatt tctaaattga gaagcaaatt tttcacaaag tttttgtgca cttttttgat
      481 ctttatcttc tataagaact cttaaaaggc gtttaaatgg ggggtaaaga tcttttctat
      541 tttctaactc atcttttaaa aaagcatcat aattctctat atacctttca aaaaaagctc
      601 tattttttgt ttgcaaaagt actcttgctt cgcctttacg ccctgccctg cctgcaactt
      661 gcatagctaa agctaaagtt tcttcactcg ctctaaaact aggacgcaac aaatattcat
      721 caagccctaa aatcacactc aaatccacac tatgataatc atgtccttta gcaagcatag
      781 aagtgccaat aagtatatcg atcttatttt cattaaagtt ttttaaaata gtattaagct
      841 ttttaacgct tgtgatttca tcgctatcaa attttgctat ttttgctaaa ggcaaagcat
      901 tttgcaaaag ctctaaaagt tcagcagtcc ccatttttct agcttctaac atttctcctt
      961 tgcaacttgg acaattttgc tctattaaag aagtataatt acaataatga cattttaaaa
     1021 catttttctt tttatgcata ctcatagcaa tagaacaaaa aggacatttt atcgtttctc
     1081 cgcaatcctt acaaatgatt tgcctaaaat tagcccttgt aggtaaaaac actatagctt
     1141 gcttttgatg ttttaaactt ttttctaatt cacttaaaag cataggcgtt ataccaagct
     1201 cattttcatc atataaaaaa tgttttttac tctcaaaaaa agttcctttt aatctaaaac
     1261 ttttttgttt gtaaaagctc gttaaagatg gggttgcaga acctaaaacc acttgaatat
     1321 tatttttttg acccaaaaaa agtgctaaat ctcttgcatt gataaaaggc tggttagaag
     1381 ccttataaga attatcatgt tcttcatcta ctacaataag tcctaaattt ctaaaaggta
     1441 aaaacaaagc cgatcttgca cccgctacta aaagcacttc tcccttgcaa aaacgctcta
     1501 aatattcttg cttttttttc tttgaaattt tagaatgcca caggaaaaaa ttatccttaa
     1561 aatacacttc taaacgcttt tgcatttgtg gagtaagtgc gatttctggc atcaaaagca
     1621 aagcttgctt accctgttct aaacactctt ttatcaaaga aatataaatt tcagtcttgc
     1681 cactacccgt atcagcaaaa agcaaggaat tattttcttt ttgaagaaaa cttaaggcat
     1741 tttgttgttg attgcttagt ttaggagtat ctttaaaaaa cattttgtga cattcatact
     1801 taggactagt ttcaaaaaaa cccaaaacaa aaccaagttt tgaagcataa taataaacaa
     1861 taaaatttgc caattcaaac tgcaaaggag ttagaaaata ccctgtaatt tctttaattt
     1921 ctacggtttt aaaatcaggt ttttgacatt ctttaagcac gatagcttta aggttttttt
     1981 tagtttttaa atccactaat acttgtgtta aaggtttgat ttcatcaaaa ctatgaaaag
     2041 ttaaattatc caaatacaaa ccacaaattg caagttcata atatcttata tcagatcttt
     2101 gcatctagaa cttcctatac actttaacaa accttcttta gaatcataaa taaattcaac
     2161 catctcttta gcatttaatg caaatctata gtgattttta cctattttta tccaagattt
     2221 aaaatcagaa taaataggtg tatcaagcaa agaataatca caatcattta aacaataaaa
     2281 gagtttttct ttggcttgat tgttttgcgc attatctaaa atttctggaa aatttaaatt
     2341 tttaagtctc atttgactac gcattaaagc aagagctgag cttagcattt catagtccat
     2401 ttttaatttt aaaattttaa cctcatcttt tgtagtattg ataaaagata aagataagct
     2461 tgacaaaatt cccaaaatca aaatcacaaa aacaagctca agcagagtaa aagctttatt
     2521 cattttgtcg ggagttcttc attgattgct tttattagtt tcttaagttc tctttctaaa
     2581 atataatttt cataactttt tttaacaaac gcatctacaa agcgtttaag ttctattttt
     2641 ttagtaccgc cagaaatcaa agcgatatca tcttctaaaa aatttgcaaa ttcttcactg
     2701 cacttaacaa tgaaatcttt tgcattaaca ttaacaatga cttgttttag attatctgcc
     2761 aagaacagcc tctattttct tataaatatc ttcgctttct atattgcgag atttaagttc
     2821 ttcttctaaa cgcataattt gattactttt tgcttcattt tgtgctttaa cgcttacaag
     2881 ctcatttctt aaagcctcat tggcttcaca aacttcgtta tacttttcaa ttaattcatt
     2941 tactttatct gtcatagtat tgattatttt ttcatcaaac atatttttgc cttcttaaaa
     3001 aatttgtaat ttatggaaaa tattatttga tattgtagca gaaaaaaatt taaatttagg
     3061 tttttattgt caattaattt ttaattaaag cattttcttt taaaattttt tcaaaaaata
     3121 aaaataaagt agaaaaatgt tagaacttac cagcgaattt aaacctagtc ctgatcaaca
     3181 agaagccata aaaggtatag taaaaagtat aaaaaaaggc aacaaatatc aaaccttact
     3241 aggcgttaca ggaagtggaa aaacctttac catggcaaat gtcattaaag aacttaatat
     3301 gcccactctt atcatgagtc acaacaaaag cctttgtgca caactttata gcgaatttaa
     3361 aggctttttt tctaaaaatc atgtggaata ttttatatct tattatgatt attatcaacc
     3421 tgaagcctat attccacgca ctgatgtttt catagaaaaa gacagctcca ctaatgaaga
     3481 cttagagcgt ttaagactga gtgccactgc ttctctttta agttatgaag atgtagtttg
     3541 catagctagt gtttcggcaa attatggact tggtaatcca aatgaataca taggcatggt
     3601 tttaatcttt gaactaggta tgcaaatttc acaaaaagaa cttttaaaaa aacttgtaga
     3661 tatgggttat aaaagaaatg ataatttttt tgatcgtgca gattttagag ttcaaggaga
     3721 tattatagat atttatccag cttattatga agatgaagta gtaagacttg aattttttgg
     3781 cgatgagctt gatgctatgt atcattacaa tgttttagaa aataaaaaag gtaaagattt
     3841 aaaacgcttc atactctatc ctacaagcca gtttagtgta ggtgaaacaa gactaaaaca
     3901 agcgataaaa gacataaaag cagaacttaa cgaacgcctt gcttattttg aacatgaaaa
     3961 taaactcgta gaatatcaac gccttaaaca aagggttgaa tttgatcttg aaatgcttac
     4021 aagcacagga atgtgtaaag gcgttgaaaa ttatgcaaga catttaacag ggcttaaaga
     4081 aggtgatact ccttatacgc tttttgatta ttttgcgatt aaaaatagga aatttcttgt
     4141 tatagtcgat gaaagccatg tatctttacc acaatttaga ggtatgtttg caggagatag
     4201 aagcagaaaa caaactttgg tagattatgg ttttcgttta ccttcagcct tggataatcg
     4261 tcctttaatg tttgatgaat ttatccataa aaattgtcaa tttctttttg tttcagccac
     4321 acctgcacct ttagaacttg aacttagcaa agaaaacatc tttcatcaaa tcatgcgtcc
     4381 tacaggactg cttgatcctt taatagagtt aaaagatagt gataatcagg ttgaaatttt
     4441 atttgatgag gctaaaaaag tcatacaaag aaacgagcga gttttagtaa ctgtactgac
     4501 taaaaaactt gccgaagagc ttacaaggta ttatttagag cttggtataa aagtcaaata
     4561 catgcactca gatatcgatg ctatagaacg caatgaaatt ataagaggtt taagaagcgg
     4621 tgcttttgat atgctaattg gcattaactt acttagagaa ggactagacc tacctgaagt
     4681 ttcactcatt gccattatgg atgcagataa ggaaggcttt ttaagaagtg ctacaagttt
     4741 aatccaaacc atgggaagag cagctagaaa tgtcaatggt aaggttttgc ttttttgcaa
     4801 aaaaatcaca aaatccatgc aagaagctat ggataccacc aatgaacgcc gcaaacttca
     4861 aatggcttat aataaaaaac acaatatcac gccgacttca gttaaacgcc atattgaaga
     4921 gagcttgaaa aatgaagagg atttgggcga aatttatcgc aaaggtaaaa aactagaaaa
     4981 aatgcctgct aacgaaagag caaaacttgt caaagagtta agaaaacaaa tgcttgaagc
     5041 agctaaagca cttgagtttg aaaaagctgc tgcaattaga gatgagatta ataaattaag
     5101 ggatttataa taaaaatata tcccttgttc taactcctgc ctcattaagt aaagcactta
     5161 aaatttcata ctgaaagtct tgcaagggac gtttttcttt taaaactata cctataaccc
     5221 ctttagtttt ttcccatctt ctataggtaa atacatagca ttagcattag gcagggtatt
     5281 cgtacaaaca cctgctcttt ctttatttgt tgcaacccat tgagcaatag caatctcatc
     5341 ggcactaaaa caatttttta acatttgctt atcatcgtta aaaaaaaagc aaaggtttcg
     5401 ataaaatatt gtttttattt ataggataaa taataatagg caaatttaat aattttaaag
     5461 cttgatttcc aagttgttcc caaagctctt gtttgctttt cactcttgct aaattttcac
     5521 tattttcaag taaaatagct gttctataag ctcttttagt gagttcttta gattgcaatt
     5581 ttaatcttct agtaaaaaca gctgttaaaa atccaactat aaacatagtt gtaaaagtaa
     5641 taatatttcc actatcatga actttaagac taaaaatagg ttctaaaaag aaaaaattat
     5701 aaatcaaaac acttaccaaa gaagaataaa aggcgaaaat tttattgtca gaaataaaag
     5761 aagaagcaaa aactgctaaa ataaaaatca taactatatt acttggctga gtattaaatt
     5821 tatgaaatac aaaagctata aaagttgcta aaagcaaaac tcctgtgatt tttaaaaaac
     5881 ctaaaaaatc aaaacctttt ttacttcgta ttttaggagt agaaatttga ttttcattga
     5941 caagatataa atcaatattg ggtgcttttt tagcgacagc ttcaaaaatc tcttctttaa
     6001 actttttttt atctttattt ttgcctaaaa caattttaga gacattgcta aggcttgaat
     6061 actctgcaat ttgtcttgct atatcatcat catatacgct aatgatttca gcatcaaaac
     6121 ttttagctag ttctatattt tcttctaagg cttttgcttc tttaatattg ggatttttta
     6181 tataaagcgc actcaattta gcatgaaaag ctaaagcaag tcttgcagct gcacgaataa
     6241 cctttgcatt tgaagcatta atacaaacta aaatatgctc tccagtatga taagctaaat
     6301 catcattaat aagcctttgt tcacttgctc ttaaattcac tcttgaagca agtcttctta
     6361 aggcaatctc acgcaaagct ataagtcttt cttggcgaaa gaaattttca agtgctagtt
     6421 tagcttgttt ttccttataa attttaccat cttgcattct ttttaaaagc ttattaggtt
     6481 caatatcaac aagttcaaac ctgatcagcc tcatcaaaaa tacgatcagg aatacgctct
     6541 ttaacttcta tcttactgat attagcgact aaatcattta agctttctaa atgttgtata
     6601 tttaaagtag tataaacatc aatccctgct tttagaagtt cttctatatc ttgaaaacgc
     6661 ttttcattac gcaagccttt agcattagtg tgtgcaagct catctactaa aaccaaagca
     6721 ggctttctct taagggtagc gtctaaatca aattctttta atactatatt tttataagga
     6781 atttcaagat tagctatact ttcaaaacct tgtgttaaag ccattgtttc aggtctatcg
     6841 tgaggctcta tatagcctaa aacaacatca actccattat cccttaaagt tctagcttca
     6901 cttaacatag cataagtttt tccagaacct gcagcataac ctaagaaaat ttttaatttt
     6961 gcaagtttgt ttttttcttc ttccttagct ttaacctcaa gttttttaga atttgttcag
     7021 gactttgtct ttgcatgttt attctttttt catggcttta gcaatagcta tattaacagc
     7081 taaaacatta accttttctt ccccaaaaat ccctaaaaat ttagactcgg tattttcttg
     7141 aatgattttt tctagttctt ctttggtgat ttttgaagat tgacttatcc taggaatttg
     7201 cactagggct gcttgaagac tgatatgagg atcaagacct gatcctgaag cacttaataa
     7261 atccaaagga atttgttctt ttgtaatttg cggattttca tctaaaaatt tttgcaaatc
     7321 tttttgcaca cgctctttta aagcaggatt tgacatagca taattaaatc cacctaaact
     7381 tacactgctt tcatttgtat cgcttgtatt gtaatttgac acagatgttc ttgaatgtag
     7441 aaaataaggt ttattaaaat cttgacccaa aagctttgaa cctaccgctt tgcttacatc
     7501 caaagtcgga cgaccttctt tatctactaa acttccactt gattgataag gaaaaataaa
     7561 ttttgcaact gtatttaaag caaaaggata aacaagagta cacaatatta gcattaccac
     7621 aaaaaaacta agcaaagttc taaacatatc acactcctaa aattctaagt atccaagcta
     7681 taggaatatc aattattttt tatccctata aaaggtgcga tcataccacc caaaccataa
     7741 atacttaaat ttcttaaaag caaatgctcg cttttcatag gcttaaattt aactccacgc
     7801 atagcaatag gtatgagcaa aggtataata atagcattaa aaataagtac tgataaaata
     7861 gcgctttgcg gggtagctaa atgcataata tttaaaattt gcatttgagg taaacacact
     7921 aaacatagca ggtaaaatag caaaatactt agcaatatca tttgccatac taaaagttgt
     7981 aagactgcct ctagtaataa gcaaaccttt tcctatttca actacttcta aaattttagt
     8041 aggattagaa tcaagatcta tcatattggc tgcttctttg gctgcttgag ttcctgagtt
     8101 catagctata cctacatcag cttgtgcaag agctggagca tcattggttc catctcctgt
     8161 catggctact atcttacctt gggcttgttc ttttttaata gcttctattt tatcttcagg
     8221 cttgcattct gctataaatc catcaagccc tgcttctttg gctatagtag ctgctgttaa
     8281 aggattatct ccggtacaca ttaaagtttt tatgcccatt tttctaagct catcaaagcg
     8341 ctctttaagt cctggtttta ctgtgtttta ctgtatcctt tagataaatc actcttaaaa
     8401 ttttttcatt tttacacact accaaaggag taccaccaag atttgaaatt tccattacct
     8461 tcgtttctaa atcgctagga atttttccat tcatttcgct tatataagct cttatagcat
     8521 caaaagcacc tttgcgaatt tttatattat cttgcaaatc cacaccactc attctatttt
     8581 gagcgctaaa ttcgataaat tctttaatat cattaccttc taattcataa cccatttttt
     8641 gagccaatgc aactatgctt ttaccttctg gagtttcatc ttttaaagag gataaaacac
     8701 aagctttaat catttcttct ttacttatac cttgaacttc ataaaattca tttgccaaac
     8761 ggtttccaaa agtaatcgtt cctgttttat ctaaaatcat agtatcaaca tcaccacaac
     8821 tttcaacagc cttgcctgaa agtgcgatca cattaaaacg cgttaccctg tccatacctg
     8881 ctattcctat agctgataaa agccccccct atagttgtag gaataagaca tacaagcaat
     8941 gctactaacc atgaaatagg caaactcacg cctaaaaatt gcataaaagg atataaactt
     9001 acaaccacca ccaaaaaact caaactaagc acaattaaaa gagtattaag agcaatttca
     9061 tttggagttt tttgacgcgc agcaccttct acaagattga tcattttatc taaaaaactt
     9121 tccccagctc caactaaaat tttaatcttt aaaaaatcag ttaaaaccgt agtcccacct
     9181 gtaacagaag aaaaatcacc acccgcttca cgcataacag gtgcactttc acctgtaata
     9241 gctgattcat caacacttgc agcaccttct ataatttctc catcattagg tataagttca
     9301 cctgctttaa ctaaaactat atcacctatt tttaactcgc tagaattaag catttcttca
     9361 ctgccatcac tttttatgcg tctagcttta gaatcctttt tgctttgtct taaggtagct
     9421 gcttgggctt taccccttcc ttctgcaata ctttctgcaa aatttgcaaa aagcaagatt
     9481 ataaataaaa taaaagtgat taagatgtta taaattcttt catcagaatt tccattaaat
     9541 aaagtaggaa aaatacttaa aatcaaagta agaatcgatc caacttccac cataaacata
     9601 acaggatttt ttaccatcaa gcgtggatca aattttaaaa atgctccttt tatggcatta
     9661 tttaaaattt cttttgtaat gagtttattt tgttttttag acattgactc tccttaatgc
     9721 cataaagata aatattctgc aacgcttgat aaagtaagca ctggaaaaaa agtaagtgca
     9781 gcaaaaatat atataataca aacaagcaca aacataaaag ttaaattatc tgtttttaaa
     9841 gaatttgcag tattttcttg tgtattttta gccaaaagcg atccagctat agcaagctga
     9901 gctattaaaa ccaaataacg cccacaaaac atagcaaaag ctgtgcttaa attccaaaat
     9961 aaattatcat cttttaaacc ttcaagtcct gaaccattat ttgctgccga agaactaaat
    10021 tcatacaaaa tttgagccaa gtcatgaaag ctaggattgc ttatactatc ttttgcaaaa
    10081 acaacagcta atgcacttaa aacaaggatt aataaaggat ggataagaat taccaaagct
    10141 ataagcttca tttgtgcgct ttctattttt ttacccaaga attctggagt tctacctatc
    10201 attaatgcac aaataaacac ggttaagagc acataaataa tcatattcat aagccctact
    10261 ccttcgccac cgaaagctac atttagcatc atatttagca aagtagcact gatacttaat
    10321 ggatttaaac tatcgtgcat attattaacg cttcctgcag taaaagcagt agttacagca
    10381 ctaaataaac tcgaaccatc tgtgccaaat cttatttctt taccttccaa atttcccaaa
    10441 tttgcattta aacccaaaga atccaaattt ggatttgaca ttttttcgct aaaataaatt
    10501 aaaagcaaag aaatgataaa aataatcccc attgcaccaa aaataactcc cccttctttt
    10561 cccataagag caaaaccttg tctttctttt ctatgataaa ccatcaatcc aaaagctaca
    10621 acacaggcac taggaataag catcatggat aaaatttgca aaaaatttgt aagtaaagca
    10681 ggattttcaa aaggcatgct tgaattagca ccaaaaaaac cacccctatt tgtccctaaa
    10741 tgttttatag actcaagagc tgcaacagga cctgtggcaa tgctttgaaa tttattttct
    10801 aaagtaagca cgctaaaatt tgcgtgataa ttttacacca cgccttcaga gataaaatta
    10861 cagccaaaat aaaacttaaa ggcaacatca aacgcgtaat aatacgcgta aaatcttcat
    10921 aaaattccca tttgcatacc acataaagca cgacaaaaag ccatacaagc agaatatcca
    10981 cttgcacttg aaacaaacat agcaagtaaa atgcctgtat tttgggaaag caaacttaaa
    11041 gcactctctc cactataatg ctgaaggttt gtatttgtag taaaactaat tacagtgttt
    11101 aaattcaaat cccctttcat agaatttatc gaattgggat ttaaaaaaag tttatcttgc
    11161 aaataaaaaa tcacgaaaga aaaaatagcc actaaggcat taaaagcaat taaatgcaaa
    11221 gaataatttt tgccaagtca tattttttct atcaattgca caaattttat aaattaagtt
    11281 atcaattgga ttaaaaataa aatcaaaaat agttttttta cagcttgcaa ttttataaag
    11341 atagtttcca aaaattaaag ccaatataaa agctataatc agtgttatta aaatttctag
    11401 catatttttc ctttaaaatt tttcaggata taataagcat aaaataaata aagagcaagt
    11461 attaagctta aaactagtaa aaacatcatc cgcatgtcct agtttgaatt tcacaaaaat
    11521 ggataaaaaa tcataaacta ccaaaagcta aaagcaaaag caaagataac atccatagga
    11581 tagccctttc tcattgattc aaaataggat ttattctatc cttgttaagc ttatattttg
    11641 attaatacta attttatgat ttatttataa tttttattta cattaaacaa aaagataaat
    11701 ggagaattta gcaggaacaa tcctgctaaa attttttaaa gatagcccgc taccatagcg
    11761 ataaaataac ccgctataca agaagtaatt acacctataa gacctggtaa aataaaacta
    11821 tgattaataa caaatttacc aatatgagta gtacctgatc tgtcaaattg tatagtagct
    11881 aaatcgcttg gataagttgg taaaatataa tacccataac aagcagctgc aaaagcaaca
    11941 atcacaccgg gttcaacacc aattcctaaa gccaaaggaa caaaagccga aatagccgct
    12001 gcttgagagt ttacaaattt cgaaatcaaa agaagcatta cagcataagt ccaaggatgc
    12061 tcttttacta tatctccaag cactgctttc atcataggag tatgaactgc aaacatagta
    12121 tcagccatcc aagaaattcc aaaaaccgca acaagtgcta tcatgccaga tttaaaaatt
    12181 tcattagagc caattttctt tgcatctgtt ttagtaaaga taacaatcaa agaacctgct
    12241 aaaagcatga acatttgaat gactgagacc atagataaaa cgtccatttt aggattgcct
    12301 aaagcatcta cttgaggaat gccatttttt acaacttgac cccaatttgg acgtaaaaaa
    12361 tcaaatacgc ccagtaaagc cactaaaaca atagctccta agaaaatcca cattgcaacc
    12421 caattgctct ttggaagttt aacacctaaa agtgttttag aatccccata aacatatttt
    12481 ttaaattcag gatctttaag tttttcttga aatacctcat ctttatccaa atccttccct
    12541 ctaaaccaag aaaaaattcc tacacacaat acgccaaaca atgtactagg tatagtaatt
    12601 tgaagaagat tgatataacc atcaaaaccc gctaatttat gattagcatt taaaagcaaa
    12661 gcggtcaaac tcacaacagc cacagataca ggagatgcaa taatacccat ttgtgatgat
    12721 atagaagctg ctgccattgg acgctcggga cgaataccgt ttttaatcgc tatatcgtaa
    12781 ataataggca taatagtata aaccacatgt cctgttccac aaagtatagt caaaaagcag
    12841 gttacaaaag gcgctaatat cgttaaaaat ttaggattgc gtcttaaaat tctttctgct
    12901 atttgaagca taacatcaag accaccactt gcttgcaaag ttgcacttgc aaccactacc
    12961 gctaaaattg taagcataac atctatagct ggttttccag gttttatatg aaaagcaaat
    13021 acaagcatta aaatacctat accaccaagc aaaccaagcg ctataccacc tttttttgca
    13081 ccgtaaaaaa gacaaattaa aacgataatg atttggattg caaattgccc tccctcacta
    13141 aggcttgtta aaaagtccat tttaactcct ttgaaaatta atatttaaaa acagttatta
    13201 ttgtatc
//
LOCUS       DAPIWU010000047        12995 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.047, whole genome shotgun sequence.
ACCESSION   DAPIWU010000047 DAPIWU010000000
VERSION     DAPIWU010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12995
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.047"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..319
                     /locus_tag="RJ285_001025"
     CDS             <1..319
                     /locus_tag="RJ285_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HDV7383811.1"
                     /translation="KLKTIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYHI
                     ETRAGCACAGPYGHDLLDLKDNQKLKTKPGWLRISLHYTHEKEDIDYFFNALNKTIVK
                     LSH"
     gene            complement(316..1140)
                     /gene="purU"
                     /locus_tag="RJ285_001026"
     CDS             complement(316..1140)
                     /gene="purU"
                     /locus_tag="RJ285_001026"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDV7383812.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLVFEDRIFIHNNKTIIF"
     gene            complement(1137..2255)
                     /locus_tag="RJ285_001027"
     CDS             complement(1137..2255)
                     /locus_tag="RJ285_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HDV7383813.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESIFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     QKEYLKYANQAFYLDDISDFELAKIAFEMPLKKWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(2224..2715)
                     /locus_tag="RJ285_001028"
     CDS             complement(2224..2715)
                     /locus_tag="RJ285_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HDV7383814.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(2712..2960)
                     /locus_tag="RJ285_001029"
     CDS             complement(2712..2960)
                     /locus_tag="RJ285_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDV7383815.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(3039..3212)
                     /gene="tatA2"
                     /locus_tag="RJ285_001030"
     CDS             complement(3039..3212)
                     /gene="tatA2"
                     /locus_tag="RJ285_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HDV7383816.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(3222..3560)
                     /locus_tag="RJ285_001031"
     CDS             complement(3222..3560)
                     /locus_tag="RJ285_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDV7383817.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(3553..4467)
                     /locus_tag="RJ285_001032"
     CDS             complement(3553..4467)
                     /locus_tag="RJ285_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HDV7383818.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(4472..4996)
                     /locus_tag="RJ285_001033"
     CDS             complement(4472..4996)
                     /locus_tag="RJ285_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDV7383819.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVENSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(4993..5775)
                     /gene="napH"
                     /locus_tag="RJ285_001034"
     CDS             complement(4993..5775)
                     /gene="napH"
                     /locus_tag="RJ285_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDV7383820.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(5772..6512)
                     /gene="napG"
                     /locus_tag="RJ285_001035"
     CDS             complement(5772..6512)
                     /gene="napG"
                     /locus_tag="RJ285_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDV7383821.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLTLKADDNYTLRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFNVKKATNYLNDGEL"
     gene            complement(6530..9304)
                     /gene="napA"
                     /locus_tag="RJ285_001036"
     CDS             complement(6530..9304)
                     /gene="napA"
                     /locus_tag="RJ285_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HDV7383822.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(9551..10078)
                     /gene="tpx"
                     /locus_tag="RJ285_001037"
     CDS             complement(9551..10078)
                     /gene="tpx"
                     /locus_tag="RJ285_001037"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDV7383823.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(10177..10917)
                     /gene="peb2"
                     /locus_tag="RJ285_001038"
     CDS             complement(10177..10917)
                     /gene="peb2"
                     /locus_tag="RJ285_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HDV7383824.1"
                     /translation="MKKILILSLAAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTSAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKALEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            complement(10958..12988)
                     /locus_tag="RJ285_001039"
     CDS             complement(10958..12988)
                     /locus_tag="RJ285_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HDV7383825.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELARETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
BASE COUNT         4327 a         2506 c         1524 g         4638 t
ORIGIN      
        1 aaaactaaaa actataccta atttaatttt atacgcaaag aatttaaaaa cccgattgcc
       61 tatttttgct ttcaatatca aaggaatttc tccttttgat atcgcttacg aacttagtaa
      121 aaaataccac atagaaacac gcgctggatg tgcttgtgct gggccttatg gtcatgattt
      181 gctagactta aaagataatc aaaaacttaa aacaaaacca ggctggttaa gaataagctt
      241 gcattatacg catgaaaaag aagatattga ttattttttt aatgctttaa ataaaactat
      301 agtaaaatta tcgcattaaa atattatagt tttattatta tgtataaaaa ttctatcttc
      361 aaaaaccaaa tcaagtgctt ttgaaagaac atctttttct atatttctac ctgcttgttg
      421 catatcttgc caagtaaatt catggtttac aggcgaaaca gcttgagtga taataggacc
      481 ttcatcaaga ttattattta caaaatgtgc cgtagctcca attattttaa cccctctttc
      541 aaaggcttgt ttataaggat ttgctcctat aaatgcaggt aaaaaagaat ggtgaatatt
      601 tataatcttg ccttcaaaat gcctaacaaa atcaggagat aaaattcgca tatattttgc
      661 taaaaccaaa taatcaaatt tatattgttc aagacatttt aaaatctgat tttcttgctc
      721 tttacgatct aaattttcag cgctgataaa atgataagga atttcaaatt tctcaactaa
      781 atcctttaaa gagttgtgat ttgaaatcac agctttgata tttgcttcaa gttcgttact
      841 ataatgcttt attagcaaat ctcccaaaca atgactttct ttagtagcaa aaacaacgat
      901 atcttttttt ctcttctcgc aaagctctat caaggcttct tgtccaagca tagcctcaag
      961 cgttcctata aaagcttctt tatcaaactc accttctaaa agagcacgaa aaaaaaacat
     1021 tccttcgcct acaaattcat cgttttttac tatattgata tgatatttaa aaataacatc
     1081 agaaattcta tagattaaac ctttttgatc tttggtgcaa atttttaata cagaaatcat
     1141 ttagctaaac cttttatata ttcttttaat tcattctctc ttgcttcttg aagctttaag
     1201 ccaagaattt taccacaaaa tccagcattt atgaaatctt ttgctaaaat tttactttca
     1261 aacttattct cataaagccc taatctttta gcttgctcaa tacgcttttt actccaaagt
     1321 ccaagccatt tcttcaaagg catttcaaaa gcaatttttg ctagctcaaa atcacttata
     1381 tcatcaagat aaaaagcttg atttgcgtat tttaggtatt ctttttgaag tttggttctt
     1441 ttaaaaaata tatctttttc taaattaaaa aaattcaaat acaaatacaa gaataaagca
     1501 tcgcttttta caaattctct actttgtctg agcaaatttt gaaattccaa actcttaaaa
     1561 atactctcaa agccgaaaat ctgtttttct aagtcaagtt cttgcaaata tctatagcca
     1621 acatcaagtc tagggctttt aaagaattta taaagctccg cattgatcct atctttgcta
     1681 agatcagtta tatccatact ttgcatcaat ttcaagcttt cgctagttat cttaaagtta
     1741 aaccttgaag caaatactac cgctcttaat actcttaaac tatcctcttg aaagctttgt
     1801 ttatcaatat gccttaaaaa gcctgctcct agatctttta atcctccata aaaatctaaa
     1861 aactcatcgt taaaaagatt aatcatcata gaatttatgg taaaatcgcg tcttttggcg
     1921 ccaagttttt catcattaca aatttgaact tcaaaacctt tatgtccata gcttatttta
     1981 ttttcggttc tagcaagagc taaatcataa tttttaaact tatacacaaa aaaacttttt
     2041 ccaaagcctt gtgcgcccaa tttttgcata atcttttcaa aatctttagg ttttatatca
     2101 taaagctcta tatcatagtc acaaattttt aagcctaaaa acaaatccct aacgctacct
     2161 ccaaccaaat acgctcgttt ggtataaggc tttaaaaact cagcaataaa ctgtaaatcg
     2221 ggattatttt ttaagcttat cttcgatatt tgcaagtaaa aactctaaaa aatttatggt
     2281 caagtttaac ctattttcaa gatcatcttt ttttatgcta tttaaacctt caaaaagaac
     2341 taaaattctc tctctaagat gttttaaaaa aatatcctca ttaagcgttt gaacctctgt
     2401 cataacacta ggatttaaaa tttcactttg taaaaaaggc tcttcttttt taaactcttt
     2461 attttcctga gtagaaattt caatattatt ttgtattttt tgctcttctt caaattttgc
     2521 catagaaatt ttatcttcta agtcttgcgg agtatcaagc tcttcgcata caaactccat
     2581 aggtggtaat tcatctttta tttcagtttt tctatttaat tcttgttctt ttaaaatttc
     2641 attttgtctt ctttgctctt ccatgataga gctaacttcg ctaatggttt ttttagctaa
     2701 atcttccaaa ttcatatttt tatcaaccac cttttaaatt cattaatttc ttcatcgctt
     2761 ttcatattaa taaaaaaatc caacatttga gtgtttaagt ctttatgctt ggatctaaaa
     2821 ccactaagac gacgaaccgc atcgatagcg ttttgattat ccggatcttc ttttaagata
     2881 tttttataaa tttctaaagc ttcgtctttt aacccttgag cctcatagat agaagcttca
     2941 gtgactgtat ttttcatcac tgtttcctaa aatttttctt taattctagc aaaaagcttt
     3001 ttaatttatc tttaagaaaa taagatgttt tttaatgtct attttgtttt aaacagtttt
     3061 tctatatatt cttttttttc tttctctaaa ctagaattta attctttttg ttctttttta
     3121 acttgcgctt ttaaatcttg atttttaaaa tacacataat caattccaaa aataacacca
     3181 attataataa gcaatgggat taaaaatacc atctttacac tttaagaaaa ttgattaaat
     3241 acactaccat agtagcgaac attctcagca ttttcatttt tttctatcgt ttctattgca
     3301 ccactattga ttgctttttg gatatcatca tttaaatctt gataagaaaa aaccatatta
     3361 atactgataa tatttggcaa tttctcaagc attttataag agtttaactc atcttctaaa
     3421 ttttcacttt caatcacaac tataatcttt tcattttcac aaagttctac agaacaaaaa
     3481 ggaatttcag atatagcctt ttttaaatca tttatatatt cttcttttgc taaaatcaaa
     3541 acactagaaa gattattcat caatactcct aaacattata ctatcaccaa agcctgaaac
     3601 gataaaatct ttattgttta aaaaaataat aaactcactc atcaaatttt cattattaaa
     3661 agttttaaca ggcttaaaat cacttgtgct aaaaacttca ctaactccag cttcattatc
     3721 gctataaaca gcgaattctc cactaggact taaagcacaa gtatatatca aaaaatcttt
     3781 ttgcaaaaaa ttttgctctt cattttttac aactcctata cgcctatccg ttccacaact
     3841 taaaataaca ttatttttaa aatctacttg atagatatta tctttatgca ttttatcata
     3901 gttttttaac atcttccaat ttttcaaatc aaaaagttct acttcgccac tctcaaaacc
     3961 tgcaactagt ctactcttat cttcatttaa aactgcatca ttaagactag aatgggaaaa
     4021 attaaatttt tttatatttt ttaaactttt atcaatcaat tctatttcag aaccaataga
     4081 aatcaaaaga taagtgtttt cattgataaa aaatgctttt attatgctat tttcttcgag
     4141 ctttttgatt tgtaaatttt ccttataaaa acttaaattt ttagcaccaa aatcaccctc
     4201 gctaagtatt aaaagtgtat gtttaaaaac atcaatgtta taaatcttag caaaatcatc
     4261 accataataa tttttaatct ttggtaaaga taaaagttct tttaaacttt tatctttaat
     4321 gttatattgt aaaatttcac ctttatcagt gcctatatat aagttttgct tatcaagctt
     4381 taaagctgtt atattagcat ttaatttcag ctcataagca taagacaaaa cacaaaaaag
     4441 actcaaaata aaaagaaatt ttttcattta tttactttac accctcatta atcacatcaa
     4501 ttaaatttga acgacttttt aattgttcat ttttaaattc aggtttaaag ctattttcca
     4561 ctaaaggttt tgcatcactt tgtggaacat gacactgagt gcaattaaaa cgactatcgc
     4621 taatcatatc tcctgtggtt ttattgtgtc taaaatcata ataatgacta gcaggaagtg
     4681 gagttgcacc agcatctgct gctatagcct tatcatggca gcttaagcac atattgttat
     4741 ctttagttat aggtaacaaa tcttcaatag catgcggaat taacggtggt gcattttcat
     4801 aagaacgctc aaaacgagta gattccccag gctgtaaagt tgtgaaattt gcctccacta
     4861 aatttacttt attttcattt tctaaacttg cttttctaag tccaatttgt tctgaactta
     4921 ccccactatt cattgcacaa gcggcaaaaa ataccactgc agcacttcct aataaaacca
     4981 atttcttctt cattatttat tccttaaatc aaaaatatta aaattcaaag catcatcatt
     5041 acaaacttct atacatcttg cacaccttat acactctccc gatttcacgc tagtactttc
     5101 ttttccaacc atccacaaaa cctgtttttc aggacaaata cggatacatt cataacattt
     5161 agtgcattta tcactatcat gctttatttt aagcaaagca aaacgagaaa taaaagcata
     5221 aaaagctcct agtggacaaa aatgtgaaca aattgcccta ggacttaaaa aagtatcgat
     5281 acaaaaaagt ataaaggcta caaaaatcca agaacttgta gcaaaaataa tccctctatg
     5341 tatcattcct atataagaaa aactttcaaa cacaggcaat gaaaatacaa aagaaaggac
     5401 taaaaccaag accaatacaa aatagcgtaa atttttaggc aaaattaaaa atttattatt
     5461 aagggttaat ttatttcgca caaaagcagc aaaatctgtg attaaattaa caggacaaac
     5521 ccaagagcaa aaaacccttc ctaaaagcaa accatagata aaaaatataa tcaaagctcc
     5581 tattaaagcc attaaatcta tactccagct tgctagaatg atttgcaaaa ctgcaaaagg
     5641 atcgcttaaa ggtatggtat taaaaagtct agaagaactt aaatttccct gcaagataaa
     5701 atctgtagct ttaaaactaa aaagcgctaa aattccaagc tgaacgatgc gtctagcaat
     5761 taaatacttc atcacagttc tccatcattt aaataattgg ttgctttttt aacattaaaa
     5821 tgttttgaag tatctgcatt ttttatacga ccttcatctt tttcatccca gccttttaca
     5881 taatgagatc ctgcttttcc caatacatac tcccttggca aaacacgaat ggccggtttt
     5941 tcagtaatac aagccagttc acaaagccca caacctacac acacttcatg atccacacta
     6001 ggtagtaaaa aagcatgttt ggcggtgcgt tcattgcgtt taagctcaag ttttaaagcc
     6061 ctatctatca aaggacaggc tctataacaa gcatcacatt gaattcccca gtgtgccaca
     6121 caagaagcac tatcaacaat agcaataccc attttcaaag attctatacc ctgctctaaa
     6181 tgctttttat ctaaagcatc agttggacat tctctaatgc aaggaatatc cttacaaaga
     6241 tagcaaggaa tttctcttgc cttaaaaaaa ggcgtgccat tttttggact atctaacaag
     6301 ctagcaagct ttaaagtatc ataaggacag gcttttacac aaagcccaca acgaatacat
     6361 ttgcttaaaa atctagcttc atcttcagcc ccaggaggac gcaaggtata attatcatcg
     6421 gcttttaaag tcaaattagc caaaaatcca cctcctgtac ataaacatgc agccttaaaa
     6481 gcactaacaa aaaattctct tctacctttc atttaatcaa aaccctaaat taagccttat
     6541 aaatttttac agcgcatttt ttaaagtcag tttgttttga aagtggacaa gtcgcatcca
     6601 aagtaacttt attgatatat acattctcat caaaccacgg cacatacaca agtcctacag
     6661 gcggtttgtt tcttccacgc atatctactc ttgcttttac tttaccacga cgagattcca
     6721 cccaaaccaa atcaccttga tttaagccta atttctctcc atctttctca ctcatatagc
     6781 aaagtgcttc aggcacagca cggtaaagct caggcacacg catagtcata gttccactat
     6841 gccaatgctc taaaaccctt cctgttgcaa gccagaacgg atactcttta cttggtcttt
     6901 caggtgcttt cataaatggc ctaaagaaaa ttttagcctt atttttaata ctgtgctctt
     6961 tttcatcttt aggagctatt aaatccccat ttgtaagcat tttgttaaaa tcaccataaa
     7021 aagcaaaatc tgaatttgga gccgcttttt tagcataata atcaaattta gtattaaatc
     7081 tccactgtgt ttccttgcca ttaaccacag gccatcttaa accccttact ttatgatagg
     7141 tatcaaaatc cgctaaatca tgtccgtgtc ctaagccaaa tttacgatat tcttcccaaa
     7201 gatatttttg aacgaaaaag ccatagcctg taaattcttt tccatcactg ccttgaattt
     7261 ttctctcatc acctttaaca tcggtattat caaagccttt tgcgatggca tcgtttggat
     7321 taaagctttt tgcttcttta ttggcaaata gtacatcaaa aagtgtatca tcttcgctat
     7381 aacccatagc ttttgcctct tctaaaacac ttggcaaggt aagcttatta tccacttttt
     7441 gctctttcca aacttcttta agcttaaagc gttttgcaaa ttctaaaatt tgccaagtat
     7501 cactcatggc agcacccaca ggtaagactt gttgtttcca atgttgagtt cttctttcag
     7561 cattaccata agcaccccat ttttcataaa tcatagcact tggtaaaata agatcagcta
     7621 cttttgctga aattccagga taacaatcac ttacaacaat aaaattatcc atttctcttg
     7681 ctgctgcaat ccagtgattt gcatttgcag tgttttgcca tggattattc acttgcaccc
     7741 atgcaaattt aatttttcca tcttctaaat ctctcatgat attaagataa ggagaacctg
     7801 gttttgggtt gatagtcttt gcaggaactt tccaaatttt ttcagaaatt tctctgtgtt
     7861 ttggattggc tacaaccata tctgcaggca aacgatgtga gaaagttcct acttccctag
     7921 ctgttccaca ggcacttggc tgtcctgtta aagaaaaggc tccactacct ggtttagctt
     7981 gctttcctag caaaaaatgt accatataag cttgttcatt tacccaagaa cctcttgtgt
     8041 gttgattaaa gcccatagtc caaaaactta cgactttgcg atttttctct atgtaaagat
     8101 tagctaattc ttgaagtttt ttcttaaaat cttccaaaga ctcattatca tcacctttgg
     8161 ctactcttgc agtgtattct aaagtataag gggctaaacc ttttttaaat tcgtcaaaag
     8221 aaatttccca gtttttatca gccacacctt gatgtttcat ttcaaattta tcacccgctt
     8281 taacgccaag ataagataaa gaagtagcct cttcatcgtc taaagtgatt acattttctt
     8341 tttcaaccgt atctttttca ctttctttaa attttggatg atttggatta tttctcatac
     8401 cataaccaat atcagcataa ccagttgcaa atacgcagtg atctttgata aatttcatat
     8461 ccatagcctc tggatgatta taaacaatct ctcttgctat gtagttccaa atagccaaat
     8521 ctgtatttgg tttaaaaata atttcaatat cagcaatatt tgaagtacgg ttagaaaaag
     8581 tgcttagatt aacaacttta accttatcaa gattgcttag ttttctatca cttactcttg
     8641 accaaaggat tgggtgcatt tcagccatat tagctcccca agtgataata gtatctgtaa
     8701 gctctatatc atcataacag cctgatggct catctacacc aaaagtttgc ataaaaccaa
     8761 ccactgcaga ggccatacaa tgtcttgcat ttggatcgat attatttgtt ctaaaacccg
     8821 cttttgcaag ctttaaagca gcataacctt cttggatagt gtattgccca ctaccaaaaa
     8881 tccctatacc tgtaacgccg agttcattgt aggctttttt aaattgtttt tccatttcat
     8941 caaaggctct ttgccaagaa acttgttgaa atttgccttt tttatcaaat tcgccttttt
     9001 cattcatgcg aagcaaaggc ataacaagac gatcttcacc atacatgatc ttagcattaa
     9061 aataaccttt gatacaatta agtccgcgat ttacgggtgc tgcaggatca ccttttgttg
     9121 ctacgatttt gccatctttt ctagctatca taattccaca gccagttcca caaaatctac
     9181 aaacagcttt atcccatttc caatcttctt cttgcgcgcc aagcatagag cttggaacac
     9241 taagccctgc aacactagca gcacttgcaa tagcggtatt tttaataaaa tcccttctat
     9301 tcatccttat tcctccaaaa taaaaaaatc atcttattat aaaaaatgaa gtataaaaat
     9361 ctcttgaaat tttaataaaa ataataattt taaagctcta ttttatagga gttttattgt
     9421 cctttttata ttattcttac acaaaataaa tattaaaaat aatcaactta acaattaaaa
     9481 tataatcaac ttaaaataat aaaaaaatga agatataaaa attaagccct aagaatgggc
     9541 ttaatcaaaa ttaatggcaa ccacaaccac cgcagcagct agaaccacca aaaaatgcat
     9601 caagttttgc aatatctggc atttctgtga tttcatttac aagttcttta tatgccactt
     9661 taccctcttt aatcacaaat acggcacgag ctaaaagccc ttctaaagca ccttcattta
     9721 tcaaaacacc atatttttca ccaaattctt ttgccacaaa atcacttgca acacttaaat
     9781 tttcaatacc ttctgtactg caaaatcttc ccatagcaaa aggtaagtcc atacttacta
     9841 caatcacttc agcaccattg taactggcta cttttttatt aaattctcta gcctctgtag
     9901 cacaaactgg tgtatctaag cttggaacac ttaaaatgat ttgagtttta cccgctgcac
     9961 cgatttcaat cacgcttaaa tctttagctt taagatttac cttaggagca tctgctccaa
    10021 cttctactga atttccttta agttttacag gatttccttt aaaatttact gtactcattt
    10081 aatttccttt tttgatattt taaacattat tgcaattaat gttttaggag tgattatatc
    10141 ctataaatat taattatttt ttaatttcac tcaaaattat tttacttctt tccaagtata
    10201 ttttttccac actttttgag cttccttact cttaataaaa tctacaaatt ctaaagcttt
    10261 tttattttct aaagcttttt ttgtaggagc aatttcagct gcacgataaa tcactgcatt
    10321 tttatctttg ataaataaag ctttatcatc gcctaaagcc tttgcccaat gagaccaaat
    10381 gattaaagca tcaatatttg gattgttatt ccactcatct acagcagctt tggaattttt
    10441 agcataaatt tttatatttt tacgtaattt taccaaattt tctctttttg cactttttaa
    10501 agccatatct tcataaagtc caacttgtcc tgcaccatca accaccataa catttatacc
    10561 atcttttaaa atgtcttcaa aatttttaat attttttgga ttatttggac gcacgataat
    10621 acctgatgga cgcacattta aaacgcttaa attttccaaa cttaaacttg gaattttttt
    10681 agcaaaatca tccatcattg aagtattgcc tgaaaaaatc aaatctgcat tttcttttgc
    10741 tttatctatc caagctgaag ttgggcctgc ggttacaatc accttttctt ttgttttttc
    10801 ttcaaatttt aaagcaagct cttttagcac aggagcagga ccacctggac cataaactaa
    10861 aatttcagca tttaaaaaac ttgctgctgc taaacttaaa attaatattt ttttcataaa
    10921 ataaaccttt ctttataata atataaagga aattttatca atctatagtt aactctccct
    10981 tgcaaagccc tgcttctata agaaaacgag aaggagcaaa agaagttttt ttgtttttat
    11041 catatttagc atagcttaaa taaagtatat tttttgccct agttactgca acataaaaaa
    11101 gccttctttc ttcttctaag cttccaccca ttcccataag cttttgatta ggaaagcgac
    11161 cttgcgcaag atcaatcaca aaaacaagat caaattccaa gcccttactt gcatgtacgc
    11221 taagcaaatt aactcctttg ccactactca tttcacttgc acctaaagtt agaaaattat
    11281 aatatttata aatatcgcta taattttttg taagctcttt taagacatta aattttgttt
    11341 ctattttttc taaattttca ctctttctta ataaatccac ctgccctgct ttatttgtcg
    11401 ctcttttggt tgcaagttct tcgcaaattt ctctataaaa agaattttcg caaattaaat
    11461 tgactaaagt caaagaatgt tttatttcca tagctttttt taaaaaaaga tagatttttt
    11521 ccaaatttct agcgcacaaa tcattgattt ttgaaagtct taaaatagga tgtgcatcaa
    11581 attcactctc aaatttaaaa cgagtttctc tagctaattc ttctaaatct gcaaaaagcc
    11641 caagttgata atttcttttt tgatgatttt gcaaatttac atttttatca ggatctaaaa
    11701 aaccttttat taaatttcca tgccctaatt ttaaaagtgc gtcaaaaatt tcttttgcta
    11761 aaactccacc cacacctttg gtatattgaa ccaaatgaat aaaagccatg atatctttag
    11821 gatttaccac aagcgcaagc atggagctaa aagctttaac ttccaaactt tcaaaaaaac
    11881 ttccacttcc ctttctcaca cttgcaatgc cctgctccct taaagctact tcaaccccat
    11941 cagcacttga gttgttgcga aaaatcacgg caatttcttc caaacttact ccgcttgtaa
    12001 gtatcatttt ggctatattt tgatactgat caaataattc ttcaaaagta agcaaagatg
    12061 gggctttaaa ctcatcattt cttgtaacaa taagttcttt tggatataat ctttcgttat
    12121 ttaaaatcac tttattagcc aaagctaaaa tacttcttga tgaacggtag tttttattta
    12181 aagaaaaaat ttttgcatct ttaaaacgat ctttaaaccc acctatgata ttaatatccg
    12241 ctccattaaa agcataaata ctttgatcat aatcccctac gcaaaacaaa cttttactat
    12301 gaaaagcctc tattaaagaa ctttgcaaag tatttgtgtc ttgatattca tctactaaaa
    12361 tttcatcaaa ttcatatttt tcttctttta aaagatcttt tagattgata agcaagtcat
    12421 taaaatccac ataattaaaa cgcttttttt cattatcata ttcttttaaa atatcttcat
    12481 aaatttcagc ataaatactt tgatcttcat agttttgaca aaaccaagta taaaaatctt
    12541 gattgtgtgc tttgttttga aacaaagaat aaagatcgta taaataactt gattgataag
    12601 gttttatatc acttaaatgc ctaaaagttc ttttttcata gacactttta agtagagttt
    12661 ttaactcgct tgcttgcttt aaggctatat ttttatccgc atttctaagt aaggtataag
    12721 ccgtactatg aaaagttcct gcaagtattt tactggtaat atttttatca aaaaatttcc
    12781 ctaaacgccc tatcatttct ttgctggctt tatttgtgaa agtcaaaagc atgatttttt
    12841 gaggtgccac tcccttgctt aaaagataag aaattcttgc aacaatagta gaagtttttc
    12901 ccgtgcctgc acttgcaata acaagattgt gtccaaaatc agcagtagcg gcaagatatt
    12961 gttcattatt taattttgaa agtggcatta ttttc
//
LOCUS       DAPIWU010000048        12798 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.048, whole genome shotgun sequence.
ACCESSION   DAPIWU010000048 DAPIWU010000000
VERSION     DAPIWU010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12798
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.048"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            83..679
                     /locus_tag="RJ285_001040"
     CDS             83..679
                     /locus_tag="RJ285_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HDV7383826.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            798..1886
                     /gene="flhB"
                     /locus_tag="RJ285_001041"
     CDS             798..1886
                     /gene="flhB"
                     /locus_tag="RJ285_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HDV7383827.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(1892..2635)
                     /gene="motB"
                     /locus_tag="RJ285_001042"
     CDS             complement(1892..2635)
                     /gene="motB"
                     /locus_tag="RJ285_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HDV7383828.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAS"
     gene            complement(2638..3414)
                     /gene="motA"
                     /locus_tag="RJ285_001043"
     CDS             complement(2638..3414)
                     /gene="motA"
                     /locus_tag="RJ285_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HDV7383829.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLVEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            complement(3430..6069)
                     /gene="polA"
                     /locus_tag="RJ285_001044"
     CDS             complement(3430..6069)
                     /gene="polA"
                     /locus_tag="RJ285_001044"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDV7383830.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAK
                     SYIEKYFENFTSIKKYFEKVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            6233..7594
                     /locus_tag="RJ285_001045"
     CDS             6233..7594
                     /locus_tag="RJ285_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HDV7383831.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGHLGDKHGRKNVMMA
                     TIALMGISTTLIGFIPSYAVIGVWAPICLVALRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDKFGRCITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGTWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            7591..8598
                     /locus_tag="RJ285_001046"
     CDS             7591..8598
                     /locus_tag="RJ285_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HDV7383832.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYAYKTRGTKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNAKLLKLIKERFLKGVCYENYESIT
                     T"
     gene            complement(8554..8997)
                     /locus_tag="RJ285_001047"
     CDS             complement(8554..8997)
                     /locus_tag="RJ285_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7383833.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(9002..11827)
                     /gene="uvrA"
                     /locus_tag="RJ285_001048"
     CDS             complement(9002..11827)
                     /gene="uvrA"
                     /locus_tag="RJ285_001048"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDV7383834.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            complement(11900..12685)
                     /locus_tag="RJ285_001049"
     CDS             complement(11900..12685)
                     /locus_tag="RJ285_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDV7383835.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
BASE COUNT         4054 a         2005 c         2108 g         4631 t
ORIGIN      
        1 attattttag atatttaaaa aaaaataaag atttaaacga tataatttcg ttatcaataa
       61 aatttattat ttaggagaaa atatgatagt tactaaaaaa gctttagatt ttactgctcc
      121 agcagtattg ggaaacaatg aaattgttca agattttaat ctttataaaa acataggtcc
      181 aaaaggagcg gtagtattct tttatccaaa agattttact tttgtttgtc cttcagaaat
      241 tatagctttt gacaaaagat atcaagaatt taaaaatcgt ggcattgaag taattggaat
      301 ttcaggagat aatgaatttt cacattttgc ttggaaaaat actccagtaa atcaaggtgg
      361 tattggtcag gttaaatttc cgcttgttgc tgacttaact aagcagattg ctagaaattt
      421 tgatgtactt tatgcagaag cagttgccct tcgtggttcg ttcttgcttg atgctgatgg
      481 aacagttcgc catgctgtgg ttaatgattt accactaggt agaaatatag atgaaatgtt
      541 aagaatggtt gatactatgc tttttacaaa tgagcatggt gaagtttgtc ctgcaggatg
      601 gaataagggc gatgaaggta tgaaagctaa ccctaaaggc gtggctgaat atcttggcaa
      661 aaacgaagct aaactttaat ttcttagtat aaagcctctt tacgaggctt tttcttcatt
      721 tttattcttt aattgaaatt cataaatttt ctactataat tttacacaca tattaaaatt
      781 tttatttagg ctaaaatatg gcaggcgaag atcaagaaaa aacagaagaa cccacgtcca
      841 aaaagataga agatgcgcgt aaagaaggta atgttccaaa gtctcaagat gcggcagcta
      901 ttgtaacttt gataattgga gtaactataa ctttatttat gatgagtttt atgggcgaga
      961 gaattgtaaa tttatataga tactatcaaa gttttattgg tgttgaattt gatttgcgta
     1021 ttattcaagc cattatgatt aaaagcattt ttgaggtttt aattattctt gcacctattg
     1081 ttttaagtat tatgattgct ggggttttgg gaaatattat gcaatttggt tttattttta
     1141 caactaaacc tattatgcca aatttaggaa aaatcaatcc tctaaaaggt ttaaaaaacc
     1201 ttttttcatt gaaaaaaatt gttgaaagta taaaaattat tttaaaagtg ggtattgttt
     1261 ttactatagc ttttatagtt ttacttaaat ttatgcaaga gcttccaaga gttgagcttt
     1321 atactatggt tgcacagctt acttggctaa gagacagagc tattgtttta gcagctattg
     1381 ttatagttgc ttttttaatt attgctgttt tagatgtttt tttggtgcgt tttcagtatt
     1441 ttaaaggttt gcgtatgagc aaacaagaaa taaaagatga gtataaacaa atggaaggag
     1501 atcctcaggt taaaggtaga attcgtagac ttcaaatgga agctgcgcgt cgtcgtatgg
     1561 ttcaagatgt tgcaggtgcg gatgtggtga tcacaaaccc aacgcattat gccgtagcta
     1621 ttcgttatga tacaagtaaa gaacaagccc ctagggttgt tgccaaagga gtggattttc
     1681 tcgctcttcg cataaaacaa gtagcctatg aaaataatgt tgtagtttat gaaaatcctc
     1741 ctttagcaag agagctttat aaagcttgtg atgttaatga tcttattcct agggaaatgt
     1801 ttaaagctgt agctgaggtg ctaggatttg tttataatac aaataataag agtcgtttag
     1861 ctggtcaagt aaaaaaagga aactaaaact tttaagatgc tttagttcct attttattga
     1921 taagttcaag aactgatttt tgagtgcttg tatctgctgt atcgacttta aaatatattt
     1981 ctactctatt attttctaga gcttgtggat ttccattgat aggattatta agcccgtagc
     2041 ttttaatgct aatatttttc aaatttgctc caccttctat aaaatatttt aatacatttt
     2101 ccgctctttg gtaggcgagt tcataacttc ttataataga gtcgctattg tctgtatagc
     2161 ctctaatttc tatttttgct tgaggtggca aatatgttgt tagctcagcc atacgtttta
     2221 aataatcttg tatatcagct gaaacgattt gagcactacc tctttcaaat tcaactttag
     2281 atggaaggtt aagagcaacc tgattatcgc tttgatctag agctgcttga agacgtttga
     2341 tagtttcttg ctgtgtcata gtcatttgtt ttaacgattt gagttcatcg ctttcttctt
     2401 ttgctgcgcc tttatatttt tcttgggttt tactctcttc tttgactgtt tgagtagagg
     2461 tgtaatcaaa gattttaaca aattcagttt ttaaagcctc tactttagca ggatttgttt
     2521 tagaaattgc ccaaagagca ataaaaagtg ccaaaagcaa acttagaaag tccgcataag
     2581 gtacagccca tttttcgcct gctggacatt ctgggcattt atgtttttta gccattttta
     2641 acctttgtca aattgtgaaa ttcttggatc atcgtgactt aagaagttaa aaagtttagc
     2701 ttctaaatct ctaggattag caccttctgc aattcctttt atagcttcag taatgacaat
     2761 ttgctctttt acaagatcca ttccattagc ttttaatttt ttcccccaag gagcaaaaag
     2821 tgcataagcg ccaaaaattc ccgtaactgt agccgtgaaa gcacctgaaa tacctgctgc
     2881 cattgcttga ggattgtcta gtaatttaag agctaaaata agtccaaaaa ccgctccaac
     2941 aagccccatg gtaggacaag tctctccaaa tactatccaa tattctgcac attctttata
     3001 atgctcttca agttgttcag tttgtatttc catgctttca tgaatttctt caaagctttt
     3061 accatctaca agcatcatca tagcattttt taaaaattca ttttcaatct cactggttct
     3121 tgattctaac gctaaaagac catctcgtct tgcaataata gcaaattcga ctagctgggc
     3181 tatcctttcg ggtaaattta ctccagaacc tttaaaaaca actttgagtt ctttgtaggc
     3241 tgcttttaca atttttttat gcgtagaagt cattgcgcaa aatgcagctg ttggcataac
     3301 tatgagaaag gaagaaagat gcacaacatg caaaggattg cctccctcta gtatatctcc
     3361 taccgaaata ctagtaactg caagcaccat tcctaatatg gttgaaagat ccattaatta
     3421 tctccttgat tattttaaat cgccccaatt tttggcgata cttgaacttg tttttaattt
     3481 tacttttaat tttactatat tttccataat atctctagtt ttttttacaa aattttcaca
     3541 caaatcgtct tttacttcaa aaattaattc atcatgaatt tgtaaaataa gctttttgtc
     3601 ttcatttaat tctttattga tttctagcat tgcaagtttg attacatcag ccgctgagcc
     3661 ttgtaagatt gaattaatgc tttctctttc atacatggca atttgcatag gttttgcgtt
     3721 ttcaaaatca aaataacgct tgcgaccgct taaagtagtg ataaaaccat tttgtttagc
     3781 ttcgttttta actttttcaa aatatttctt aatgctagta aaattttcaa aatatttttc
     3841 tatgtaagat ttggctaaat gagcttctat ttttaaattt tgacttaagg ttttataacc
     3901 cataccataa ataagtccaa aatttatact ttttgcaaca cttctggttt cataattgct
     3961 ttcaccaaaa atcattattg ctgttcttgc gtgtatatct tcatcattgg caaaagcatt
     4021 taaaagtttt tcatcttcgc taaaatgtgc aagtattcta agttcgattt gagaataatc
     4081 aagagagata aaactaaatc catctttagc tacaaagcaa gatttataat cttttgcata
     4141 ttgtccgtgt gcagggatgt tttgcaaatt tggatcctta gatgaaagac gtcctgtagc
     4201 ggttccagtt tgtaaaaaac ttgaataaat gcgtgaattt ttatctttta acgctagttt
     4261 taacaaaggt tcgcaataag ttgaataaag tttggcaagt tctctataat ctaaaatttt
     4321 agcaattaca ggatgtttat ctaaaagtat atttaaaact ttttcatcgg tagaatatcc
     4381 tgtttttcct ttttttccgc ttgggagttt gagtttttca aaaagtatat cacccatttg
     4441 tttaggtgaa tttagattaa atctatcctc gcaaagagta taaatttctt cacttaaatt
     4501 tttgatttca ttttcaaatt ttttcataag gatttcaagt gcatttgtat caagctttat
     4561 gccattttct tccatcatca taatgatttt aatgaaatca aattcgcagt ttttagcaag
     4621 ttctaataaa ggagtttcaa gattttttaa aaaataaaga taaaatctta aagtgatata
     4681 agcatcttct gcagcgtatt tacaagcttt ttcaagttct acacttgcaa aattttctcc
     4741 ttttttaaca aggctttcaa aatgcaaggt ttcgtaatta aaaagtctta aggctaaatc
     4801 atccatattt actcttaaag aaggattttt aagccatgcc aaaatcattg tatctgcgta
     4861 tttttgaggt aaatttaagt caaaattgtt ttgaatgatt ttaaaatcat atttgagatt
     4921 gtgccctata acaaaatgat taaagattac ttctatagct tttttggcac tttgcaatga
     4981 gatttgctca cctactccaa gataattatg agttaaaggc acgtaaaagg cttcattttc
     5041 attcatgcaa aaactaaaac caacaatttt tgcttcttta gtatcaagtc ctgtggtttc
     5101 ggtatcaaaa gcaataatac tttctttatc aagggtattt aaaatttcaa aaagtttgtt
     5161 ttcatcttgt actaaagtgg ctttaaaacc taaattttta tctttattat caggattttg
     5221 acgcagtttt ttaagcaaag tattaagttc gtaatgttct aaaatttcaa gtatttttaa
     5281 aagaggttct tcatcaggat aagtggcttt ttctatgaga ttttgtactt ctaaattgtc
     5341 atacaaagaa gctaattttt tgcttaaaaa tgcattttcc ttaccctcta aaagcaagtt
     5401 acgacttctt tcgttacgta ctagggttaa attttcataa attccctcta tgctaccaaa
     5461 ctcatcaagc aaggttttag ctccttttgc acctatacct ttaacgcctg gaatattatc
     5521 agaactatcc ccacaaagag ctaaaaaatc tctgatttga ttaggtttta ctccgtattt
     5581 ttctaaacac gctgcttcat catagtcgtt tttagaaata ggactgtaaa tgcttgtttt
     5641 gccatctttt atgagttgat aaagatcttt atcttgagtg ataatgcgta caaaaatatc
     5701 cctatcttca caagttttta caaaagaagc gatgatatca tcggcttcat aaccttcttg
     5761 agaaacgctt ataaaaccca ttttttctat catctttatg caaattggaa tttgttctag
     5821 aagttcaggc ggtggtggag tgcgattttg tttatagttt ggatcaattt cactacgaaa
     5881 agtttttcct ttggaatcta atgcaaaaac aatataatca cttttatatt cattttttaa
     5941 gctataaata aaatttgcaa aaccgctaat cattccacta gcttgtcctt gtgaattttt
     6001 aaaacctttt aatgcgtagt aaagtctgaa aaaaaatcca aaagtatcaa taatagttaa
     6061 agttttcata ataatttctt cttttgataa aatatatttt ttggttatat tatttcaaaa
     6121 ttttgcttaa aatgtctcga aatttaaaga tatttaagcg aaaatacttc aatttttagt
     6181 cataatatcg agtagagtaa aaattttata tgaataatgt aaggaaaatg taatgacaaa
     6241 tcagcaaatt gatggaattg cagataagaa ttttaacaca cctgaaggta gaaaagtttt
     6301 taaaaaggca gttttttctt gctggttggg aactgctatg gaatatgcag attttgcact
     6361 ttatggttta gcagctgcaa caattttttc agaagtattt tttcctgagc aaactccagt
     6421 aattgcactt ttgcttagtt ttgtaactta tggcataggt tttattgcaa gacctattgg
     6481 ggctttgttt tttggtcatt taggtgataa acacggaaga aaaaatgtta tgatggctac
     6541 aatagcttta atgggaattt caactactct gataggtttt atcccaagtt atgcagtgat
     6601 tggtgtttgg gcgcctattt gtttggttgc attacgtttt atgcagggtt ttggcgcagg
     6661 agctgaactt tcaggtggaa cagttatgct aggagaatat gctcctagca agagaagagg
     6721 gcttgtttct tctgtgattg ctttaggatc aaatagtgga actttgcttg cgtcttttgt
     6781 atggcttttg atggtacaaa tggatgaagc aagttttaaa gaatggggct ggagagttcc
     6841 ttttatggga agtattttaa tcgctctttt tgctgtatat attcgttttc atgtcaaaga
     6901 aacccctgtt tttgaaaagc aaaaaaatga aatgatgaaa ttgcgtctta ataacgaaaa
     6961 gcatatgaaa aaagatgaaa gaagtttttg gcaaagaagt cgtgcttttt ggactatggt
     7021 gggcttaaga ataggcgaaa atggaccttc ttatcttgcg caaggtttta ttgtaggtta
     7081 tgtgactaaa attttacttt tagacaaatc agtagctact acagcagtga tgatagcttc
     7141 attggtaggg tttttagtta ttcctttggc aggttattta agtgataaat ttggaagatg
     7201 tattacttat agaatgtttt gtttgctttt aatgatttat gcttttcctg cttttatgct
     7261 tttagatagt aaaaatgaaa ttattgtgat tttaactatt attgtaggta tgtctttagc
     7321 atctttaggg atttttggtg tgcaagcggc ttggggtgtg gagctttttg gggtaaaaaa
     7381 ccgttataca aaaatggctt ttgctaagga gctaggttct attctttcag gaggaacagc
     7441 gcctatggtg gcttctgctt tgcttgcata ttatggcact tggtggccta tcgcgacata
     7501 ttttgtatta actgcaggta taggttttgt gactacattt tttgcgccag aaactagagg
     7561 tagagattta aataaaatag aagatgcgat atgagactta tcttagacac ggacataggc
     7621 aatgctattg caggagcaaa tactgatgat ggtttagcac ttgctttgat tttgtcatct
     7681 aaagaaatca aacttgaaat gctaagcaca gtttgcggta atgttccaag ccttgttgcc
     7741 tatagtgtgg ctaaggattt atttaaacgt ttaaatttaa atatcccagt ttatttggga
     7801 gcgaatgaag ccctaaaaga accaagtaaa gcttggcgtc aaagacttga tgaaagtgtt
     7861 aaaaatttta aacttgaata tctttgggaa aatataaaaa gtcctgaaat tttagaaaat
     7921 ataaatcctg atgcgatttt taaaatgggt gagttggtga gtaaaaatcc taaagaaatt
     7981 tctatttgtg cgataggacc tttgacaaat atcgctatga ctatgaaaat ttttaaagat
     8041 tttgatataa atcttaaaga gctttttatt atgggcggca gttttgatat gccttattac
     8101 actaaagata caaattttgg ttttgatcct gaggcggcta gtatagtgct aaattcaaga
     8161 gctaaaatta cactcatacc ttataatgca accatgcaga ctttattaac acacgaggat
     8221 ttaaaagagt tgcaaggtaa gaatatttta tgtgatttta ttgttgaaac tttaggtgtt
     8281 tggattgatt atgcctataa aacacgtggt acaaagggaa cttggataca tgatgcttta
     8341 acgatagctt acgcattaga ttctagtatt gcagattttg atgagtgtta tgctgatgtt
     8401 atttgcgata gttctttggc aagaggtatg agttggcgtt gttttaaaga accaaaaatg
     8461 agtatggggg tggatttaag cactaaaaat tgtgttaaaa ttctaaaaaa tgtagacaat
     8521 gcaaagcttt taaaacttat aaaagagagg tttttaaaag gagtttgcta tgaaaattat
     8581 gaaagcataa cgacttaatt ttccaagtaa gataaaaaat atagttttta aaaaagaata
     8641 tttcgcaaaa ccaagtccca aggcaaaaag atctcctact aaaggtaaaa aagtaaaaaa
     8701 agcaaatata cttccaaatt tagcaaaatt agcattgaaa ttttctaatt tttttaagga
     8761 tttgctaaag tatttttcta aaattttttc ttttccaaaa tacgctaaag cataagtact
     8821 taaacttcct aaggtattac ccaaagtggc tacgataagt accaaattcg gattaaaatc
     8881 aagttttata aagcctaaaa caaaggcttc acttgctaag ggtaatagtg tgcttgaaag
     8941 aaaacacacc atgaaaagcc ccaaatagct aatatcatta tataaaaaat caaacataaa
     9001 attatgattt ttgtgtattt ttaagctcta agtctagata atatcctgtg taagaacggg
     9061 tttttttgtg ttctttagcg actttttcca cgcttcctgt gcttataact tttccacctt
     9121 taactccgcc ttcaggcccc atatcgatga tataatcagc atttttaatc acatctaaat
     9181 tatgttctat cacaaaaaca gaatttttaa gatcaactaa atgttgtaaa actaagatga
     9241 gtttattgac atcttcaaaa tgcagtcctg ttgtaggttc atcaagtata taaagcgttt
     9301 ttcctgtatc gctacggctt agttctttag caagtttgat tctttgtgct tcacctccac
     9361 ttaaggtggt ggcattttgt cctagagtta gataatctaa acccactttt actagagtat
     9421 ctaatttttg tttgatttta ggaacggctg taaaaaattc actcgcttct aaaacactca
     9481 tatttaaaat ttcactgata tttttgcctt tatatttgat ttctagcgtg gcatcattgt
     9541 agcgtttgcc ctcgcaagta tcacaaacta ccataacatc aggtaaaaaa tgcatttcta
     9601 ttttgatttc tccatctccg ctacatttct cacatcttcc acccttgaca ttaaaagaaa
     9661 agcgtccagc tttataacca cgcattttgg cttctttagt ggcggcaaaa agatttctga
     9721 tttcatccat agcacctgta taggtggcag gatttgaacg tggtgtgcgc ccaattgggc
     9781 tttgatcaag ataaatgact ttatcaagtt tttcaagtcc ttctatttgt actccgccaa
     9841 gttttttaac ttttttcgca cggtttaatt cctcttgtgc aaaaggaagt agggtttgaa
     9901 gtatcaaaga gctttttcca gaacctgaaa ctcctgttat agcgactaaa ttttgcaaag
     9961 gaaattttac gcttaaatct tggatattgt taatatttac atttttaagc tcaagccatt
    10021 ctttctgtgt tctgttttga agttgtgaaa tttgtttttt accattcata taaagtgcag
    10081 tttcgctttt gctttttaaa agttctttat aagttccact aaatacaacc tcacccccaa
    10141 attttcctgc ttttggacca atatctacaa taaaatctgc ttcttctatg gtcattttat
    10201 catgctctac gacaattagg gtattgccct tttgttgtaa atttcttaaa gttttaatca
    10261 gttttgcagt atctctttca tgaagtccta tgctaggctc atctaagaca tacatcactc
    10321 cgcttaaacc actgccaatt tgtgaagcta tgcggattct ttgtgcttca cccccactaa
    10381 tcgttcttgc atcgcgccct aaagaaagat aacctagccc cacatcatac aagaaaaaca
    10441 atctttcgtt gatttctttt aggataggtt tagaaataag tttttgttgc tcgcttaaat
    10501 aagaaaaatt tttctcatct gcaaaaaagg ccgtactatc ttctatgctc atatctaaaa
    10561 tttcacccaa gctttttttg gctactttca cggctaaact ttcgggtttt aaacgatgcc
    10621 caccgcagtc tttacaaatt ttttcactca tatattcggc taaatctttt tcatctttta
    10681 gcatttcata agccatttta accacgcctt caaaagtgcg ttttaggcga tttcttttcc
    10741 aaagaaattc tatagttttg gcattaccat acaatacaag acgtttttgt tcttcgttta
    10801 attgcataaa aggtattttg ataggaattt cattttgttc gcaaaaggcg attaggaatt
    10861 tataataata acttttatta aaaccataca tgattttaac agcaccgttt tcgagactta
    10921 aattttcatc gatgattttt ttcatatcta aagtataacg aattccaagt ccatcgcaag
    10981 cttcacatgc tccttttgga gaattaaaag aaaagcttaa aggttcaagt ggaacaaagg
    11041 aaattttaca atcaaaacaa gctgaatgct cgctaaaatg atagtgttta ttaaggttta
    11101 tttcctcatg atttaaaact tctatttcta tttctccaaa gctttcctgt aaaccttttt
    11161 ctatatcgct tgcaagacga gaaagtaaat cttcttgaat ttcaagtcta tctatgacaa
    11221 gtttaatggt gtgttttttg gttttggcta gttcaatttc ttcatcaagt cttaccaaaa
    11281 ctccatcaat ttgagctctt acatagcctt tgttgcgtaa attttcaagc aaatctgcat
    11341 aagttccttt tttttctcgt atgagtgggg cgtagatgat gatttttgca ccttttggaa
    11401 attttaaaat ttcactgact atatcactta cactcataga tgaaattttt tgtccacatt
    11461 gatgacaatg ttgaatgcca actcttgcgt ataaaagtct tagataatca taaatttcag
    11521 tgatggttcc tacagtagag cgtggatttt tagaagtagt tttttgatct atggcaatgg
    11581 ctggagttaa accttcgatt ttatcgacat caggtttgcc taccttatct aaaaattgtc
    11641 tggcgtaagc acttaaactt tctatataac ggcgttgtcc ttcagcataa agagttccaa
    11701 aagcaagggt tgattttcca cttccgctca gtcctgtaaa aacaatgagt ttgtttttgg
    11761 gaatttcaag gtggatattt tttaggttat tttctcttgc gccaatgatt tttatggtat
    11821 cgttcatagt ctttcctaaa cattaaataa atttaagatt ttagcataat aatattaaaa
    11881 gaacttggat aaatccaagt taaaaattta taaaatttag cttattaagc aaagagtggg
    11941 tggttccaag tattgacaag gcatatacgc aaagtaaaat ttttctatga gctgaaatat
    12001 gcattttttc tatgatttta attcctataa aaactccaac catagaagct atacctacta
    12061 gtattccttt atgaataact tcagagtcta taactccaga atttgaaaaa gatataatac
    12121 cagagactga agcaaaaata acaaaaaaca aggataagga aacaactttt ttactatcat
    12181 agcctaaaaa ataagctaaa atcggagcaa ttaaaagtcc gccaccaatt cccaaagaaa
    12241 tagcaaaaat accagtaaaa gctccagcaa taaataaaat gacattcttt acccaaacgc
    12301 ttctttgatt ttgcacaatg ttttctttaa ttccaaaagc atatttgata aaaaatatac
    12361 aacttaccgc caaaaatacg ctagtaagag ctacatcact taaagctttt aaaagcattc
    12421 cgctaaagct tgcccctatg agccctccaa aacctatcat aataccatct ttaagattta
    12481 gatttttttt cttataatta atataagagc caaaaactgc tgcaaaaatc atttgcaata
    12541 ctgaaattcc gatagcatgg tgagcacttg ctccaagtgc gaacatagaa ggaacgataa
    12601 tcatacctcc accaatgcca aaaagtccag aagcaatacc tgaaatgatt cctatgatta
    12661 gataaggtaa atctgtgatt tccatagctt ttcctaaaaa atattaaata tttcaaatac
    12721 ggaataattt tatcttatta agctaagtat tatcttagtt ttttataaca atagaatatt
    12781 ttttggtaac tttaagca
//
LOCUS       DAPIWU010000049        12395 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.049, whole genome shotgun sequence.
ACCESSION   DAPIWU010000049 DAPIWU010000000
VERSION     DAPIWU010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12395
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.049"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..173
                     /locus_tag="RJ285_001050"
     CDS             <1..173
                     /locus_tag="RJ285_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383836.1"
                     /translation="KDFKIASKNSLFCDFSYNQLSDLRKLKNFKYCLILENYDIFEQE
                     FENKENQTPSLF"
     gene            complement(165..617)
                     /locus_tag="RJ285_001051"
     CDS             complement(165..617)
                     /locus_tag="RJ285_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDV7383837.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMKIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIANNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            672..3218
                     /locus_tag="RJ285_001052"
     CDS             672..3218
                     /locus_tag="RJ285_001052"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDV7383838.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSAIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNIPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIENFKLEN"
     gene            3278..4516
                     /locus_tag="RJ285_001053"
     CDS             3278..4516
                     /locus_tag="RJ285_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDV7383839.1"
                     /translation="MKLLFASFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVTYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWKEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     NLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALENYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNTVDDLGFNALDFALAAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            4513..5262
                     /locus_tag="RJ285_001054"
     CDS             4513..5262
                     /locus_tag="RJ285_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HDV7383840.1"
                     /translation="MKTAFITGASSGFGRACVEAFMQEGYKVIALARRKERLEELKNA
                     HKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAVIPTLRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            5259..6992
                     /locus_tag="RJ285_001055"
     CDS             5259..6992
                     /locus_tag="RJ285_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDV7383841.1"
                     /translation="MNKFLVLLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSANIFKAQHLTFVNYYNTAVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFATRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGALNTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASANPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            6989..8062
                     /gene="trmA"
                     /locus_tag="RJ285_001056"
     CDS             6989..8062
                     /gene="trmA"
                     /locus_tag="RJ285_001056"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDV7383842.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPKLLEYLHQDNKLKEKL
                     FGVEFLTTKQELSVTLLYHKNIEDIKSNLENLSNNLHINLIARSKGKKLIFKTENLRQ
                     TLNIQDRKIFYEFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKVLATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRVE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(8049..8465)
                     /locus_tag="RJ285_001057"
     CDS             complement(8049..8465)
                     /locus_tag="RJ285_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HDV7383843.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGAFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            8584..8997
                     /locus_tag="RJ285_001058"
     CDS             8584..8997
                     /locus_tag="RJ285_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HDV7383844.1"
                     /translation="MNEKETISYIINTSKNIAIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLG
                     ISNETAKKECKKLDINFIQNRCIMLEYPYFKTKEK"
     gene            8997..10208
                     /locus_tag="RJ285_001059"
     CDS             8997..10208
                     /locus_tag="RJ285_001059"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HDV7383845.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLIL
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVATLLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(10205..10930)
                     /gene="truA"
                     /locus_tag="RJ285_001060"
     CDS             complement(10205..10930)
                     /gene="truA"
                     /locus_tag="RJ285_001060"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDV7383846.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(10927..11952)
                     /locus_tag="RJ285_001061"
     CDS             complement(10927..11952)
                     /locus_tag="RJ285_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDV7383847.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENLQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(11952..>12395)
                     /locus_tag="RJ285_001062"
     CDS             complement(11952..>12395)
                     /locus_tag="RJ285_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDV7383848.1"
                     /translation="IDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFL
                     LNAFSFGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLF
                     IASILTLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
BASE COUNT         4563 a         1897 c         1956 g         3979 t
ORIGIN      
        1 taaaagactt taaaattgct tctaaaaatt ctttattttg cgatttttcc tataatcagc
       61 tttcagattt aagaaaatta aaaaatttta aatattgttt aattcttgaa aattatgata
      121 tttttgaaca agaatttgaa aacaaagaaa atcaaacccc aagcttattt taaattcact
      181 ccttcatttt caagcaaaaa tctttttatt tcaagccctc cattatatcc tcctatgcca
      241 ttgtttgcaa taactctatg acaaggtata aaaataggaa tttgattttt agaatttgca
      301 tttccaacgg ctctaaaagc ttttggatga ttaatttttt ctgctatatc tttataagta
      361 gctattttgc cataaggaat tttcattaaa gccttataaa cctttgattc aaaatctgta
      421 ccttgtatca aaacaggaat gctaaatttt ctaagcttat gagtaaaata taaatcaagt
      481 tcatattttg ctaagtcaag caaactacaa tttttttctg atcttttatt atcacaaaaa
      541 tcgactctag ttaaaaattt tccatcacta tgtaaagata ggtaacataa aggcatttta
      601 taataaactt taaacatttt ttatccttca aagagctaca attataataa aaaatattta
      661 aggagtagaa aatgtctttt atgcaagaat acaataaact tgttgaagaa agagccgctt
      721 tgggtatacc accccttcct ttaaatgcaa atcaaactag agaactttgt aaattacttg
      781 aaaatgaaaa taatgaagag cttgcaaatc ttttagaaaa tagagtaaat cctggtgttg
      841 atgatgcagc tttagtaaaa tgtgaatttt tagattccat acttaaaggc aaaatcagtg
      901 ctccaaatat agacaaaaaa agagccttaa gaatgcttgg aactatgcta ggcggatata
      961 atgttaaagt tttaatcgat gccttaaaag atgaaaacat agccaaagat gctgcagaag
     1021 tgttgaaaaa tattattttt gtacatgata atttccatac catagctgaa cttagtaaaa
     1081 acaatccaca cgctaaggaa gttttacaaa gctgggcaaa tgcggactgg tttaataaaa
     1141 aagaaaaact accacaagtg attaaatgta tagtttttaa agtagcaggc gaaacaaata
     1201 ccgatgatct aagccctgca ggagatgctt ttacaagaag cgatattcct ttacatgcaa
     1261 atgccatgct aaaggtaaga caaacaggat ccttagaaaa aatcaaagag cttaaaaaaa
     1321 gcggtcgcga agtggtttat gtaggtgatg ttgtaggaac aggttcaagt agaaaatcgg
     1381 caataaattc catacaatgg cacttaggaa aagaaataga aggtgtgcca aacaagcaca
     1441 gcggtggtat agtaatgggt tcaaccatag caccgatttt ctttaacact gctcaagata
     1501 gcggggcttt acctatcatc tgtgatgtaa caaacttaga aatgggcgat gagtttgaaa
     1561 ttcatcctta tgatggaaaa atcataaaaa atggctctgc aatcgcagaa tttacactca
     1621 gtccaaacac tctcttagat gaagttagag caggaggaag aatcccactt atcataggtc
     1681 gtgggctttg tactaaggct agagaatttt taggaatgga aagcgaaaat atctttacca
     1741 aacctgaaca acctaaatct tcaagcggtg gttatacctt ggctcaaaaa atgctaggtc
     1801 gtgcctgtgg agttgaaggt gtgcgtccag gtatgtatat agaacctata actttaaccg
     1861 taggctctca agataccaca ggtcctatga ctagagatga aattaaagaa cttgcaagcc
     1921 taggttttaa tgcagacttt gttatgcaaa gcttttgcca tacagctgcg tatccaaaag
     1981 taagcgattc aaatttacat aaaaccttgc ccaatttcat gacaagtcgt ggtggggtaa
     2041 gtttaaaacc aggtgatgga gttatccact cttggcttaa tcgttttgta ttaccagata
     2101 ctgtaggaac aggcggagat tctcatacac gctttcctat aggaatttct ttccctgcag
     2161 gaagtggact tgtggctttt gctgcggtta ctggttctat gcctttaaat atccctgaaa
     2221 gtgttttagt gcgttttagc ggggaattac aagctggagt taccttaaga gatttggtta
     2281 atgctatacc ttattatgca atcaaacaag gacaacttac cgttgaaaag aaaaataaga
     2341 aaaatatttt tgcaggaaaa attttagaaa tagaaggctt gccaaactta aaagtcgaac
     2401 aagcttttga acttagtgat gcaagtgctg aaagatctgc agctgcttgc agtgtggatt
     2461 taagcataga aagtgtaagc gaatatatca aatccaatat ttctttaatt gaagctatga
     2521 tagaagcagg atatgagaat aaagctaccc ttgctagaag ggctgaaaaa atgagagaat
     2581 ggcttaaaaa ccctactctt ttaagagcag ataaagatgc aaaatacgct tatattatag
     2641 atattaatct taatgacatt aaagagccaa tcctagcttg tccaaatgac cctgatgatg
     2701 tggcaacctt aagcgaaatt ttagccgatg ataagcgtcc aaaaaatata gatgaagttt
     2761 ttgtaggttc ttgtatgaca aacataggac attatagagc tttgggagaa attttaaaag
     2821 ataaaggcat acttaaaacc agactttggg tagtgcctcc aacaaaaatg gataaagcac
     2881 aacttaccaa tgaaggttat tacagcatct ttggcgcagc aggtgctaga atagaagttc
     2941 ctggttgttc tttgtgtatg ggtaatcaag ctagagtaaa tgatggagct gtagttttct
     3001 caacttctac aagaaatttt gacaaccgta tgggaatggg tgctaaagta tatttaggca
     3061 gtgcagaact tgcggcagtt tgtgcgattt tgggtaaaat tccaagcaag gaagaatact
     3121 tacaaattgt tagcgaaaaa ctaagtgatg agcataaagc aaatatctat agatatttaa
     3181 attttaatga gattgaaaat ttcaaacttg aaaattaatt caaatttaat acttatttgg
     3241 attaaataac aaaattaaaa ttttcaaagg aaaaatattg aagttattat tcgcttcctt
     3301 ttgttgtttt gcaagtttaa tggctagtga tgccattaac tgcgacaaca ttaaaaataa
     3361 taaaacattg ctaaatgaaa gttcaaattt agattattta aatatagctt caagctgtaa
     3421 agaatcttta aaaaatcaag attttacaaa aaaactctat gcaatttcca atgaaattcg
     3481 cggaagcaat agctcttgta atggtgtgac ttatttgcca aaattacaac aatttgattt
     3541 tttattatta aaaatagcta tcgatcccat cgcttatcaa aaaactttag atacacccga
     3601 aaatttagaa aaaaaatatg atattttaaa atcttatttt agatattggg catatcaaag
     3661 tataggaaat tttagacttt acaaagcttt ttggaaagaa tacaataacg ctatagaacc
     3721 tttagaaaaa tattttgaaa gtaattttaa ttttgataaa ggtagtaata tttactatac
     3781 tagcaatgcc ttaaacgaat ttttaaattg ggctgttggt gaaacaaaaa tttacaaaga
     3841 cattagtcct ttagcaaaaa tcatgtcaaa taaaaattat tcagtatctt atatacaaga
     3901 ttttattttt tcaaataatc caagccaaga taatcttact atagccttgc aagcagcgct
     3961 tctaaatcaa agagaaaaag aaattttaga acttttgatt cgttttggtg ctaggattga
     4021 cgaaggttat gaaagtgcta ttttttacgc attggaaaat tatgaaaata caaacttttt
     4081 aatccaaaat ggagcaaatg ttaatcaagc caatgccttt ggtaaaaccc cgctttttta
     4141 tgccatagag tttaatcgtc ttgatatcat aaaactactt cttgataatg gagcaaatgt
     4201 taatcaaaaa tatattaata acaatgaaaa attagcatta agtgcgaaca taggttcaaa
     4261 tacgccttat tttattacat tttgtgctct agagcacact tcaaaaaatg ttttaatgca
     4321 tgctgcggcc tatggaaatg ttgaaatttt aaaacttctt atttcaaaag gagcaaattt
     4381 taatactgtt gatgatcttg gttttaatgc acttgacttt gcgctagcag caggtaaaaa
     4441 agaaaatgct gattatctaa aaagcttagg tttaaaagca aacgaaaatc tattttacgg
     4501 aggtagttta gaatgaaaac cgcatttatt acaggagcta gttcaggttt tggtagagct
     4561 tgcgttgaag cttttatgca agaaggctac aaagtaatcg cccttgctag acgcaaagag
     4621 cgtctagaag agttaaaaaa tgctcacaaa gataagattt acacgctttg catagatgta
     4681 agaaatcaaa aagaaatctt tgaggctatt gaaaatttac ccaaagaatt tcaagaaatt
     4741 gatgtgcttt ttaataatgc aggtttagct ttaggggtag atgaatttga taaattaaac
     4801 cttgaagata ttaacactat ggtagataca aacatcaaag gatttttata tgttgcaaaa
     4861 gctgttattc ctacacttcg caaacaaaaa aatgcttata tttttaactt aggttcggtt
     4921 gcaggaagaa atccttattt tggaggcaat gtatattgtg gaaccaaagc ctttgtagga
     4981 caattttcat tggccttaag aaatgatctt agaggaagca atatcaaagt aacaaacatt
     5041 gctccaggac tttgcaaaac tgaatttagt gaagtgcgtt ttaaaggaga tatccaaaaa
     5101 gctgatgcag tgtatgaaaa tacgcaattt atcagtgcta atgatattgc caaagtggta
     5161 atgtctatca ttaacctacc aagtcatatt aatgttaatg aaatcgagct tatgcctgtc
     5221 acacaaactt ggaatggatt ttatatagaa agagatgaat gaataaattt ttagttttat
     5281 tgtttttacc tttagttgca tttgcaaact cctcagaagc agctgcaaat gctaatttat
     5341 ttggagcttt tacacttata ccgcctttag ttgctattgc tttagccttt atcacaaaag
     5401 atgttatttt gtcactcttt gctggagttt taagtggaac ttttctgctc agtctttctg
     5461 caaatatttt taaagcacaa catttaactt ttgtaaatta ttacaatacc gcagtagaat
     5521 ctttttcaaa gattatttct tatatcttag gttcaacttc agatccagta aatgcaggaa
     5581 tcattttaca aattctttgc ataggtggtc ttgtggcact catcacaaaa atgggtggtg
     5641 caaaagctgt agcattaaaa tttgccacaa gagccaaatc agctgtatca gctcaagtta
     5701 acacttggtt tttagggctt ttaatatttt ttgatgatta tgctaattta ctgatcgtag
     5761 gtccaattat gcgtcctttg gcagataaat ttaaaatttc tcgtgaaaaa tttgccttta
     5821 ttatcgactc taccgcagct cctgtagcag gaatagctgt aatttctact tggataggct
     5881 tagaagtttc tttaattaaa accgcttatg aacacatagg cattagcgat attagtgctt
     5941 ttggaatttt tgtcgaaacc ataccttatc gtttttataa tatcttcatg cttttttttg
     6001 tagtcatgac tgcaatcatg ggacgtgagt ttggttctat gtacaaggct gaagtgcgtg
     6061 caagaaccac aggacaaatt gcacctctac ctaaatcagg cgcactaaat actgctgaat
     6121 tagaagatca gtttttagcg ccaaaagaag gtattaaaat tcgtgctttt gatgctattg
     6181 ttcctatttt tactttaatc attttagcta tattaggatt ttattttaat ggacttagca
     6241 ctttagaagg cgaagaactt gcaaaagcaa gtgctaatcc tttgtctttt gaaactttta
     6301 gggctgcttt tggaaatgct gattcttctg tggtattatt ccaagctgct ttgtttgctg
     6361 ctattgtagc gatttttatc ggagttcgtc gtaaaatttt caatcttaaa gaagcggtag
     6421 aaacttggat atatggctgg aaaaccatga tttttactat agtcttactt ttatttgctt
     6481 ggtcgctttc aagtatagta aaagatctag ggacttcttt atttatcact agtttgcttg
     6541 cagataaatt gcctgagttt attttgcctg ctactatttt tgcttttgct tcagctattt
     6601 cttttgccat aggaacaagc tatggaacta tggggatttt aatgcctttg gctgtgcctt
     6661 tagctcatga aatcgccaaa atcaatggta tggatgcaaa tgctatgcat cattatatgg
     6721 tcattaatat aagctgcgtt ttaacaggtg cgatttttgg aaaccattgc tcaccaattt
     6781 cagataatgt aatcctttca tccatgagtg caaaatgcga tcatatggag catgtaagaa
     6841 cacaaattcc ttatgcttta tttatctgtg gtatttcttt aatcgctgga tatattcctg
     6901 tatctttagg acttagcgtt tggtttgtct tgcctttaaa tttcatactt attgcgcttt
     6961 tactaagact catcggaaag aaagttccat gagtcttgaa aattttggaa attttctcac
     7021 tttagatgaa aaacactctt tcataaaaaa atattttaaa gaattttata caaaggattt
     7081 taaacttttt acttcaaaag ataagcatta tcgtacaaga gctgaacttt cattttacca
     7141 tgaaaacgat acgctttttt atgcaatgtt tgatccaaaa agcaaaaaaa aatacattat
     7201 agaatattta gattttgctg atgaaaaaat ttgtgctttt atgccaaaac ttctagaata
     7261 cttgcatcaa gataataaat taaaagaaaa actttttggc gtggagtttt taaccacaaa
     7321 gcaagaactt agcgtaacct tactctatca taaaaatata gaggatataa agtcaaattt
     7381 agaaaattta agcaataatc ttcatatcaa ccttatagca agaagtaaag gcaaaaaact
     7441 tatttttaaa acagaaaatc taagacaaac tttaaatatt caagatagaa aaatatttta
     7501 tgaatttaac aacgattgtt ttattcagcc taatactgct ataaatgaaa aaatgattac
     7561 ttgggtgtgt gaaattttaa atactcaaaa aagaatggat ttacttgagc tttactgtgg
     7621 atatggaaat tttactttag ctttagcacc attctttttt aaagttttgg ccactgaaat
     7681 ttcaaaaagc aatattaatt ttgctttaaa aaattgcgag cttaataata caacaaatat
     7741 ccactttgca agactttcaa gcgaagaatt aagtcttgct atcaaaaaag aaagagaatt
     7801 ttttcgttta aaagatattc gattggatga ttttaatttc tctcatgttt tagttgatcc
     7861 accccgtgca ggacttgata aaagcgtaat tgacttaata aaaaaatatg aaaatattat
     7921 ttatatttct tgcaatccta tcactttaaa agaaaattta aaagaattaa gcctaacaca
     7981 tagagtggaa gagtttgctc tgtttgatca atttgtcaat actccacatc ttgaatgcgg
     8041 agtatttctt agcaaggtat aaaaaaataa ttcattaatt tagcgagtat tactatcgcg
     8101 atacaaagca caaatacaaa agggtggata aaagcaccaa gtgggttttt cttctttaat
     8161 ataaaatgac aaaataaaga aaaaacaact aaagataaaa ttccaaaagc caaaataatt
     8221 tttacagcaa aaagtaaatt taaaggttta aaatgaaaac ctgccaaagc acctccgctt
     8281 aaaaaaagca aaagaaccac aaaaggcatt attttaactc cagtagcact aaaaagactt
     8341 ttgtcaaaat taggattttt ctttttaact acacccaaaa caaatacatc aacaaacaaa
     8401 taacctataa acaaaatagc acaaagaaga tggattgtta aagtatatgg ataaaattct
     8461 tccatttttc cctccttatt aaacttcgga atttgctata ttataacact tttttcattt
     8521 tttgaattca ctttagttaa ttttttaatc atttaagata aaataccaaa ataaaggtta
     8581 acaatgaacg aaaaagaaac tatctcttat attataaata caagtaaaaa tattgccata
     8641 tttgctttaa gtccagataa gacaaaagct tcttataggg tagcagaatt tttacaaaga
     8701 aaaaattata aaatttttcc tatttatcct aaagaagagt ttattttaaa tgaaaaagtt
     8761 tatagaaatt tagatcaaat agaagaaaaa atcgatacac ttatactttt tagaaaaggc
     8821 gaagtggcac tagaaattct tcctaagctt gttgaaaaaa atattaaaaa cctatggctt
     8881 caacttggta ttagcaatga aacagccaaa aaagaatgta aaaaattaga tataaatttt
     8941 atacaaaatc gttgcattat gctagaatat ccgtatttta aaacaaagga aaaatagtgt
     9001 tagagcttaa taaaatttac aaagcaaaac aacaaatttc aggatttgta aacaaaactc
     9061 ctttcatata ctcttctttt ttaagtgata tttgtcaaag tgagatttat cttaaaaatg
     9121 aaaatttaca aattacaggt gcttataaaa ttcgtggagc ttataataaa atagccaatc
     9181 ttagcgctga acaaaaacaa cacggagtca ttgcggcaag tgcaggaaac catgctcaag
     9241 gcgtggccat tagtgcaaaa aaatttggca ttaaagcagt tattgtaatg ccagaatcca
     9301 ctccgctctt aaaagtttct gctacaaaag ccttaggagc agaggtgata ctcaaagggg
     9361 acaattttga tgaagcttat gtctttgcaa cctcttatgc taaagaaaat aatcttagtt
     9421 ttatccatcc ttttgaagat gaatttgtaa tggcaggaca aggaactttg atacttgaaa
     9481 tgcttgatga aataagcgat cttgatatga ttatcgcacc tgttggaggt ggaggactta
     9541 taagtggtat cgcaagtgca gctaaacaaa tcaatccaaa cattaaaatc atcggagttg
     9601 gagccaaagg agctcctgca atgtatgaaa gttttcatgc caaaaaaatc aaaaatgcaa
     9661 aaagcgtacg cactatagcc gatggtattg ctgtgcgtga tgcaaatcct attaatttta
     9721 atattatttt agaatgcgta gatgatttta tccaagttga tgatgaagaa atcgctaatg
     9781 cggtattgtt tttacttgaa aaacataaaa tcatagttga aggcgcagga gctgcgagtg
     9841 tagccaccct acttcatcaa aaaataaata cacaaaatca taaaaaaatt ggcgtagttt
     9901 taagcggagg caatatcgat gcacaaatgc taaatatcat catagaaaaa ggtttattta
     9961 aatcttacag aaaaatgcaa attcatgtta ctttagtaga taaacctggg gcattattac
    10021 accttacaga cagcttaaaa atagccaatg caaatatagt aaaaatcgac tatgatagat
    10081 tttctaccaa gcttgattat ggcgatgcga tgatttcaat taccctagaa accaaaggta
    10141 aagaacacca agaagaaata agaaaaattt taacccaaaa ggcttttaat ttctatgaaa
    10201 gtttttaata acatatacgg cttaaataaa gcccatttgg cggtgctaaa aagtgattgt
    10261 attgcttttt agcctcaatc tgttctttga gttctttttc actcattttt ccttctaaaa
    10321 cttttaaaac gcttgctacg cttaatctaa tttgccctct taaaaaacca ttagctttaa
    10381 aatgaaaaat gctaaaatct ttataagcat aagctctagc aataaaaatt tctcttaaag
    10441 tcgttttatt atcccctcca cttttgcaaa aaaactttaa atcctttttt cctacaaaaa
    10501 aacccaaaag ttcattagct ttacctaggt caaatttagg ataaaaatgt acataagaag
    10561 ccataaaagg actataagaa gcgtgagaaa atatatagcg gtattctcta ctttttacat
    10621 caaatcttac ttcaaaatca tcttttactt tttcaatttt tttgatatgg ataaaaggat
    10681 gggaaaattt attaagttgt ttttgaagat attctaaatt tgtaaaataa tctccacact
    10741 ccacactagc tacagcatag cttgcatgta ctcctttatc tgtacgagaa gccatcaaaa
    10801 gaggtgaaaa aatacccaaa tgcgataagg ccccacttaa agcatcttga acaccttttt
    10861 tatgaggctg agtagcagaa cctaaaaaag cagagccatc ataagaaaat ataattttta
    10921 ttttcatcaa tatcgactca aaatcatttt cttaaagcaa taagccgaaa caaataaact
    10981 taaagaaaaa attccaagac aagccaaaat tggaggttga gaaaaagaac ttaaaagtcc
    11041 aaaatatata gcaatcactc caaacatacc taaatacaca tagccttttt cataacgata
    11101 agtaaccaaa ccaaaacaaa gcgcaaaaag cgtactagca agtggaaaca aggctatagt
    11161 tgtataaatc acaaattctc ttgctctttg tagattttcg tttaaatcat tccagtattc
    11221 ataaaatttc tttgtttgaa gattgtctgt attaaactga gtatttacta ctaaagtgtc
    11281 aaattctcca ctaaaaatac tttgaccttg ctcaaaatta tacattttgc cttgatttaa
    11341 gctaaaagca aagctatcat cttttctttg cacatgcgct tctttggcta tgataagttg
    11401 ttctttatca tctgctttat gtttagggcg atacataatt atgttttcat acttatcact
    11461 atcttgtttt tctataaaaa tcatccagtc taaaaatttt tgtccaaatt ctcctgtttt
    11521 gtagttaaat ttcacttgag tgcttttata gtttacaaag ttatcctgaa gttcaaatac
    11581 tataggtatc attaccaaag ctacaacaag cataaaagca ctaatcaagc ttgcaatttt
    11641 aaggaaaaat tttgccaaaa tcattggtga aaatcccaaa gtaaaaagca ctatgctttc
    11701 attttcctta gaaagcctaa acaaagccaa agttaaagaa ataaaaaaag atataggcaa
    11761 ggtaaaaatt aaaattctag gcaacataaa cccataaagc tttaaaagat ccaaaaaact
    11821 aatctctata cttgaagtaa gttttgcaag ttgaataaaa aacaccatag atacaatagc
    11881 aaaaagtacg aaaaatatag acaaattcgt acttaaaaat tgatttaaaa catatcttaa
    11941 actaagcttc attagaataa tcctaagttt ttataaaata aaactgccac aaaagcgata
    12001 tttaaaaagg gtatcatagc aagttcttgc tcttttattg ctttaattct aaaaaaaata
    12061 aaaaaaggca aagtcaaaat agaagctata aataatacta aaaatccata ctcaaaacct
    12121 aaaattccac ctatacaaga cataataata atatcagcat cacccaaatt ttctaaaatt
    12181 tcatcttttt tttggaaatt cattagaaaa aaaaccaaac tttttaataa aaaaacaaat
    12241 cctccaaaac taaaagcatt tagtaaaaaa cctccactaa actctttaaa aatcaaaaaa
    12301 tgtaaaattt cactttccct aaaggcgtaa aaaaaagcaa ataaaaaagc actccaaagt
    12361 aaaatttgtg gtacggcttt gagtttaata tcaat
//
LOCUS       DAPIWU010000050        12352 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.050, whole genome shotgun sequence.
ACCESSION   DAPIWU010000050 DAPIWU010000000
VERSION     DAPIWU010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12352
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.050"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            34..633
                     /locus_tag="RJ285_001063"
     CDS             34..633
                     /locus_tag="RJ285_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7383849.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLATKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKNIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEYPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            644..892
                     /locus_tag="RJ285_001064"
     CDS             644..892
                     /locus_tag="RJ285_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HDV7383850.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(981..1055)
                     /locus_tag="RJ285_001065"
     tRNA            complement(981..1055)
                     /locus_tag="RJ285_001065"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1021..1023),aa:Asn,seq:gtt)
     gene            complement(1148..2395)
                     /locus_tag="RJ285_001066"
     CDS             complement(1148..2395)
                     /locus_tag="RJ285_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7383851.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(2392..3066)
                     /locus_tag="RJ285_001067"
     CDS             complement(2392..3066)
                     /locus_tag="RJ285_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7383852.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(3142..4560)
                     /gene="htrA"
                     /locus_tag="RJ285_001068"
     CDS             complement(3142..4560)
                     /gene="htrA"
                     /locus_tag="RJ285_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HDV7383853.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEARLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            4760..5653
                     /locus_tag="RJ285_001069"
     CDS             4760..5653
                     /locus_tag="RJ285_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HDV7383854.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            5669..6043
                     /gene="hspR"
                     /locus_tag="RJ285_001070"
     CDS             5669..6043
                     /gene="hspR"
                     /locus_tag="RJ285_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HDV7383855.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNNFDLIFYEKK"
     gene            6049..7674
                     /locus_tag="RJ285_001071"
     CDS             6049..7674
                     /locus_tag="RJ285_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDV7383856.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTSLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            7684..8016
                     /locus_tag="RJ285_001072"
     CDS             7684..8016
                     /locus_tag="RJ285_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383857.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            8013..8633
                     /locus_tag="RJ285_001073"
     CDS             8013..8633
                     /locus_tag="RJ285_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7383858.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            8689..10683
                     /locus_tag="RJ285_001074"
     CDS             8689..10683
                     /locus_tag="RJ285_001074"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDV7383859.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWSNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSHNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            10680..11501
                     /locus_tag="RJ285_001075"
     CDS             10680..11501
                     /locus_tag="RJ285_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7383860.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNNG
                     KNIPTFTHPKNQEKVLAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGIVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKIGQKIKKGEFIGLSGATGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            11498..>12352
                     /locus_tag="RJ285_001076"
     CDS             11498..>12352
                     /locus_tag="RJ285_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDV7383861.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFKVSLKNFFCKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLALMDFGFE
                     DLLEYTKNK"
BASE COUNT         4560 a         1861 c         1803 g         4128 t
ORIGIN      
        1 tcatacaaat aaatttttcc ttaaggagtt aaaatgcttc caaaatggga taacagctat
       61 agtgtgcaca atgctaaaat tgatgagcag cataaaaagc tttttaaact tgctacaaaa
      121 gttgaagttg tatcagatag atctgtaagt aaaaatgaag tcaaagaact tttggctgaa
      181 ttttttaatt atatgaaaga tcactttaat gatgaagaaa aatacatgca gctaataggc
      241 tatccaaatt tagaagaaca tcgaaaaata cataaagaaa tcatccaaac catgattaat
      301 ttaatcaaaa atatcaaatc aaccaatgat cttaaagaaa aactttatat agtggctaaa
      361 aagtggcttt tagaacacat actatatgaa gacatgaaag ttgaaaaatg gagaagttct
      421 tctttgtcta cagatgatgg tggcgatgtt agctttgaag cagcagaaga tgaagataat
      481 gagtatccac aattttatct ttatacctgt aattgtcctg gtaaaattca cgatgttcct
      541 tatagcattc atcaaaaaat agaattacaa ggtcataaat ttacttgtaa aacttgtaaa
      601 caagctataa aattttacaa aaaatattct taaggaggat aaaatgaaac gcaatgtaaa
      661 aacttattct tttagaatgc ctttagagct taaggagcgt ttggataatt taagtaaaaa
      721 tctttctaaa ccaaaatcaa ccatagtaaa agaagctata gaggcttatc ttaatgaagt
      781 tgaagatttt tcttttgctg ttaatgccct agaagaactt aaagatgggg attatcaaaa
      841 ggcgagtaaa aaaatagata aaattgtcaa aaatcttaaa caaacaaaat aaaaacttta
      901 tcacaatttt ttgtgataaa gacttattat ttttttatat taaaatacat ttatgaatat
      961 taaaaatgga gttaaaaaag tggctccgga tgtaggattc gaacctacga ccaatcggtt
     1021 aacagccgac tactctaccg ctgagctaat ccggaatatt taaaagtaaa atgtgattat
     1081 agtgaaatta aaaaactttg tcaaggattt tttcacaaaa atgcattttt tatgtaaaaa
     1141 aattaattta ctccttaaca ataacacttt ttaaatttct aaaataaaac aaatttaccc
     1201 catcttcata taaataatca agcttcattc catgtgtttc taaaatagta tttacaatat
     1261 aaagccctaa tccaaaactt gatttttgtt ttgatccttg agtaaaagct tgagtatagt
     1321 attctaaagt attgttaagc tcaggaccac gatttttaaa acaaatataa tcatctataa
     1381 tatcaatttg cacaaaccca tcttcagaat gtttaatacc attatctatc atatttttaa
     1441 tcgccgtagt aaaaagttta aaatccacat ttacaaaaaa actttcttcc ataaaaatac
     1501 gtatattgct atcatctcgc attgcaattt ctttggcttc atctaaaaca tctaaaatat
     1561 tgtatttttt tctatttata aaagcagccc ctgaagtaat ttgctcaata gcagcaaatt
     1621 cattaattaa aatttcaagt ctagtaaaaa ccccatttaa gcgctcttta tatttattat
     1681 cttctatcat ttctaaagtt aagagccctt tagtaatagg agttttgagt tcatgcataa
     1741 tatttcttaa aaaaaactga cgagattggt ttaactttcg aatttgaaca atggcttgat
     1801 aaaaagcttc acttacttgt gaaatttcat ccaccccagt gcttacatct tctatatcac
     1861 caagctttcc ttgggcaaat ttatcaattt gttttttaag tcttttaagt ggttttaatt
     1921 ttttaaatat ataaatataa agcaatacaa gaatacaaat cacagctaca gctatagctt
     1981 tgataataaa atacctatag gtttgataat cttgatcctt ataaagataa acctttccat
     2041 cataaataat atttaaatac acctgtctat tataagaaat aatctcgatt aagccattgt
     2101 taacctcaac cctagctaaa acatcacctc taaaaagaat tttacggatc tgctttgctt
     2161 ctgttatctc atccatttta ttataatttt ttgtctgctc ttcaaattct ttttcactga
     2221 taactcctgc aaaatttaag agccttgcat tagctatcaa agaatatttt gtgtttaatt
     2281 ctctagtata attttgctga tcatattcta taagccacaa aaagccaagt ataacactaa
     2341 ccccagcaaa aataaaaata aaagttatag tataaaaaat cgaagattta ttcattgagt
     2401 aagcttataa cctattccac gtatagagtg aatatatttt ggagtttttg gatcatctcc
     2461 catcttttga cgaattctac tgataataac atctatactt ttattactag aatcctcact
     2521 aatagaagaa caattataaa caagctcttc acgacttacc actccaccct cttttttaat
     2581 caaatagctt aaaatatcaa attcagcatt agttaaagta agctcttgtc ctttcatggt
     2641 aataatatgc ttatattgat cataaacaag atcttttaca ctttttgcta tggcgctttt
     2701 tgtatttgaa atacgtctta aatgactttt aatgcgtgct tgtaattctt ttggattata
     2761 aggttttggt aggtaatcat ctgctccaag ctctaaagca ttaaccttat ctgtaatatc
     2821 atgtcttgcg cttgaaacaa taataggcgt atcatacttt ttacgaatct cttcacacac
     2881 ttcaagccca tcaagccctg gcaaagaaag gtctaaaatg ataagctgat attcttttaa
     2941 tgcaagctta gaaagaccta tataaggttc atgagctata tcaactttca tatcaaattt
     3001 ttccaaatat tcagctgtaa tttctgctaa ttctaaatca tcttctatca taagaatatt
     3061 tgtcatagtt ttcctttatt ttaaacttaa ttttaatttt aaactaaaat ttataacgaa
     3121 aggaaaatcc ttccgttatt tttatttaag cacaagcaaa gtcgcaaaac cattgcgata
     3181 tacccaaact ttggtaaatt cttttttatt aacttgtttt aaagcttgtt ctaaatcttt
     3241 taaattttta atttcacttt gtccaacacc tatgataata tcaccctctt ggaaaccaga
     3301 attttttcct ttgctctttt ctttaacact atcaaccaaa acaccattaa catcttttgg
     3361 aatttgcaaa cgatccttaa gtcttggatc taaatttctc aaactcaaac catcaatcaa
     3421 atcgctttgt acgcctttag gattttcttt ttcaccttta agaataaaac ttgcttgctt
     3481 attttctcca tctctttcgt aacttaatga aattttttga ccaatctcta aagttcctat
     3541 ataattttta agatcaatag gactttttat aaccttatca ttaactttag taactaaatc
     3601 tccacgctta agccttgctt catcagcact tgaacctttt tgaacatcag tgattaaagc
     3661 tccttcttga tttttgtaag cttttttagt atcaccttgc aaagctaaaa tagtcacacc
     3721 taaaaatcct ctatcaatct tgcctttttc aataagtttt ttagctatat ctttaaccat
     3781 atttgaaggt atggcaaaac ctatgccgtt atttccacca ccacgagaaa gaatagctga
     3841 attaatacct actaaatatc cgcgactatc caccaaagct ccacctgaat ttcctggatt
     3901 gatagaagca tctgtttgta taaaattttc atattgattt aaacctatat tgtctttatt
     3961 taaagcagat attatcccac ttgtaacact aaaaccaact ccaaaaggat ttccaagtgc
     4021 aaaaacaaca tctccttcca ttaaatcatc agaatttgta aaagtaatag ctgaaagatt
     4081 attagcctct atttttataa cagccaaatc tgtttttgga tctttaccta taagttttgc
     4141 tttatattct atgtcgcttc ctggtaaatt cactgtaatc gtatcagcat catctacaac
     4201 gtgattattt gttactatat aaccatcttt tgaaataatc acccctgatc ccaaagaact
     4261 caccacttct ttatcatttt ttccttttct ttgaggaaaa tcaaaatcaa aaaattgttt
     4321 aaaataagga tcattaaaaa aatcatccaa agggcttgga cgatttgctc ttgtaatagt
     4381 ttttgaggtg gaaatattaa ccactgattt ttttgcatct ttaatagaat catgataaga
     4441 aagcactgca tttccagcag caggattcac acgattagcc gttgcagtcg attcgttaaa
     4501 attaatactt gcagcaaata aagcacttgc taaacttaat gataaaaaaa tctttttcat
     4561 ttcatttcct tttgttctta aagataaatt atctcgtaaa atattttact gtcttcatag
     4621 tataaaaccg aaaatttaca aaattgtaaa taaaaccttg agtgataaaa atttataaaa
     4681 cttgattgac ttaggctaaa gtttatgtta taatttaatc ctctatataa tcaagtgaaa
     4741 atttttaagg aaatataaca tgaatagttt atacgaaact cttggagtta gcaaaaacgc
     4801 tagcgcagat gaaataaaaa aagcttaccg tcgcctagct agaaaatatc atcctgatat
     4861 caacaaagaa aaaggtgctg aagaaaaatt taaagaaatt aatgctgctt atgaaatttt
     4921 aagtgacgaa aaaaaacgag ctcagtatga ccaatacggc gattctatgt ttggtggaca
     4981 aagttttcat gatttttcaa gaaatactgg tggggtaaat ttggacgata ttttaaaaga
     5041 tctctttgga ggaggttttg gtggacgctc aagagggggt tttaacggct tttcttcaaa
     5101 aggctttagc agtggttttg gaggatttgg aggttttgaa gaagaaattt tagacagcaa
     5161 tctagagctt cacattcctt tcgaaaaagc tgttaaaggc ggggaacata gttttaattt
     5221 tcaaggcgaa accattaaat ttaaaattcc acatggtata aaagaaggcg agaaactaag
     5281 aattcgctct aaaggaaaac aaagcagaaa tggagctaga ggagatttaa tcattattgt
     5341 aaaaatagaa gaaagtccta tttacacaag agaagatgat gatttatatc aaaaggttga
     5401 tatttcttta aaaactgcac tttttggtgg aaaaataaat ataaaaacac tcaaagaagg
     5461 caaggaagaa gcaacaatta acataacgcc taattcaaaa aataaccaaa aaattcgttt
     5521 aaaaggctat ggtgtgcaaa atagaaaaag tgatatttat ggggatatgt atttgatttt
     5581 aaatgttgtt ttgccaaatt tagataccct tgatgaaaaa tttatagaac tcttaaaaga
     5641 aaaattacct taaagaaagg aataaaatat ggaacagcat tatgatgaac ctgtatattt
     5701 aatcagtgtt gtggctaaag ttttaagcat acatccacaa accttaaggc aatacgaaag
     5761 agaaggattg atagagccaa gtagaaccga tggcaaaata agactttatt ctcaaagaga
     5821 tattgaccgt attaaactta tattgcgttt aacaagagac atgggaatca atcttgctgg
     5881 agtagatgtt atcttaaaat tgaaaaacca acttcacgaa tttgaaaatt taattgatga
     5941 actacgctta gaattaagca aacaacaaga taaagaagcg gctagtaaag ccgttgttaa
     6001 gcataaaaat aactttgatt tgatttttta tgagaaaaaa taaaaataat ggataatttt
     6061 ttagaaattt ttttaatcac cgttgctata gctatagttt taaatgtcat atttaaaaaa
     6121 tttgaaattc caactatcat tggatatata gctgctggag aaatcatttc tgaaatttat
     6181 catttaagtg gcaaaggcga aatcactcat atagccgaat ttggtatagt gtttttaatg
     6241 tttaccatag ggcttgaatt ttcttttaag catttaatgg caatgaaaca agaagttttt
     6301 ttaaacggct ctttacagat gcttacttgt ggctttgttt ttatgctact tgctatagga
     6361 attttaggac ttggagataa aagcgctacc atagtaggct ttgcactagc gctttcttca
     6421 accgcagtgg tgcttaaaat tttaaatgat aatggcgata taaatgagca atatggcaga
     6481 aaagcattgg gaattttgct ttttcaagat atagccgtta ttcctttgct tttgcttgta
     6541 gatatttttt catccaacaa tcaaaacata gaaaaactcc tttttaccag tttaatttca
     6601 gcacttattt taatcacttt attatttttc ataggtaaat atctagtgga tagaattttt
     6661 agactcatta tccacacttc ttctcaggaa atttttatta gtactgtttt atttatggtt
     6721 attggagcaa gttttttagc aaattatttt ggattttctt attctttggg tgcttttata
     6781 gcaggtgctt tgatagcaga aacaaaatat aaacacaaaa tagaagcgga cttaatccca
     6841 tttagagatt tgcttttagg gctttttttc ataactgtag gcatgcaaat tcaacttgat
     6901 gtagtggcac aaaattggtt tttaatcata gttttaaccc ttcttgtaat ggctttaaaa
     6961 tttggcatag tttttggctt tttatttctt tacaccaaaa aaagagtagc gcttaaaaca
     7021 gcttttgcca tagctcaaat tggcgaattc gccctagcaa ttttttctct tttacaagca
     7081 aaaaatatgc ttgatatcaa aacttcacaa attttaattg ttgtttctat tttaaccatg
     7141 attatcacgc cttttatttt aaacaatata agaaaaatta ccaatgttgt agaagatata
     7201 gcacttaata ccaacgctgt gcaaaatatt gacagcaata tcaagctgaa aaatcatctt
     7261 gttgtttttg gctatggacg cttaggacaa gaagtcgtac aaaaaatcaa aaacacaggc
     7321 gtaccttatc ttgttttaga aagtgattta aatttagtag aacttggagt tagtcgaggt
     7381 gaaaatgtcg tttttgccaa tgctgctcaa gaagaaacct taaaaattgc caatatagaa
     7441 gaatgtgccg tagctattat cacagttaca aatgaagcta aacttgaaat tttatgtcaa
     7501 gtgctagcta attatccaaa acctatagac accatcattc atgtaaatgg aactttaaaa
     7561 aagatgcttt tttctagcat agatgaaaat atacgcatca ttcgctctga aaaagtaatc
     7621 gctagaaatt tagttcaaga agcgctagaa tgccgcattc acaaaaatac ctaaggaaga
     7681 attttgacaa aaaatgaaga aaaagcctta cgcgtaaaat acctaagaaa tcttgaaaaa
     7741 tttttcaatg gcgctatatc tgcacttaaa aaagaagatt ttgataaaac taaatttgaa
     7801 gaaagaatgt taaaaaatgc taaatttttt gaaaaaaatc ccgcggtaaa tcttaactca
     7861 acctatgcaa aaaatcttga attttttgtc aatgcttgtt tagatttttc caaagaaaaa
     7921 aacgagcttt taaatcttgc caatgcttta gataagcaaa aaaaacaagg tgagaaaaaa
     7981 gaaaaacata aaaattattt aaaggattat gaatgattaa tgtatttttt gatatggatg
     8041 gaactttaat cgatagtgca aatgccattt cttgtgcagt caatgaaata agacaggatt
     8101 taaacctagc cccactttca agagaaatca ttatgcaaac catcaatact cccaatattg
     8161 actgggcaaa agaactttac aatatagaaa atttccatca ttctagtttt aaagaaggct
     8221 atgaaaaata ttttgtcaag cactatgaac aaagcgtggt gctttttgaa ggagtaaaag
     8281 aacttttaga atttttaaaa agcaaaaatt gttttttagc tattgctact aacgccccgc
     8341 aaagctcact ttcaaacata cttaaaaaac acgatatcat tccttatttt gataaaattt
     8401 taggcgtaag tttaggcata gaacccaaac ctcatcctat gatgctagag cttttaaaaa
     8461 gcgaggctcc atataaaaca agcgttttta taggagatag tcaaaaagat aaagaatgtg
     8521 ctaaaaatgc taatttgcct tattttcatg ccaaatggta tcaaaaaaat ttaaaagaaa
     8581 atgaatttag caacgctagt gaacttaaag gctttttgca aaagtattta taagtttttt
     8641 aatgaaattt tagttaaaat tagaaataaa ttttaaaaag agtaaattat gagtgaatta
     8701 ttaatagaaa ttggtacaga agaattacct gctattcctt tgctaaaaga attagctaat
     8761 atagaaaaaa aatggagcaa tgttttagaa gaataccgct tggtaagtga ttttaaattt
     8821 tattatactc cgcgtcgttt agtttttttt catgaaaatt ttgcagacaa acaagaagat
     8881 agctttgctg aatttatagg agcacctaaa aatgttgctt ataaagatgg agttttaact
     8941 cctgcgggac aaagcttcct gcaaaaagca aggatcagtg aaaatgaact ctcttttaaa
     9001 gaaatcaaag gcaaggaagt tttgtaccat caaaaagcta ttaaaggttt gcaaagtcaa
     9061 gaaattttag gagaaatggt agaaaaattt ctaaaaagtc ttagttttgg caaaagtatg
     9121 cgctggggtg caaattcttt tgaattcatc cgtgcgatcc gttctatagc ttgcatttta
     9181 aatgatgaac ttgttaattt tcaaagctat ggagtaaaaa gtactaaaaa aactttcatt
     9241 cacagaagcg taagttatga tttgcaagat tttaacaatg caaaagaata ttttgaacta
     9301 ctagaaaaaa actatatcat ccttgatcca atcaaaagaa aggaaaaaat acttgagcaa
     9361 tttaaactca tagaaagtca aaaaaatata caaattggag aagatgaaga gcttttagct
     9421 gaagtagttg ctatcacaga atatcctaat gcacttttag gaagttttga agaagaattt
     9481 ttagaaattc ctagcgaagt aatcatcact tcaatgagag aaaatcaacg ttattttgca
     9541 gtttttaacg ataaaggctt aagtaatcat tttatagtag taagtaatgc agtatgtaag
     9601 gattattcaa aaatcataca tggaaatgaa agagttttgc gtgcaagact tagcgatgca
     9661 atgttttttt atcaaaatga tttacaaaat ggcttaaaac ctgaaaaact tgccaaaatg
     9721 acctatcttg aaggtttagg cacaatgcaa gataaaagtt taagagagat taaaattgct
     9781 gaaattttat gtcaaatgct ccataatgat aaaatcgaaa atatcagcac agcactaaaa
     9841 tacgccaaag cagacttagc cacacaaatg gtttatgaat ttactgattt gcaaggcatt
     9901 atgggaagtt attatgcgca aaaaatgggc ttagattatc aaatttgctt agccatcaaa
     9961 gaacaatatc ttcctaattc cgaacaagct ccacttccaa gtacagaatt ttcaagcata
    10021 gtagcccttg caaacaagct tgataccctt ataggacttt ttagcatagg aaaaattcca
    10081 agcggaacaa aggatcctta tgccttaaga agagctgcca atgggatcat taaaattgct
    10141 ttaaatttaa ataaagaatt tgatatccaa attttattag aaaaactttc aaatcattat
    10201 aaaagctttg atatgcaaat tttaaaagat tttatttttg aaagacttta tactttttat
    10261 acagtcaatg cttcttttgt aaaagcggtt ttaagctcac acaatacaga tcttatccat
    10321 atcaatcaaa gcgtaaatgc tcttataaaa cttagcaaaa aagataattt taatgaaaat
    10381 tttgcaacct ttaaaagact agccaatatc gccactaaaa atcctcataa agttgatgaa
    10441 agtctttttg ttcaagaagc agaaagtaaa ctttacaaag cttttcaaga aaaaactaaa
    10501 gccaactctt tacaagaaaa acttgaaaat ctttttgcac ttaagccttt tattgatgag
    10561 ttttttaatc aagtgatgat taatgctgaa gatgaaaaac ttaaaaataa tcgccaagct
    10621 ttggtttatg aaatttatgc ggagttttta aaaatcgccg atcttaaaga gttaagccta
    10681 tgaaagcctt atggcttttt ttaagcctta ctctttggct ttttggagct caaaatttag
    10741 aactcatcaa aggtcaagct ttatttttgg agctagataa gaaagatttt ttatctttaa
    10801 aaaataatgg taaaaatatt cccactttta cacatcctaa aaatcaagaa aaagttctag
    10861 ctattttttc cttaccttac aaaaatcccc cgcaaaatac aaaacttatc gcattttata
    10921 aagataaaaa agaagaaatt ttcataaaaa ctttagaagg taattataaa agtgaaaaat
    10981 tgcaagttga aaacaaaaag atttttccac caaaaaccat acaagaacgc atcactaaag
    11041 aattaaaaga agccaatgcg atttatagtt cttatactcc aaaagcttta tttaacggtg
    11101 cttttaatat acctttaaat tcttttatca caagtgattt tggcaaagca agaactttta
    11161 atgaaaaagt agcaagttat catagcggaa cggactttag agctgccaca ggaacaccta
    11221 tttatgcagc caactcaggc atagtaaaaa ttgcaaaaga tcgttatttc gcaggaaatt
    11281 cagtagtcat tgatcatggt tttggaattt attcacaata ttatcatctt tctaaaatcg
    11341 atgttaaaat aggacaaaag ataaaaaaag gtgaatttat aggacttagc ggggctacag
    11401 gtagggtaag tgggccgcat ttgcattttg gaattttagc tggaggcaaa caagttgatc
    11461 ctttggattt tgtatccaaa tttaatgcta tttttcaatg aaatttagtg actttttcca
    11521 tgcttggctc catgaaagct attataaaaa tgctgtaagt ataggaaaaa acggagattt
    11581 ttttactgct gtaagcgtag gaaatctttt tggcacactt ttagccaagc attttttaaa
    11641 tttaatagat aaaaaaattt tacaactccc tttagaactt gtagaaatag gcgctaatga
    11701 aggatattta agtcgtgatt ttttagccgc tttgcttgaa ttaagacctg aaattttttc
    11761 tcaaatttct tttttcgtca tagaaccgca tgaaaaatta agaactttac aaaaaaagac
    11821 tttagaagga gtggaattta ctcacaaaaa tagtcttaaa gaatgccatt ttaagaacgc
    11881 ttttttcttt tgcaatgaac tttttgatag ttttgcttgc gaacttatag atcatgataa
    11941 aatggcattt gtagaaaatt ttaaacttat ttttaaaaat atggatgaaa atttaatcac
    12001 aaaatgcaaa gctttaaatc ttaaaaaagg tgaactcagt ttagagcttg aaaatttttt
    12061 taaagattta aaccaaactt gtgagagatt tatatttgcg ggatttgact atggaacttt
    12121 aaatccacaa agttttagct taagaatcta tcaaaagcac gaagttttta gcccttttaa
    12181 agtatcttta aaaaattttt tctgcaaaag cgatctaact tataatgtca attttactca
    12241 tcttcaaaaa ctcatcaaag aatatgattt taaaccttta gcttttaaaa aacaaagtct
    12301 tgctttaatg gattttggtt ttgaagattt attagaatac acaaaaaata aa
//
LOCUS       DAPIWU010000051        12330 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.051, whole genome shotgun sequence.
ACCESSION   DAPIWU010000051 DAPIWU010000000
VERSION     DAPIWU010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12330
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.051"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            44..709
                     /gene="dccR"
                     /locus_tag="RJ285_001077"
     CDS             44..709
                     /gene="dccR"
                     /locus_tag="RJ285_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HDV7383862.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAREALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            702..1892
                     /gene="dccS"
                     /locus_tag="RJ285_001078"
     CDS             702..1892
                     /gene="dccS"
                     /locus_tag="RJ285_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HDV7383863.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     YQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(1935..3572)
                     /gene="groL"
                     /locus_tag="RJ285_001079"
     CDS             complement(1935..3572)
                     /gene="groL"
                     /locus_tag="RJ285_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDV7383864.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(3593..3853)
                     /gene="groES"
                     /locus_tag="RJ285_001080"
     CDS             complement(3593..3853)
                     /gene="groES"
                     /locus_tag="RJ285_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDV7383865.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            4015..6555
                     /locus_tag="RJ285_001081"
     CDS             4015..6555
                     /locus_tag="RJ285_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383866.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSNLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLEK
                     LTKTRLNGSLDVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIGLPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLTAKAHIIGTQVQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     TGMPNYASGIVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGNFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLD
                     FMDIYQGKADMKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLNLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
     gene            6564..7175
                     /locus_tag="RJ285_001082"
     CDS             6564..7175
                     /locus_tag="RJ285_001082"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDV7383867.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGVCLSVT
                     KLYEAGFEVELSRESRTHMAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFHISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            7139..7819
                     /locus_tag="RJ285_001083"
     CDS             7139..7819
                     /locus_tag="RJ285_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HDV7383868.1"
                     /translation="MGRSRKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTTKRF
                     VSVVYLKD"
     gene            7821..8024
                     /locus_tag="RJ285_001084"
     CDS             7821..8024
                     /locus_tag="RJ285_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383869.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNETLVKQLIDADFCEINEK
                     EKEELATLLHSLINAKDKALLSN"
     gene            complement(8021..9181)
                     /locus_tag="RJ285_001085"
     CDS             complement(8021..9181)
                     /locus_tag="RJ285_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDV7383870.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKTKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            9303..10028
                     /locus_tag="RJ285_001086"
     CDS             9303..10028
                     /locus_tag="RJ285_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HDV7383871.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSIFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPISVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            10031..11413
                     /locus_tag="RJ285_001087"
     CDS             10031..11413
                     /locus_tag="RJ285_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDV7383872.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLRLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            11417..12223
                     /locus_tag="RJ285_001088"
     CDS             11417..12223
                     /locus_tag="RJ285_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HDV7383873.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(12167..>12330)
                     /locus_tag="RJ285_001089"
     CDS             complement(12167..>12330)
                     /locus_tag="RJ285_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HDV7383874.1"
                     /translation="DEFFKFKIYGTNIHIPFWIFISYLIASLISVRFKYLAFLCIFAN
                     FIPFIMIVI"
BASE COUNT         4198 a         1667 c         2051 g         4414 t
ORIGIN      
        1 atgatatata tttaagagat ttgaagttag aaagatttaa attatggctg ctaaaatttt
       61 acttttagaa gatgatttga gcttgagtga gatcattgaa gagtttttaa acgatgaagg
      121 atatgaagta tttttatgcg ataatgcacg agaagcttta gatatggctt atgaaagata
      181 ttttgatctt tggattttag atgtaaaagt tcctttagga gatggatttt cattacttaa
      241 agaattaaga aaaagcggaa agcaaactcc agcaattttc atgacttctt taaacacaac
      301 aaacgattta aaacaaggct ttgacgcagg ttgtgatgat tatataaaaa aaccttttga
      361 acttgccgag ttatctatca gggttaaagc tttgcttaaa agagcttttt cacataaaaa
      421 tgaagatttt gaagatttag gagatggatt tagatttgaa tttactacac aaattcttta
      481 ccataataat aaagccttga ctttaccgag taaagaaatt aagcttttgt ctttattact
      541 taaaaataaa aacaactttt taagcacaga gagaattttt gaagaactct gggattatga
      601 tgaggagcct agtgagctaa gtttaagagc ttatgtaaaa aatttacgta aaattttagg
      661 aaaagaaaaa attataaatc aaagaggcag gggatattgc tatggctaaa aaagtcatta
      721 ggcaaatttt attaatctac ctaacaacta caggtatttt tttaactatt ttttttgcat
      781 tatggtatca aaaattatat gaagaattag ttgttttgaa gggtgccact ttgagagaaa
      841 atcatagaaa cattgttata agcatcttaa attctcgttt tacccctata gatataagtg
      901 caaaaaatat tgctcaaagc acagcactaa aatttgctat atttgatgct aaaaagattg
      961 tttttagtaa tatagatttt gatttaagaa aggcaaagat agagcttaaa ggtagaggta
     1021 tttgtgataa taaggttttt ttccttgctc ctatgagtgc agatcattat tttttaagac
     1081 atgctagcaa tgaagaagta aatactaacg atggtttgca aattttaata cagggtgaag
     1141 atgttggcaa agatcttttt tggattagaa cgaaagtttt tggttttgct attatggctt
     1201 tttgcatatt gggtttaata tcttatattt tagtaaaaat tgctctaaag cctttggagg
     1261 ataaaatcag cacactaaat cgttttatta aagattcaac tcatgaactc aataccccat
     1321 taagtgttat tttgatgagt atagaacaac ttgagtatca aaatttagga gataatgcta
     1381 aatttacaag gattaagctt gctgcaaaaa gtttgtctca agtgtattct gatcttgttt
     1441 tttataattt ccctaatacc ttagaaacag aaaaacaaaa atttgattta agaatactac
     1501 ttgaagaaag attggaatat tttaaagtat tttttgagca aaaaaaaatt acactaaagc
     1561 ttgatttaaa tcaagcaaat atttttgctc ctaaaagtca aatttctaaa ttgattgata
     1621 atcttataag caatgctatt aaatacaata aaaaaggtgg agtaatttct ataattttaa
     1681 aagccaattt tttaagtatt gcggatacag gttgtggaat ttcaaagtca aatttaaatc
     1741 atatttttga tagatataca agatttaata ccgatcaagg aggatttggt atagggcttt
     1801 ctttggtaaa aaaagtttgt gatgataatg atattaagat tatttgcgaa tctgtagaaa
     1861 atcaagggag tgtttttaaa ttaaattggt aatcagcaag gaaaatcctt gctgataaga
     1921 ggttagagca gatattacat cattccgccc atgccaccca ttcctcccat accgctcata
     1981 tctggcatag taggtttatc ttctttaatt tcactaattg ttgcttctgt ggttaaaagc
     2041 atactagcta cagaaactgc attgagtaaa gctactcttt ctactttaac aggatcgata
     2101 attccacttt caagcatatt aacatattca ccttttgcag catcaaatcc tgtgttttca
     2161 tctttagcat tttctacgct atttacaacc acacctgcat caaatcctgc attttcagca
     2221 atttgtctta aaggtgctct taaagctctt tcaacgatag ctgcgccaat tgcttcatca
     2281 ccctgtagat caagtttgat tttagctttt gctttgataa gcgctgcacc accaccaatt
     2341 actatacctt cttcaactgc tgctttagta gcgcttaaag catcgtcaac gcgatctttt
     2401 ttctctttca tttcagtttc agttgctgca cctactttaa taactgcaac accaccactt
     2461 aattttgcaa gtctttcttg taatttttct ctgtcataat ctgaagttgt ttcagcaatt
     2521 tgtgctttga tttgattgac tctcgcatca atatttgctt tttcgcctgc accatttact
     2581 atggttgtat tgtctttatc gatgattaca ctagaagctt gtccaagatc ttgtatagtc
     2641 gcactttcaa gagttcttcc aagttcttca gaaatcactt ctccacctgt taaaatcgct
     2701 atatcttcaa gcatagcttt tcttctatcg ccaaaacctg gagctttcac tgctgaaata
     2761 ttaagaacac cgcgaagttt atttacaacc aaagttgcaa gcgcttcacc ttcaatatct
     2821 tcagcgataa ttaaaagtgg tttgcctgtt ttttgaattt gttctaaaac cggtaataaa
     2881 tcttttaaat ttgtaatttt tttatcaaaa agcaggatat aagggcttga aagctctact
     2941 gtcatttttt ctgcattagt gataaaataa gggcttaaat aacctctgtc aaattgcata
     3001 ccttcaacta catttaattc atcattgatt gattttgcct cttcaacagt gataacacca
     3061 tctttgccca ctttttccat agcatcagcg attaaatttc cgattttttc atcagagttg
     3121 gctgagattg tagcaacttg tgcaatttct tttttatctt ttacttcgcg agaaagtttt
     3181 ttaagttctg ctactatagc ttcgcaagct ttatccatac cgcgttttac ctcgatagga
     3241 tttgcacctg ctgtgatatt tcttaaacct tctttgaaaa ttgcatgagc taaaaccgtt
     3301 gcagtagttg ttccatcgcc tgcttgatca gctgttttac tcgctacttc tcttacgagt
     3361 gaagcaccca tattttcaag actatcttta agctctactt ctttagcaac acttacgcca
     3421 tctttagtaa tgcttggagc accaaagctt ttttggatta aaacattgcg tcctcttggc
     3481 cccatagtta cttttaccgc gtcattaagt tttttaacgc cctcataaag tttatttctt
     3541 gcttcatctg aaaaaataat ttcttttgcc attttttatc cttttttata aattatttta
     3601 aaattcctaa gatatcatct aaatttaaaa ctaaatattc attattatca agtttaattt
     3661 ctgttccacc gtatttagca aacacgattt tatcaccatt tgcaatatca gtgatttctt
     3721 tacttactgc tactacttca cccattaaag gcttttcttt agcattatct ggtataatta
     3781 tgcctgaggc tgttgtttta gtttcttcta cgcgtttaac tagaacacgc tttcctaaag
     3841 gttgaaaatt catttttgtc catccttaaa aatattgatt ttagcactct tttatttaga
     3901 gtgataatat catactataa aaaatgaatt ttgtcaatac tttaaattaa aatatttata
     3961 aaagtttagt tttgtagact aaagttattt tataaaataa actaaaggat aaaaatgaaa
     4021 aagatttttt atggagttat agcttttgtt gttgtgcttt tgattgctat ttataccata
     4081 cttttcacaa gttttggtaa taatatagtg gcaaatatag cgcaaaaaaa gattaaagaa
     4141 agtgcgggat tagatgtaaa tatcacgcat tttaatttac gtttttcaaa tcttgaattg
     4201 caagcaaata tcgcaaatat ggcagatttt aatcttaagg gagctttgag tccttttaag
     4261 cttggatttg atcttgacta tcttatttct ttaaatcaaa attatgctaa aaatttaggt
     4321 ttaaatttaa atcaaaacct ttcttttggt ggtaagattc aaggtaaagc aagtgatttt
     4381 actttagatg gaaagggtta tttactaggt tcaaatgtac ttttaaatgc aagaatgtat
     4441 aattacagcc ctattgcttt aaatttagat gcgcaaaatc ttaagataga agaaatactt
     4501 catcttttat cttaccctag ttacgctaaa ggttttttaa atgctcaagc aaaaatttca
     4561 gcacagaatt taaaacctga tggaaatatc atcataaaac ttgatacaag ttatataaac
     4621 tatgaggcga taaaaaaaga tttttcttta gacttgcctt taaattctaa tcctaaagca
     4681 gaaattttgg ccaatgttaa agaagataag atttatgctg taagtaaaat ttacaatgat
     4741 tatcttaact tacaaaccca aaaaactctt tatgatatta gcaagaatgc tttaagcact
     4801 gattttaatt taagtattcc ttctcttgta aagcttgaaa aacttacaaa aactagacta
     4861 aatggtagtt tggatgtgat aggtcaaaca agtgttgtaa ataatgcctt atcaagttta
     4921 aatgctcaag ttatcggact tggtggagag gtaaaggcaa gtttgaaaaa taataaaatt
     4981 tttgcagata ttaatgaagc aagtttggaa aaattattag ctcttgcagg atatggagct
     5041 ttagtttctg gaaatttaaa tgctaaactt ttaaatgcgg atttggattt ttctaatttc
     5101 gatcttgagg caaaaataaa caatgcaaag attaacacca atgagcttaa aaaaattgct
     5161 aaaataggac ttccaaatac aatttttagt cttgatgcta aagcaaatgc aaaaaatagt
     5221 aatatttctt acaatgcttt acttgcttca aatttactta atatcaaaaa acttcaagga
     5281 acttataatt taaaaaatag tgagttaaat acagatttaa atgcttttat tgatgacttg
     5341 tctcagttta gtgctatagc aggacaaaaa ttacaaggta aggcagatct tactgcaaaa
     5401 gctcatatta taggcactca agtacaaaat ttaaatgcaa atgcaaattt ggcagatggt
     5461 gtaatcaagg ctgattcaaa tggtaaaaaa cttgatttaa acattgataa acttgattta
     5521 tctaaacttt ttgttataac aggtatgcca aattatgcca gtgggattgt taatgcaaaa
     5581 gttaatttag ataatatcga ttttaacaat cttaatggta aagcaaattt agaagctaag
     5641 ggtattttaa atgctgcaac tttaagtaaa attttaaata aaaattttcc aaacaataca
     5701 agttatgatt taaataccaa aattaatttt aaaaacaata tcgctcaatt tgattctgtt
     5761 ttaaattcat ctttagctga tcttacaaaa ctacaaggaa attttgatat aagtaagatg
     5821 cttttaaatt cggattttaa tttaaagata aatgattttt caaaactagg ctttttgtta
     5881 gatagaaaac ttaaaggtaa ggcagaattt aatggaaagg taggttttga taagagttta
     5941 aattttgttg taaatagtcc aaatttattt gaaggaaaac ttcaaagcac atttaaagat
     6001 aaccttttac ttgctgattt aaacggagtg gatttaagta gtctagctca gggtttggat
     6061 tttatggata tttatcaagg taaggcggac atgaaggcaa attacaatct tttaagcgaa
     6121 gaaggcgagg ttaatttgga tatgaaagag ggtaaattaa aaccaaatct tattaccaat
     6181 gctttaaaaa ttttaacact aaaagatatt accaatgatg tttatcgcac tgctaatgct
     6241 aaagctttga ttaaaaaaga aaatatcaag cttaatctta atatgcaagc agatcgttct
     6301 tatattttag tacaatcagg agctttaaat tctaaaagcg gggctttaaa tttgcctttt
     6361 gatattaaac tcgatagagc taattttaaa ggaagtatta caggaactac ggaaaatcct
     6421 aaagtaaatt taaatgcagg aagcgtgtta aattctatta aaaatgtagt gggtggcggt
     6481 gtgagtgacg gtgctaaaag tactggcgat aaagttgata aagcggtgaa taaattatta
     6541 aataagattt tttaaggtaa aaaatgttta atggactcat aagagaaatt gctaaagttc
     6601 aatcttatca aaacaatact ttaagcttaa aagcaaaata tcgcccaaat cttggcgata
     6661 gcatagccgt aaatggagtt tgtttaagtg taacaaaact ttatgaagcg ggttttgaag
     6721 tggagctttc tcgtgaaagt cgcactcata tggctataga gaatttaaaa gataaagttc
     6781 atatagaacc tgctttaaga tatggcgata gaatcgatgg acatcttatg caaggacata
     6841 ttgattttat cggcacactt gaaaagattc aaaaagatga aaatggagta gattttcata
     6901 tatctttacc caaagaagct atgaaattta tggcagaaaa aggaagtata gctgttgatg
     6961 gagtaagtct tactatcaat gaaattttaa aaaatggtat taggcttact attattccta
     7021 ttacctttaa agaaacgctt tttaaagact atcaagtagg tagaaaaatc aatatagaaa
     7081 gtgatttact tgctcgttat atttatgcac aattacaagg taaaaacaaa ggattatcat
     7141 gggaagaagt cgaaagaatt tcttatcttt attagaaaat gataaagtcg gtattttttg
     7201 tgcttttgat aaggattata atgtttttag agctaaaatt cataatgaga atttattttc
     7261 tcatttaggt tttaaagata ttgaaaaatg tgtttttatg gatcaaattc attctcataa
     7321 agttatcatt tatgatgaaa atttaaaaaa tctcagttgt gatggactta taagcaagga
     7381 aaaaaatatc gctctttgtg ttttaagtgc ggattgtctg cctttgattt tatatcatga
     7441 aagtggtatt atagcagctt tgcattcagg tagaaaagga agctttgaaa atatcctaaa
     7501 agaatgtgtt gatcaaatta ctatgcaaaa ttcacattta gataagaata aatttcatct
     7561 ttttatcctg cctggaattt gtgctaaaaa ttatgaaata gatggagaaa ttttagaatt
     7621 tgctaaaaaa gaatttaaag aatttgttca agatgataaa cttgatttaa aagctttagt
     7681 aaaatttcaa gcgcaaaatt taggcattga aaatattaaa gattgtggaa tttgtagctt
     7741 tgatgatgag agtttttttt cttatcgtcg tgataaaacg actaagcgtt ttgtgagtgt
     7801 ggtttattta aaggattaaa atgtatgaaa gaaaagattt aagggtgtta aaaatcattc
     7861 aaaaagctag agaatttggc gatggagatt tgttaaatga aactttggtg aaacaattga
     7921 ttgatgcaga tttttgtgaa attaatgaaa aagaaaaaga agagcttgca actcttctac
     7981 attctttaat caatgcaaaa gataaagcgt tattgagtaa ttaaaattct atatagtttt
     8041 caaaatcttc ttcttttgga ggattaggtt gattcgaggc tagggcttct ttaacaacct
     8101 gctcgtatcc agctatgata tgtttaaaat tctctttcgt ttttccacta agttctgatt
     8161 tggcgatttt tacaacagat gcaggattta tagctttatt atttaaatat actccaaaat
     8221 gcaaatgagg acctgtgctc atacctgttg aaccaacata tgcaattact tgtccttgat
     8281 ttaccttttg tccgttttta atttttgcaa aacgactaag atgagcatat aaagtcatat
     8341 aacctgagtc atgcttgatt tgaattacat ttccataacc accttttgtg cctataaagg
     8401 ttactactcc tttgccagca cttttcacag gagttccagt aggtgcagca tagtctatac
     8461 caagatgagc acgatagcgt tttaatatag gatgatatct tgctgttgta aaaggagagg
     8521 aaattctagt gtagttcaca ggttttgtaa gtaaaaaaga ttctaattct ttaccatcgc
     8581 gatcatagaa tatatcatta taagaaaaga cttctctagc gcttttattg atttctacca
     8641 ttgccatttt tatatttata tcaccccaaa gtttacccat gcgtcttttt tgttcataat
     8701 atagggttac ttcatcacct ttttggatat tgcgaaaatt tatacttcct cgaaaagcac
     8761 gaaccatagc acgagctaaa gtactgctac cactttcctc atagacatct tgataggcag
     8821 aacttttaat ggttaaatgt aaaattctat cttctttttg ataagataca ggagtaaaag
     8881 caagagtgta ttgtccatct ttatctttat agatatgaat ttgtaaatca tcactaattg
     8941 gaattaaaac ttgttctatg ttgttgtttt catcttttaa aacttgatat tttattttat
     9001 aggctatatc agaagcaagt tcttgatctt ctctatcaag tccataataa agtgacatag
     9061 gtatggaatt tctttgtaag aatttaagta aggtatctcc attatcccaa gttagctctt
     9121 caacacttaa agctgcaaaa ctttgaacaa caaaaataaa taaaagcaat aattttttca
     9181 tgagatgacc ttaattttta aaagaatttt gaaatttgaa agctatattt tactttattt
     9241 ttcttacaat tgcttaacaa aaaaggatta taattctata aatttttatt taaggagcaa
     9301 atttgtttaa aactatagtg tgttttttag ctttaaacct tagcctcttt gcggttggat
     9361 ttgatttaaa acctataaaa agtgaacttg taaaagttga tgatatttat ggttatatta
     9421 aagatagtga tgatataaaa ctttattcaa gtggcgtagt agtacaacat tttagcaatt
     9481 cgcaaagtat catcgctaga gcaagtgtta tagataaaaa aaatggtttg gcaaaattag
     9541 aatttagcat tttctcagct cttaagcaag atgctttgcc tttgccaaat gttttaccta
     9601 aagtaggtga tgaggttgtt ttaaattttc tttatgatag aggattggta attgctcctg
     9661 atgaacaaac ttataatgaa cttgttagag aatttccgca gatatatttt acccatattg
     9721 acatttttgg agcacaatta attagaacgg ctactctttc tcctaagcgt tcagatctta
     9781 ggcaattttg tgatgataat gcggttggta ttttggttgt agctttggaa aatcaagcag
     9841 aagttgtgga ttgtcaagat tttaataagc tttatgaagt gcctataagc aaaccaatta
     9901 gcgttcaggt tcctttttat tctcgtatag gtggatataa aagtaatttt tttgatttta
     9961 actctcaaga aataggaaat tattatagat attatgatgc tttgattaat cttcctaagg
    10021 tgcaataaac atgaaaaaag aatttgaaca atattttaaa cgatttttag gagaagaaaa
    10081 cgcttatttt gatgaaattc acaaaagagc ttatagctat gatgcgacaa aaaaacatta
    10141 tttacccgat ggggttcttt ttccaagaaa tgaagaagat attgctcaaa ttttaaaatt
    10201 ttgcaatgaa aataatatca tagtcatacc tcgaggctca ggatctggtt ttacaggagg
    10261 agctttagct gttaatggcg gggtggtgct tgcttttgaa aagcatatga ataaaatttt
    10321 agaaattgat cttgaaaatt tagtggctgt tgtgcaacct ggggttatta atatacattt
    10381 acaaaaagaa gtggctaaat atggactttt ttacccacct gaccctgcta gcatggagta
    10441 ttcaagctta gggggtaatg taagcgaaaa tgctggggga atgagagctg caaaatatgg
    10501 cattacaaaa gattatgtga tggctttaag ggctgttttg cctagcggag aaatcattcg
    10561 tgcagggaaa cgcactatta aagatgtagc aggttataat ttggcaggaa ttttaatcgc
    10621 tagtgaaggt tctttggcag ttttaagtga gcttacttta agattaatac ctttgcctaa
    10681 atttaaaaaa actgcttttg ctatttttcc aagtgtaaaa agtgctatga atgcggttta
    10741 caaaagtctt gctagcggtg taagtcctgt atctatggaa tttttagaca atcttagcat
    10801 tagagcggtt gagagcaaat ttaataaagg tttgcctata gaagctggag ctattttgat
    10861 tgctgatgtg gatggtaatg ttaaagaggc tattgatgag gatttaagaa atttagaata
    10921 ttatttttta gaagctggcg ctagcgaatt taaaatagca aaagatgaac aagaaaccgc
    10981 agatatttgg tttgctagaa gaaattgttc tcaaagcatt gccatgtatg gaactttaaa
    11041 acttaatgaa gatattacag ttccgcgttc taaactacct actttgcttg aaggtataga
    11101 tgagatttct aaaaaatatg gttttaaaat tccttgtttt ggacatacag gggatggaaa
    11161 tgtgcatact aatgttatgg ttcctgataa aaatgataaa gagcaggtga aaaaaggcta
    11221 tgaagctgtg gaagagattt ttaaattaac agtgaaactt ggaggaactt taagcggaga
    11281 gcatggtatc ggactctcta aggcaccttt tatgaattta gctttttctg aagccgaaat
    11341 gaatttaatg agaaatatta aaaaagcttt tgatccaaat aatatactaa atccttttaa
    11401 aatgggactt tagaaggtga aaaatttttt tactatttta ctaaatttgc gtgataagga
    11461 aattttaaat tatgcagcag cgcttagttt ttatactgta ttatctttaa tacctatttt
    11521 atttgtatgt ttttctgttt ttacgcaaat ttccagtttt aaagcttatt atgaaaaagc
    11581 aaagcaagta atttttgctt ttttaatacc aacgcaacaa gatgttgttg ctacctacat
    11641 cgatactttt ttaaaaaata gtgtaaattt gggtattgta ggtcttattg ctatggcatt
    11701 tacttcttta gctttttttt caggctatga ttttgtaatc aatcgcatta ctaaaaatga
    11761 acctaaagga ctttggcaaa gtattagttc ttattggact cttttaactc ttgttccttt
    11821 ggggcttggg cttagttttt atatttcagg ttttatccaa caaactttag atgattataa
    11881 aatagggttt aatttttttg aaattttacc ctttgtaatt atttggggtt tattttttat
    11941 atcttattca agttctgttc ataagggaac tcttaaaagt ttagctttag tatcttttgg
    12001 agcgggtact atttggtata taggaaaaaa tttatttgta tattacgtgg tatataataa
    12061 aacatacgct agcgtttatg gatctttttc tactatttta ttctttttta tttggattta
    12121 tatttcttgg attatttatc tttttgggct taaactctat tattttctaa atcacaatca
    12181 taatgaaggg aataaaattc gcaaaaatac aaagaaaagc tagatattta aatcgcacag
    12241 agattaaaga agcaataaga taacttataa aaatccaaaa tgggatatgg atattagttc
    12301 cataaatttt aaatttaaaa aattcatcta
//
LOCUS       DAPIWU010000052        11982 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.052, whole genome shotgun sequence.
ACCESSION   DAPIWU010000052 DAPIWU010000000
VERSION     DAPIWU010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11982
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.052"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            39..334
                     /locus_tag="RJ285_001090"
                     /pseudo
     CDS             39..334
                     /locus_tag="RJ285_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
     gene            310..477
                     /locus_tag="RJ285_001091"
     CDS             310..477
                     /locus_tag="RJ285_001091"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383875.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGGSKL"
     gene            455..661
                     /locus_tag="RJ285_001092"
     CDS             455..661
                     /locus_tag="RJ285_001092"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383876.1"
                     /translation="MMGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQL
                     KGVKFKCKKCKEAIQFYKKYSENF"
     gene            complement(903..1934)
                     /locus_tag="RJ285_001093"
     CDS             complement(903..1934)
                     /locus_tag="RJ285_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HDV7383877.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCAEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(2013..2909)
                     /gene="sppA"
                     /locus_tag="RJ285_001094"
     CDS             complement(2013..2909)
                     /gene="sppA"
                     /locus_tag="RJ285_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDV7383878.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILMPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            complement(2897..4126)
                     /locus_tag="RJ285_001095"
     CDS             complement(2897..4126)
                     /locus_tag="RJ285_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDV7383879.1"
                     /translation="MFIVTARYLFLCDEDFTILENQAFVFEDKILELGELDNLRKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSMLNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLVSTHFLESK
                     AENIWLRESKGSFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            4217..4696
                     /gene="aroQ"
                     /locus_tag="RJ285_001096"
     CDS             4217..4696
                     /gene="aroQ"
                     /locus_tag="RJ285_001096"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDV7383880.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            4699..5172
                     /gene="folK"
                     /locus_tag="RJ285_001097"
     CDS             4699..5172
                     /gene="folK"
                     /locus_tag="RJ285_001097"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDV7383881.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            5182..6636
                     /gene="flhF"
                     /locus_tag="RJ285_001098"
     CDS             5182..6636
                     /gene="flhF"
                     /locus_tag="RJ285_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HDV7383882.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            6629..7495
                     /gene="flhG"
                     /locus_tag="RJ285_001099"
     CDS             6629..7495
                     /gene="flhG"
                     /locus_tag="RJ285_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HDV7383883.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            7514..7870
                     /locus_tag="RJ285_001100"
     CDS             7514..7870
                     /locus_tag="RJ285_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383884.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            7851..8543
                     /locus_tag="RJ285_001101"
     CDS             7851..8543
                     /locus_tag="RJ285_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HDV7383885.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            8543..9622
                     /gene="fliM"
                     /locus_tag="RJ285_001102"
     CDS             8543..9622
                     /gene="fliM"
                     /locus_tag="RJ285_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HDV7383886.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            9619..10461
                     /gene="fliY"
                     /locus_tag="RJ285_001103"
     CDS             9619..10461
                     /gene="fliY"
                     /locus_tag="RJ285_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HDV7383887.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(10510..11110)
                     /locus_tag="RJ285_001104"
                     /pseudo
     CDS             complement(10510..11110)
                     /locus_tag="RJ285_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
     gene            complement(11095..11271)
                     /locus_tag="RJ285_001105"
     CDS             complement(11095..11271)
                     /locus_tag="RJ285_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-structuring protein H-NS"
                     /protein_id="HDV7383888.1"
                     /translation="MKQKINGYQNSEVRSIPTLSLGSTYSINSDTAVSVNASFRGSSA
                     SPDSIFGISLWKKF"
     gene            complement(11420..11737)
                     /locus_tag="RJ285_001106"
     CDS             complement(11420..11737)
                     /locus_tag="RJ285_001106"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383889.1"
                     /translation="MFLTQTFIYTITPKFDILISGGGSYARAEYTNFFTNEYSSKNRI
                     GFDSLWLGFIYTGDSIADLIPQITFQTAVVQREKAINQTKNFYLKSQSLQASLRGYSD
                     CSL"
     gene            complement(11753..11947)
                     /locus_tag="RJ285_001107"
     CDS             complement(11753..11947)
                     /locus_tag="RJ285_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383890.1"
                     /translation="MKKIYLTFMVLVSCVFASDELNIDSLFKKQIGLRSITSFSLLST
                     GNANSYSLYPNITIGGDPTI"
BASE COUNT         4432 a         1847 c         1847 g         3856 t
ORIGIN      
        1 tatattaaat taatttttaa atacaaaaat taaagaaggt gcttttagat aaactaattc
       61 caacttggaa tgaaaataca gtattcatga cacaatgatt gacattcaac accaaaaact
      121 ttgtgaactt gcaagcaagg ttgaaagtgc tgtttataaa tttgtaaaac gagaagaact
      181 caaagaaatt ttaacagaac tttttaacta tatgaaagaa cattttagta atgaagaaga
      241 ttatatgcaa gaaattcatt atccttattt aaatgaacac aaaatcatgc ataaaatatc
      301 attcgtgata tgtcttatct tatacaaaac ataaaaacca ctaatgattt aaaagagaag
      361 ctttacacag tttctaaaaa atggctttta gaacatatac tctataaaga tgtgaaagtt
      421 gaacaataca gaagatcttc tttaacttct gaagatgatg ggggaagtaa gctttgaaga
      481 agtcaaagaa gaaaaagatg atgaaaatac agtttatctt tatacatgcg aatgcgtaga
      541 acaaatgcat gatgtaccat ttggaattca tcaaaaaatt caacttaagg gcgtaaaatt
      601 taaatgtaaa aaatgcaaag aagccataca gttttataaa aaatattcag aaaatttcta
      661 attaactatt tatgcgttaa aataataaat aaagtataag ttagacaaag aaggaaattt
      721 aaggataaaa aaataaaata ttttattttg gataaatttg actattccta tcctatgcta
      781 accaaagata caaaatgctc attttgtgaa aattttttct cgatagaata tagctcaaac
      841 ttaaaaacaa tagaaaaaga atgtccattt tgcaataata aaatggacat taagcttaaa
      901 gactaagcct tagttttact tacaatatta ataatatttg aagctacttc atcagcaagt
      961 tctaaatgag aagtaaaacc tacacaagaa caattaatct cgcctaaaac atatttatca
     1021 ttgccctttt catcagtatc taaaataaaa tcagccgtcc aaatcaatgg taagtcgtaa
     1081 ttgcctaatt tttcccttac cttaggaagc tcgcctaaaa acatatccac caaagttttc
     1141 caatcttctg gcttatcata gcgatatttt gccccactaa aaagcgtagc agaaaaagca
     1201 tcagcatctt cggctggttt tttatgcact acatttacag gggtgttata aagcattaaa
     1261 agtctgattt caccttcttt aatgcgcggt aaaaaagtca tatccacaag cataccatta
     1321 tcacctatga tatattgctc gcaaaaatcc ataaattccc caagctctct atgttctaca
     1381 tgattatcct tagcttcagc acatttgatt tttgtgttta aaggcaaact atctccacta
     1441 acattaccct ctacactcac acgccaaatt ccctctcctg tagagccacg attttgtttt
     1501 aaaacccttt cacctttagc caaacttttt ggaaaatttt ctttaaaagt cttaatatca
     1561 tagtaagcat aagtatcgct tggaacaaga tcagtatctg ctaattttgt aagtgcatct
     1621 ttagcaccat aacctatcat agcatcagga tgaggcatgc ctacaagctt atcggcacaa
     1681 agttttctta acatatcaaa atactcattt tcttctttaa gattgccagg attgatgcga
     1741 gaaacataac catcaaaatt ttctttcaca tatttgtaaa tttcatcttt tttacccact
     1801 tcaaaaaaaa tcacctcagc attccaaccc ttagctttta aggcatttac cataggcatg
     1861 gtatcttttc tatagccatc ttcaccttta tcactcccac ctttaacttc gaaaaaaaca
     1921 atattttttt tcattatttt actccttatc taagatataa ataattattg cataaaaata
     1981 ttacaaaaat taaataaaaa tatttatata ttttatctag cgtttataaa actgctatta
     2041 gttttataag cgatttcgat taagctttta cttatcaagc ttgatgtttg tccttctagg
     2101 cggttaagaa atttatcaat cttatcttct tctttccaaa caggatttga aacattagca
     2161 agtttttcaa gctccttttt agcattttca taattactaa gctcatctat aagaccaagc
     2221 tccttagcct tggcagctaa aaacactctt gcatttgccc attgatcttt tttattaaga
     2281 tctaatgctc tttccttggc aacaaaacct gtaaaaagat cataactttg atcaattaaa
     2341 ccctgtaaaa aatttctttc attctcattc caagctcttg caaaagttcc agcactttta
     2401 aattcacccg cttgaatagt ttgttcttta ataccgagtt tattagccaa tccgcttaaa
     2461 tcagctcctt gcataatcac accgatagag cctataaaac ttgctggatt ggctaaaatt
     2521 ttattagctc caactcctgc taaataactt ccgcttgcca tagttccgct tgcataaaca
     2581 agcacaggct ttttaatttt taaatccttt atagctagag ctagttccat actaggagca
     2641 aaagctccac caggagagtc tataacaaaa agcactcctt taatattgct atcattttta
     2701 gcattgataa ttttttccaa aaccgcagag ctgtcaaaaa tttcaccctt taaatcaatg
     2761 cgttctaaat ttgcaagatt ggagcttgaa tttgcactag gcattaaaat ccatataaca
     2821 atcaacaata aaacaaaggt tttaaaataa gtattgataa attttatacc gcatcctaaa
     2881 gccttaaaaa atgattttaa aatttgcatt cttttccttt tataaataat ttatctactt
     2941 ccttagcatt taaaataaac tgcaaaggag cttgcttttt atcacattct cctagctcaa
     3001 atacgttaaa atcagcaatt ttaccttttt taagctctcc taaatttaaa tttaaagccc
     3061 ttgcaggata aagtgttacc atttgcaaaa gcttagaggc taactctaat aaatcaaaat
     3121 tcttatgtat aagcaaattc gcgcgcattt catcaagtaa agacaatgaa atatttgagc
     3181 taagtccatc ggttcctaaa tgaatattta atccactttt taaagccgtt tttaaatcta
     3241 agcttttttg acttaaaagg cgatttgaaa atgcacaatg tgtaatagaa tgtaaatttt
     3301 tatctaacca ttcatattct tttagataaa cacaatgcgt aaaaagagtc cttactcctt
     3361 taaaaagttt aacaaaatcc tttggtgtat aaagaggctt aggatgaagt gtgaaatttt
     3421 caagccattt tttaaaactc cctttagact ctctaagcca gatattttca gccttacttt
     3481 ctaaaaaatg cgtactaact agtaaatttt gctttttagc taaatcaaga gcaaaatgag
     3541 ccaaactagg atgagttgaa taaggagaat gaatcgaaat tgccgggata aaaaaatcat
     3601 ttttaaattt caaagaattt tcaaatcttt ttaaaaattc ttgtttttta tcttcaactt
     3661 gattttcatt tgtacccaaa atttcattaa aaaatactat acgcataccc ttgtgactag
     3721 cctttaagca aggatctaaa tcactcccaa aacttgaaat ttcacctata gtgcctatac
     3781 cgcttttttg cattttttta atgctttgaa gtattaattc ttctttggcc tgtgcattta
     3841 acatggaacg agaatttata acacttttaa gccaaattaa aaattctcca aaatgtaaag
     3901 ttgttgaatt tgcactaaat tctaagtgtg tgtgaggatt tataaaagca ggtaaaataa
     3961 ccgaattttt aggtgttttg atgattttag ccttgggata tttttttctt aaattatcca
     4021 attcacccaa ttctaaaatt ttatcttcaa aaacaaaggc ttgattttct agtatcgtaa
     4081 aatcttcatc gcataaaaaa agatatcttg cagtaactat aaacacgatt ttcctttcaa
     4141 aaattacatt gtagcaaaaa tttattttta aaatgttata ataaaaggtt aaaaataaat
     4201 ttttaaggtt aaatccatga aaataatgat tatccaaggc ccaaatgtta atatgcttgg
     4261 cgtaagagaa gtgggaattt atggtgctat gaaaatggaa gaaattcatg agcaaatgaa
     4321 acttgcagca tctcaaaaca atgtagaact tgactttttc caaagtaatt ttgaaggtga
     4381 aatcgtagat aaaattcaag aatgtcttgg aacagttgat ggaattatta tcaacgcagc
     4441 aggctatact catacttcag tagctattcg cgatgctatt gcagcagtag ctttgcctac
     4501 aattgaagta catattagca atgtttatcg cagagaagaa tttcgtcaaa aaagtcttat
     4561 agcgcctgta tgttctggaa ctattgttgg ttttggtcct tttggctatc acttggcttt
     4621 aatgggtata attcaaattt gcgaacaaat aaaaaatttg cgtgcgatgc aacaagcaca
     4681 acaaacgaat aaataataat gctaaaaatt caaggagtaa aacactttga aaaaagtcgt
     4741 ttttttcctt tttttagtca aaatatacga tcttttaaat atttagctct tataggctta
     4801 ggaagcaata tagagcccga aaaaaaaaga tttgatatgc tttttcgagt aatgatggat
     4861 gataaaagat ttaaaatttt atccacatct cctatgttga taaatgaagc ctttggtttt
     4921 aaagagcaaa aagattttac caatgctgtt atgttgatac aaactaattt gcatgcacga
     4981 gcacttttga aagttttact ttattatgaa gtaaaattta aacgcaagag aactttcaaa
     5041 aacgctccta gaacgcttga tttagatctt ttatactttt cacaaaaagt caagcgtgat
     5101 aagtggtgtg aggtgcctca taaaggggct aaagaaagag tgagtgtaat tttgccttta
     5161 ggcatgatat aaggaatata aatgggacaa cttatacata cttttaccgt tgaagataca
     5221 gaacaaatta tacccaaagt aaaagaagat tacggagata aagctttaat tataacaaat
     5281 aaacaaattc gtcctaaaac cttaaatcgc agtgcgcttt atgaggttat ggtagccata
     5341 gaagaaagcg actatgaaga acacttaaaa aaacaaggaa aatctttacc tgcaaaaaaa
     5401 agctcgccaa aaccatcctc tacctctctt gcagaagaaa aaattagatc tcaaatccct
     5461 caagaagatg aagatgtagt cttggatttc tcaaacactc gcttaaatac aaatttaaac
     5521 actgtaaaaa acaatgactt agctaaaaaa acctatcaag attttccaca aaacaaaatc
     5581 aaccctcatc aaaataagac tctaggcttt gatgatttca aagaaaaact aagtgaagtt
     5641 agcaatgaaa tttctaaagt cacaaacaca cctttagaaa attacacccc taatccaaat
     5701 tataataaaa aaatagaaaa ttttgaaaag caatttgaaa aacaaatcaa caagcttaat
     5761 gataaaatag atcttcttgc agatatgatg tgggacgata aagctgaagc tagaaaaaat
     5821 cttatgatac ctcctgaatt tgcaagtatt tataaacaag ccaaagaaag tggaatgctt
     5881 gaaaatcatc tagaagcgat tatgaaagca actatagaaa atatgccagc tgctatgaaa
     5941 accaacaaag atgcggttca aagatatttt cactcacttt taagaaatat cttgccttgt
     6001 cgtgttgaaa gcgatataaa aaaacaaaaa atcatgatgc tagtaggccc aacaggagtc
     6061 ggaaaaacaa caaccttagc taagttagct tttcgctatg cttatggaga taagcgttat
     6121 aaaacaggta ttattacgct tgatacttat agaatcggtg cagttgagca actttttcag
     6181 tatgcaaaaa tgatgaaact tcctattatt gatagcatag aaccaaagga tttagatgaa
     6241 gcgataaaaa gcttaaataa ttgcgaagta attttagttg atactatagg aaattcacaa
     6301 tacgatcaaa gcaaacttgc taaaactaaa gaatttttaa tgcactcaaa tgcagaaatt
     6361 gatgtaaatt tagtggtttc tgcaaacacc aaacatgaag atttaatgga aatttataaa
     6421 aatttttcat tcttaaatat tgatactttg attattacta aatttgatga aacaaaggtt
     6481 tttggaaata tcttctctct tgtttatgaa acaaatattc ctctaagctt tttctctata
     6541 ggacaagaag tgccagatga tttagaagta gccaatagtg attttctagt tcattgtatt
     6601 ttagaagggt ttaacaaagg aaaaaataat gaataaccaa gcaaataaac ttcgcaatct
     6661 catgagtcaa aatggaacca aaaaatccca aaacactcat tttatagcta ttacaagtgg
     6721 aaaaggtggc gttggaaaaa gtacgattag cgcgaatcta gccaatgttt tagcaaataa
     6781 tggctataaa gttgggcttt ttgatgctga tattggcttg gcaaatttgg atgtcatttt
     6841 aaatgtacgc atacaaaaaa atctcttgca tgttttacgc ggagaatgct ccttggaaga
     6901 cattttaata gaagttaagc caaatttatg gctcatccca ggcgaaagtg gagatgagat
     6961 tttaaaatat aatgataaaa atatttacga gagattttta aatcaagcaa gtattttaga
     7021 tgaacttgat tttcttatta tcgacacagg cgcgggtatt ggtggaaata ttttaaattt
     7081 tttagaaatg gctgatgaag ttatagtagt aactgttcct gatcctgcag caatcactga
     7141 tgcgtatgca accataaaaa caacttctaa gacaaaagaa aatttactaa tgctctttaa
     7201 tgttgtaaaa aatgaaaatg aagctttaaa agtttttgaa aatattaaaa aagttgcaga
     7261 tgcaaacatt aaaaatcctt taaatttaga attcttaggt catttaagcg cttctaaaga
     7321 tgtaagtggt agtattaaaa aaagaacttt atttagcgat gaaaacacag cctcaagtga
     7381 tgagattaaa gccctagctt ccaagctttt atatagattg gaacggaaag tgcttgataa
     7441 tgtttcaaat cgtagttttt caagtttttt tagaaaaatt attgaaagat tttagcaata
     7501 aagagaagag attatgaggc cagaaaatta cgtagcattt ttcactgttt gtggattttt
     7561 tataggactt gcatttagca ttattagtat agatgaagcc tttgatatac tgatttttac
     7621 ttgttttatt acttttatgt tttatgtttt tgttcatatt gctattatga attttataga
     7681 tgtaaagaaa attagtggca gaatctttaa taaacacgat tatgaaaaaa ctagcaataa
     7741 tattatcaac gatttagtta ttcgtgaaaa gaaaatggat ataattttag aaaagctcaa
     7801 tgaagaaaga gaagagctaa agaaaaatga attcaaagaa agacgaagaa atgctaaaag
     7861 agccgcctaa agcttatgca caaatgctaa agaaagagca agatgagctt gtgctttctt
     7921 acatgccagc tctgcgtgct atggctttta gactaaaaga acgcttgcct tcaagtatag
     7981 atgttaatga tcttattagc ataggcgttg aagaaatgat aaagctttca cgccgttacg
     8041 ataaagaaca aaatgataac ttctggggtt ttgcaagaaa aagagttaat ggctctatgc
     8101 ttgattatct tagaagtctt gatgtaatga gtcgaaataa tcgtaaaatt attaaagata
     8161 ttgatgcaat catggatgaa tattttttag aacatgaatg cgaacctgat gatgagtatc
     8221 tagccaaaaa acttgattta gatgtagaaa aaatcaaaga agtaagaaca gctcatgcta
     8281 ttagctatac cctgcccatt gatgagcaaa tcgaacttta taatgaagac aatactttag
     8341 aaaaaattga aaaagaagaa cttttagaaa aaattcacga agtgctagat gatcttaaag
     8401 agcgcgatca gttaattatt cagctttatt attatgaaga attaagccta aaagaaatca
     8461 gtgaaatttt acaaatcagt gaaagcagaa tttcacaaat tcacaaaaaa cttcttaaaa
     8521 aacttagaga aaggctagtg taatggctga gatactctcc caagaagaaa ttgatgctct
     8581 acttgaagtt gtcgatgata acaccgacac acccatagcc tcaaattcaa aagatgaaaa
     8641 agatgaaaga aatatcgttg tatatgattt taagcgtccc aacagagttt caaaagaaca
     8701 acttaggacg attaaaggca tacatgataa attagcaaga aatttagcct ctcaaatttc
     8761 atcgatgatg agaagtattg ttgaaactaa acttcattca gtcgatcaga tgacttatgg
     8821 agagttttta atgtctttgc caagcccaac aagttttaat gttttttcta tcaaaccttt
     8881 agatggaaac tgtgttttag aaatcaatcc aagcatagct tttcctatga tagacaggct
     8941 tttaggtggt caaggcgata gctatgaagc ttcgcgtgag cttacggata ttgagcttaa
     9001 tttacttgat tctattttgc gtatcattat gcaaagactt aaagaaagct gggctaccgt
     9061 aactgaaatt tatcctagta tagaagctaa agaatcaagt ccaaatgttg tgcaaatcgt
     9121 atctcaaaat gagattgtta tcatggtagt aatggaaatc atcataggaa attcaagcgg
     9181 aatggtaaat atctgctatc ctgtagtaca tttagaaagt atattaagcc gtttagcaaa
     9241 ccgtgatatt atgatgggtg aaacctcagc caaaaaatca cgtaacaaag agcttaaaac
     9301 tttaatcggt cgtgctgaag tggtatatga ggcaatttta ggaaaaacct taattaatgt
     9361 tcatgaattt ttagaactta aacaaggcga tattttaagg cttgatagag aagcagacga
     9421 taaagctata gtaagtatcg ataaaaaaga tgttttctta gcacaaattg gattgcatcg
     9481 ttttagaaaa tctattaaaa ttttagaact tatacgcaca gataaagatg aaatcaaaga
     9541 aattttggaa aaatacgaag aagagcgtaa agctaaagcc agtgtttatg atgagcctga
     9601 agaggaggat gaagaaatat gatcaatgat tttttaaaaa tgtttacaaa tgaatgcatc
     9661 agcaccattg aaggtttaac aggaaaaagt gctgaattta gcgaatataa agaatttgat
     9721 gtcaatacaa gcgatacttt aaaagcacct ttagtgtatg ctatatttaa tatagcaaat
     9781 ggtggaaaaa taggaatttt agctggtgct gttttaatga gtgctattgg tgaatggatg
     9841 atgggtgaag aagagatcac caaaaacgat aaactgggtc ctgatgaaat ggatgcagct
     9901 aaagaagcca tccaaaatat catttcagca ttttctacaa ccttaggagc ccaaaaagac
     9961 attccaaaaa tggattttag catagaatct tgtgaatttg tgcctgaaag cgtagatttt
    10021 aaagatttta aaaaattatt tttatatgat gtaaaaatag gcgatttaga agaacaagtt
    10081 tctttagcca tggatcaaac actccataac atcctaagcg ggaaacctgc tgaaacagga
    10141 aatacaagca ctgattctaa tcacaatact gaagaaaaag cgataatgct tagcgaagag
    10201 cttaaaaata tcaatcttat catggatgtg cgtttgcctg ttcgtgtgcg tataggcaat
    10261 aaaaaaatgc ttttaaaaga tgttttaact atggatatag gttcagttgt ggagcttaat
    10321 caacttgcaa acgatccgct tgaaatttta attggggata aaagaattgc ttatggcgag
    10381 gtagtaattg tcgatggtaa cttcggcgtt caaattacag aaattggttc taaaaaagaa
    10441 agattagaac aactaagata aaaagtttta gcctacaaat taagaataat aaatataaac
    10501 gaattaaaac taaaacaaac taaaagggct gaaatcaaaa tgtaaagatt ttggagtatt
    10561 taacttaaaa ggttttagct cttttttagg agcaacaatt aaagcataac cacctttatt
    10621 atatctatcc caaatactaa aaaattgact tttagaactt atatattctc catgacttgg
    10681 atcaagcact tgtaaataat tacctttatg attgataatt ataacaaaat gtggaaagcg
    10741 tggatcatct tcaattttta caagcattgg aatatttaca agtttatcca agttttctct
    10801 attgatttga tatgaattgc tttcatagcc tagtttttta actgcatcgc ttaaatctgc
    10861 aaagcttacc atatccgtat aaagttcttg tccgctcata atctttaaaa gttcaagttc
    10921 atcaaacttt ttttgatcat caagtatatt aagtaaagtt gctaaagatg aagcaccaca
    10981 agattgctcg taagtttgcc ttattactct ttcgttttta atttcttgat aggatttaac
    11041 tacccattcc gcttttgcac tcaaagtaag aatgggtaaa aaataataaa atttttagaa
    11101 ttttttccat aagcttatcc caaatatgct atcaggagaa gcagagcttc ctctaaaact
    11161 agcattaaca gaaactgcgg tatctgaatt aatgctataa gtagaaccta aacttaaagt
    11221 tggaatagaa cgcacttcag aattttgata gccattgatt ttttgtttca tttgaaatct
    11281 ttgctctgct cctaaatcta aagtaatttt aggacttaga ataatagata aatccccgcc
    11341 cacataaata ctatttccat actctatttt aagggtttta aattttcttg attgattata
    11401 accaaatcct gtataaatac tataaactac agtcgctata tccccttaaa ctagcttgta
    11461 agctttgtga ttttagataa aagtttttgg tttgattgat tgctttttct ctttgaacaa
    11521 ctgcagtttg aaaggtaatt tgtggaatta aatctgcaat gctatcgcct gtataaataa
    11581 aacctagcca taaactatca aaacctattc tgtttttact agaatactca tttgtaaaaa
    11641 agtttgtata ttcagctctt gcataacttc cgccccctga aataagtatg tcaaacttag
    11701 gtgttatggt ataaatgaaa gtttgagtta aaaacacttg ctttgtatcg tttcaaatgg
    11761 taggatctcc gcctattgtt atattaggat aaagagaata cgagtttgca tttcctgtgc
    11821 taagtaaaga aaagcttgta atacttctta aacctatttg ctttttaaac aaactgtcta
    11881 tatttagttc atcactagca aaaacacaac tgactaaaac cataaatgtt aaataaatct
    11941 ttttcattgt tacctttcta aatattttaa aaaatttttt ta
//
LOCUS       DAPIWU010000053        11402 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.053, whole genome shotgun sequence.
ACCESSION   DAPIWU010000053 DAPIWU010000000
VERSION     DAPIWU010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11402
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.053"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            27..551
                     /locus_tag="RJ285_001108"
     CDS             27..551
                     /locus_tag="RJ285_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HDV7383891.1"
                     /translation="MKKYFQKRYTLAFFIGILAGIFGAIVKWGWEVPFPPRNPNVFWP
                     ADALERVTPPKIFLEQLGLPTDWTYMFSGMQMPLSIFIVHVGFSIIFGVAYCMIAEKW
                     HRITMWQGAVFGFFVYLFAHVIVMPLIAEVPPLSEIPFDEHLSEIFGHIVWLWGMEIV
                     RRDIRNRITKEIEE"
     gene            complement(563..2239)
                     /gene="ilvD"
                     /locus_tag="RJ285_001109"
     CDS             complement(563..2239)
                     /gene="ilvD"
                     /locus_tag="RJ285_001109"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDV7383892.1"
                     /translation="MRSDAIKKGHLRAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSRELIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYESKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDIE"
     gene            2399..3046
                     /locus_tag="RJ285_001110"
     CDS             2399..3046
                     /locus_tag="RJ285_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HDV7383893.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            3111..3350
                     /locus_tag="RJ285_001111"
     CDS             3111..3350
                     /locus_tag="RJ285_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDV7383894.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            3383..3958
                     /locus_tag="RJ285_001112"
     CDS             3383..3958
                     /locus_tag="RJ285_001112"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDV7383895.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(3959..5404)
                     /locus_tag="RJ285_001113"
     CDS             complement(3959..5404)
                     /locus_tag="RJ285_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HDV7383896.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNYKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWEEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAIIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKANENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADMAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVECVEANDLKREFKEGKA
                     INVEIPNSKKTYKADLVLLAMGFSGCEEAIAKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(5414..9904)
                     /gene="gltB"
                     /locus_tag="RJ285_001114"
     CDS             complement(5414..9904)
                     /gene="gltB"
                     /locus_tag="RJ285_001114"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HDV7383897.1"
                     /translation="MDLENILENNQSVGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFMTQELGFELPQKGDYAVAQMFLS
                     PNADAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     VNFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVTPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(10038..11345)
                     /locus_tag="RJ285_001115"
     CDS             complement(10038..11345)
                     /locus_tag="RJ285_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDV7383898.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKSREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLVLQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         3747 a         2210 c         1653 g         3792 t
ORIGIN      
        1 tttgtataaa atataaagga gttattatga aaaaatactt tcaaaagcgc tatactttag
       61 ccttttttat aggtatatta gcgggtattt tcggagctat tgttaaatgg ggttgggaag
      121 taccttttcc tccaagaaat cccaatgttt tttggccagc agatgcttta gaacgtgtta
      181 ctccacctaa aatttttcta gaacaactag gcttgcctac tgattggact tatatgtttt
      241 cgggtatgca aatgcctttg tcaattttta tagtacatgt cggtttttct attatttttg
      301 gagtggctta ttgtatgata gcggaaaaat ggcaccgtat tactatgtgg caaggtgcag
      361 tttttggatt ttttgtttat ctttttgccc atgttattgt aatgccttta attgcagaag
      421 ttccaccact ttctgaaatt ccttttgatg aacacctgtc tgaaattttt ggccatattg
      481 tttggctgtg gggcatggaa atagttcgta gagatataag aaatcgtata accaaagaaa
      541 tagaagaatg aaaggaaacc tttcattcaa tatctaaaac cgcaccttta ctagcattgc
      601 taacaagttt ttgatacatt ctaagccatc ttgaagacac ctctttttga ggcaatgcaa
      661 attctttttt acgtttagca atttcttctt cacttacatt tgcatggata gtataagcat
      721 ctacatcaat ttctatttca tctccatctt ttaaaagtcc tataagacca ccttcagctg
      781 cttcagggga aatatgaccg acgcttaaac cccttgtagc cccactaaaa cgaccatcgg
      841 tgattaaagc tacatcagca cctaaaccca tacccattaa aagtgaagta ggacttaaca
      901 tttcttgcat accaggaccc ccttttggac cttcatagcg tattacacaa acatttcctt
      961 tttgcacctt gcctttgata atgcctttta tagcttcatc ttgagagtta aaacaaacag
     1021 ctttgccttt aaattttctt tctccgatta ttcctgcggt ttttataacg caaccttgct
     1081 cggctaaatt tccaaacaaa atggcaagcc cacctacttt tgagtaagca ttatctactt
     1141 tacgaatgat attttcatct ttaattttgg cattttttaa gcgttctttg agactttctc
     1201 ctgtaatggt cagtgcatca agttctaaaa tatgtccttg tctgcttgaa atttcagcca
     1261 taactgcact cacaccgcct gctttgtgga tatcatccat ataaacacta tttagcgatg
     1321 gggctatttt tgctatatgt gcaactttac ttgagatgaa atttaaatct ttaatgtcta
     1381 gtgctacccc tgcttcacgc gaaatggcaa gcatgtgtaa aactgtattg ctacttccac
     1441 ccattgccat atctactacc atagcattac gcacagcttt ttgagtgata atattacgaa
     1501 ttttaaaacg ttcatctagg gcgatttcac aaatacgacg cgctgctttt cttaaaagct
     1561 cttctctttc tttacttaaa gctaaaatgg ttccattgcc ttctagtgct atacccatag
     1621 cttcgcataa ggtattcata gaatttgctg taaacattcc cgaacaagat ccaccacttg
     1681 gacaggctga acattctata tctttaaatt cttcttcact aatttttttg gattcataag
     1741 cccctacagc ttcaaaaaca gagctaaggc tgatcttttc tccttttttg gttactcctg
     1801 aagccatagg cccaccactt acaaaaatgg ttggaacatt gacccttaaa gctcccatta
     1861 acataccagg agtaatttta tcgcagtttg gaatacagat taaagcatca agttgatgag
     1921 cattcatcac tgtttcaata gaatttgcga taagttcacg acttggtaaa gaataaagca
     1981 taccttcatg tcccatagct ataccatcat ctacacctat ggtattaaac tcaaaaggta
     2041 cgcaaccatt tttgcgtatc tcatctttaa tgattttagc ataatcattt aaaaaataat
     2101 gccctgggat tatatctata tagctatttg ctacacctat aaaaggtttg tcaaaatctt
     2161 catctttcaa accacaagca cgaagtaaag aacgattagg tgctcttaaa tgtccttttt
     2221 ttatcgcatc gcttctcatt gtaactcctg ataataattt tttaaaatta tatttagcaa
     2281 agcttaattt ttgtgaaatt tattttgata tacattttca taaatgataa aaattattaa
     2341 ttgacaaaaa tattttttta taatacaata ctttttgata atcaaaaaag gagtcaaaat
     2401 gagacaatat gaaacctata aatgccaaaa atgtggcaat gaagtagaag ttcaaaatgt
     2461 aggtggcggt aagcttagtt gttgtggtga agaaatgaaa tgtatcacta cagatttaac
     2521 tgcagtaaat ttaatgaaag cttttgcagg cgaatctatg gcaagaaaca aatacgattt
     2581 atttgctgat gtagctgaag aagaaggttg gcatgcggtt gctagacatt ttagagaagc
     2641 ggctgaaaat gaaaaatggc atgcaagagc agaatttaaa gcttatcatg aaatcgttga
     2701 tggcaaacct ttagaagtaa ctacaaaaaa cctagtaact gctgcagaag gtgaaaacta
     2761 tgagcacaca actatgtatc caaattttgc aaaaatcgct gaagatgaag gcaaaaaggc
     2821 tatagcgaga ttatttacag ctattggtaa agtagaaatt gaacacgaaa gagaatatct
     2881 agcgcttaaa aaaatgctcg aagaagaaga attttttaat agtgaagtag aagaattatg
     2941 ggtttgtgaa gtatgcggac atatacatcg tggcaaaaaa gctccagcag cctgtccttt
     3001 atgtaaagca ccaaaagagt attttaaacg tgaatttttg ggttaagtta agaaattctt
     3061 atccttttta agataatatt ataattattt tttaataaaa ggataagaaa atgaaaaaat
     3121 tactattttt attttttgct ttaacggctt ttctctttgg tgctgtaaat atcaacactg
     3181 caacactaaa agaattaaaa agtttaaatg gtattggcga agctaaggct aaagcgattt
     3241 tagaataccg caaagaagca aattttacaa gtattgatga tcttaaaaaa gttaaaggca
     3301 taggtgataa gctttttgaa aaaatcaaaa atgatatcac aatagaataa aagggcattt
     3361 ttgcccttct ttttagaaaa atttgaaaac tttatttgac acaaaagaac ttttaaacga
     3421 atttgatata aatttaatcg gtattgatga agcaggacgc ggtgctttag caggtcctat
     3481 gatgatggca gcttgcaaac tgaacaaaca acttgatggg ttgtgtgatt ctaaaaaact
     3541 aagcgaaaaa aaacgcgaag aactttatga aatcatcatc aaaaattcaa actatctcat
     3601 acttgctttt tcttcagaac aaatcgacgc actaggctta agcacttgtt taaaaaaagg
     3661 cttaaaactt ataaaaaagc attttaaaac agaaaataac ttcttatatg atggaaacac
     3721 caacctaggt ataaacggga taaaaacaca aatcaaagcc gatgctagca ttttgcaagt
     3781 aagtgcagct agcatactcg caaaagttag taaagatagg gtgatgaatt tcttagctaa
     3841 agactttcct tgttatgaat ttgaaaaaaa caaagcctat ggcacaaaag cccataaaga
     3901 atttatagct aaatttggaa tttgcaaact ccaccgaaaa agttttaaac ttttatgatt
     3961 attttgctaa attttgatgc aaactcaaag cacattctat accatctttt atagcccaaa
     4021 caactaaaga ttgtcctttt ctagcatctc cacaagcaaa gattttttta tgagtggttt
     4081 ggaaattttc tgtgcttatg ttgtttttct catctaattt cactccaaaa tttttagcga
     4141 tagcttcttc gcacccgcta aaacccatag ctaaaagcac taaatccgct ttataagttt
     4201 ttttagaatt tggaatttca acatttatag ccttgccttc tttaaactcg cgttttaaat
     4261 catttgcttc aacacattct acatgagttt ttcctaaaaa tttctttgtc attttttgat
     4321 attccctagg atctttgcca tatacagcaa tggcttcttc taaaccataa tcagtagtaa
     4381 aaatgtcagc ttttaaaggc caaggattgt tttggcttct ttgcaaaggt ctttttggac
     4441 ttctttcaaa acgcactata gatttagccc cttgtcttgt cgccacagca atacaatcca
     4501 cacttgtatc cccgcttcct ataaccaaga catttttacc tttggccata tctgcaccct
     4561 tgcctgtttt taacaaagtt ttggtatttt gcgttaaaaa atcaagggca aattcaaccc
     4621 cttttagctt tctgccttct atatcaagat ctataggctt gcttgctcct gtacaaagca
     4681 ccaaagcatc aaattctttt agaagttttg aaaccttatc tttgctgtct atattttcat
     4741 tcgctttaaa ttcaatcccg ctttttttaa gcaaatccac ccgtctttga actatacttt
     4801 tatcaagctt catatcaggg ataccataca tcaaaagtcc acctatttta tcgcttcttt
     4861 caaaaacact tactttataa cctagtgaat ttaaagtgtt agcacaagca agcccagcag
     4921 gtccacttcc tatgatagcg atttttttgc cattgtattg cttaggttta tttactctta
     4981 ctaaattttc cttaaaagca ttttctataa tggataattc attatttttt atgctcacac
     5041 taacaccatt tatcgcacac acacaagaat cctcacaagg agcagggcaa acacgaccgg
     5101 taaattcagg aaaaggattg gtaagatcaa gtctttcata agcttcttcc cataaagaac
     5161 gataaataag atcgttccat tcaggaatga gattgtttaa aggacagcct acatcttttc
     5221 cttcgctcat cacacccgta tgacaaaagg ccacaccaca atccatacat cgtccgccct
     5281 gaatttcttg ttctttttta tccaaaggta tagtaaattc tttgtaattt aaaacccttt
     5341 ccttaggagc aattttttta aaatccattc ttttaaaatc taaaaaacct cttgcatttc
     5401 ccatttttac tccttatttt tgtgtgattt tcaaaaatgc tgctaaattt ggatcttttt
     5461 catttttaca aagatcaagc atttttaaca tcttttcata atctcttggc gtgactttaa
     5521 aaaagtcttt tttatcgaat ttttctaaaa tatctttagc ctttttagaa tctgtataag
     5581 tgatatgttt ttctatcaca gcttttaatt ctttttcatc cttagcatta agatctttaa
     5641 tatccacaag ctcggtattt acatgagctt cattgtgtct tccaaagata taaacaacgc
     5701 ccccactcat accagcagcg aaattcgcac ccacatctcc aagaactaca acttgtccac
     5761 ctgtcatata ttcacaacca tgcacgcctg ttcctaaaac cacagccaaa gcccctgaat
     5821 ttcttacaca aaatctttcc cctgctatac catctaaata cacttcacct tttgtagctc
     5881 cgtataaaca agcatttcct gcgatgatat tttcttcagg tgaaaaagtg gcttcatttg
     5941 aaatttttgc tatgatttta ccaccactta aacccttgcc taaataatca ttgctatcgc
     6001 ctataatctc aagtttaata ccctttaaca aaaacgcccc aaagctattg cctgcattgc
     6061 ctatagcttt gatatggata ctatcttcat ctaaagcatc ttttccataa gtttttaaaa
     6121 tttcacttga aagcatagtc gcaaaagtac ggctttgatt tcctacttct aaagaaagtt
     6181 tgataggctc ttttttctcc acagcatttt tacaaagtgg tagtaaaatt ctataatcaa
     6241 tcgttttttc aagtttattg tctttataat ctttaaaatg cacagcggtt ctattataag
     6301 taggcaagga ttttaaaatt ttatctaaat tgagctttcc tgctttacct tgcacacttt
     6361 tttggcggag tttatccacg cgacctatca tatcatctag gcgttcaaaa ccaagccttg
     6421 ccatgtattc tctaagctcc tcggctataa aatacataaa atttaccaca tcatctactt
     6481 tgcctttgaa acgatctcta agttctgtat cttgagtggc tataccaaaa ggacaggtat
     6541 ttagatgaca aactctcatc attgtacaac ctaaaacaat caaaggcgcg gttgcaaaac
     6601 caaattcttc agctcctaaa agtgctgcta tggctaaatc acgcccattc ataagctttc
     6661 catcagtttc taatcttacc ctatctctaa gcttatttaa gatcaaagtt tgatgcgttt
     6721 cagctaagcc taactcccaa ggaattccag catgcggtat agaagttcta ggacttgcac
     6781 ccgtacctcc atcataacct gaaacaagga ttaaattcgc gcctgcctta gccacacctg
     6841 cagcaaccgt tcctatgcca ttttcgctta caagttttac tgaaatttta gcgtctttgt
     6901 tcgcatgttt taaatcataa atgagttgag ccaaatcctc aatagaataa atatcatgat
     6961 gaggaggtgg ggaaataagc gtcacacctg cagtagaatg tctagcctta gctatccaag
     7021 gatagacttt aaagcccatt aattgtccgc cctcacctgg ttttgcacct tgagcgactt
     7081 tgatttgaat ttcttttgca tgacttaagt agtttaaatc cacgccaaaa cgcccacttg
     7141 ctacttgctt aatggctgag tttttatcca caccctcttt gatttcatag cgttcttcat
     7201 cctcgccacc ttcacctgaa tttgatttag cacctatttt attcatagcc tgtgctaaac
     7261 actcgtgcgc ttctttagaa atagaaccat aactcatcgc ccctgttcta aagcgtttaa
     7321 ctatactttc tacactttca accttatcta tactgatagc ttcactaaaa tcaaattcca
     7381 tcaaagaacg caaattaact tgtttttcat ctactaaagc cgagtatttt ttaaagcttt
     7441 tatagtcttt gttgcgacag gcttgctgaa gattaaaaat cacaagcgga tcaattaaat
     7501 gttcttcttt agcacttcta aaaccatgaa ttcctttaga atctaaagcc ttatgtgtat
     7561 cgttaaaagc atgtttgtgt aaagcaatga gttctttttc aaaatcttct aaatccatac
     7621 cttcaatgcg tgaagttgta gaagtgaagt atttatcaat caccttagag cttaagccca
     7681 gacattcaaa aagtgcagag ccattataac tttgcaaggt agaaaccccc attttagaag
     7741 caattttgac tataccactt gaacttgcct tgatgaaatt ttctaccgcc ttttcataac
     7801 ttaaatttaa atctttattg gcaatgagtt tttgtatact ctcataaacc aaataaggat
     7861 taataacagt cgcaccataa cctaaaagac atgcaaaatg atgaatttct ctaggttcac
     7921 cgctttcgat gataagactt gtatgtgttc ttaaattttt tcttactaga tgattatgca
     7981 ctccagaaac agcaagcaaa gcagggatat aagcgttttt ttcatccact cctttatcgc
     8041 ttaaaatgat aatagaaaca ccttttttaa cctcatcttc tatcttaacg caaagttcat
     8101 ctaaagcctt ttctaaagtt tttttagaat aatcataaag tatagaaaat tctttaactt
     8161 gaaatttatt taaagcctta acttcaaaaa gttcttcatt gcttatcaca ggcaaggcta
     8221 tttttacgcg ttttgcattg ttttcatcgg gttttaataa attgccttcg cttcctagat
     8281 aaatccttgt agaagtaaca atctcttctc ttatggcatc aagaggagga ttagttactt
     8341 gtgcaaaaag ttgtttaaaa taattataca aaggttgata agttttagaa agtatagcca
     8401 aaggagtatc tacacccata gctgctatag cttctttacc attttgagcc atagcagcca
     8461 cgctcatttt aagctcatca taactccaac caaaagcttt ttgaagtttt aaaacctcat
     8521 cttcttttaa aaactgatgt ttataaactc cgcttttttg tttttcaagt tcaactaaat
     8581 ttttaagcca ttttttataa ggcttagcat tagcataatg ctctttgatt tcattatcag
     8641 ctataaccct acctcttgct gtatcaacga gtaaaagttt tccaggttct aagcgttttt
     8701 tagctttgat atttttttca tcaagtttta aagcccctgt ttcacttgaa agtatgagca
     8761 tatcatcttt tgtaagataa taccttgaag gacgaaaacc atttctatcc aaactcgccc
     8821 ccataatcac tccatcagta aaaactatag cagcaggtcc atcccaaggc tccatcaata
     8881 aagaatgata ttcataaaaa gcacgctttt tgctttccat attttcattt ttatgccaag
     8941 gttctggcac catcatcata aaagcttctt ctaaagtgcg accatttaga gctaaaaatt
     9001 ctaaagtatt atcaaacatt gcagaatcac tgctaggttt agctatgatg ggaaaaattt
     9061 catctaaatt ttcaaaatac tcactttgca tcaaaccttc tctagctctt atactatcaa
     9121 catttccgcg tatggtatta atctctccat tatgtaccat atagcggttt gggtgggctc
     9181 tttcccaact tggaaaagta ttagtcgaaa agcgagaatg caccaaagcg atggctgatt
     9241 tcatattgac atctttaaaa tcaagataaa aatcgctcaa ttgagttgaa agaagcattc
     9301 ctttataaac tatggtgcgt gaagaaaaac ttgaaaaata aaattttggc acattaatag
     9361 ctcttttttc tataagtcga cgcgtactat aaagcactct ttcaaactca agtcctgcac
     9421 ttattttact tggttttttc acaaaggctt gtaaaaaata aggcatagct tttaaagcac
     9481 ttgcacctat atcgctagga ttaaaaggca cttctctaaa acctaaaaat tcaagttttt
     9541 tatcctttaa accttgtaaa aatatttctt ttgcttcttc tttagcatct gcattaggcg
     9601 ataaaaacat ttgcgctaca gcataatcac ctttttgagg aagctcaaag ccaagctctt
     9661 gagtcatgaa aaaatcatga ggaatttgaa tcaaaattcc cgctccatca cctgaatttt
     9721 cttcagctcc cgcaccgcct cggtgttcaa gattcatcaa aatttctaaa gcgtcacaaa
     9781 taaccttata agaagcaata ccgcgtatat tggcaactgc agcgatacca caggcatcgt
     9841 gttcattttt agggtgatat aaacctacgc tttgattgtt ttctaagata ttttctaaat
     9901 ccattttgct ctccttataa gactgattta aattttgtta gctttataag gattatagca
     9961 tacatttttt taaaatcgat ataattttta tcttaaaaat aaataaatta aaaaatattt
    10021 tgatagattt gcaaaaatta taaaaacatg gcgataatac tacccaaaat caataatgga
    10081 ccattataaa aaataaaagt tggtatgcaa gtatctttaa tgtgatcgtg ttgtttatca
    10141 gcatttaatc ctacagtagt tcccatggtt gtttcactgg ctggacttcc tgcatctcct
    10201 aaagctcctg ctactcctaa gataaatata ataagtgctg tactaaaacc aagttccaaa
    10261 caaataggac aaaaaagcgt agctatgata ggtatagttc caaaagaagt acctataccc
    10321 atagtgatga taagtcctat taaaagcatg aaaaatactg ctaaaaattt actttgctcc
    10381 atccaaggaa cgactgaatt tacaagatct actactgatc cactttcttt taaaacttct
    10441 ccatatcctg cagcaacaag gataacaaaa gctataaaac ccatcatttt aagcccatca
    10501 tcaaaaactt cattgacttt tgaaaattca actccaccca aaataaccat taaaacaaaa
    10561 cccaaaagcc ctgataaagg taaattcata gtcaaaattt gcaaaactaa agttaaaaca
    10621 agcccagcta aaacacccca ttctttacgc gtcatttcaa gattttctaa atccacttta
    10681 gcaatttcta cttcttgata ctctcttgac ttacgataaa acacaaaaag cgctagaaaa
    10741 agtcctgcta tcatacaaat agcagcgaaa tacatagtat ttgtaacatc atttaaagat
    10801 acacttacat tatttgcatt taaattatct tttaaaagat cttgaaaagt aagtccaaag
    10861 cctactggca aaaccatata aggcgtagta agtccaaaag ttaaagcaca agcaaccgct
    10921 ctacgatcga ttttaagttt attaaaaaga cttaaaagag gtggaatcaa caaaggtata
    10981 aaagccacat gaataggaat taaattttga gaaaaacaag aaatcaaagc tatagacaaa
    11041 agcaataaat attttttatg agatataaaa tgacttacta tcttaatcaa atatgcagtt
    11101 aaatttgtct ttgaaatcgc tgcggcaatg gcccctaaaa gtatatagct aagagctgtt
    11161 tttaaatttt ctttcattcc gcttataagt atattcatag tatctacgag ttcaagatga
    11221 gaaaatacac ctgcaacaag agctgagatc aaaagactca aaagtacatt aaaacgaaac
    11281 aaacaaagta aagtcatcaa aacaacactg ataataatag gattagtaag taaagtcaaa
    11341 attattcctt aaataatttt aaaaatttaa ttgtagaaaa aacttagtta aaatgtaata
    11401 aa
//
LOCUS       DAPIWU010000054        11230 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.054, whole genome shotgun sequence.
ACCESSION   DAPIWU010000054 DAPIWU010000000
VERSION     DAPIWU010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11230
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.054"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..392)
                     /locus_tag="RJ285_001116"
     CDS             complement(<1..392)
                     /locus_tag="RJ285_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDV7383899.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGE"
     gene            complement(399..1142)
                     /gene="fabG"
                     /locus_tag="RJ285_001117"
     CDS             complement(399..1142)
                     /gene="fabG"
                     /locus_tag="RJ285_001117"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDV7383900.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(1214..2692)
                     /locus_tag="RJ285_001118"
     CDS             complement(1214..2692)
                     /locus_tag="RJ285_001118"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HDV7383901.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKIKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            2772..3833
                     /locus_tag="RJ285_001119"
     CDS             2772..3833
                     /locus_tag="RJ285_001119"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDV7383902.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKNNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALIGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            3833..5041
                     /locus_tag="RJ285_001120"
     CDS             3833..5041
                     /locus_tag="RJ285_001120"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDV7383903.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDVMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
     gene            complement(5223..5339)
                     /gene="rrf"
                     /locus_tag="RJ285_001121"
     rRNA            complement(5223..5339)
                     /gene="rrf"
                     /locus_tag="RJ285_001121"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(5595..8501)
                     /locus_tag="RJ285_001122"
     rRNA            complement(5595..8501)
                     /locus_tag="RJ285_001122"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(9029..9105)
                     /locus_tag="RJ285_001123"
     tRNA            complement(9029..9105)
                     /locus_tag="RJ285_001123"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9069..9071),aa:Ile,seq:gat)
     gene            complement(9114..9189)
                     /locus_tag="RJ285_001124"
     tRNA            complement(9114..9189)
                     /locus_tag="RJ285_001124"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9154..9156),aa:Ala,seq:tgc)
     gene            complement(9292..10804)
                     /locus_tag="RJ285_001125"
     rRNA            complement(9292..10804)
                     /locus_tag="RJ285_001125"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         3313 a         2405 c         1810 g         3702 t
ORIGIN      
        1 aattctccat tcataaattg cattctagcg cttaaatgat caagataaaa aacttcaaat
       61 tttggatttt gcggagtttc ataaagattt acaagataag gatatttttt aaacatcatt
      121 tttttaactt ctaaatttgg ttcaaaaacc gcattagctc taagtcttaa aaaagtccca
      181 tcttttgcac aagaacaaaa ttcaatacca ttataatttt ttatatgctt aaaaagtcct
      241 tttgtatttg ctgtgcaaaa ataaatttta tctcccacaa gcaatggact ttgtatagga
      301 cgcactctag gatttccaca agttcctaaa gtggctaaaa atgctggtgc attatcatct
      361 aaaaattgtg ctatttcttt taaatccatc atttttcctt acatatataa accaccattg
      421 atcttaagca catcgcctgt cacataagag gcataatcac taagtaaaaa cgctacacaa
      481 ttagccactt cttcaggttc tgcaaagcgt tttaaaggga tattgtcttg ataggtttgt
      541 ttgatttcat cacttaaaac ttcagtcata tcgcttttta tgaaacctgg agtcacacag
      601 ttaaagcgta aatttctact tgctccttct ttagcaaaag atttagtcat agctatcatt
      661 ccacctttac tagcagaata atttacttgt ccagcattgc ccatttctcc gacaatagaa
      721 gcgatattta caacagcacc aaaacgtttt ttactcatgg tttttaaagc ttctctacaa
      781 cctaaaaaag ctgagcttaa atttgtatct acaacgctac taaagtcctc taatttcatt
      841 cttaaagcaa gtttatcatt tgtaacgcct gcattattta caagataact taattctcca
      901 tcactctcaa ctatagtttt tacaccgttt tcaaactcat cttctttgct tgcatcaaat
      961 ttaatcacag cagcaacgcc accacttgca ataatttcat cttttaaagc atctgcaagt
     1021 tcaggttttg aacgataatt gatccaaact ttaagtccaa aacccgccaa agtttttgcg
     1081 atagaagcac ctattccctt acttgctcca gtaattaaaa cattttttcc actaaatttc
     1141 attatctatc cttaataagt ttaattttaa aaattgcaat cttaacaaat ttcttataaa
     1201 aaaggcaaac aaactaaaat aaagcctcat tcatttcttt tggaatttct aagtctaaaa
     1261 ttttaagcac gcttgcagcg atattgctaa gccccatatt atctttaatc tttgaaactc
     1321 cctttgcttg cacaaaaaca aaaacatcaa aagtggtgtg attggtaagc aaatttcctt
     1381 tttcatcttg catagcctcg caatttccat gatcacttgt aatgataaaa gcataatcat
     1441 gcttttttgc acattctata atctcgccca aacaagtatc caccgcttcg acagccttta
     1501 tagcagcatt aaaatcacct gtatgtccaa ccatatctcc atttgcaaaa tttaccacta
     1561 taaaatcctc acccttttct atgccttttt tcactgcatc acacacttca aaagcactca
     1621 tttggggttt ttcatcataa gtttttatct tggggcttgg gattaaaacc cttgtttcat
     1681 tttctaaaag ctcttctttt ccgccattaa aaaagaaagt tacatgggcg tatttttcgg
     1741 tttctgcggt atgaagctga ctaagccctg ctttagaaat cacttgcgct aaagtatttt
     1801 caattttttc tttttcaaaa agcacaggga gtttaaattt atcatcataa acactcatag
     1861 taagtaaatt ttcaaagatt ttttcgcgtt caaactcttt aaaatcctta gaatttaaca
     1921 cttcaacaag ttgtttcatt ctatcatttc taaagttgat aaagataatg ccatcttctt
     1981 ctctcatgcc cttgtaattc tcattttgag ctgctttgat aaactcatca gtaacatttt
     2041 catcgtaaga tttttgtagg tattctaata aatttggcac tttataagcc ttacctaaca
     2101 agcactcata atactctttt accctatccc aacgcttatc tctatccata gcataaaaac
     2161 gcccacaaag cgtagcaaaa tgcacgccta agttttcaca aaattctttt aaatctttta
     2221 tgaaatttaa gccacttttt ggacttacat cacgcccatc agtgattgcg tgagcaaaaa
     2281 cttcattgcc atttttcgca caaatttcaa gcatggcttt aaaatgcgta tccatagaat
     2341 gcaccccgcc atcactataa agccctataa tatgcactct tttacatttt gctaaaagtt
     2401 tttgtaaatt ctcatttttt tcaagttctt tgttttcaat ggctttatta atacgcacta
     2461 aattttgata aataatacgc ccacttccta tacacatatg ccctacttca ctatttccca
     2521 tctgcccttc tggcaaacct acagctaaac cactcgtttt tagtaaagaa tttgggactt
     2581 ccttaaaaag cttttcataa cttggttttt tagctgcttc aaaagcatta aacttactat
     2641 tcttattata ccctattcca tctgtaataa ttaaaacgca tttttgcttc atttttctct
     2701 cttttataag aatttttttg gttagatttt actaaaatta aacttttaaa aaccaaaaag
     2761 aaggctaggt tttgtattat ctttcagatt taagtcatta tgcttttttt acttatatta
     2821 gtgtgcgtgc aggatttgca ttttttatcg ctttatgttt gtctttattt ttaatgccta
     2881 aatttattac ttgggcaaaa gctaaaaatg ctagtcaacc tatttacgaa tacgccccag
     2941 aaactcataa aaccaaatgc catactccaa ccatgggtgg gcttattttc attagttctg
     3001 cagtaatcgc aagtttattt tgtatcaaat ttgataatat ttttgctata agtgctttac
     3061 tttgtttgat acttttttgt ttgataggac tcatagatga tttaggcaaa gttctaaaaa
     3121 aaaataatca ttcaggactt agtccaagaa tgaagctttt agcacaaatc atcgctggac
     3181 ttatctgcat cttaccttta tattttagtt cagagcttag cacggaactt tttatacctt
     3241 tttataaaca ccctcttttt gatatggaaa tttttgccat tgctttttgg attttggttt
     3301 taatttctag ctctaatgct gtaaatttaa ccgatggact tgatggctta gctacagttc
     3361 caagcatttt ttctttatct actttaggga tattcttata tttgagtgga aatttaaatt
     3421 atagtgaata tctacttttg ccaaaaattc aaggacttgg tgaagtagtg attatttgtg
     3481 ctgcattaat cggtgcttta ataggatttt tatggtacaa ctgttatcct gcgcaggttt
     3541 ttatggggga tagcgggagt ttagctttag gtggattcat aggattttta gctatcatta
     3601 gcaaaaatga aattttactt ttactcatag gttttgtttt tgttcttgaa actgtttctg
     3661 taattttaca agttggaagt tttaaaattt ttaataaaag agtatttaaa atggcaccta
     3721 ttcatcatca ttttgaaaaa gttggctggg tagaaaataa aattatagtg cgtttttgga
     3781 tgatagcctt actttcaaat ttacttgcac ttgcatcaat aaagctaaga taatgaaaat
     3841 ttcacttttt ggatacggaa aaaccacacg cgctattgct gaaaatttgg tagataaatt
     3901 tgggcctttt gatatctatg atgatcattt tacagaaaca aaaaaagata cactaggaaa
     3961 tttactttta aatcctaatg attttgatga taatttaagc gatattgaaa ttcctagtcc
     4021 aggttttcca ccaaagcaca aactcattca aaaagcaaaa aatttacaaa gcgaatatga
     4081 ctttttttac gatgtcatgc caaaatccgt ttggataagc ggaaccaatg gcaaaaccac
     4141 caccacacaa atggctacac atttattatc acacattggt gctgttatgg gtggaaatgt
     4201 tggaactcct ttagcagagc ttaatcctta tgcaaaactt tggatacttg aaacttcatc
     4261 ttttacccta cactacactc ataaagctaa acctgaaatt tatgcacttt tacctataag
     4321 tcctgatcat ctttcttggc atggaagttt tgataattat gttcaagata agctaagcgt
     4381 tttaaaaaga atgaatgaat gtgatgtagt aatactgcct aaaatttatg caaatactcc
     4441 aacaaaagct cataaaataa gctatgaaga tgaaaaagat ctagctgtta aatttggcat
     4501 tgatacggaa aaaatttcct ttaaaagtcc ttttttactc gatgctatca tggctttagc
     4561 tatagaaaaa attctacttg atactttaag ctatgagctt ttaaatagct ttgtaatgga
     4621 aaaaaataaa ctcgaagagc ttaaagacag tcaaaatagg ctttgggtaa atgacactaa
     4681 agctacaaat gaaagtgctg taatggctgc acttagtcgc tataaagata aaaaaatcca
     4741 tcttatcata gggggagatg ataagggtgt agatcttagc aatttatttg attttatgaa
     4801 aggatttgat atagaactct atgctatagg tattagtact gaaaaaatgc ttgattatgc
     4861 aaaaaaagcg aatttgaaag cctataaatg tgaagtttta tctaaggctg taaatgaaat
     4921 ttcaaatcac ttaagagtca atgaagtggc tcttttaagt cctgcttgtg caagtttaga
     4981 tcagttcaac tcttacgcag agcgtggaaa agtctttaaa gaatgtgtga ataaaattta
     5041 atttatttta caatccatac aaatatatta aactttccaa acccctaaaa acaccctatt
     5101 ctctctaaaa accctaacca gcaacaaact cttttttaaa cacgattcta agcaccatct
     5161 aaaacaacaa taaaaataaa cataggattt atatataaag taagtaatga agacatttaa
     5221 caagtccgca atgagctact ttccccctgc cagtaaggcg tagtatcatc acccacgatg
     5281 tgcttagctt cttggttcgg gatggagcaa ggcgtttcca catctgtata atcacggaca
     5341 ttgttattta aatattcttt gaaagattga atttaagaat aaaacttaat cttttatttc
     5401 tttacttttt tctttattct ctttcttctt ttcttatctt ttatctttga taagttttta
     5461 tatagaatac ttaaaaaaca atgttaagag caagttctaa tacaaactct acttgaaaga
     5521 tttctattaa actctaaata ttatctatat ttaaagtatt cttaaaaacc ttaacaagga
     5581 agtgatgctt tattaaagat aagccaaacg ctctattagt actggtcagc taaaggactt
     5641 tcatccatta cacacccagc ctatcaaact agtagtcttc tagagagctt agagaagatt
     5701 catcttagag ttggcttcac gcttagatgc tttcagcgtt tatcctttcc aaacttagct
     5761 acgctgcgat gctcttggca gaacaacagc tacaccagtg gtttgttcaa cccggtcctc
     5821 tcgtactagg gtcaaatctc ttcaatcttc ttacgcccac ggcagatagg gaccgaactg
     5881 tctcacgacg ttctgaaccc agctcgcgta ccgctttaaa tggcgaacag ccataccctt
     5941 gggacctgct ccagccccag gatgcgatga gccgacatcg aggtgccaaa cctccccgtc
     6001 gatgtgagct cttgggggag atcagcctgt tatccccggg gtacctttta tcctttgagc
     6061 gatggccctt ccacacagaa ccaccggatc actaagaccg actttcgtct ctgcttgact
     6121 tgtatgtctt gcagttaagc tggcttatac ctttatactc tacgaacgat ttccaaccgt
     6181 tctgagccaa cctttgtaag cctccgttat tatttgggag gcgaccgccc cagtcaaact
     6241 acccaccaga cattgtccca cttgaggata actcaagctg gttagctacc caaataagaa
     6301 agagtggtat ctcaacaatg gctcatatac aactggcgtc atatactcaa agcctcccac
     6361 ctatcctgca cattcttatc caagtagcag tgtcaagctg tagtaaaggt ccacggggtc
     6421 tttccgtctt gccgcgggta ggaggaattt tcacctccac tacaatttca ctggatccct
     6481 ctttgagaca gctcccatct cgttacgcca ttcatgcagg tcggtattta accgacaagg
     6541 aatttcgcta ccttaggacc gttatagtta cggccgccgt ttactcgggc ttcgatcaag
     6601 agcttcgcta atgctaaccc catcaattaa ccttcgagca ccgggcaggc gtcacaccct
     6661 atacatcctc ttacgagtta gcagagtgct gtgtttttgg taaacagtcg ggagggactc
     6721 tttgttgtaa gtttcttcgc tttcggagta aatcctagta cgaagctaac cacaccttat
     6781 accgaagata cggtgctatt ttgcagagtt ccttaaagag agttcttcca cgcgccttag
     6841 aatactcatc ccacccacct gtgtcggttt acggtacggg caacattagc taaacttaga
     6901 aacttttctt ggctcgacgg catcaggggt tcttctatcc atccgaagac ttcaaaaagc
     6961 ctttcagttc tcggagtatt gttatacgga tttgcctgta caacctccta cgaccttaga
     7021 ctagcacttc catccgctag cccccttagc cctaagcgtc cttccatcgc acactaatgt
     7081 tggtattgga atattaacca atttgccatc gtctacccct ttcggactcg acttaggacc
     7141 cgactaaccc tacgatgacg agcatcgcgt aggaaacctt gggtttacgg cgttaatgat
     7201 tctcacatta attatcgcta ctcatgcctg catgctcact tctattcgct ccagcactcc
     7261 ttaccggtat accttcgacg caaatagaac gctctcctac cacttagtaa actaagtcta
     7321 cagcttcggt acttacttta gccccgttat attttccgcg caaaatcact agaccagtga
     7381 gctattacgc tttctttaaa ggatggctgc ttctaagcca acctcctggt tgtttaagta
     7441 acttcacatc gttttccact taagtaagat ttagggacct tagctggtag tctgggttgt
     7501 ttccctcttg acgacggatt ttatcactcg ccgcctgact gctgtgatta catataaggt
     7561 attcggagtt tgatagggtt tggtacattg gtgtatgccc tagcccattc agtgctctac
     7621 ccccttatat tacgacacaa cgctatacct aaatatattt cggagagaac cagctatcac
     7681 gaagtttgat tggcctttca cccctatcca caagtcatcc cggggctttt caacgcctat
     7741 gggttcagtc ctccactagt tcttacacta gcttcaactt gctcatggat agatcacttc
     7801 gtttcgggtc tgcagcatct gactaagcgc cctattcaga ctcgctttcg ctacggcttc
     7861 gcgtttgctt aaccttgcca gacaccacaa ctcgcaggct cattatgcaa aaggcagtcc
     7921 atcaccctgt attcctacat agggctctga atgattgtaa gcaaatggtt tcaggttcta
     7981 tttcactctg atcacctcag ttcttttcac ctttccctca cggtacttgt gcactatcga
     8041 tctggtatta gtatttaggg ttggatcgtg gtcgacccgg attcagacag gattcctcgt
     8101 gtcccgccct actcaggata ctgctagcta aggtttgttt ttcgcatacg ggactatcac
     8161 cctctatggt tatactttcc agaatgttct gctaaactta cctcttgcac attgcagtcc
     8221 tacaaccccc agtgcaagca ctgggtttgc cctcttgcgc tttcgctcgc cgctactgac
     8281 gcaatctcta ttgatttctt ttcctgaggg tactaagatg tttcaattcc cctcgttcgc
     8341 tcctatatag gtaatgtata tctctataca ttgggttgcc ccattcggaa atctacggat
     8401 caaagcttct tgacagctcc ccgtagctta tcgcagtcta gtacgtcctt catcgccttt
     8461 accagtcaag gcatccacca ttcgctctta gtagcttacc ttttttacct tttattattg
     8521 attctaaaac gcatcacttc cttgttaaag tttttatgat aagacttctt tatcttaaga
     8581 cggaaagcat tcaaacactt aatataaaac taaatgattt agtctcaact aagcagtgag
     8641 tttgaaactt gtctttaatt tataatcctt aaatctaata ttctctttat tcatagaaga
     8701 gaagacagct aaaagttaag ttaaactaaa gaaaagataa ataggtttta tcctttaaca
     8761 agtcctgtaa aattgttttt attaaaactt gcttgtgact cttaacaatg ataattaaaa
     8821 agaacattta ggtttaaaac ctaaaggaag tatatatatt aacataatca ttataaatat
     8881 aaatgcataa tgtatatgct acttatatct attaaagtat attcttttat agttaaagat
     8941 aaaaataaat ctaagtatag agtttatatt taatctattt tatatacttg ctttagattt
     9001 taaagcttct ttattcaaat cttttttatg gtgggcctaa caagacttga acttgtgacc
     9061 tcacccttat caggggtgca ctctaaccag ctgagctata ggcccttaat aaatggtgga
     9121 gaatagcggg atcgaaccgc tgacctcctg cgtgcaaagc aggcgctctc ccagctgagc
     9181 taattcccca taaacaatta gctttatcat caatctttga aatctaaaca agaatcaatt
     9241 gagtttatat attgaagtaa tagttgtgag acttattact ttgtactcta gaaaggaggt
     9301 gatccaaccg caggttctcc tacggttacc ttgttacgac ttcaccccag tcgctgattc
     9361 cactgtggac ggtaactagt ttagtattcc ggcttcgagt gaaatcaact cccatggtgt
     9421 gacgggcggt gagtacaaga cccgggaacg tattcaccgt agcatggctg atctacgatt
     9481 actagcgatt ccggcttcat gctctcgagt tgcagagaac aatccgaact gggacatatt
     9541 ttatagattt gctccacctc gcggtattgc gtctcattgt atatgccatt gtagcacgtg
     9601 tgtcgccctg ggcataaggg ccatgatgac ttgacgtcgt ccacaccttc ctcctcctta
     9661 cgaaggcagt ctatttagag tgctcggccg aaccgttagc aactaaatac gtgggttgcg
     9721 ctcgttgcgg gacttaaccc aacatctcac gacacgagct gacgacagcc gtgcagcacc
     9781 tgtctctaag ttctagcaag ctagcaccct cttatctcta aaaggttctt aggatatcaa
     9841 gcccaggtaa ggttcttcgc gtatcttcga attaaaccac atgctccacc gcttgtgcgg
     9901 gtccccgtct attcctttga gttttaatct tgcgaccgta ctccccaggc ggtacactta
     9961 atgcgttagc tgcattactg agatgactag caccccaaca actagtgtac atcgtttagg
    10021 gcgtggacta ccagggtatc taatcctgtt tgctccccac gctttcgcgc cttagcgtca
    10081 gttgagttcc agcagatcgc cttcgcaatg ggtattcttg gtgatatcta cggattttac
    10141 ccctacacca ccaattccat ctgcctctcc ctcactctag actatcagtt tcccaagcag
    10201 tttaatggtt aagccattag atttcacaag agacttgata atccgcctac gcgcccttta
    10261 cgcccagtga ttccgagtaa cgcttgcacc ctccgtatta ccgcggctgc tggcacggag
    10321 ttagccggtg cttattcctt aggtaccgtc agaattcttc cctaagaaaa ggagtttacg
    10381 ctccgaaaag tgtcatcctc cacgcggcgt tgctgcgtca gggtttcccc cattgcgcaa
    10441 tattccctac tgctgcctcc cgtaggagtc tggaccgtgt ctcagttcca gtgtgactga
    10501 tcatcctctc agaccagtta agcgtcatag ccttggtaag ccattacctt accaactagc
    10561 tgatactata tagtctcatc ctacaccgaa aaactttccc tactcaactt gtgttaagca
    10621 ggagtataga gtattagcag tcgtttccaa ctgttgtcct cttgtgtagg gcagattaac
    10681 tataccttac tcacccgtgc gccactaatc cacttctagc aagctagaag cttcatcgtt
    10741 cgacttgcat gtattaggca cgccgccagc gttcactctg agccaggatc aaactctcca
    10801 taaaaattat agatagttta atctttttct tcaaagaaaa agttatgaaa gattaaaaga
    10861 aaagctttta atctttttca ttattagatt gaatagattt tacataatta cttatgccta
    10921 ctggctcaat cgatcactta tttagatttc aaagattgac taataagatt tgaataacaa
    10981 tactaagtta aaagaacaaa acaaaaaatc atttttaaaa gaaaagtttt taaattaaaa
    11041 aacaagattt ataaaaaagc ttttagttta taagataaaa accaaaagag ttaatttata
    11101 aaatctacta agctagtgaa actttataat ttaaaagatt ttaagtcctt ttttcaaaaa
    11161 aggaaatgaa agtataacca attaaactta aaagtgtatt aaacaaagga ttaaatagta
    11221 taaatatttg
//
LOCUS       DAPIWU010000055        11173 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.055, whole genome shotgun sequence.
ACCESSION   DAPIWU010000055 DAPIWU010000000
VERSION     DAPIWU010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11173
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.055"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            35..1027
                     /locus_tag="RJ285_001126"
     CDS             35..1027
                     /locus_tag="RJ285_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HDV7383904.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPNNA
                     FDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQSGFEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            1038..1808
                     /locus_tag="RJ285_001127"
     CDS             1038..1808
                     /locus_tag="RJ285_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7383905.1"
                     /translation="MTLFTKAFCVATLFTGFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKEFHPKEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSNEVKKFIEEKYQGALIPTF"
     gene            1820..4084
                     /gene="metE"
                     /locus_tag="RJ285_001128"
     CDS             1820..4084
                     /gene="metE"
                     /locus_tag="RJ285_001128"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDV7383906.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRIKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            4094..4942
                     /gene="metF"
                     /locus_tag="RJ285_001129"
     CDS             4094..4942
                     /gene="metF"
                     /locus_tag="RJ285_001129"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HDV7383907.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEIASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4964..5155)
                     /locus_tag="RJ285_001130"
     CDS             complement(4964..5155)
                     /locus_tag="RJ285_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383908.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(5152..5832)
                     /locus_tag="RJ285_001131"
     CDS             complement(5152..5832)
                     /locus_tag="RJ285_001131"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDV7383909.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHSP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            complement(5901..7241)
                     /gene="radA"
                     /locus_tag="RJ285_001132"
     CDS             complement(5901..7241)
                     /gene="radA"
                     /locus_tag="RJ285_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDV7383910.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTTKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            complement(7241..8107)
                     /gene="ftsY"
                     /locus_tag="RJ285_001133"
     CDS             complement(7241..8107)
                     /gene="ftsY"
                     /locus_tag="RJ285_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDV7383911.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            complement(8107..8664)
                     /locus_tag="RJ285_001134"
     CDS             complement(8107..8664)
                     /locus_tag="RJ285_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7383912.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISIKKENAVLNFNDEDKATLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            8747..9373
                     /locus_tag="RJ285_001135"
     CDS             8747..9373
                     /locus_tag="RJ285_001135"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDV7383913.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            9294..10847
                     /gene="rny"
                     /locus_tag="RJ285_001136"
     CDS             9294..10847
                     /gene="rny"
                     /locus_tag="RJ285_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HDV7383914.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQRHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            10856..>11173
                     /locus_tag="RJ285_001137"
     CDS             10856..>11173
                     /locus_tag="RJ285_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7383915.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGL"
BASE COUNT         4136 a         1846 c         1695 g         3496 t
ORIGIN      
        1 cttcttatcc ttaattttaa tttaaggagc aaaaatgaac ttacctatac ttgatttaca
       61 agcttatgaa aaagataaaa gcacttttct taaaaattta agagaaattg cttctaaaat
      121 aggttttttt tatcttatca ataccagtat agataaaaat ttaaacgaga aattattcaa
      181 acttggcaaa gaatttttta atctttctag aagttcgaaa gagcttattt ctatggtaca
      241 ttctcctcaa tttagaggtt atactagcga aggttttgaa tacacagcag gatctaagga
      301 ttatagagaa caactggata taggcacaga aagagatgct ttaaactgga atttaaactc
      361 acccttatgg caaagactag aaggtcctaa tctttggcct agtgaaattc cagaacttaa
      421 aaaaactttc ttaacttggc acaaacaaac caaaaaagct tgtttaaagc ttttaaaagc
      481 cttcgctcaa gctcttgatc tacctaacaa tgcttttgat aaactttatg gagaaaattc
      541 ttacgaacat tgtaaaatca tacattatcc aaaaagctca aaaaatatca ctcaaggcgt
      601 aggttcacat aaagatggtg ggcttatcac ttttgttttt caagaaaaac aaagcggatt
      661 tgaagctttt atagatggta aatggcttag tataccccca cttgaaaata gcgttgtagt
      721 taatatagga gaatttttag aactagctac caatggctat ttaaaagcta ctattcaccg
      781 cgtgaattta agcccaaaag aacgctttag catagcttat tttcttggag tgcagcttga
      841 taaggatata cctattttta agttaaatcc agagcttgct aaagaaagta aaggtgtgga
      901 tactgatcct aaaaatccac ttttaagaaa tgttgcaagt aattatttta aaagaatgat
      961 acgctctcat cctgatgtgg caagtattta tcatagtgac ttgatagaaa aatttagttt
     1021 tgcgtaaagg agaaaaaatg actttattta ctaaagcttt ttgcgtcgct actcttttta
     1081 ccggttttgc atgggcaaat gaagaactta aagttggctc ttctataaca cctcatgcag
     1141 atattttaag atttataaaa tcagcacttc aaaaacaagg ttatgattta aaaatttatg
     1201 aattcaatga tggagtaatc cctaatgtaa tggttgaaaa tggtgagtta gatgctaatt
     1261 attttcagca tgagccttat ttaaaagaat tcaatcaaag acaaggcacc catcttgtaa
     1321 aagttgccag tatccatata gaacctatgg cagtgtattc taaaaaacac aaagaatttc
     1381 accccaagga aggacaaagc atttctatac ccaataatcc tacaaatgaa agccgtgctt
     1441 tacgcattgt agcaagcaaa ggacttatag aagttaagga taatgagctc atcactcctt
     1501 tagatatcac taaaaatcct aagaagctta aatttgtaga gttaaaagac gctcaactta
     1561 caaggagttt agatgatgta gattattctc ttattaatag caattttgct attttagcag
     1621 gtttaaaccc tgtaaaagat gggctttata cagaaagtaa atatagtgaa tatggcaata
     1681 tcatcgccgt taaagaaggt aatgaaaacc ttcctaaaat caaagcccta gtaaaggcct
     1741 tgcaaagcaa tgaagttaaa aaatttatag aagaaaaata tcagggtgct ttaatcccta
     1801 cattttaagg agaacaaata tgaaaaattc aatcatttct tacccaagaa taggtgcaaa
     1861 tagagaatta aaatttgcta ttgaaaaata ctttaaaaac caaagttcta aagaggagct
     1921 tttaaagagt gctaaggatt taaggattag acactggcaa gaaattcaaa aagctggcat
     1981 tgattttatc cctagtaatg atttttcact ttatgataat gtcttagatg cagctgtgct
     2041 ttttaacatt gttcatacaa agtataaaaa tttaaattta gatgctttag atgaatactt
     2101 tgctcaaagt cgaggttatc aaggagaaaa tggagatgtt acagccttag caatgaaaaa
     2161 atggttcaat acaaattacc attatttggt gcctgagtgc gataatgctg atattatagc
     2221 tttaacaggg gataaaattt ttaaagaata tctcgaagct aaagagcttg gcatagaaag
     2281 caagcctgtt ttaataggca ttttcacact ttttaagctc attgccttta aagatgaaaa
     2341 aactcaaaaa ctcgccaaag aaaagctttt aaacgcttac atagagcttt ttgataaact
     2401 aaatgaactt aaagtgacat ggcttgaact tgatgagcct tatttggttt atgatttaag
     2461 caaggaagat atcgctttgt ttgaagaatt ttaccaagaa cttttaaatc acaaaaaaga
     2521 tcttaaaatt ttacttcaaa gctattttgg agacttaaga gatatttatc ctaaactttt
     2581 agaaagcaaa tttgatgctt tgggtcttga ttttatcgaa ggtaaacaaa gcttagcctt
     2641 agttcaaaaa tacggctttg ctaaagataa aatccttttt gcaggtctta ttaatggcaa
     2701 aaatatctat actaatgatt atgctaaaag cctaaagctt attaaagagc ttcaaaaata
     2761 tacacaaaat atcatcttaa acacttcttg ctcactttta catgtgcctt atagcactga
     2821 atttgaaagc aaattagatt caaactatct taaacttttt tcctttgcca aagaaaaact
     2881 tcaagaactt aaagatttaa aagaaattct aaattctagc gaagaaaatc cgctctttag
     2941 agccaatcaa gagcttttta aaaatatccc agagcgttta gatgaaaaag tcaaagcaag
     3001 gcttaaggct ttaaaaaaag aagattttac cagaacgcct agttttaaag aacgcgcctt
     3061 aatccaaaaa gaatttttaa aactccctct tttaccaacc acaaccatag gttcgtttcc
     3121 tcaaagtgct gatgtaagat ctaatcgcct tgcctttaag caagaaaaaa tttcagctca
     3181 aaactacact gaatttaacc aacaaaaaat caaagaatgc atacaaattc aagaagaaat
     3241 aggacttgat gttttagtgc atggagaatt tgaaagaaat gatatggtgg agtattttgg
     3301 agagaatcta aagggctttt tatttactca aaatggttgg gtgcaaagct atggcacaag
     3361 gtgcgttaaa cctcctgtga tttggggtga tgtatcgcgc ataaagccta tcaccttagc
     3421 ttggtctaaa tttgcacaaa gtttaagtca aaaaatcgta aaaggtatgc taactggacc
     3481 tgtaaccata cttaattggt cctttccaag agaagacatt agtctaaaag aaagcactga
     3541 gcaaattgcc ttagctataa gagatgaagt attagatctt gaaaatgcag gtataaaaat
     3601 catacaaatt gatgaagcgg ctttgcgtga aaaactgcct ttaaggaaaa gtgattggca
     3661 tagtgagtat ttagattggg ctattcctgc ttttaatctt gtgcatagtg gggtaaaagc
     3721 taaaactcaa attcacactc atatgtgtta tagtgaattt agcgatatct taaaagaaat
     3781 tgacgctatg gatgctgatg tgatttcttt tgaagcttca agatcaaact taagtctttt
     3841 agatacccta aaagctattc gttttaaaac tgaggtggga ccaggagttt atgatataca
     3901 tagccctaga gttccaagcg tagaagaatt aagtttaact atagaaaaaa ttttaaacaa
     3961 attacccaag gagcaaattt ggatcaatcc agactgcgga cttaaaacaa gagcctatga
     4021 agaagttata gcctctctta aaaatttagt tacggctacg caaaaaatac gagaacaatt
     4081 ataaggagtt ttcatgtgta gtttttcttt tgaagttttt ccaccaagaa aggatgaaaa
     4141 tatcaaaaat cttcatgcta tcttagatga tttagggcaa ttaagcccta attttatcag
     4201 cgtaaccttt ggagctggag gctctattaa ctcacaaaac actttagaaa ttgcaagctt
     4261 aatccaggaa gaatatcaaa ttcctagcat agtacattta ccttgcatcc attctagtaa
     4321 agaaaaaatc actcagatac ttcaaaaatg caaagaaaaa aatcttaatc aaattcttgc
     4381 cctaagaggc gatatatgtg agaatttaga aaaaagcaaa gatttttctt atgctagtga
     4441 tttaatttct tttataaaaa aacaagaata ctttgaaatt tatgccgcat gctatcccga
     4501 aaaacataat gaatctaaaa atttcatcga ggatatacac catcttaaaa ctaaggtaaa
     4561 tgcaggaaca gataagctca ttactcaact tttttacgat aatgaagatt tttatacttt
     4621 taaacaaaat tgtgctttag caggtattga catacctatt tacgcaggta ttatgcctat
     4681 tactaacaaa agacaggttt taaaaatttc tcaactttgc ggagctaaaa tccctcctaa
     4741 atttgttaaa attttagaaa aatatgaaaa taatactttg gctttagaag atgcaggtat
     4801 cgcgtatgct tgcgatcaaa ttgtcgattt aatcacaagt ggtgtagatg gaattcatct
     4861 ttatactatg aataaatcca aagcggctat taaaatttat gaagctgtaa agcatttgct
     4921 taaagaagag cttcatgctt agaaaataaa ctattttttg cttttatctt aacttatttt
     4981 cattttttag cttatggttt tctataagta aaacaaaaat taaagataaa agcaaacctg
     5041 gtataatacc caagcaaaga tagaaaaaag aattatattt aaaaaagaag aaaagtgcac
     5101 caaaaagcat taaagctaaa gatgcacctt tgaaaaattc taaaatatag atcaatgacc
     5161 ttcctcaaca acagttgcac ccgctaaata tacataagtt aaaatcataa aaataaaagc
     5221 ttgtaaaaat gccataaaag ttaaaagcac ataagcagga agtggagcta tataaggaac
     5281 taaagctaaa attaccatca aaaataaatc gtcaccttta atatttccaa acaaacggaa
     5341 ggacaaagaa accacacgag aaagatgaga gactatctct ataggaaaca tcaaaggagc
     5401 taaaagttta ataggtccca tgaaatgagc aaaatacttt acaaaacctt gcgccctaat
     5461 accctcaaaa tgataatata caaaaactat aatagccaag gacaaagtca aatttaaact
     5521 tgcagttgga gagtgaaaac caggtattat gcctataata ttactaaaaa acactataat
     5581 ccccaaagtt gcaaccaaag gaagatattt tcttgcacct ttttcacttc ccatggtatc
     5641 tctacccata gataaaactc cctctaaaaa agcctcgcct aaattttgca taccgcgtgg
     5701 aacaagttgc atagaacgag tagccatcat agccactata acagcaatta aagctaccaa
     5761 acctatgtga aaaaaataag aaaaagtatg acttgcatca agcaaagagc taaataaaaa
     5821 taaatctttc atggtttcct caaaaatttt attctaaact cggaatttta gcaaaatctt
     5881 acttatattt taatgaaaat ttacatccat tctaaaactt gtgaaagttc tttagcaaca
     5941 aaacacttaa gccctatatc ttccaaaggc ttagaaggaa caatggcatt tttaaatttt
     6001 tgcattttag cttcttttaa acgcgtatca aggctaaaaa cctctctaat ttctccattt
     6061 aaactaagct cccctataaa aatactatct ttgctcaaag ggcgattttt aaaacttgaa
     6121 ataatagctg caaccacagc caaatccgca gcagtttcac ttacttttac tccgccgcta
     6181 atatttacaa atacatcata atgccctaaa ggaatttcaa gttttctttc aagcaaagcc
     6241 aaaagcatat ctaagcgatt tttttcatac cctgtagcgc tgcgttttgg ataagaactt
     6301 tcacacacta aagcttgaac ttctaaaacc aaagcacgag atccttccat cacaacacct
     6361 aaagcacttc ctgaaatagc ctttccacga gtaaaaaaac gatttgccaa atcttttgca
     6421 ctgatcaaac ccttagtagt catctcaaaa atacctactt cattcgttcc accaaaacga
     6481 tttttaaagc ctcttaaaag tctaatttct ttagtggcat ctccttcaaa ataaagcacc
     6541 acatccacca tatgttcaag aaccctaggt cctgctatag caccttcttt agtaatgtgc
     6601 cctatgataa aagtactgat attataagcc ttgctaacac gcataagttc aaaagtaatc
     6661 tcacgcacct gagtgatgct tcctgctgct gaagtgactt tatttgaata tagagtttgt
     6721 atagaatcaa tgataagaat actataatcc tttttgtgta attcttctaa aatattttca
     6781 aggcaaagtt cagtaagtaa aaataaattc ggagtattag cctcaaggcg atcagctctt
     6841 aatttaatct gagctttact ttcttcgcca ctgacataaa gcactttttt accctgtttg
     6901 gctaaatttg aagcaatttt taacaaaagc gtagattttc ccacacctgg acttccgcct
     6961 ataagcacta aagaaccttc aacaagccct ccgcctaaaa ccaaatcaag ctcattatca
     7021 tctgtgctgt atcttgtaaa atgttctaat tccacatctt caatacaaac agcttcactt
     7081 gttttcatac taacttgcgc aagctctttt aaaactttaa tttgctcagc ttttaattct
     7141 acaaaactat cccaagctcc acaatcagga cattttccaa gccatttgct ttgttgattt
     7201 ccacaagctt gacattcaaa aagtgcttta ttttttgcca ttattcaaaa ataggatcta
     7261 ataaagtatc taaataagca cttgcattaa attcttgcaa atccgtcatt tgctcaccca
     7321 cgcctacata aaaaatagga agctcaagct ctcttgctat actaaaaagt gcaccccctt
     7381 tagctgtccc atcaagcttt gtgataatca caccatcaag ttttacaagc tcattaaaag
     7441 ctttagcttg taaaattcca gcatttccct gtgttccatc taaaactaaa atttttctat
     7501 ggggtgcacc ttctaaagct ttgtttgaaa ttctcacaat tttttcaagc tcatgggcta
     7561 aatttttttg attttgcaaa cgccctgctg tatcgataat aactctatca aaatcctttg
     7621 cttttgcttt agaaatggta tcaaaagcaa ccgctgaagg atcatgccct tgtgcagtta
     7681 aaactatatc tacatccact ttttgcgccc aaagttttaa ttgttcaatc gcacctgctc
     7741 taaaagtatc acacgctcct aaaatcactt tttgattttg gtttttatat aaataagcaa
     7801 gtttggcaat acttgttgtt tttcctgctc catttactcc taaaataagc tctacaaaag
     7861 gtttttcttg attggtttct tttttttcat aaagaaaata agaacccata acacgcttta
     7921 aatcttcttt ttttacttca ttttgaggtg gtaaataata aattatctct tcaactattt
     7981 cataacttac atctgcttca agcaaaattt cttcaagcaa atctttggtt atctttttat
     8041 tctctccttt aatcccaaca atattttcaa gagtttttgc aagtcctttt ttaaaaaaat
     8101 taaacattaa agtatagcct tttgtatatc aatttctagc atttcttcag gaataagccc
     8161 taaatactga ttaatcaatt tagaatgctt gttgtaaaga aacatggtag gaattccatt
     8221 taccccacct aaagctttag ctaaaagata gttattttca ccattagcga ctttataaga
     8281 tattttatgc tgttctataa atttttgaat ctcatcgtta gatttatctt ctaataaaac
     8341 cccaactata ttaaaatcat tattatactt ttcttgtaat ttattaagat gagggatttc
     8401 agcaatgcaa ggggtacacc aagtggtaaa aaatacaaac aaagttgcct tatcttcatc
     8461 gttgaaattt aaaacggcat tttctttttt aattgaaatt gatcctccat caatcaaatt
     8521 aagtttaaaa ttcatatcat cactttgatt tatacttgcc tcggtgctta aatttacatc
     8581 attttgctgc ttttctttat cattgctaca agcaacaaac aaacaagata ttgccactag
     8641 taaaagtatt tttttaatct tcattattta tcaatccttt attcttcttt ataaaaatgc
     8701 taaaattata acatacataa gataatattt ttttaaaggc atattaatgg aaaaaacaga
     8761 ttttagggca ttgcaaaaaa tacgcctttt caaacattca aaactaaatt tcaaacaaga
     8821 ttataaaata tttaaagaat gtcttaaaat aataaaacta tttaaagcta aaaatatttt
     8881 aatttttatt cctttgcatt atgaaccaaa cttaataaaa tttcgccata ttcttaataa
     8941 aaattacaaa ctttttgttc catttatgca agataaaagt ttaaaaattg taaaattaag
     9001 attgcctttt attaaaaaaa ggtttggggt tttagagcct atagattctt tttttaaagc
     9061 aaaaattgat ttagctattg tgcctgtaat tggcgtcgat aaaaatttaa aaagaatagg
     9121 acatgggcaa ggtttttatg atagattttt tgaaaattta aattacaaac ctcatataat
     9181 atttgtccaa agtatagatg ctttaagtca aaataatcta acacaaaagc atgatatttc
     9241 aggaaaatta tacataaacc cttataaaaa atattacaag aaagaaagaa aaaatgatag
     9301 aatcacttat cgcacttata gccgctatag tcggactcgg tataggatat ttagttgcaa
     9361 aaaaaatcaa tgatgccaaa tatgaaattt tcgtagaaca agccaaagct aaagccaaag
     9421 ctatagaata cgaagcggag cttattttaa aagatgcaaa aaattcaatt cttaatgcag
     9481 aattagaagt taaaaaaaaa tacgaagaaa aaactcacaa aattcaaaaa gattttaatc
     9541 aaaaatttga tgatctttct aaaaaagaac aaaaacttca gcaagaagaa gaaaaactaa
     9601 aagaagataa agaatacctt tgcaagtcac aaagacacat tcaaaactta caatctgatg
     9661 ttgataaatt aaaaaataaa tatcaagaaa aacttgacga tgttttaaaa attttagaac
     9721 attcgacagg acttacacaa aatgaagcca aagaaatcat tcttaaaaaa gtagaagaaa
     9781 attctcgcga gcaaattgca catatagtaa gaaaatatga agaagaagca aaaaatgaag
     9841 ctaaaagaaa agctaatttc atcattgctc aagctacttc tcgttttgca ggtgaatttg
     9901 cagctgaaag acttatcaat gttattaaca ttaaaaacga tgaacttaaa ggacgtatca
     9961 ttggtaaaga agggcgcaat gttaaaacct tggaaatggt tttaggtgtt gatattatca
    10021 tcgatgatac accaggtgct attatagtaa gttgttttaa tctttatcgc cgtgctattg
    10081 ctacaaaagt tatagaactt ttagttgaag atggcagaat tcaacccgcg cgcatagaag
    10141 aaattcacga aaaagtgtgt aaagaatttg atagtgccat tctagaagaa ggcgaaacca
    10201 tagttatgga tctaggttta aataaaatac accctgaaat tgtaaaactc ataggaaaac
    10261 tcaaataccg agcaagctat ggacaaaacg ctttagcaca ttctttggaa gtggctcacc
    10321 ttgcaggaat cattgctgct gagtgtggtg gagatgagaa tttagcacgt cgtgcgggaa
    10381 ttttacatga tataggaaaa gcattaaccc atgattttga aggatctcat gtggatttag
    10441 gtgcagaact ttgcaaacgc tacaaagagc atcctgtagt aatcaatgct atttacgcac
    10501 atcatggaca cgaagaagct acaagcatag aatcagcagc tgtttgtgca gcagatactt
    10561 taagtgctgc acgacctgga gctagaagag aagtgttaga agctttctta aaaagagtca
    10621 gtgagctaga agatatcgct aaaagtaaag aaggaattaa aaatgcctat gcaatcaatg
    10681 ccggaagaga aattcgcgtc atagccaatg ctcagcttgt taatgatgat gaaagtgtac
    10741 ttttagctaa ggaaatagca gctgaaattc aagaaaaaat gcaatatcct ggtgaaatta
    10801 aagtcaatgt tatacgtgaa cttagagctg tagaatacgc taaataaggt ttattatgca
    10861 agatatgatt gatactttaa taaaatatgg ttatattgtt ttattctttt actctttagg
    10921 aggtggaatg gttggaattt tagctgcagg agttttaagt tctcaaggaa aaatggatct
    10981 tagtttttgc attgctcttg cttttattgc taataccata ggttcaactt tgctttttat
    11041 acttggaaaa tattataaaa aagacattat gccttatttt aaaaaacacc gacgcaagat
    11101 agcccttgct atgataaaaa caaaacaaca tggaattatt ttacttgtaa ctcaaaaatt
    11161 tatttatggt tta
//
LOCUS       DAPIWU010000056        10950 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.056, whole genome shotgun sequence.
ACCESSION   DAPIWU010000056 DAPIWU010000000
VERSION     DAPIWU010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10950
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.056"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(12..668)
                     /locus_tag="RJ285_001138"
     CDS             complement(12..668)
                     /locus_tag="RJ285_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDV7383916.1"
                     /translation="MSKIDEISSKSKASILEHLKKAYKETDFTRIESIDPVEHIQTTQ
                     DMLAEMKQKMSDNKYIVENATKDTLEEKINEIVARYGFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
     gene            complement(661..2100)
                     /locus_tag="RJ285_001139"
     CDS             complement(661..2100)
                     /locus_tag="RJ285_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDV7383917.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRSKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWAVQNFASVLPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(2097..2837)
                     /locus_tag="RJ285_001140"
     CDS             complement(2097..2837)
                     /locus_tag="RJ285_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDV7383918.1"
                     /translation="MMKKVYFYATCLGTAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKV
                     KDFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            complement(2957..4639)
                     /locus_tag="RJ285_001141"
     CDS             complement(2957..4639)
                     /locus_tag="RJ285_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDV7383919.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNTTTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIVLIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(4811..5380)
                     /gene="cdtC"
                     /locus_tag="RJ285_001142"
     CDS             complement(4811..5380)
                     /gene="cdtC"
                     /locus_tag="RJ285_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HDV7383920.1"
                     /translation="MKKIITLFFIFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(5391..6188)
                     /gene="cdtB"
                     /locus_tag="RJ285_001143"
     CDS             complement(5391..6188)
                     /gene="cdtB"
                     /locus_tag="RJ285_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HDV7383921.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(6185..6991)
                     /gene="cdtA"
                     /locus_tag="RJ285_001144"
     CDS             complement(6185..6991)
                     /gene="cdtA"
                     /locus_tag="RJ285_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HDV7383922.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNVVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            7104..7337
                     /locus_tag="RJ285_001145"
     CDS             7104..7337
                     /locus_tag="RJ285_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HDV7383923.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            7338..8900
                     /locus_tag="RJ285_001146"
     CDS             7338..8900
                     /locus_tag="RJ285_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDV7383924.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            8900..10024
                     /gene="cydB"
                     /locus_tag="RJ285_001147"
     CDS             8900..10024
                     /gene="cydB"
                     /locus_tag="RJ285_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDV7383925.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMVNSILFL
                     PFFLGFLVWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAILLVVGVILVLLGMVQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(10218..10913)
                     /locus_tag="RJ285_001148"
     CDS             complement(10218..10913)
                     /locus_tag="RJ285_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDV7383926.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKVLIEENISVIIPSDEDIKIVNDII
                     FNELCKGEIKQESKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
BASE COUNT         3500 a         1795 c         1764 g         3891 t
ORIGIN      
        1 ctagtataga atcagtaaat aataatatgt gcaatttgtg gcccatgaac accaaaaaca
       61 gtgataagtt ctatatctgc tgttcttgaa ggccctgcta taaataagat attagtaggt
      121 aaaatttcat tttctttttt tactaaattt aaagcttcgc taagactttt aacaacattt
      181 tcttttttaa gcaatactat gcaaagttta ggtgcaaggc ttagcattct aggttgggtt
      241 ttacttgaag gtataagtgc aactccgtga gagcttaccc ctgctcttgc gtgaatgatg
      301 gaaaaatcac tatgaaaaac ttcagatctt aaattttcga tttctttatc aaagcaaatc
      361 tttttttctg ctttgatttg ttctaaattt aaatttaaat ccgctccata aatcatactt
      421 ttaaagccat atcttgcgac aatttcattg attttttctt ctaaggtatc tttagtcgca
      481 ttttcaacga tgtatttgtt atcgctcatt ttttgcttca tttctgcaag catatcttgg
      541 gtggtttgga tatgttctac aggatctata ctttcaatac gcgtaaagtc tgtttctttg
      601 taagcttttt taagatgttc taaaatactt gctttacttt tgcttgaaat ttcatcgatt
      661 ttactcatag cttactcctt ctagtttttg cacttcttta taaagatcca ttttaatttg
      721 aggtaattct ttaaaagcgt accatttttt aatcacaggc aaaacgcttg cgaaattttg
      781 cactgcccag ttgaaataat gtgcttttga aagtgaaaaa cgccatttat ctccattggt
      841 tgcgatattt ttaaattgtt taaaagcaaa ggcttctagg gcattgtgat gaacattgtt
      901 tgctcctaaa ggtggatttt taccttgtcc tattttatcg catcttaatt tgcgaataag
      961 atcagccaaa ggaatttgca ctggacaaac ttcagaacaa cgcccgcaaa gtgaacagaa
     1021 attcaaaata tctcctgtat gatctatacc aaaaatatta ggactgatta cttctcctat
     1081 aggtcctgga taagtggttt gataggcatg tccgccgatt tgatcataaa cagggcaaaa
     1141 attcatacaa gccccacatc gaatacaacg caaagcctca taataatcct catgagctaa
     1201 cattttagag cgattgtgat caaataaaat cacatgtact tctttagggc catctaaatc
     1261 cccatttttt ctagggcctg taatgatatt gttataagtt ggtataaatt gtcctgtggc
     1321 tgaaggagtg agcaaagaaa ccatagtagc cgcatcttca aagctttcca tgactttttc
     1381 tatgccgcaa agtgcgatat gaatatcagg tgctgtagtg cacattctac cgtttccttc
     1441 attttctata agccaaaaag ccccttctct tgacatggca aaattgaccc cactaagtcc
     1501 aagttttaag ccttcaaaat cttttcttaa atgttctcta gctaccgcat ttaaactttc
     1561 aggttcatcg ttttctaaat ttgctcctaa tttttctttg aaaatttctc cgatttcatg
     1621 acggtttcta tgtatggcag gtacaactat atgtaaagga ggctcttcgt taagttgcaa
     1681 aataagctct ccaagatcgg tttctatagc ttttaaccct tttttttcta ggtagtgatt
     1741 taggcctatt tcttcgcttg ccatagattt accttttaaa agcttggtga tatttttttc
     1801 tttcatgatt tcatagacga tttcacaggc atcttcatca ctacttgccc aatgcacttt
     1861 aatgccattt tttgtagcat ttttttcaaa ttctaaaagc ctttcttcta aactcattaa
     1921 ggcattgttt ttagcttgtt tagctttaga tcttaaaccc tgccagtctt taaatctagc
     1981 atcaataaca ttgagtctat ttttttgtaa agtatgcatg gcagtcatta aattttcttg
     2041 catttgtttg tcattgagtt taatttgaac gatttgttcg tgaggaattt tttgactcat
     2101 agtctttctc cttctaagcg tttaagtaaa aagtcatata aatgtatgcc ttttatatct
     2161 aaacccattc ttttcattgt accatctata tttaaaagac aacctccatc gccactgatg
     2221 agatattttg caccgctatt ttgtatatct ttaattttac ttcttaccat agcatttgaa
     2281 atttcaggct cttttactga aaaagttccg ccaaaaccac aacattcttc ttcgtattga
     2341 agttctacta attctacatt ttttagtttt ttgataagat tcttgcttgc ttgtatgctt
     2401 ttttgcactc ttaaagcatg gcaattagaa tgccaagtta cttttatagg tgcaccttta
     2461 tcttcataat ctacttttaa aacttcatca aggtattgtg aaagttctat aaccctagag
     2521 ctaaaatctt tgactttaga aaattcaggt ctgtttttaa aaagttcttt atagtcatga
     2581 ctcatcatac ccgcacaaga accacttggc acaacgatgg gataatcttt atcaaataaa
     2641 tctacattat ataaagcaat ctcacgactt tcatcgaaat aacctgagtt aaaagaaggt
     2701 tgagcacaac aggtttgatt ttttttaaaa atcacttcaa taccttcacg ccttaaaagt
     2761 tttattgcat ttaaaacgct ttgttgcata gcagcagttc ctaagcatgt ggcgtaaaaa
     2821 tacacctttt tcatcatctc tccttttggg ataatttagg ataaatattc taatcctgta
     2881 aaaataaaag caaagtaaaa tttccaacaa atattctaaa aatgaatatt tgttgaaata
     2941 aaacttaaat ttttaattat ttcactataa cttcagggat gattccttgt aagaaaaaag
     3001 ctataatgca agtccaaatt cctattaaaa caataaaagc tacagaatat tttaatgtga
     3061 atttgaaaag atcagattct tttcccacaa gtccaaccgc tgcacaagct atagcaatgc
     3121 tttgtggact gatcatcttt ccaacaaccc cacctactga attagctgct aaaaataaag
     3181 cttcgctaat acctagtttt tgagcgctta cttgttgcaa ggttccaaaa agtaaattag
     3241 cacttgtatc agagcctgtt aaaaataccc ctatccagcc aatgattggt gaaaagaaag
     3301 aaaaagcatc acctgtgtgt gcaaaagcaa gtcctaaagt agtgctcata ccactatttt
     3361 tagagataaa agcaaaggcc acaaccaaac ctatggtgat acaaggtata gccatttctt
     3421 ttaaggtaac ccaaaagcat tctgcagcat cttcggcttt gatttttaaa atagctatag
     3481 ttagaaaagc ggcaagtaaa atcgctgttc ctgcttgagc tacggttttt ccattgatta
     3541 aatctacacc caaggccaaa gataaaggct tagcttctcc tatgcctgtg atagaagggc
     3601 ttaaaattcc agttgtggta ttgctaaatt gtaaagtaat acttgtatag cttaaaattc
     3661 cgtccttgtc aaagagggct ttaaaccaag gttgtgtcca aatgataata caaacaatga
     3721 gtaaaataaa aggtgaccaa gcttttaaaa tttgattaaa acttaaggtg ttatcttgag
     3781 tgaaattgct ttcattgtca aatctaaaaa tattttttgg tttccaaaat ttcaaaaata
     3841 cagtcgtaac tgctaaagaa accacagctg aaataatatc aggtaattcc gctcctaggt
     3901 gatttgagct taaaaattga gtagttgtaa aacttagcgc cgcaactaaa atagctggaa
     3961 aagtttcttt aataccttta aatccatcca ttaaaaaaac tatgaaaaaa ggtatagtaa
     4021 ggcttaaagg aactagcatt ctacctacca tggcagaaac tgaatgctgt tctatgccga
     4081 caagatttgc catagcaata ataggaattc ccaccgcacc aaaagcaaca ggagcggtat
     4141 ttgcgataag acaaagccct gcagcttgta aaggacgcaa gccaagtcct actaaaagtg
     4201 cagcggttat agccacaggg ccaccaaaac ctatagcacc ctctaaaaat gaaccaaaac
     4261 aaaaacctat taaaatcact tgaattctat gatctggagt aatgctcatc acgctttttt
     4321 taatgatttc aaaagaacct gacttgatag aaagtttgta aagaaagatt gccgcgatga
     4381 taatccaagc tataggccac ataccatttg taaagccttg aataaaactt gcacccacta
     4441 aattccaagg cattttatag gcaaataaag ctactaaagt agcaagtata acagttaaaa
     4501 aacctgcttg atagccttta agttttaaaa caaccaaaca aactaaaaaa catagtatag
     4561 gtaaaaatgc cactaaagca cttagccaaa tgtttgaaaa agggtcataa atttgttgcc
     4621 atgttaaaat ttgttccaat ttttcctcct tgataattat tatgtataaa tttattgtaa
     4681 caaaaaatta aattaaaata aaagaattat agagtaaggt aaattacatt gtattattat
     4741 taattatttt gtgtatttta gtaatatcat aaatattaaa taaatataaa aatagaacaa
     4801 gataaaaatc ttattctaaa ggggtagcag ctgttaaagg tggggttata atcattagtt
     4861 catttacttc agcaaaaaaa ataggatcta gggtgcaagg ggctattcca aagcgttttt
     4921 gtataggaat atttggatta aaaaaagtta ctatacattc atcagattcc aaaactaaag
     4981 aacgaatttg cacagctgaa gttgttgttg gcattataga aaatacagtt tctaatttac
     5041 catcttttag atcatcttga caagattttg ctccaaaggt tccatcttct aagatggcta
     5101 aacaaagatc gctttctttt ggatttgtaa attgcacata accaaaagga agttcatcag
     5161 ctaatttatc tttttgtttt aactcatcgc ttaaaacaat ttctttaata ttccaatttt
     5221 gatcaatagg atcttttgag gtatccctaa aggcgcttaa aaaaattccc gtttctaagc
     5281 ttcttataga aaccatttcg gtaaaatctt tcaaatctcc agtaggagtt gcaaaggcta
     5341 aagttataaa tataaaaaac aaagtaataa tttttttcat attaaatgtc ctaaaatttt
     5401 ctaaaattta ctggaaaatg atctgaaact atatgagatc ttaaacttgc aagcattaaa
     5461 attgcagcta aaagcggtgg agtataggtt tgttgtctat ttgaatttcc tgtaattgca
     5521 taatcaagag tccctccgct tgcttgagtt gcgctagttg gaaaaaccac tctaattcta
     5581 tttgctaatt ctctatccac tgtacttgtt atagtagaag gatcacggtt aaaatcccct
     5641 gctatcatcc agttaacttg aggcatattt gcaaaatgtg catctacagc tgtgataatt
     5701 gctcctacat ctgttcctcc attagctaaa gcatggatat tgaaaaaagc atcatttcca
     5761 ttgcgaattc ctataatggg tcttgaaact gtagtaggtg gaggtaaaac aatcacttct
     5821 tcagcttgca ttcttgaaac tatagctaaa tttacacgat tagctcctac atcaacgcga
     5881 gaataataaa taaaaaccct atcaggcctt gaaagagttc ctaaattcca ctcatattca
     5941 tcaataggtg ttccaccttg ttgcacatgg cgtcctgttg gagtggctgt tcttggtaaa
     6001 gttcctgctt cttgtatcat taagatatct aaggggtttg ctccacttac aagttgtctt
     6061 acgctaacac tccatttgct ttctgtggct gcggatgagc cttgcaaatt ccaagtgcca
     6121 acattaaaat tttctaaatt tgcaaaagca aggttaaaag ataaaaataa acatataatt
     6181 tttttcatcg tacctctcct tggcgatata aaggttttgc agtaaaaggc ggagtagtta
     6241 aaaaccattg ttgatcaaaa ttatcttttt ttgcacactc tacggtaaaa attttaaaaa
     6301 ccttgtgaaa atcaccataa agatttgtaa taggtgcttg tatgcatttt ccatttccta
     6361 aatttttaat ttgaaccgct gtattgctca tagggataag tttccacatt tgtgcgtgat
     6421 tgcttgcatc gcaaggataa tggacaattc cattaccata agcattaaga caagtattgg
     6481 ttttggcatt tttaatcatt gcaaaatcat taggataaag caaaagttgc caaactctag
     6541 catcgccaaa tcctttacta tcgattaaag tatagcccca aatccaattt ccttgtgcta
     6601 aagcccaaac cgttaaagct gctccgctag ggcctaaaat ggttaaaaaa tcagaaaccg
     6661 cagggcgatt ttcaaaaatt aaaacatcat taaaagcttc gtctttaaag cgaggattga
     6721 tcccatttac tacattattg ttggcactat tgcttgttct agttaaaggt ggggtaatag
     6781 gagtaatagg tactaaatca gcaccgctaa ttaaacttgg aatttcttga ttggtaggaa
     6841 aagtaggttc aagtcctagt tttaaaggat cagtatcttc aaattcgcca aatgaacgcc
     6901 ccaaaggatt tacattttca aatttagaag aacatgcata aagaaaaaaa gtcataaaac
     6961 aacataaaat aaaaactata attttttgca ttaaaaacct tgatatgtat ttaaattttt
     7021 aagaaaataa taacataaat ttcattataa ttttccgctt tttaaaaatg ttttattttg
     7081 ttgtttttaa aggtagaatt tacatgtatc ttaaacactt atattttagc atctctcaaa
     7141 tttttaattt ttacaaagaa ggttttaaaa atttaactct tggaaagacc ctttggaaaa
     7201 ttatttttat caaacttttt gttatgtttg tgattttaaa actttttgtt tttgatgtaa
     7261 attttaattc tatttttaaa agcgacaaag aaaaaagcac ttttgtactc aaaaatctta
     7321 cactcgaagg aaaataaatg aacgaactta gtagcgttga ttggtcaaga gcgcagtttg
     7381 ctttaactgc actttatcat tttttgtttg tgcctttaac cttaggcttg tcttttatga
     7441 tcgctatcat ggaaaccatc tatgtaaaaa ctaaaaatga aagatggaaa aaaatcacca
     7501 aattttggct ttcattattt gctataaatt ttgctatcgg tgtagctaca ggcattataa
     7561 tggaatttga atttggaaca aactgggcaa attatagctg gtttgtgggt gatatttttg
     7621 gtgcaccttt ggcggttgaa ggtattatgg catttttttt agaggctact ttttttgcag
     7681 ttatgttttt tggctgggat aaagtaagca agggttttca cttactttca acttggtgtg
     7741 tggctatagg aagtaatctt tctgcttttt ggattttagt ggcaaatggt tggatgcaat
     7801 atcctgtagg aatgagcttt aaccctgaca cagcaagaaa tgaaatgcaa agcttttttg
     7861 aagtagcact ttctcctgta gctatttcaa aatttttaca taccataggc agtggttatg
     7921 tgatttcagc tttatttgta atgggaattt cagcttggtt tatgttaaaa ggacgccata
     7981 ttatcgaggc taaaaaaagc ttagttgtag gagctagttt tggtttggtt tgttcaatct
     8041 ttttgttttt cagcggagat gaaagcgctt accgtgtaac tcaaactcaa cctatgaaac
     8101 ttgcagctat ggaaggggtt tatcaaggtg aacatcgtgc aggacttgta ccttttggaa
     8161 ttttaaatcc taaaaaaacc atagataata acgaaagtgt gtttttattt gacattacta
     8221 taccttacgc tctttctata ttaggaaacc gtgatccaaa ttcttttgtt ccaggaattg
     8281 aagatttgat ctatggaaat gaaagcaaag gtatagaacc tatgcaaaat cgtatcgata
     8341 gaggaaaaat cgctatacaa gctctaaaag actataaact tgctaaagaa aacaatgata
     8401 caatagctat ggcaaatcac aaatccattt tagaaactca ttttaaagat tttggttatg
     8461 gatatttaga aaaaccaagc gatactattc cacctgtggc tttaactttt tatagctttc
     8521 atatcatggt tgctttagga agttttttct ttttactttt catcgttacg ctttatctta
     8581 ccatggcaaa tgatattgag aaatttagaa aagtactttg ggtgtgtttg ttatccattc
     8641 cattgggtta tattgccgct gaagcaggtt ggattgttgc tgaagtaggc agacaacctt
     8701 gggcaattca agacttgctt cctgtacata tcgcagcaac acaacttgga aaagtcaatg
     8761 ttcaaatttc attttggatt tttgcagtac tttttacagc cttattgatt gcagaagtta
     8821 aaatcatgct tactcagatt aaaaaaggtt ttgacgcaca tgcaggacat actccactta
     8881 tgggcaaagg agaaaaataa tgttttttgg tttagaactt gaaggtttgc aaatttattg
     8941 gtggttgatt ttaagtttac tcggcggact tttggttttt atgttttttg tccaaggtgg
     9001 acagacttta atcgatgagc ttagcaagga tgagcttgaa aaaaccatgc tagtcaattc
     9061 tttagggcgt aaatgggagc ttggttttac aactctcgta ctttttggtg gagcagcttt
     9121 tgcggctttt ccactttttt atagtacaag ttttggcggt gcttattggg cttggctttg
     9181 tattttattt tgttttattt tacaagctgt ggcttatgaa tatcgcaaaa aagaaaataa
     9241 tgtttatggc tctaaaacct atgaaatttt tcttaaaatc aatggctatt taggtgtgtt
     9301 tttaatcgga gttgcggtaa gtagcttttt tagcggctct gaatttatct taaatgagca
     9361 taattttgtt tcttggcaaa atcctttgca tggcttagaa cttttactta atccttttaa
     9421 ttatctctta ggcttagctt tagtattttt agcaaggctt ttaggtgcag cgtattttat
     9481 gaacaatatc aatgatgaga atatcaaaat aagagctatg aaaaaactca tggtcaatag
     9541 cattttattt ttaccttttt tcttaggttt tttagtgtgg attttcttaa aagatggttt
     9601 tagtgtagat gcaaatggag ttgtaagcat gagtgcgaat ttgtatttat ataatttctt
     9661 aaatcaaatg atttttgcta tcttgcttgt tgttggtgtg attttagtgc ttttaggtat
     9721 ggttcaagga gcaaaaggtt gctctaaagc tatttttacc ctaggacttg gaacggtttt
     9781 aacagttttt gctttattat caagcattgg tttaggtcaa agtgcttttt acccatcttt
     9841 aagtgatttg caaagttctt taactttaaa aaatgcaagt tcaagctatt atactctaag
     9901 cgtcatggct tatgtgtctt tacttgtacc ttttgtttta gcttatatta tctatgtttg
     9961 gaatgcaatg gataaagtaa aaatcacacg cgaagaaatc gcaaacgatg atcacgcata
    10021 ttaaggagaa aaaatgttac atgctttgtt tttattggct tggcctttag taatttatct
    10081 aagctataaa tttatcatgc taaatatcaa tcaattagaa aaagatagca aactataaag
    10141 caagataaga tttaaaccga tataagtata aatcttttca aaatattgca atttgcccat
    10201 ttttgggcat cttttaatta taaatctttt aaagcttcat tagcagcatc aagggcgtga
    10261 ataagacttg tatcaaaaat tttgatattt gtatcatttt tggatattaa taaaccaatt
    10321 tcagtgcaag ctaaaagcac tccctttgcc cctttttctt gtagtttttt tataatattt
    10381 aaatattttt ctttagattc ttgcttgatt tcacctttac aaagctcatt aaaaataata
    10441 tcattaacga tttttatatc ttcatcgcta ggaataataa cgctaatatt ttcttcaata
    10501 agcacttttt tataaaaatc ctgcgtcatt gtgtatttag tacccaataa accaattttt
    10561 tgtatgtttt cttgttttaa agccttagca gaactttttg caatatgtaa aatagggata
    10621 tttatatttt gttgaatttc atcaaaaacc ttatgcatag tattagttgc aattattata
    10681 aaattagccc ctgcaagttc taatttttta gcacattgag tcaaaatttg tgcagcttct
    10741 tgccatttat cttggctttg taaattttct atttcttcaa aattaacact gtaaagtaaa
    10801 atttttgcag aatttaaaga ttttaattta tcatttatag cttgatttat tgttttataa
    10861 taagtaatag tgctttcaaa actcattccg cctataatac caatggtttt catttttctc
    10921 cttaagaatt aatttttgag tcgttttatt
//
LOCUS       DAPIWU010000057        10868 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.057, whole genome shotgun sequence.
ACCESSION   DAPIWU010000057 DAPIWU010000000
VERSION     DAPIWU010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10868
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.057"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..1065
                     /locus_tag="RJ285_001149"
     CDS             <1..1065
                     /locus_tag="RJ285_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HDV7383927.1"
                     /translation="LELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQDDDI
                     YFDFDKDEDTYIVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKNDFL
                     DKYKYLEKFGDEEDKKLYAKYDYLYYASEILDYLPEYIGDGVFYLASKMIEKYPEKKI
                     EILKTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFDN
                     EIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPTLS
                     YKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFEFLA
                     LIEGIQAPSLKNHTLKVSLI"
     gene            1062..1445
                     /locus_tag="RJ285_001150"
     CDS             1062..1445
                     /locus_tag="RJ285_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDV7383928.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1438..2121
                     /gene="rsmD"
                     /locus_tag="RJ285_001151"
     CDS             1438..2121
                     /gene="rsmD"
                     /locus_tag="RJ285_001151"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDV7383929.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            2180..3226
                     /locus_tag="RJ285_001152"
     CDS             2180..3226
                     /locus_tag="RJ285_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HDV7383930.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3226..3567
                     /locus_tag="RJ285_001153"
     CDS             3226..3567
                     /locus_tag="RJ285_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383931.1"
                     /translation="MKMDNFLNTYNMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3630..3827
                     /gene="flgM"
                     /locus_tag="RJ285_001154"
     CDS             3630..3827
                     /gene="flgM"
                     /locus_tag="RJ285_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HDV7383932.1"
                     /translation="MINPIQQSYVANTTLNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATASAIADSLI"
     gene            3869..4303
                     /locus_tag="RJ285_001155"
     CDS             3869..4303
                     /locus_tag="RJ285_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HDV7383933.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDSLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            4313..6139
                     /gene="flgK"
                     /locus_tag="RJ285_001156"
     CDS             4313..6139
                     /gene="flgK"
                     /locus_tag="RJ285_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HDV7383934.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRFP
                     DLQNTGILKDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKINGGQLGAQLDLRGRNYSKSKGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASDMKVKDSILNDPSTVRASSNGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6156..6911
                     /locus_tag="RJ285_001157"
     CDS             6156..6911
                     /locus_tag="RJ285_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004306512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HDV7383935.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFTAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYEKRENTTDAILAFIQKIKTLNSYSSYGYDFFFGKIWQNTPNSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHTHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKERQI"
     gene            6922..7686
                     /locus_tag="RJ285_001158"
     CDS             6922..7686
                     /locus_tag="RJ285_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDV7383936.1"
                     /translation="MGFEHLDTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFSTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7679..8860)
                     /locus_tag="RJ285_001159"
     CDS             complement(7679..8860)
                     /locus_tag="RJ285_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDV7383937.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDSYGIFCIFLFV
                     VFIVMLILAYKNFHSFAFSCDFLFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF
                     N"
     gene            complement(8857..10416)
                     /locus_tag="RJ285_001160"
     CDS             complement(8857..10416)
                     /locus_tag="RJ285_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HDV7383938.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTVIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLSCAIRENQDKMILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(10406..>10868)
                     /locus_tag="RJ285_001161"
     CDS             complement(10406..>10868)
                     /locus_tag="RJ285_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDV7383939.1"
                     /translation="KYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKEL
                     EEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIF
                     WALKANELDKQKQDSWLIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
BASE COUNT         4127 a         1694 c         1570 g         3477 t
ORIGIN      
        1 ttagaattaa gaatttttag atttgataaa accaaggatt atgaggctta ttataaacct
       61 tatatttatg ataattatga aaattttgca agtttttatg atctgctttt gcaagttcaa
      121 gatgatgata tttattttga ttttgataaa gatgaagata cttacatagt tgtaaataag
      181 caaatcatac cactttttac acctttagaa aaaatagcaa aagaatttga ttttagtctt
      241 tgtatcgagc ctttaagcac aaaaagagcc attaaagatc ttatcatcga taaaaatgat
      301 tttttagaca aatacaaata tcttgaaaaa tttggtgatg aagaggataa aaaactttat
      361 gcaaaatatg attatttata ttatgcaagt gaaattttag actatcttcc tgaatatata
      421 ggcgatggag tgttttattt ggcttcaaaa atgatagaaa aatatcctga aaaaaagata
      481 gaaattttaa aaactctagc agataaagaa aagggtattt tttatcatct tgaaagcaaa
      541 aatgaaattt tagaaacaac gatcaaaaac ctacaaaatg aaattttaaa tttagggctt
      601 tttgataaaa atattttaca ctttgattta cctaaaacca atgcttttga taatgagatc
      661 aaagaactta aagaaattaa acataatttt aaagatttca atatagcttt ttatggtttt
      721 aatgcttgcg atactttaaa atcgaaactt aaggctaaat ttatttccta tgaaaacagt
      781 ataaaaaata atggctttag cttgcttaat ctaaatccta cgctaagcta taaaatagcc
      841 gcagatattg ttttggacgc ttatgatagc ggggctgatt ttatggtagt aaaagaagaa
      901 aaagattttt atctttttga tacttgtgct aaaaaactta tgcaaacaag tggaagggaa
      961 tttgaagact tttatatttt gagccgtttt gagtttttag cccttatcga aggcatacaa
     1021 gctccatcat taaaaaatca cactttaaag gttagtttga tatgaaaatc tctttagaat
     1081 gcaaagatct catcatagaa aaaactttag aacttttttt aaaagatcat ttggtaatga
     1141 aaaaaaattg tgatttcatc attagcgatg aaaaaattca taccgcaaaa cccttattta
     1201 tcatctctaa aaactctcca tttttaagca taccatttag caaagaagcc ttgtttgagt
     1261 ctttaaatga atttgataat gccttaaaag cagcagcttt gcaacttgca cttgaacaaa
     1321 aaagactgct tgaagaaaaa attgacgcta ttgctttgga atttaaaaaa gattatgaaa
     1381 ataaaatcga tcttgccata aaagatctta aaaacaaact cgtaaaagca cttaatgatg
     1441 aatgatgaat ttataagcgt taaagacttt tttaatcaca atgaaaaaag aaaaaaattt
     1501 cttcaaaaac aagaaattaa acctcctaaa gaaaaaacaa aaaaaactaa agaaacaaag
     1561 ctttatacaa atatagaaag tggtaaatac aaagggaaaa aactactttt acctagtctt
     1621 acaacaacaa gaagtactaa aagcatagtc aaaagttgtg tttttaatgt aataagagaa
     1681 gatttaagaa gtaaaatttt cattgaagcc tttggaggaa gtgctttaat ggcggctgaa
     1741 gcactaagta atcatgcttt aaaagcttat gctatagaac ttgatgcaaa agcttataaa
     1801 attgctttag aaaatgctaa aaatatagat ccaaatttag aagtgatcca tgcaaatact
     1861 tttgaaattt tacctaaact catagaaaat tcaaaaaatg aaatcatatt atatcttgac
     1921 ccaccttttg ataccagaga aggttttagc gatatttatg aaaaaattta tcatttttta
     1981 gaaaatttag atttaaagac tttaaattta atcatttttg aacaccactc aaccataaaa
     2041 actcccgaaa aaatccaaaa ttttcaaaaa gtcaaagaaa agaaatttgg atcaactagc
     2101 ttaagctttt acgcttctta acttacttgg aacacttctt gcttgatcta tcatcaacaa
     2161 tagattaaag gaagaatcca tgagagtttt aacgatattt ttactcttta tgacaagcat
     2221 ttttgcagtg caaatcaagg atgtagcaaa cactgtaggt gtaagagata accaacttat
     2281 aggttatgga cttgttgtag ggcttaatgg aagcggcgat ggaacaagct ctaaatttac
     2341 actacaatcc atctcaaacc ttttgcaagg tatgaatatc aaagtagatc ctaacgatat
     2401 caaatcaaaa aataccgcag ctgttatggt tacagccaaa cttccagcct ttgcaaaaag
     2461 cggagataaa cttgatatta ccgtttcatc tatgggtgat gcaaaatctt tacaaggcgg
     2521 aacactttta ctgactgcac ttcgtgggat tgatggtgaa atttatgcca tagcacaagg
     2581 ctctatctca acaggaggtt taacacctag accaggagga gcaggttctc actcaactgc
     2641 tgcaactgta atgggcggag ctaatgtaga aagagaaatt ccacaaaatt ttagccaaaa
     2701 caatgatcta accttaagtt taaaagtagc ggattttaaa accgcaaacg atatagaaag
     2761 agttttaaat actgtctttg gcgaagaagt agctaaagcc atcgactctc gcacagtaaa
     2821 actcaaaaaa cctgaagatc tttcaaatgt tgattttatg gcaagagttt tagaacaaga
     2881 tatagcttat aaaccacaaa gcaaagttat catcgatgaa agaacaggaa cagtgattgc
     2941 tggagttgat gtagaggtag aacctgtttt aatcactcat aaagatatca ctataaaaat
     3001 agatccaaac aataacgcag tagctaatca aaatgaaatc gatatgaaag atggtggttt
     3061 tgtagatcca agttcaaata ccttaagaat caacaatgca aaaagcacag ttgcaaatat
     3121 agctagaatg ctgaacaagc ttggagcaac cccaaatgac attatcgcta ttatggaaaa
     3181 tttaaagcgc gcaggtgcaa ttaacgcgga tttggagatc atctaatgaa aatggataat
     3241 tttttaaata cttataatat gaatagtgct ttacttgatc gtgcagccaa agcaagaagt
     3301 ttagaatcaa gcatcaaaat aaatgacaat gatatagtta caaagagcaa agaagatgaa
     3361 gccttaaaag aacaaacgga tgcttttgaa gcattttttt taaagcaagt tttagacgta
     3421 tctttaaaaa gtcaaaattc actctttgga aaagatgcca gcgatgaaat atactcttcc
     3481 atgtataacg ataccatgag taaagcttta agtggaggta tgggtttttc aaaattatta
     3541 tacgattttt taaaagaaag gggttaagtt ttttaaattt gggtcgatat ggtttgtaga
     3601 ggattataac taagatcaag gaggcagaaa tgatcaatcc tatacaacaa agttatgtgg
     3661 caaataccac attaaataca aatagaatag ataaagaaac taaaacaaac gatactcaaa
     3721 aaacggaaaa tgataaagcg agtaaaatcg cagagcagat taaaaacggt acttataaaa
     3781 tcgatacaaa agctacggct tctgcgattg ctgactcttt aatctaaaac tttcattctc
     3841 ctttttttga gagagaaaag gagaaaatat gcttaaacaa agacttgatg aagtaaatgc
     3901 tatcttagca aaacttattg ctttaaccga agaagatata gaaaatatca aagtggctaa
     3961 acatgagagt gtaacgccaa gtgtagaaga aaaaaacaaa cttatcgccg aatttattac
     4021 agctaaaaaa caacttgatg ttgccttggt tgagctaaat aatagctcta caaaagggct
     4081 tagtgaactc ttagatgatg aagataaaca aaaactagat ctacttaaaa aaaatcttca
     4141 aaaccttcat agtaaaaaca aagagtatgc taaatttgtt cttattgtca aagattttct
     4201 tgatagctta gtaaataaaa tgtttgatat caatgatgga acaaataatg cttatggaga
     4261 taaaaagaca aatccagagt caattttcaa gatcaatgta taaggattta taatgggtat
     4321 ttttggaaca ttatacacag gtgttacagg cttaaaggca agcgaagttc aaatcgcaac
     4381 aactggaaac aatatctcaa atgctaatgc aactttttat acacgccaaa gagtagtgca
     4441 aactacaaat gggtatatta ccacaggtgg agttcaagta ggcacaggaa ctgctataga
     4501 aagtatagtg cgtttgcatg atgagtattc ttactataaa ttaaaaggtg catcaaacca
     4561 actagaatac actaaatata tggcttcaac cttacaagaa atcgctcagc gttttccaga
     4621 cttacaaaat actggaattt tgaaagattt agaaaattat aacaaagctt ggaatgattt
     4681 tgcatctaac cctaatgaaa atgccacaaa aatagccctt gtaaaagctt ctcaaacctt
     4741 aacagaaagc gttaataaca cttttgcaac cttggataaa atccaaaaaa aagtaaatga
     4801 tgatattaaa aatacagttg atgagattaa tagaatcggt gaagaaattg ctactataaa
     4861 taaacaaatt tatggacaag aagccttacc aacagaacac gcaaatgagc ttagggatag
     4921 aagagatgaa cttgaactta ccctttcaaa gctagttagt gcagttgcaa gcaaaaatga
     4981 aatcaatcaa gacaatcgcc ttgatacaac catcactgat ccaggacatc aatacaatct
     5041 aagtatagaa ggttttagta tagtagatgg gataaatttt catcctttaa agcttgatta
     5101 tgatgataaa aataaatctt atagcattta ttatgaaact cctgatgaaa aagttcgcga
     5161 tcttactgca aagattaacg gtggacagct tggtgctcaa cttgacttac gcggtagaaa
     5221 ctatagcaaa agcaaaggaa aatatgaaga tggaattatc caaggttata tggattcttt
     5281 agatactttt gctaagacca tgatcaatga aactaacaat ctttatgcga gttctgcgaa
     5341 aagttctgtt acttctgatt atctatctgg acttaaggga gatattcctt tagttaatta
     5401 cgacagaacc atacaaccag gaagttttga tatagtcatt tatgatgata aaggcgataa
     5461 aaaactcacc aaaaccatca ccatagatgt aaatacaacc atgaatgata tcatgcgtca
     5521 aatcaatgcc aatacagatg ataatgacaa taaaaattca aacgatgatg ttgatgatca
     5581 tatcaatgca agttttagct acgatgcaaa aactggagat ggtttattcc aaatcaatgc
     5641 aaaatcaggc tttaaggtag ccattgaaga taaaggcaca aatttcgcag gtgcgtttag
     5701 cataggtggt tttttcagcg gaactgatgc aagtgatatg aaagtaaaag attctatctt
     5761 aaatgatcca agcacagtaa gagcaagctc aaatggggtt gatagtggca atgacatggc
     5821 aaataaaatc atccaacttc aatatgaaaa agttaatttt tataatgaag atggtactat
     5881 cgataatctt actatggaag aatattaccg caaacttaca ggtaaaatag cctcagatgg
     5941 tgaaaataac aatgttgtaa attcaagcaa tgaaactctt tataattctg tttatagcga
     6001 ataccaatct aaaagtggtg taaatacaaa tgaagaatta gccgctctta tacaatatca
     6061 atcaagttac ggcgcagcag caaaaatcgt ctcaactgta gatcaaatgc ttgatacctt
     6121 actaggactt aaatcttaag ctctagtaat atcaagtgaa aaattttatc catcttaaag
     6181 ccaagcttga ttttttagcc aatcaaaaaa acaccaatca ttcccttttt gaaactccag
     6241 atcctttgca aattgctaaa attcacaatg atgaatttac tgccttaatt tgtgctttat
     6301 ttgcctatgg aaatgctaaa aatatagtaa attttctaaa aaaacttgat ttttctttat
     6361 taaaccttca agaaaaacaa ataaaaaaag aacttaaaaa tttaaaatac cgcttccaaa
     6421 atgagaaaga tatacaagaa atttttatca ctctttcaag actgaaaaat gaaatttcac
     6481 tctacgaact tttttatcaa gcctatgaaa aaagagaaaa taccacagat gccatcttag
     6541 cttttataca aaaaatcaaa accttaaatt catattcaag ttatgggtat gattttttct
     6601 ttggaaaaat ttggcaaaac acccctaatt cacctcttaa acgctataat atgtatctaa
     6661 gatggatggt tagaaaagat gaacttgatc ttggactttt taccaaaatt cacaccaaag
     6721 atcttttaat tccacttgat acacatacac ataaaatttc cttgacctta ggacttctaa
     6781 agcgtaaaat atatgattat aaaagtgttt tagaactcac gcaaaattta aaaaaattag
     6841 atgcaaatga tcccataaaa tatgactttg cactctatcg tttagggcaa agtaaggaaa
     6901 gacaaattta aggagtgaaa aatgggcttt gagcacttag atacaattta ttacttcata
     6961 cttttttttg tagctctttt tgctggtttt atagattcta ttgtaggtgg aggagggctt
     7021 attactctac cagcactcat agcctgtggg attcctgcgc atttatcttt agcaacaaac
     7081 aaactccaaa gcgtctttgg ttcttttacg gctactttaa cttattttaa atccaccact
     7141 ctacctcatc ttgcttgggg tgttttttct acagccttag gagcagctat aggaagctat
     7201 agcgttcttt ttgtaaaaga tgagcaatta aagcttatta tcttaatctt tttaactctt
     7261 actttcttat atacagcctt acgtcctaac ttaggcaaac acgaaagcga acctaaaata
     7321 aaaaatatca aaatttttca tttaatttgt ggcttaactt taggatttta tgatggattt
     7381 ttagggcctg gaacgggttc attttggatt tttgcttgtg tgatgctact aggttttaat
     7441 atgagaaaag caagcattaa tactaaaatt ttaaatttca ctagtaatat cattgctctt
     7501 gctatatttt tatggcaata cgaactttta tgggctgtag gcttgcttat gggcgtagga
     7561 caagttttag gagcttattt aggctcaaaa cttgtattaa aaactaatgg aaagtttata
     7621 aaaactttat ttttaatcgt tgtaggagct actatcatta aagtagcttg ggattatttt
     7681 agttaaaatt gatccctgag ctaagctccc acataggtaa aaatatacct aaagccaaaa
     7741 acaaaactaa aagcgccaca aataaagtca tcataggctc taaaaaaatc aaaaatctat
     7801 ccattaaatt ttcacttttt tgttgataat atttggcaat ttcttcactt aacacttcaa
     7861 gtcttccgct tttcatcgca acactaagca tagaaaatac caaagaatca aaaatatcaa
     7921 tctttttaaa agcctgactt aactcaagac cagaatctat aaaactaaaa agttttttat
     7981 actgaaaaat taaaaattta ttttcaagcc ctataatagc taaatcaaaa gctttagata
     8041 ttgaaattcc attttttaaa agcaaagaaa aaaccataaa aaaataataa ttttgattat
     8101 aaataatcaa acgagaaatc aaaggtattt ttaaaaataa aaaatcgcaa gaaaaagcaa
     8161 aagaatgaaa atttttataa gctaaaataa gcataacaat aaaaacaaca aacaaaaata
     8221 tgcaaaaaat tccatagcta tctaaaaaat tataaatttc taacattaca tgcgtgataa
     8281 aaggcaaact cgtgcctaaa ttttcaaata aatctttaaa attaggcact acaaaaagca
     8341 ttaaaaacaa aaatgctccg ataatactta aaaaaaccaa agtaggatat ctaaaagcct
     8401 ttttcaattg tttttgactc tctaagcttt tttctcgaag tttagaaatt tgactaaaca
     8461 cttcgctgat ttttcctgtc ttttcagccg tttttatcaa agctagctcc gcacgattta
     8521 atccaaaatt agcattttca aaagcttgat ttagattttg ggctaaaatt aaattgtcta
     8581 atattttttt cataatcttg caagaatgca taagatataa ttctctaatc gcttcttgaa
     8641 cacttaatcc aacttcacac aacaaagcca gctctttaaa aaagagtata aaattttcat
     8701 cttttaatct ctgaaaatta gatttttgaa tttcttttat atcaatgatt ttccaattct
     8761 ttgataaggc ttttgcttgt gctgtattta aattttcagc ttttatagtt tttgtataat
     8821 tttgattgtt tttaagaaat tccacttcat aaaatttcat cttacaaccc ttaaaagctc
     8881 atctatactt gtaagacctt ctttggcttt ttttaaacct tgttcaaaca tagtttgaaa
     8941 gccatatttt tttgcaagct ccattaaaat cattttatct tgattttccc taattgcaca
     9001 agataaatct tcattgatct ctaagcactc agcgattaat tctctgccaa aaaatccact
     9061 atgatgacaa cgctcacatc cttttggttc aaaaaattca ccttcaaatt caatataatg
     9121 ttttttgctt ttttgcttac accaaggaca aagttttcta accaaacgct gtgctataac
     9181 aagactcaaa gccgatgcta tcaagtaact ttttgcttgc atatccaaaa gcctatcaat
     9241 ggtgctaaga gcatcattag tatgcaaggt gcttaaaagc aaatgacctg ttaaagaagc
     9301 tttaagtgca atatctaaac tttcttcatc gcgaatttct cctatcatga taatatcagg
     9361 atcttgcctt aaaattgctc ttaaaacact attaaactcg actccaactt ttgaattaag
     9421 caaaatttgc tgcactaaag gaattttata ttctatagga tcttctgcgg agataatctt
     9481 tttttcaata cttttcaact catttaaaca cgcgtataaa gttgtgcttt taccactacc
     9541 tgtaggaccg gttaataaaa tcattccatt gggacgatgt aaaatctttt ttaaaatttc
     9601 taaattttta tttccaagat ttagtttata caaatccaaa atttctttat catgttttaa
     9661 aattcttata acaacacttt cgccataaat caaaggcaaa catgaaacac gaaaatcata
     9721 tctttcattt tcaaaatcta attcaaaact tccatcttgt gtttttcttg attcagctaa
     9781 attcaaacaa gctaaaaatt tgacatgaaa aaccaaagct tcataaatat ccttctcaaa
     9841 aatagcaaat tcacgcaaaa ttccatcaac cctaaaccta atcaaagcat catcattcct
     9901 tgcttctata tgaatatcac tcgcatgaaa agataaaatt tcatgtaata aaaaatcaaa
     9961 aatttgactg atgcaacttt gatcatctct tttgtgattt tcttgccatt caagtctaag
    10021 cttaatgctt aatcttttaa tctcctcttg aatgcgaatt tgatttaaaa ttttagctat
    10081 ctttaattca tcggcaatta cagtgtcgat tttttcacaa atcataaaag tcttaacttg
    10141 ctctaaaagc tctaaagaac aaggtttgga tctaataatc ataaagccgt cattgttttt
    10201 aataagcaga aatttaaatt ttaaaagtaa agaaaaaggt ataccttcat aaataaaatc
    10261 attatcttca tctaaatcaa caaaatgcaa attacaaaaa tttgctaatt ttttaaaaaa
    10321 atcccaagaa gtgatattaa atttagtgca aatttcatca agacttattt cattatcaat
    10381 ataagcttga aaaattttat ccattctact ttccatctaa ttccattaaa ccataataat
    10441 ttatataagc atctaaagca ctttgagctt ctttttcttc gcctaaagct cttttagcct
    10501 gagcaaaaat cagccaagaa tcttgttttt gcttgtcaag ttcattggct tttaaagccc
    10561 aaaatattgt cttttgataa gctttaatat caaaatactt cttagctaaa tttaatgcct
    10621 tttcatagct tggattttga taaaaagatt tttttaaatc agaaatattt aaaattttag
    10681 aatcaatttc tatcttgcta atatgtgtat tttcctgcac cgctttaact tcttctagtt
    10741 ctttatataa cttttcccta gaaatcttat ttttttcttg taaaatttgc gcttgaagaa
    10801 tcttttgctc caaatgcttt ttatgttcaa tagcttgcaa ataaatattt ttttgcttat
    10861 tatatttt
//
LOCUS       DAPIWU010000058        10729 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.058, whole genome shotgun sequence.
ACCESSION   DAPIWU010000058 DAPIWU010000000
VERSION     DAPIWU010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10729
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.058"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            41..736
                     /gene="ung"
                     /locus_tag="RJ285_001162"
     CDS             41..736
                     /gene="ung"
                     /locus_tag="RJ285_001162"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDV7383940.1"
                     /translation="MEEITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQN
                     IVIYPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNI
                     FKELQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHK
                     LSNEKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFL
                     KKVGKIPIDWKIV"
     gene            complement(746..1912)
                     /locus_tag="RJ285_001163"
     CDS             complement(746..1912)
                     /locus_tag="RJ285_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383941.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASEFGFRINEEGFFDKDLNKIANIPESYNINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLSQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYVNGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSNSIENFLDRRQKQANINKILNSYMSVMV"
     gene            2068..2259
                     /gene="rpmI"
                     /locus_tag="RJ285_001164"
     CDS             2068..2259
                     /gene="rpmI"
                     /locus_tag="RJ285_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDV7383942.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRGLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            2353..2706
                     /gene="rplT"
                     /locus_tag="RJ285_001165"
     CDS             2353..2706
                     /gene="rplT"
                     /locus_tag="RJ285_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDV7383943.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(2759..3402)
                     /locus_tag="RJ285_001166"
                     /pseudo
     CDS             complement(2759..3402)
                     /locus_tag="RJ285_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109080.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            complement(3399..3551)
                     /locus_tag="RJ285_001167"
     CDS             complement(3399..3551)
                     /locus_tag="RJ285_001167"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383944.1"
                     /translation="MAIFFYEVENFNDFKPRYLKTFIQKYSDFKYYYLNIRAQKLEIT
                     NEIKIK"
     gene            complement(3755..3886)
                     /locus_tag="RJ285_001168"
                     /pseudo
     CDS             complement(3755..3886)
                     /locus_tag="RJ285_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857339.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
     gene            complement(4065..4430)
                     /locus_tag="RJ285_001169"
     CDS             complement(4065..4430)
                     /locus_tag="RJ285_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383945.1"
                     /translation="MMLFSEDMIENLCTNKIKLFSNIKDYTERKKLIEKEVLSINVPF
                     EAHCINTLHYLIYDGLSQSESSLLELLYKHNPYPCALVGGGSSGNMDFSGTFIFYNGE
                     ILKNQALSLHIQFKPKISF"
     gene            4913..5770
                     /gene="cheP"
                     /locus_tag="RJ285_001170"
     CDS             4913..5770
                     /gene="cheP"
                     /locus_tag="RJ285_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HDV7383946.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANLNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVTADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REEVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLEEAKTQGINFDLNNLLSKLPSK
                     AKENLNKED"
     gene            5798..6277
                     /gene="cheQ"
                     /locus_tag="RJ285_001171"
     CDS             5798..6277
                     /gene="cheQ"
                     /locus_tag="RJ285_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HDV7383947.1"
                     /translation="MMKSLILPPNEFLDHYILNTEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(6246..7556)
                     /locus_tag="RJ285_001172"
     CDS             complement(6246..7556)
                     /locus_tag="RJ285_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7383948.1"
                     /translation="MSKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIIVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGIIKSCVFFSVFFGIASLLYFNTLYRQNTDFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGVYVFFLAIIALLCTFIFSYLNNTQRTYSQ"
     gene            complement(7559..7714)
                     /locus_tag="RJ285_001173"
     CDS             complement(7559..7714)
                     /locus_tag="RJ285_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HDV7383949.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYPQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMD"
     gene            7807..8280
                     /gene="moaC"
                     /locus_tag="RJ285_001174"
     CDS             7807..8280
                     /gene="moaC"
                     /locus_tag="RJ285_001174"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDV7383950.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITSRIATASGMIYMSQEAFDAIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKVETDIMEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            8258..8521
                     /locus_tag="RJ285_001175"
     CDS             8258..8521
                     /locus_tag="RJ285_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HDV7383951.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVRASEIFQEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            8511..9671
                     /locus_tag="RJ285_001176"
     CDS             8511..9671
                     /locus_tag="RJ285_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383952.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGIRLWEKAKKFVKK"
     gene            complement(9691..10449)
                     /gene="xth"
                     /locus_tag="RJ285_001177"
     CDS             complement(9691..10449)
                     /gene="xth"
                     /locus_tag="RJ285_001177"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDV7383953.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEKIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFDSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLNKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            10567..>10729
                     /locus_tag="RJ285_001178"
     CDS             10567..>10729
                     /locus_tag="RJ285_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HDV7383954.1"
                     /translation="MLRLTWFQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFALVHVIC"
BASE COUNT         3851 a         1428 c         1551 g         3899 t
ORIGIN      
        1 tagaataaaa tttttaataa tttaaataat tagggataat atggaagaaa ttacaataaa
       61 catagataag attaaaataa atgatgactg gaaagaattt ttaagagacg aatttcaaaa
      121 aaaatatttt ctagaaatca aaaaacaata cctaaatgcg attaatcaaa atatagttat
      181 ttatccgcct gcaaatttaa tctttaatgc ttttaattta tgtcctttaa aagaaattaa
      241 aattattatc ctaggacaag atccttatca tcaaccaaat caagcaatgg ggcttagttt
      301 ttcggttcca aaaaatgtaa aaatcccacc aagtcttaat aatattttta aagaattgca
      361 aaatgattta aacatcactc cagcaaaaag cggagattta agctcttggg caaaacaagg
      421 agttttgctc ttaaattcta ttcttagcgt tgaagcaaat aaagcagcta gccatagttc
      481 gtggggttgg caagaattta gtgatgctat aatacataaa ttaagtaatg aaaaatcagg
      541 gcttgttttt atgctttggg gaaattacgc aaaaaacaag gagattttga ttgataatac
      601 taagcatttg attttaaaag cagctcaccc aagtccttta gctagaacag gatttttagg
      661 ttgtaagcat ttttcaaagg ctaatgaatt tttaaaaaaa gttggtaaaa ttcctataga
      721 ttggaaaata gtttaaaaaa ttattttaaa ccatcacaga catataagag tttaaaattt
      781 tatttatatt tgcttgtttt tgacgacgat ctaaaaaatt ttctatagag ttagaacgta
      841 gttgatttgc ttcttctaat ctttgcgtat cttgactttg attttgatat tgttttttaa
      901 gagcatcaaa atcattgcga ttttgatcga tataaatttg aaatattgaa cttgaatttg
      961 caaattctct taaatccata tctttttggt agttaatata ttgttgaaaa aatacagata
     1021 gtttgtcttg agtgcttgtt tttttatcta cgccattaac atagagataa agatcaaaac
     1081 tcatcttttt ttcattttct tttttgatgt aatcttctat atctgtttcg cccttgagaa
     1141 ttttttgtaa attttgatga gagcttagtt ctaaagtggc aggtttcata aaaaagttaa
     1201 attctttttc gttttgagtt tttatatcat ggtagataaa attcattaaa agaccagatt
     1261 ttgatacttc tgcattttta gttaaataag gttttaaaat ttcattagaa gaagtatttt
     1321 ctatggcttt atcaaaatga aaattagtta ttttattatc taacattaaa gtatttaaat
     1381 ttgtgatatt gcttaatgcc aaatcaattt cttcttgatt gttgtaaatt cttgaaattt
     1441 ggcttaaaaa ttctccatta tctgttgaaa aacctgatga tagttttgaa ataagatcgc
     1501 gacttaaata agcattatca tcttgtaaaa attctgaatt tatagatttt aatgaactat
     1561 gatagctatt taaaagataa ggtagatcaa ttttattgta gtttaaattt tcatcttgtt
     1621 ttgcgagttc ttttgctatg cttctaacgc ttttaatgtt gatattataa gattctggta
     1681 tatttgcaat tttatttaaa tctttatcaa aaaaaccttc ttcattgatt ctaaatccaa
     1741 attcactagc ataagtggtg ttgttaaaaa tatagcttaa ttgttctaag ctattttcat
     1801 ttccttcttg atccaaagct ttactatctt taatcaaatt tagagcagag ctattctgca
     1861 aaggattaga taaggttaaa ttttgatatg gatttgccga atttatagtc attttaaatc
     1921 tttccaaaat attgctgatt ttttataagc aaaaggtgtg ccaagttttt taaaaattaa
     1981 attcagtcaa aaattagaaa aaatttgata gtatttagct tttcttttaa tttgaaaaat
     2041 aaaaatttat ctaaataagg aaagcgtatg ccaaagatga aaagcgttaa aagcgcagtt
     2101 aaacgcttca aagtaggtaa aaataaaatc aaaagaggct cagcttttag aagtcatatt
     2161 ttgactaaaa aacctgcaaa aagaatgcgt ggtcttcgca cagctaaata tgtgcatagc
     2221 acaaatgtaa aagctgttga aaaaatgcta ggaatttaag tttttgacta aaagtcattc
     2281 aaactcccct ctgagataaa atttcaaggg taagctccaa atttggacgc cactttatga
     2341 aaggaaataa aaatggcaag agtaaaaaca ggtgttgtta gacgccgcag acataaaaaa
     2401 gttttaaaat tagcgcgtgg tttttatagt ggacgccgca aacattttag aaaagcaaaa
     2461 gaacaattag aaagaagtct agtctatgct tatcgtgata gacgccgcaa aaaaagagac
     2521 ttccgtcgtc tttggattgt gcgtatcaat gctgcttgca gactcaatga tttaagttat
     2581 tcaagattta tcaatggtct taaaaaagca ggcattgaac ttgatagaaa aattctagca
     2641 gatttagcta tgaatgatgc tgctgctttt gcaaaaattg cagaggctgc aaaaaaagca
     2701 ctttgatttt ttagtataag aatttcaaga tttttgattc ttgaaattct taattttttc
     2761 agtattgatt taatttagct agaacatctt cataacattt gagttgattt acattttttt
     2821 caaaatcttc gctgacattg cttctttgtt ccaatttatc tgaaatttct ttacctgaat
     2881 ttataagatt tgaaatgatt ttggaaaatt cattagtttt atctcttata aaattcattt
     2941 cttgagtact agaattggaa ctttttgcaa tggattgtat ggtctgaata actaatttga
     3001 tagctccttc catttcacct agacccattt gggtattttc tgaaagtttt ctaacttcat
     3061 cagctacaac tgcaaatcca cgaccaagtt ttccagctct agcagcttct atacttgtat
     3121 ttaaagataa aaggctagtt tgttcagcaa tccctgaaat aagatctaaa atactattta
     3181 attgatctat attttcaaag aagattgtac ttctttttct aaattcattt tttcttcgct
     3241 ttggtaaagg ttgtattcta ggtagttagt gaaattagta aaactttcac taatggttgt
     3301 aagacttctt cttatatttt caagtttttc aaaaatttct ttaaatatgc ttgtattttt
     3361 atcaatttct gatgtatttt gtttgagttg atttaagatt attttatttt aatctcattt
     3421 gtaatttcta gtttttgagc tcttatatta agataatagt atttaaaatc gctgtatttt
     3481 tgtatgaaag tttttaaata tctaggtttg aaatcattaa aattttcaac ttcataaaaa
     3541 aatattgcca ctaaactttt tgcaattccc actccataaa tttctccaaa actagaaaaa
     3601 ccaactatag gaaaatcatt aaaatggatt tgatttaaat gttctttgtt gtgaagcctt
     3661 cttaagatac aatcgttaaa aattgctcct agtgattttg gtttattaag agaaaatttt
     3721 tcataatctt ttttatagct tcaataaaat ttgttttttt aagcaagcat aattcttgag
     3781 cgctttctat atcacaataa ctaaataatg ttttatctgg gttgatttcc ataggggaaa
     3841 taagatagtc ttctccaatt tttaaagcaa aagtatattc ttgcatttta tttttaagtt
     3901 cttcaaaagt gcagttaaaa taattacata aagcttcaac cgcgttgatg gattgaaagg
     3961 tttttttatc aataaattca tgtatggttt tatcatataa acttgcatca agtatggtaa
     4021 aggtgatatt gctttgagga ttaaaatttt gagacttcat taaatcaaaa cgatatttta
     4081 ggtttaaatt gaatatgtaa gcttaaagct tgatttttta atatttctcc attataaaat
     4141 ataaatgttc cgctaaagtc catgtttccg ctagatccac cccctactaa agcacaagga
     4201 tagggattgt gtttgtataa aagttctaaa agagaacttt cgctttgact taaaccatca
     4261 taaattaaat aatgcaaagt atttatgcag tgtgcttcaa aaggtacatt tatagataaa
     4321 acttcttttt ctatcagttt ttttctttct gtataatctt ttatattgct aaaaagcttg
     4381 attttgtttg tgcaaagatt ttctatcata tcttcactaa aaagcatcaa acttattcct
     4441 tggatatttt gtttataagg actgttttca atgtttgagt tagaatcaag gttgcataat
     4501 aaatcagtag cactgcttaa gatgatatca cattgctcat ttatagaatt ttgaatctta
     4561 tttcctatga tcgctagatt aagttgatcg acacaaagcc tataattaat tttggcttga
     4621 tatttatttt ttttaatttt tattcaagtt cattttcttg aagatataga gcttctaaaa
     4681 cttttttact ttcttctttt tttgttgagc ttttattttt aaaattaaaa aacatcaatt
     4741 taactccatt aaaactattt tttaattact agttaactaa atcaagacac cataaattcg
     4801 gcatttattt gtaattttta ttatacctta agtaataaaa aaatgcaata agtaaattaa
     4861 aatttagata taattccaaa ttataataat attaattaag gataaatcaa atatgattgg
     4921 agatatgaat gagcttttat taaaaagcgt tgaagtattg ccacctttac ctgatactgt
     4981 aagtaagtta agaaaatatg tgagcgaggc taatttaaat atagaaacta tgaaagttgc
     5041 tgaaatcatt tcaagcgatc cgttgatgac ggctaagctt ttgcaattag caaattctcc
     5101 ttattatggt tttacaagag aaattacaac cataaatcaa gtgattactt tattaggcgt
     5161 tggtaatatc atcaatatag ttacggctga ttccattaga gataatttta aaatagacgt
     5221 ttcaccttat ggtttaaata ctcaaaattt tttaaaaacg tgcaatgaag aggcaacttt
     5281 tatcgcaaat tggcttaatg atgaagataa aaaactttct catcttttag ttccttgtgc
     5341 aatgctttta aggcttggta ttgttatttt ttcaaatttt cttatacaaa atcataagga
     5401 taaggatttt ttagcttttt taaataaaaa tgaaaatctt gctttagcgg agaatgaatt
     5461 tttaggcgta gatcatattt ctttcttggg atttttgtta catcgttgga attttgatga
     5521 tgttttgatt gaaagtatat gttttgttcg cactcctcat gctgctcgcg aagaagtgaa
     5581 aaaatccgct tatgctttag caataacaga tcatcttttt gctccgcatg atggctcttc
     5641 tccatttaac gcaaaagctg cagttgcttt acttgaagag gcaaaaactc aaggaattaa
     5701 ttttgattta aacaatcttt tatctaagct tcctagcaaa gctaaggaaa atttaaacaa
     5761 agaagattaa agagcctttt taaggctcta aattgtagtg atgaaaagtt taatcttacc
     5821 tcctaatgaa tttttagatc actatatttt aaacaccgaa tttcatcgtt ttgctggaat
     5881 ttcaaaaaat gcttataaat tttggaaaaa tgtagaaata ggtagatatc aaggaacaag
     5941 aattatattt ttgcatagaa attgcatttt agaaaaacat cagcaagctt taaggcaatg
     6001 tagtggttta aatggttttg tattggcaag tgctttttgt tcttttactg gattagcccc
     6061 ctctcattta gtggaaaaaa ataattcttc tatttataaa cttttagagc ttaaggaaat
     6121 ttgtgggatt aaatttgtta atctaaaaaa attttatgat tttttagggc taaattatca
     6181 tcagcatatt tatatagaaa aatgccattt ttttagccca gctccttttg aaaagcgtat
     6241 taaaatcact gagagtatgt gcgttgggta ttattaagat aagaaaaaat aaatgtacat
     6301 agcaaagcta taatagccaa aaagaaaaca taaactccca aagaaaaacg ccaaaaatta
     6361 cttaaattat ttaaggcaaa actatgcaag aaaaaagcaa gttgcggagt taaacctcca
     6421 gctatagcat aagcaatatt atatgaaaag gaaagtcctg aaaatttaat ttttgcatca
     6481 aatacttcac tcattattaa agggcaaaaa ttcatcactc cgctaaaaaa acatacaagt
     6541 aaatataagc aagctactag gttaaaatca gtattttgtc tatatagagt attaaaataa
     6601 agcaagctcg caattccaaa aaaaacacta aaaaatacac aagatttgat aatgcctatt
     6661 ttatccgcta aaattccact tataatacac cctaggcaaa taagtaaaat tccacctatt
     6721 tgaagatagg tttgtataga agtgttaatt tgaagtattt ttgccatata gctaggcata
     6781 agcaaaatca ttacaataat acaacctgtc aaaacccaag taatcatcat agaaagaaca
     6841 attcccattt tagctttttt aaacacttct tttaaaggaa atttttctaa agccttgtct
     6901 tttttcattt gttcaaaaac aggagtttct cttaaaaatt ttctcaaata agcagaaata
     6961 atcccaaaaa ttccacctaa aaagaatgga attctccaag cccattcatg aagttcttct
     7021 tgggtataaa ttttattcat aattaaaaaa actaaactac ctaataaaat tccacctaca
     7081 accgaagcgg ttaaaattcc caaataagtt cttttttgac cttgtggtgc gtgttcgtat
     7141 acaaaaaccc aagctccagg aagttcccca cctatagcta taccttgaca aatgcgtata
     7201 aaaactaaaa gcacaataca aagaaaacct atgctttcat aatttggaat aaaagctaga
     7261 gtaaaagttg gaataaccat taacaaaata ctaatcataa acattctttt gcgtccaaat
     7321 ttatctccaa aatgtgccag tatcacaccc cctaagggac gcgctaaata tccagccgca
     7381 aatattccat aagtattaaa catttgccaa aaactactta aatcttttgg aaaaaagttt
     7441 gttgaaatat aatttgcaaa aaatacaaaa ataataaaat cataaaattc taaagttcca
     7501 cctaatgatg aaagtcctaa aacttttata tctttttggt taagggtttt gctcattctt
     7561 aatccatctc ataaaaatca tcatcattgt tatcatcatc gtattcataa tcatcatcat
     7621 cgtaattata atttttatga tgattttgtg gatattcttc atcttcgttt tcataatcat
     7681 cgtaatttaa atcttcttca tcttcataag ccattgtttt ctccttaaat aaaaatacaa
     7741 agcttatttt atcttaaatt tgtttggttt tgctataatt tttataattt tttaaaaggt
     7801 gaatttatga aattaagtca tttagatgaa aaaaatcatc ctaaaatggt agatgtaagc
     7861 gataaaaata ttacttcaag aatagccaca gctagtggta tgatatatat gagtcaagaa
     7921 gcttttgatg caattaaaaa caataccgca aaaaaaggtc ctgttcttca aacagctatt
     7981 attgcggcta taatgggagc taaaaaaaca agtgaaatta ttcctatgtg tcatcctttg
     8041 atgctttcta aagtcgaaac tgatattatg gaatttgtta aagaatgtgc atttaagctt
     8101 attgtaacag ttaagtgtga aggtaaaaca ggggttgaaa tggaagcttt aagtggagtt
     8161 agtataggac ttttaactat atatgatatg atcaaggcta tagataaatc aatgaggatt
     8221 acggatatag tgcttgaaag caaagaagga ggtaaaagtg gtaaatttgt gcgatcttaa
     8281 aaaagaacct cagatcaatt atcctacttt ttgggattat aaggtgattt ttgaggtgca
     8341 tgttagggca agtgaaattt ttcaagaaat tttaggccaa agagaatata aatttgaaca
     8401 ttcgaattca agtgcgagtg gaaaatatca aagttattta ttaaatgttt atgttgatag
     8461 caaaaaagat cgtttggata tatttgataa attaaaagct aaagcaaaat ttgtacttta
     8521 agaaagaagg aaaaatgaaa aatactttaa ttatttttga aaattcttta tcaaatctcg
     8581 gtaaagatga agcaagtgat ttgcttgaag acttgagttt taatcttgcg tataagcaaa
     8641 tttcacataa tcctcatgaa acaaaaaaag ttttaaattc tcttttggtt gaatttttaa
     8701 ctattttgaa aaaacttgat ttttttgatg atgaaaatgt tacaaaggtt atcaaagctt
     8761 tggttaaggc gagtattgta gatgctcaaa attcgcttta tgagtatatt agcgaagctg
     8821 aattattaaa taagcagatt gaaaatcaaa agaatttgat taaaaatcaa atcagtgata
     8881 atttttttga attcgagaat attttacaag aatgttcttt ttgtgatgaa tttagcggtg
     8941 gtttaaatga tgctatttta tttgatatag aaatgcttgg aattttaaaa gaaaccgctg
     9001 aaagtgcttt tttaactaca ttagaaaagg ctgaagatat agaacttaca agtagtgaaa
     9061 tagctaaaaa tctcgtatat aatgccattt gtgaagctca ttttgaaaaa gaaagaattt
     9121 taaaaatttc aagtattatt ttaaataccg cttttgaaat agctaatgaa tctatggctt
     9181 atgcaaaaga tctttgttta ggcgtgatta aaggcacaag agatggtatt gttttagcaa
     9241 tggaaaaatt taaagcttca ttaacttatg caaattttga agaagatgtt agtttaaaaa
     9301 gcaaagaact aataggtata gaagatgatt ttattgctct tttgaaaaaa gagattcaac
     9361 tacaaaatga tccttgtaag agtatagttg agaatttgct agaacatgaa cttgataatc
     9421 tttttgctaa atttagacgt cttgcaggtg aaagcagaga gcagctaata ttagttttaa
     9481 atgatattaa gaaaaatcca aagattaatg attttaacaa acttactcaa agaaaattaa
     9541 atcgttttaa acaagaaatt tttgaattag aaaaaattgc tagcgaaaaa tacaaagatt
     9601 taaattccaa aaaagctaaa aagctcggta taagactttg ggaaaaagca aaaaaatttg
     9661 ttaaaaaata atatcccatt ttttgggata ttaaatatct atttctatac ctacaggtgc
     9721 gtgatcagag ccaaaaatat catctcttat gaaagcgttt ttaagtttat cttttaaacc
     9781 ctttgaaatg aaaaaataat caatcctcca gcctacattt ctttctcttg ctttcattct
     9841 atagctccac cacgagtatt tttctttgat ttcaccatta atttctctaa aagtatctat
     9901 aaaaccaagt tttagcaaat catcaatcca agctctttct ataggtaaaa aacctgaagt
     9961 gttggcattg gcttttgggt gggtaagatc gatttcttta tgagcggtgt tgacatcacc
    10021 acaaatgata atttcaaatc catcttttaa aagcttattt aaatacacta aaaaatctgc
    10081 ataaaatttc attttaaaat ttaaacgctc ttcatctttt tgaccatttg gaaaatagat
    10141 attaaaaagc gcgatatttt taaagcggtg ttccaaaacc ctgccttctt catcatcaaa
    10201 aaattcacat ttttttactt cgctatcaaa attacaaaga ctcattaccc cagaataccc
    10261 tgctctttta gcagaattaa aatacatgtg tttaaaagga tattcataaa tttttttagg
    10321 aaatttatct tcatgtgctt tgatttcttg aaaacctata aaatcaattt tttcttgtgc
    10381 tatccaatca agtgcatttt tatcacaaat agctcttaag ccattgacat tccatgaaag
    10441 tagtttcatt attttcctta aaattttcat taaaagtgta aatcataaca taaaaagatt
    10501 taaaactaca atccatttaa aaaaattcaa taaaattaaa agcttaaatt tgaaggtggg
    10561 atttatatgc ttagattaac ttggtttcag tttacttttt ttaattcttt gatgattgta
    10621 ttgttgaatt ttaatttatt ttattttgtg tatgaaaaaa atacacaaaa ttggtttata
    10681 acttttgttt ttattgtggc ctattttgca cttgttcacg tgatttgct
//
LOCUS       DAPIWU010000059        10565 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.059, whole genome shotgun sequence.
ACCESSION   DAPIWU010000059 DAPIWU010000000
VERSION     DAPIWU010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10565
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.059"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            222..297
                     /locus_tag="RJ285_001179"
     tRNA            222..297
                     /locus_tag="RJ285_001179"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:255..257,aa:Ala,seq:ggc)
     gene            301..376
                     /locus_tag="RJ285_001180"
     tRNA            301..376
                     /locus_tag="RJ285_001180"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:334..336,aa:Val,seq:gac)
     gene            404..934
                     /locus_tag="RJ285_001181"
     CDS             404..934
                     /locus_tag="RJ285_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7383955.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     KAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(914..1516)
                     /gene="leuD"
                     /locus_tag="RJ285_001182"
     CDS             complement(914..1516)
                     /gene="leuD"
                     /locus_tag="RJ285_001182"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDV7383956.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(1518..2930)
                     /gene="leuC"
                     /locus_tag="RJ285_001183"
     CDS             complement(1518..2930)
                     /gene="leuC"
                     /locus_tag="RJ285_001183"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDV7383957.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIKNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(2917..3993)
                     /gene="leuB"
                     /locus_tag="RJ285_001184"
     CDS             complement(2917..3993)
                     /gene="leuB"
                     /locus_tag="RJ285_001184"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDV7383958.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFISQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERITHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENNNG"
     gene            complement(3990..5525)
                     /gene="leuA"
                     /locus_tag="RJ285_001185"
     CDS             complement(3990..5525)
                     /gene="leuA"
                     /locus_tag="RJ285_001185"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDV7383959.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTLIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQIYEIISPSAIGIHDNRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENE
                     FVIEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPVLKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            5845..6474
                     /locus_tag="RJ285_001186"
     CDS             5845..6474
                     /locus_tag="RJ285_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383960.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(6510..7154)
                     /locus_tag="RJ285_001187"
     CDS             complement(6510..7154)
                     /locus_tag="RJ285_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDV7383961.1"
                     /translation="MNKKLLSIIASTTLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
     gene            complement(7292..7675)
                     /gene="queF"
                     /locus_tag="RJ285_001188"
     CDS             complement(7292..7675)
                     /gene="queF"
                     /locus_tag="RJ285_001188"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDV7383962.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            complement(7921..10455)
                     /gene="flgE"
                     /locus_tag="RJ285_001189"
     CDS             complement(7921..10455)
                     /gene="flgE"
                     /locus_tag="RJ285_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDV7383963.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNAVEVTEKGVDAGSLFNANGQGLNLREGQGIWVSYADAKFTTDKPANVNVFD
                     PNNHTNQNGSIFWGDKDNAVILDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDG
                     TGVKAVKKADGSGIEFVNDNADGTTDNMKNINLTVNQANTAGERHAITWNAGNNNFTA
                     TSAKNNANSVWIPTAANVNGNAESIQIITAHKYIYSSTPVDIPPMYNPDDGPNFIANG
                     NQRPTDPASANYWDAIQGSLKNATERTFRTTEDLRELLQRDARYGVDYDGNGSSGYDA
                     NDINQAVKVVVTENGNFAISNANETSTIPANAGAGAGAATTNPKNMSFNITAYSNKQG
                     TVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVK
                     QSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLANYTPKTINFSP
                     NNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNI
                     LGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTGGRGEMKT
                     SALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
BASE COUNT         3448 a         2014 c         1460 g         3643 t
ORIGIN      
        1 tttggttttg accaaatatt tttattattc tagacaactt gaacttaaca aaaaaagaga
       61 tattttagaa ttaatcaaat agtaaaatta ctctcattaa ttctctaatt tttcataaaa
      121 aataaatctt tttatacata tattacatca taaattaaaa atttgatttt agttttcagc
      181 caaaaacaag taatattgcg ataaaatctc agacttataa aggggcatta gctcagctgg
      241 gagagcacaa cgctggcagc gttggggtca gcggttcgaa cccgctatgc tccaccatat
      301 ggttccgtag ctcagctggt agagcactac cttgacatgg tagtggccgt tggttcaagt
      361 ccaatcggag ccaccatcac ccttccttat acaaaggatt atcatgcaaa acactatcat
      421 acaaaaagcc gtcaataaag atttaaattc tatacttgaa atcacaaaag atgctttaaa
      481 tgctatgaaa actatgaatt ttcaccaatg ggatgagaat tatcccaatg aaatagtttt
      541 tcaagaagat atacaagcac aagaacttta tgtgtttaaa gaaaatgatg aaattttagg
      601 ctttatctgt atcaatgaaa aatttgaacc tgaattttac aaacaagtta tttttaacaa
      661 aaattatgat gataaagcct tttatctaca ccgtttagct gtcaaacaaa aggcaaaagg
      721 caaaggcgtg gcacaaaaac ttttaaattt ttgcgaaaat tttgccttgg aaaatcacaa
      781 ggcaagttta agagcagata ctcatagtaa aaattttcct atgaattcgc tttttaaaaa
      841 gcttgatttt aatttttgtg gaaactttga catacctaat taccaagatc cttttttagc
      901 ttatgaaaaa attctaaacc aaaaagcttt ttgagttttt ttcataggct ttgatttgtg
      961 cttcatgttt taaagttaaa gctatattat caagcccttc caaaagacaa attctgtgaa
     1021 aatcatctaa atcaaaagaa aaaatcttat ctttaaaaaa tactcttttt tccaacaaag
     1081 aaatttctat atttttatct tgggattttt ttaactcatc aactatttcc aaaacctcat
     1141 ctttagcaag ttctatagtg agcaaaccgt ttcctaaggc attgttttta aaaatatccg
     1201 caaaagaagg tgcgataata gctctaatac cataatcaac caaagcccaa ggcgcatgct
     1261 ctcttgaaga gccactacca aaattttcaa aactcaccaa aatagagcta ttttgatatt
     1321 cttttttatt gagattaaaa tccatattta aaacactttc tttatcatct aaataacgca
     1381 aatcatggaa caaatgcttg ccaaaacctt gcttagacac tgcaagtaaa aattgcttag
     1441 gtataatttg atctgtgtct atattggcat attctaaagg acaagctata cctttatgta
     1501 taataaattt ttgcatatta aactcctaaa tactttctat tatcacaaat aacaccttct
     1561 atggcacaag ctgccgcact tgcaggactc atcaaatgag tgatagaacc tttaccttgt
     1621 ctgcctacaa agttacgatt tgaagttgaa gcaactcttt gacctgaatt tgctttgtca
     1681 tcattcatac caagacacat agaacaccct gcatatctcc actcacaccc tgcctcgata
     1741 aaaatcttat cgagtcctaa attttcagct tcttttctta cttgcattga accaggcacg
     1801 attaaagctt taacattttt atgaattttg cgccctttta agatatcagc ggctatttta
     1861 agatcttcta aacgcccatt tgtgcaagat cctataaata caatgtcgat ttttacccct
     1921 tctataactt gatcttgctc taaatttaca taagataaag catcaagcaa agatttttgc
     1981 tcactttgat ttttaaaatc acttattttt ggaatttttt catctatacc aatcacttgc
     2041 gaagggtttg ttccatagct aatttgtggt tttatcttgc ttacatctag agtaatactc
     2101 tcatcatatt ttgctccttc atcgcttctt aaactcttcc aatactcgca atacttttga
     2161 aattcttctc ctttaggtgc aaattccttt cccttaatat actcaaaagt gatctcatca
     2221 ggagctatca tacctacttt agctccaaat tctatagcca tattacaaag agtcattcta
     2281 gcttccatgc ttaaattttt tataagttct ccacaaaatt ctatagcata acctgtgcct
     2341 tttgctgtgc cgtattgtgc gatcaaatac aaaatcaaat ccttagcata aacgcctttt
     2401 tgaaactgcc ctttacattc gattttcata gttttaagtt tggcttgttt taaagtttgc
     2461 gttgccatga catgctctac ttcactcgtg cctataccaa aggctaaagc tccaaaagcc
     2521 ccatgtgttg ccgtatgaga atccccacaa actaaagtaa ccccaggtaa agtaaagcca
     2581 agctcaggac ctactatatg aactatgcct tgatttttat ctccaagtcc taaaagcctt
     2641 actccaaatt ccttagtatt ttgcatcaaa gttgtaattt gctcttttgc catatcagaa
     2701 caagcattta aatccacgct tttagttgaa acatcatgat ctatggtagc caaagttaaa
     2761 tccgctcttg ccattctacg cttagccatt ttaagccctg aaaatgcttg agggcttgtt
     2821 acttcatgga ttaaatgtct atcgatataa agtataggaa gttcgttttt gccttcataa
     2881 accacatgag catcaaagac tttctcatat aaagttttag ccattattat tctcctttaa
     2941 aatttctaaa atacaatccc ccatttcatc agtatttaaa tacgacttag catttaaatc
     3001 cttagtcatt tttccttgtg ccaatgccaa agatatagca ttttctatat cctgtgcggc
     3061 ttgttcttct ttgaaactat actttaacat caaagccgca cttaaaattt gagctatggg
     3121 attagctata tttaaatgag ctatatcagg tgcacttcca cctgctggct cataaagtcc
     3181 aaaaccttta tcgtttaaac ttgctgaact taacaaaccc aaagatccat taatggcagc
     3241 taactcatcg ctcaaaatat caccaaaaag atttgaacaa agcataacat caaaaatgct
     3301 aggatttttt acaatctgca tcgcagcatt atccacatac atgtactcta agtttatatc
     3361 ttgataatct tttgcaacat ttgccaccac ttctcgccac aaaatagaac ttgctaaaac
     3421 atttgctttg tcgattaaat gcactttttt ctttcttatt cttgcacttt caaaagcgat
     3481 atgagttatc ctttctatct cttttttagt gtaaatttca gtatcatacg cactttcttt
     3541 gcctaaatct tgcttaccaa aataaatccc acctgtaagc tctctaacac ataaaatatc
     3601 cactcctttt tggataatct cattttttaa aggtgaagca tgagttaaac tttcataaat
     3661 tttacaagga cgcaaatttg caaacaaatt aaaatgcttt cttaaaggca aaagcgaggc
     3721 tctttcaggt ctttgatcta tgggcaaatt atcccattta ggcccaccca cagaaccaaa
     3781 taaaatcgca tcactttgct cacaaagctt taaagtttca tcacttaaag ccactccata
     3841 agcatctata cttgcaccgc ctattttagc ttcattaaat tcaaaactaa aattgtattt
     3901 ttgtgagata aaagttaaaa tttttaaagc ctctttcatt accaaaggcc ctataccatc
     3961 tcctgctaag acagctactt tataagtttt catgccattt tcctttcttc tacttttaaa
     4021 gagcgataaa tcgcattgta agcactcaca aaagcttgtg ctgaagcttc tataacatct
     4081 gttgaaagtc cttttccatg gaattttctc cctttaaatt ccaaatccac atccacttgc
     4141 ccttgagcat ctactcctga actttttgca ttgatactat aagcttttaa cacaggcttt
     4201 aaatttgtta tcctagcaat gcagttaaaa actgcttcaa caggaccatt tcctgtgcaa
     4261 gcttcagttt ttaactcttc tttaatacgc atacaaacac aagcagttgg gatattgcca
     4321 ctaatcacgc ttaatttttc aatcacaaat tcattttctt cttcattttc atagcttaaa
     4381 aacatcaaag cttccaaatc ataatcatat acttgaccct ttttatccgc aaggcgtaaa
     4441 aaacgctcat aaacatcatc taaattataa gtattttcat catagcctaa attttcaagg
     4501 caagttttta tcatagccct tccacttctt gccgtcatta acatacgatt gtcatgaatt
     4561 cctatggcac tagggcttat gatctcgtaa atttgcctat ttttaagcac tccatcttga
     4621 tgaatgcctg aactatgaga aaacgcattg ctacccacta tagctttatg cgaaggtatg
     4681 ctttcattag tgatagctga aactaatttt gaagttttaa agatattttc acatttaata
     4741 tcagtataaa aaccttttaa ataatctttc ctagttttta tcgccataac cacttcttct
     4801 aaagcacaat tgcccgccct ttcgccaagt ccatttatag tgcactctat ctgtcttgca
     4861 ccttgtaaaa tagcacttaa gctattgccc gttgccatac ctaagtcatt gtgacaatgc
     4921 acagaaatga tagctttgtc tatatttggc actttgttaa ataaaatttt gatgatatta
     4981 gcaaattcac ttggcaaggt atagcctacg gtatctggga tatttatagt tttagcgcct
     5041 gcttttatcg cattttccac cataaaacaa agattatcta tcagagttct tcctgcatct
     5101 tcgcatgaga attctacatc atcagtataa gatcttgctc ttataatcgc tctttttgcc
     5161 atagacaaaa tttcatcaaa atcttttttt aatttatctt gcatatgcaa agtcgaagtg
     5221 gctataaaag tatgaattct aaaatgcttt gccactttta aagcttcata agccatatct
     5281 atatctttat ccaatgctct agaaagtgca caaatagttg agtttttaac cttagaagcg
     5341 atcttttgca ccgctttaaa atccccttgt gaagataccg gaaaacctgc ttctataacg
     5401 tctacgccta aattttcaag cgctaaagcg atttgtaatt tttgattgat acccaaagaa
     5461 ctgcctaaag cttgttctcc atctcgcaaa gtggtatcaa agattatgat tttattatct
     5521 ttcatgattt aatcctttaa aaccaaacag actgaatgaa ttaaaaattc aaaaacttaa
     5581 caacaatgat aaaaaattaa aaatgtaaaa aatgattaaa aataaaattg agttttagag
     5641 tgagagttgc agtagcagat taaaagtatt gtctttactt ttttgttgga ctgaatttga
     5701 aatttcaaaa atttgtttca tcttttcctc ctttgttaaa attaatactt aatgtatcat
     5761 atttttagta aatgtgtttg taaaattctt aaattaagaa aattattgat ataattgtaa
     5821 ttttaagtaa caaaaaggaa gttgatgtta aaagaactct tagagattaa aaaagaaatg
     5881 gaacctgtta tccacgaagc caatgtgaaa ttaaatgtcc tagctcgtga agtcatagtc
     5941 cgaaaaaaag aatacgaaat ttatgggcct atggtagatc gtgtttatct tgataatgcc
     6001 atttatgtta aagttatgtc aagtggacgc gatgtaaaaa cagacaatgt gactataaaa
     6061 aatggttttt atatggtttt tgttgcccct gaaaaagaaa gtacaaaaga tatcaaaaat
     6121 aaactcaaag tagcttatga aggacttgat aacaaattta tcgctacact tatacgatct
     6181 tgccaacgct ttaaagagat cataaacaaa acccaagcta cacttgctaa agcttctaaa
     6241 atgaatgtag tagtaaaaac gaatttaggt gaagcaagtg ctgctctaaa atttaacatc
     6301 actatagaat atactaaaga gaatcaaaaa ctcactcgtg aaaattcaaa atcagcagga
     6361 agtttcagag atactaaaac ttatatcaat cttgtagtag aaaaaaatac agattctcaa
     6421 atttgtgaaa aactacttga tgatgttgaa aaatacttta tcggtggagg ttgatttcat
     6481 taatgcaagt tataaaaact tgcattagat taaaatttat aattatatcc taaatataca
     6541 ccataatttg tttgtttagg atcgtaaaag tttgaaccca ctttattttg ataaaaattt
     6601 ctagaattat aatgaatttg ctctgcttta aagcctaatt ctatttcatt atgtggtgtc
     6661 aaatcatata aagcacctat tttcgctcca taaaaataac cgtcaaaatt ttgcgacaaa
     6721 gataaaaagc ttgtttttaa ggtaagatct gttcttgcat atcctccata cacacctaaa
     6781 acagctctgg ttttttcaaa aagcttagga gtaaaatcat aacctgttaa aaatttatgt
     6841 gtagtaaaat caccttcgat ttgaatttta ggagttttga taaaatcact aaattcatca
     6901 gaataattat aaccagcata aattctatga ttttcattta aacgatatcc aagttttaga
     6961 ccaaacgatg gtatattacc tgaaatatct ccattaaaat tttgctttgt attcttatgt
     7021 tttaactcac tttttacttg agcatgcatc caagctgcat cagcacctat aaaaaaacca
     7081 gaattctcat ctgctaaagc caaatttgaa aacaaagtag tacttgcgat aatgcttaat
     7141 aattttttat tcataaccta actccttata ataaaattcg atctaaaaaa tttagatctt
     7201 tttatattat atattcttca aagattaaat aagaattttt gataaaatac ttaatctttg
     7261 cataaaaata tgttaatatt ttactcaaat attattttgg cactaccata tcgctacgac
     7321 attctatcac cgtatgtaca tttccacgcg ggttaaaatc ccccacaact ttaatccatt
     7381 ttggttttaa tttatctttt aaagtattgt aaatttcatt gatacttgct tcatgtgaaa
     7441 catttctata cataaaagta ttgatataaa gttttatcgc cttaagctca accacaaatt
     7501 tatcaggcat atactcaaga taaatcgtcg caaagtcagg ataacccgaa cgcggacaac
     7561 aacacataaa ttcaggtaaa gtgattttaa tgatatagtc atttttcgca tcatttggcc
     7621 aaatttccat attttctaca tcaaattctt tgatttcttt ttcaccataa cgcatagatt
     7681 ttccttaaat ttaaattcaa gcaaaaatta taacaaaata agtttttaaa acgattatga
     7741 tacagataag aaaatgcaat tttattgcaa ctcaccccta gcaagagtga gttagcaata
     7801 aattgaaggc agttcaagcc taagcctagt attacaagac taccaagata ggcttgtaaa
     7861 gcaaggcttg ctcccttaaa gggagcaaaa aacaatattt tatagaatac taagcttaaa
     7921 ttattgttta agctggatta gagtttgaag catttgatca ctcgttgaaa tggtttttga
     7981 atttgcttga taacctcttt gaatgataat aagctctgtt aaagaacgac ttaaatccac
     8041 atttgacatt tcaagagctg aggttttcat ttcaccacga cctcctgttc ctgcttcgcc
     8101 tactacgata ttaccactat ttgcagtgac tttaaaaaga tttccaccaa tttcctcaag
     8161 acctgagtta tttgccactg aagccattgc tatttttgct acagcaaagg ttttgccatt
     8221 agtaaattca cctaagatat tacctttgtc atccacacgg atagcatcag gttttaagtt
     8281 acctgaagta taaccatcag ttgcctgtcc tgttagagtt gaagcagaat ttgagcttac
     8341 aaggccatca ttgcttccac ttgttccaaa ggaaagtttg atttgttgat ttggtgcagc
     8401 accgttattt ggtgaaaaat ttatcgtttt tggtgtataa ttagctaaag atccatcatt
     8461 attaaatctt gctgttccta cgatgatatt tgtaggacct tcacctgtag tgttaatctc
     8521 tgcaggttct ggtacacgga tgatcatttg ccattcatta cccccatctt gagtggtgct
     8581 ttgcttaaca aactgcactt ctaaagtgtg ttttgaacct aaggaatcgt aaatttcaag
     8641 tcctgctgaa aaagcagaaa gcttaagttg ttcgctttct ttgatctgac ctccgactgt
     8701 taaaactccg tcaaaagctt taaaaatttt agtaaaggca tcattggtac ttacagttcc
     8761 ttgtttatta ctataagcag ttatattaaa actcatattt tttggatttg ttgtagcagc
     8821 accagcacca gcaccagcat tagctggtat agtagaagtt tcatttgcgt tagaaatagc
     8881 aaaattacca ttttcagtta ccactacttt tacagcttga ttgatatcat tagcatcata
     8941 tcctgaactt ccatttccat catagtctac tccatatcta gcatctcttt gcaaaagctc
     9001 tcttaaatct tctgtggttc taaaagttct ttcagtagca ttttttaaac ttccttgtat
     9061 agcatcccaa taattagcag aagcaggatc tgtaggtctt tgattaccat tagcaataaa
     9121 atttggacca tcatctggat tatacatagg aggaatatca actggggtag agctataaat
     9181 atatttatga gccgttatta tttgtatgct ctctgcgtta ccattcacat tagctgctgt
     9241 tggaatccat acagagttag cattgttttt agcacttgtt gctgtaaaat tattatttcc
     9301 ggcattccaa gtgattgcat gtctttcccc tgcagtatta gcttgattaa cagttaaatt
     9361 aatatttttc atattgtcag tagtaccatc ggcattatcg ttgacaaatt ctatacctga
     9421 accatctgct ttttttacag ctttaactcc tgttccatct cttgtatccg ttggtgcagt
     9481 aaaggtattg atataagcta tagcttcatc taaacttcta atatttgcat tttgtatatt
     9541 tacaccattt aaggtaatat ccaaaattac agcattatct ttatcacccc aaaaaataga
     9601 tccattttga ttagtatggt tattaggatc aaaaacatta acattagctg gcttatctgt
     9661 agtaaatttt gcatccgcat aagacaccca aattccttga ccttctctta aatttaaacc
     9721 ctgtccatta gcattaaaaa gtgatcccgc atccacaccc ttttccgtca cttctacagc
     9781 attcttagaa gtcgtgtaaa actgagtagt tcctgtatca ttttcatctt ctgctctttg
     9841 ggttttagta ttccatccat gaacagaatc aagtgcataa agatttctac ttgaagttcc
     9901 tatatttaaa ccgctattta aattcgcttt gatggctact tctgtggatt ttgctgcagg
     9961 gatatgcata cctggatcga taaaaatatt ttgtggagtt cttgaactat ctatagtttg
    10021 atcatcccag ttgatattcc acccttgaac tacaaagccg gcattattga caaaatttcc
    10081 ataagcatca agtttaaaat ccccgctcct tgtaagatag tttgtaagcc ccccatcatc
    10141 actcaccata aaaaaaccat caccatttat agccacatca gtgtttttat ctgtggtttg
    10201 aactgaacct tgagaatgaa ttctagttgt agaacttact gaaacgccaa gaccaatttg
    10261 aagtggatta gatccacctc ttccatcagt tggagctgta gcgattttca cagtttggct
    10321 aaacatagtc ccaaaatctg cacgggagta tttaaaacca gtggtattaa catttgaaat
    10381 gttattacct tcaacatcca tcgcaacttg atgtgcttgt agtccgctta cgccagacca
    10441 aagtgatctc atcatcttaa atcctttata aaatattgct ttaaaaaatt taacgctttg
    10501 gctttaaaaa acttttgcgt ttatgtgaag tttacaagca agttctgttc caacttttga
    10561 aattt
//
LOCUS       DAPIWU010000060        10451 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.060, whole genome shotgun sequence.
ACCESSION   DAPIWU010000060 DAPIWU010000000
VERSION     DAPIWU010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10451
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.060"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(131..631)
                     /locus_tag="RJ285_001190"
     CDS             complement(131..631)
                     /locus_tag="RJ285_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383964.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATAITMGETIDNTGIYNSTMD
                     FKNLFK"
     gene            complement(687..1286)
                     /locus_tag="RJ285_001191"
     CDS             complement(687..1286)
                     /locus_tag="RJ285_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HDV7383965.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYALESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIHSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            complement(1286..2176)
                     /locus_tag="RJ285_001192"
     CDS             complement(1286..2176)
                     /locus_tag="RJ285_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDV7383966.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKDIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            complement(2179..2901)
                     /locus_tag="RJ285_001193"
     CDS             complement(2179..2901)
                     /locus_tag="RJ285_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7383967.1"
                     /translation="MVVKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNISEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            complement(2902..4011)
                     /locus_tag="RJ285_001194"
     CDS             complement(2902..4011)
                     /locus_tag="RJ285_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7383968.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALVVAMPLIVAISDAISII
                     GGMMIAKLNLDISFVEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            complement(4013..5911)
                     /gene="tkt"
                     /locus_tag="RJ285_001195"
     CDS             complement(4013..5911)
                     /gene="tkt"
                     /locus_tag="RJ285_001195"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDV7383969.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNDISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFLLSRQKLRALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESTNELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            complement(5921..6766)
                     /locus_tag="RJ285_001196"
     CDS             complement(5921..6766)
                     /locus_tag="RJ285_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HDV7383970.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPKLLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            complement(6763..7857)
                     /locus_tag="RJ285_001197"
     CDS             complement(6763..7857)
                     /locus_tag="RJ285_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HDV7383971.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNTKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVIRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            complement(7854..8165)
                     /locus_tag="RJ285_001198"
     CDS             complement(7854..8165)
                     /locus_tag="RJ285_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDV7383972.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            complement(8169..9452)
                     /locus_tag="RJ285_001199"
     CDS             complement(8169..9452)
                     /locus_tag="RJ285_001199"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDV7383973.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            complement(9436..9987)
                     /locus_tag="RJ285_001200"
     CDS             complement(9436..9987)
                     /locus_tag="RJ285_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDV7383974.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLMGFKSEIKT"
     gene            complement(9974..10246)
                     /locus_tag="RJ285_001201"
     CDS             complement(9974..10246)
                     /locus_tag="RJ285_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HDV7383975.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
BASE COUNT         3321 a         1772 c         1491 g         3867 t
ORIGIN      
        1 gatctctttt gggttaggct atttccctcc cctttttatt cgtagcctaa ctctctttta
       61 agagtttgga aaatctcttt aagctaaaat atattatatt ttcttaaaga gaacaaacga
      121 ttactatttc ttatttaaat aaatttttaa aatccattgt agagttataa attccagtat
      181 tatctatagt ttcgcccatg gtgattgcgg ttgctaactc tgatagaatg atttttattt
      241 catctctttt atcttgtata taggccaata caccttcgta attacttgtt tgaagaatta
      301 aaagtggatt agcaatttca aattcaaaaa gttttttacc aacataaaca ttgaaaatat
      361 ttccaaaaag agctgttccc atgaaagagc agttttgtat aagttgtgat gctgtggcat
      421 caagagttct tttttgcata tcatctgaat tttcatctat tctttctaga atactttttt
      481 ctattttttt taaagacata tcaagcactt gaagtgctcc tataaaatca tttgcatcat
      541 tgatttgaga gcaaatttga tttgctttaa attcattcac gccttgaatt tcacctaagt
      601 gttttttaaa tatatctaaa tcacttttca ttgtttacct ttcaaaaata ttgctcaata
      661 tttaaaaagc aaaaagtgtt cctaaattag gataagttag aatttaccca aaaaacaatc
      721 tcattgccaa ttttattcaa ggctttttga aaagcattat aagtagagtg gatgtctttt
      781 ttttctattt tttctttagt attgaaaatt ttatgagcta ttatttgatt gttttcaaga
      841 tttatgaaat ttacgcttat agaaatttga gcgtagtttt cattgttatt aagaatttgc
      901 tcaaaagagt taatcctgct ttcaagagca taatccgcac ttaaagagct tgttgaagaa
      961 agtagggttg taaaaatatt gctttgttca aattttgaca aaattaaaaa agaataaaga
     1021 ttgcttggta aatctcccca gaaataatgt gcgtatttgt tgctaaaacc attatctata
     1081 taaacaatag ctcgcgagtt taaatacaaa ggtgcatttg cattgcgaat tttaagaatt
     1141 ttaccggttt ttttaaaaaa aatatttgaa tctattcctt catcttttaa tatgatattt
     1201 tcatttttgt tgatggtttc gtgtcttaaa gagcatccgc ataacataaa aataaaagtc
     1261 aaaatacaga ataattgctt tagcattatt tttctcctgg tcctagttta ggtttggttt
     1321 ctttaaaaat caaatcagca gggctgtttt gtaaattttc tattagaata ttgctttcaa
     1381 ttaaaactcg tttaaaaagc tctaaatttt gcatcaaaga tgctttaata tcatcataag
     1441 tgtttaattt ttcatcagct ttttttatga aattttttaa aatcatcgta ctttctttta
     1501 tgtctttaag actggagttg aaattttgcg cactaaggct tatattatca gccatttttc
     1561 ctatttttaa acttgcgttt gaaagattaa ggcttaaatt tttagaatta gcgtttaaat
     1621 ttgcacttaa ttctgctaga ttttgcaaaa ggatttctag atttttaaga tttttttcgc
     1681 ttaaaagttc ttttgattta tcatcggccg ttttaactaa agaaaaaata tgttcacttt
     1741 gtctatctat agttgctaaa aaactttctt taaaaggaat gactggaagt tttccctgta
     1801 tagatactaa atctttgcta tttttacttc cgccttgaag ttggacaaat ttaagtcctg
     1861 tgataccttg aagttgcaaa gtagcaaaag tatcttcttt tataggggtg ttatttttga
     1921 ccttgatgcg tatgttaacg ccgagttcat cttgattgta aatgctgatt tcttctacgc
     1981 tacctacttc cacgcccaaa agccttacgg gtgcttttat gccaagtcct gcaacggatt
     2041 cttgtgtgtg aatttcataa tacttaaaac tttcttcttt agagtatcca ccaagccaaa
     2101 gtatgaaacc aaggcttgca aaaaatactc caaaaacaaa aagtcctaca aaaaaataat
     2161 ttgctctatt ttccactttt actccataaa tcttttaaaa agtcgttcat tttgcaggcg
     2221 taattcttca taagtaccgc aaaatccaac ttttttattt tctaaaatga taaaacgatc
     2281 gagtaaattt ttcatacttt ctttatcatg tgtaaccaaa atgatattta aatcaaaact
     2341 tttttttaac tctaaaacca aatcgtcaaa ttcacgacta ctatgagggt caagtcctga
     2401 agtaggttca tctaaaaaaa gcaatttact atcaagtgct aaagctctag caattgccac
     2461 tcttttttgc ataccgccac taagttcact tggaaattgt tttaaaacac tttcgtttaa
     2521 gcctaccatt tttagcttca ttaaaaccag ttcttgtatg ctattttcat ctaaatgagt
     2581 gtattctttt aaaggaatgg cgatattttc ataaacatta aaaaagctaa aaagtgcagc
     2641 aaactgaaaa accacacccc attttttacg caaagcaagt gcatcttctt cgctgatatt
     2701 tttaagttta tagcctaaaa tttcatattc tccaccatca aaatgttcaa gcataagcat
     2761 ttgttttaaa aggacggatt ttccacttcc actacctcct aaaataccaa aaatttcatt
     2821 ttttttgatt tcaaaactta cgccatcatg gacaattttt tctccaaatt ttgtaatgat
     2881 attttgcgct ttaacaacca tttaaattcc tgcagaagtt aaaacaacag agaataaagc
     2941 atcaaaagct atcacccaaa aaatagcatt tacaacgctt tttgttgtat aaattcctat
     3001 gctttgtgta gtgtttttta cctcaaaacc acgaaaacaa gcaataagtc ctattaaaaa
     3061 tccaaaaata ggtgcttttg caagtcctat aaagatatgt tttatatcga cagcttctct
     3121 aaagcgtctt aaaaattcga caaaagaaat atcaagattt aattttgcaa tcatcattcc
     3181 gcctataata ctgattgcat cgctaatggc aacgattaaa ggcatggcca ctaccaaagc
     3241 catgacacgt ggaataataa taaattcaaa agaacgaaaa cccatagtat tcatagctgc
     3301 aatttcatca gtaattttca tcactccaat ttgtgcggta taagaacttg cacttcttcc
     3361 cgcgattact atggcagcga ttaaaggtgc aagttctcta gtggctgaaa ttcccatcaa
     3421 atccactatg aaaatattgg ctccaaattg tgcgagttga taagcagcct gataggctaa
     3481 aaccactcct actaaaagag cggttaaaat aactataggt aaggctttaa aagcagaatt
     3541 ttctatatga tataaaaaag caataaagcg aaaattttta ggatttttaa ggcataaaaa
     3601 aagacttgtg aaaaaagctc ctgtgaaatt gatgaatttt cttaaaattt ttaaaagttc
     3661 taaacttaat tttccaagat cgataaagta ttcactgaaa tttttatgtg atttttttgt
     3721 tttgcttagt ctttggtagt ttttttcaca aagttcaaaa agggtttgaa agcgtgaatt
     3781 taagccttct ttggtgattt taatattttt atctttaaga tcattttcca aagcaaggaa
     3841 aaatctcact ccagcggtat cgattgcttt tagatcttta aaatcaaaaa tcacttcctt
     3901 gctttggatc aaagctaaaa aatcttttat ttttaactta taaatgcttg ttttatccca
     3961 aattccaaag ataaaaagag tgttattttg aaatttgaaa tttgtattca ttttatttgc
     4021 taaggataaa atttacaagc tttgaaacgc taaatccaaa gtgttcaaac acatctttgt
     4081 ctttgccgct ttctccaaaa ctttctatgc catacacttt atggcaaaat ttataaagtt
     4141 cattagaatg tgctgcttca acacctataa cttcaccttt taacaatctt tcttgataag
     4201 ctttatcttg tttttcaaaa agttcaaaac aaggcatgga aacaacatta caagcaaaac
     4261 cttgtttttc aagttcgttt gtactttcta aacaaagcca aacttcactt ccacttgcta
     4321 aaagtgtaaa tttagcctct ttgctttctt tgagtaaata cgctccattt tttacatctc
     4381 caaaaacagg ttcatttaga gctctgagtt tttggcgtga aagcagaaaa gcactcggaa
     4441 tatcagcatt tagggctatt tgccaagctt tgacattttc caccccatca gcaggtctaa
     4501 aggttaaaaa atttggcata gctctaaaag tgctaagttg ttctataggt tggtgtgttg
     4561 gtccatcttc gcccacgcct atgctatcgt gtgtgaaaat gaaaaaatgt ttgattttca
     4621 ttagagctgc tattcttgcg gcaggtttta agtactcgct aaagatgaaa aaagttgccg
     4681 aaaatggtaa gaaaattcca tatcttgcaa aagcattgtt aatcgctgcc atagcgtgtt
     4741 ctctgatacc aaaatggata tttttacctt ctacaaagtc tcccatactg tgaagttctg
     4801 ttttattcga agggcctaag tctgcacttc cacctaaaaa tccttctaaa tttttagcta
     4861 aaacatttaa aatttcacca ttactatctc ttgtagcaag atcttttcct ttaaaatcag
     4921 gataagctat cttgttaaaa tcaggattta atagcctttc taaaagttct tttttagcac
     4981 ttttttcaag cttatctttc cattttgctt cttctaaatc cccaagttct acagcacttt
     5041 caaagcggat tttgcttgct tgtgggatat gaaaactgat atttggatca aaacctgctt
     5101 gttctttggc ttttttaatc acttcttcac ccaaaggtgc gccatggctt ttatgactgc
     5161 cttcaagctc tcctgcaccc tttgctatag ttgtttttgc gatgataaga caaggttttg
     5221 tggatttttt agcttgttct aaggctttat taatttcttc ataatcgtgt ccatttatac
     5281 ttaaaacttc aaatccttgt gcttcaaaac gcatttttac attttcgtta aaggctaaac
     5341 ctacatcgcc ttctatggag atatcgttgc tatcataaat aagtatgaaa ttatcaagtt
     5401 tgtgaagtcc tgctaaagaa caagcttcat aagaaatgcc ttcttgcaaa tctccatctc
     5461 cgcaaagaca ataaatttta tgatcgatta aatcactacc tagtaaattt tgtgcttttt
     5521 ttgccgccat agcaaagcct acagcattgg caacgccttg tcctaaaggg cctgtagcaa
     5581 tctctactcc aagagttgaa atttcagggt gtcctggggt tttagaatga agttggcgga
     5641 aatttttaag atcttctagg cttaaatcat agccacttaa atgtaaaaaa ctataaagta
     5701 aagcacttgc atgtccacct gaaaatacaa gtctatcacg gtttagccaa gttggatttt
     5761 tgggattgtg ttttaaatga taacttaaaa cacttaaaat atctgctaag cccaaaggtg
     5821 cacctgggtg tcctgagttt gctttttgca ccatatcggc acttaaaaat cttagagtat
     5881 ttgcctgttc ttgtaaaatt tgaatgtcca ttttttgcct ttataagtat tgaattatta
     5941 aattttgtat catttgtgcg agtttttcat taagtttttc taaatcttgt tcgcattcac
     6001 taagaagatt ttcttttgtt tttatggctt gttcaagtcc aagcaaattg acaaaagaat
     6061 ttttatgaat atcgttatta gtaggctttc cgctttgttc ttgacttgtg gttacatcga
     6121 taatatcatc attgatttga aaaatcagtc ctagttttaa accaagtttg taaatttgat
     6181 tgctttcttc gttgttaagt tcgcaaattt cacaacccat ttttaaagct gcagcgatta
     6241 atcttgcggt tttatgtgtg tgtaaaaact caagttcatt taaactcagt cttttgtctt
     6301 caaaaaaaca atcaatagct tgtcctatga ccattccatt aagtcctgca ttaaaggcaa
     6361 gggttttgat gagtttgatt ttgatttcat cttttaaatg agcatgactt agaactaaaa
     6421 aagcttcagt atttaaagca tcacccacta agatggctgt agtttcatcg tagcttttgt
     6481 gtaaggttgg aattcctcgt ctaaaatccg cattatccat agcgggtaaa tcatcgtgta
     6541 tgagtgaata agtatggata aattccaaag ctaaagccac atctaaagct tgatttaaaa
     6601 gtttaggttt attgctttgt actacgctta aaagcaattg tgcacgaaaa tgcttccctc
     6661 ctgcttttag cataagagct aaagcttcat taaaaaaagg atgaaagctt tcgactttag
     6721 gtagattttt ttctaagtga tggataaaaa gttcttttaa attcacttag taagccttat
     6781 gaaaaattga aatttaccat cgccacctga gttggcattt ccgcctagtt cattgttgaa
     6841 atttgataaa ggtaatttag tacttttgcg ttcaattaag atgctaaagt cattaccagc
     6901 gcttaaaata ttttgtaatt ctttaaaatt atttaaaata atattattaa cgcgtaaaat
     6961 tttatctcct accataaatc ctgcatttga tgcttttgat tttggatcta ttttggttac
     7021 aacaagacta gtattaaccg ttaaaccaag attgcttgtg aaatttgtaa tttttggttt
     7081 tggtttagaa tcaggaaggt taaatttgct caaatctttt gcaaaaactt cagtagaaat
     7141 atttaaatcc atattatcac gtaacacttg aaaataaaga gtgcttccgc gatctgcaaa
     7201 aagaattttt tcattgagtt ttcttaaatc attggcgggt aaaccatcaa cacttataac
     7261 ttgatcgttg attaaaaatt gtggattttt tcttacattg ttaacataaa ttttattttc
     7321 tcgaataaca aaatcaacgc caatatcccc ccaataaaca tcgttatatt tcataaaatg
     7381 ttttaaatag cgattgccta taaaagagct attatttaaa gcaatcccca tcatttcaca
     7441 gcacggagtc cctaaaagtc ctattttaga attaaaatca agttgatctt tttcatcaat
     7501 attttgagct aaatacttaa tatgtcctat atagggttta ttaggatccc aaattccaac
     7561 ccaatcatta cgagtaagtt tttcttcatc acccatagga gtagggatta ggctaaagtc
     7621 agttcttaca aggtataaat ttaaaaatgg atcgtatttt acatatttgt taagcttagt
     7681 attaggctgt tttaacacag caagtaaatt ttcactgagt gcaaaagctg gcattccttc
     7741 atagttaagc atgcttgcct tatttctttc ataacctgct aaaaaatctt caaatttagg
     7801 tctttctata ccaaaagaca aagtaaaaag catacaaata attaaaattt ttttcataat
     7861 ttcatacctc caaaaccgcc taaaacatca ttcgccatac ttgaacgatt ttgcgcaacc
     7921 atagccaaaa catcattaat tgcagaaata agtaaaattt gcaaggattc tttatcttca
     7981 agtaaagaat catcaatgct aacatcgata atttcaccct ttccattggc acttacttta
     8041 acaagtcctg ctccactttt ggcactaaat tcacgatttg caagttctag ttctatattt
     8101 tttgcttttt cttgaacttg atttaaaagt tctcccattt tagaaaaatc catattttca
     8161 aacattgatt atccttgatt ttttaaaatt tcattaacaa ctactttatc actaaaagga
     8221 tattttatcc ctttaatttc ttgagtagtt tcatcacctt tgcctaaaat aacgactaaa
     8281 tcgtcatttt cttttagttc taaagctttt tttatagctt cttttctatc ttctatcatt
     8341 aaaacttttt cttttttagt aaagcctgat aaaatttctt ccatgatggt ttttggttct
     8401 tcactgcgtg gattgtcact tgtaatgata gcaatttttg caaaatgttc gacgattttt
     8461 cccattaaag ggcgtttggt tttatctcta tctccacctg ctccaaaaac aacgatgagt
     8521 tttttatttt taagagtgtc aagcactttt tcaatgccat caggcgtatg agcaaaatct
     8581 acaatcacgc cttttgctac ttgttctacc ctgccacaaa ccccgccaaa tccactgata
     8641 gctttttcca agtcttttaa atcaggcttt acgagttcat tcacacaagc actagcaact
     8701 agaagattgt aaagattaaa aagtcctagc aagggcgagt ctatgtgaaa agtttgattt
     8761 ttatttgtta caatagcact aatgccttct tctaaagaat aagctttgat ttgatataaa
     8821 gcaggatttt ctatgccata agtaaaagca ttacgcacat taaatttaat agccaaagca
     8881 tctttgttga taaattttaa actctcatcg gtaaaaaaaa gttcttttgc ttctttataa
     8941 ttttcaaaag taccgtgaaa atctaaatga tcttgagtga tattggtaaa aattttagca
     9001 gcaaaattta agccttcgat gcggttttga attaaggcgt gtgagcttac ttccatgatg
     9061 aaaaaatcac attttttttg agtggctatt tgtaggtatt ctaaggtttt aagaataggg
     9121 gaggtggtta aggatttttc atcgatttgt tcatcgttga taaaagctcc tcttgtccca
     9181 caaagcccac acttataacc taaatccaat aagatagaat aaatcgctgc tgcggttgtg
     9241 gttttgccat tggttcctgt gattcctatg atttgaatct tttcatcgat ttttaaaagt
     9301 tttttacact catttacatc aatgattttt gcaccttttt ctaaggcttg agcgtgaaat
     9361 ttagcatttt gtgtggtttg caaaaaaaag cattcttttt cacactctaa ggtgttatct
     9421 gtaatgaatg aattttcaag ttttaatttc acttttaaat cccatgagtt tttcttggag
     9481 tttgataaat ctatcatttg cccaaaaatg aggcataaca ttttctatgt aatttaaagt
     9541 catatcttta tagccattat caagtaattt ttccaaaaaa tctaaaaaat catcacgatt
     9601 atcaataact aacttagtgc tgttaatgat attttcaaaa cttttttgaa agccaagttc
     9661 ttcttcgctt tttaaaaaat cttgataatt taacgcatgc ccatcttcaa attcgttttc
     9721 ctgtttgttt tcttgttttt taaattcaat tgtacttaaa atttcttcta agtctttatc
     9781 aatgctagag attttgtaat gttctatata aaaatcaaaa agtaaagaag cttctttagg
     9841 agattttaaa gcaagatcac aaaggcagat aaaatttagc aagcgtttat ttttgcgttt
     9901 ttcataagcc atagaaaaat acatttttgc agttttaaaa tctttcttgt aaaaatgttc
     9961 aattccaagt tttttataat tttgcaaatt cgtctgctcc gccgtttaaa ttgattatag
    10021 tgatttctgg atgaatatca atcttaagtt gcctttcaag accatatttt agcgttgttc
    10081 cactcgatgc acagccttta caagctccta ttaaatggac ataaacaatc ccatttttaa
    10141 ttcctaaaaa ttcaagccct ccgccatcac gttcaagcat aggcaagctc ttttctaaac
    10201 ttgctttaac aggatttata agctcttcat cactaaaagg catcataatt tatccttaaa
    10261 aatttttata tactttagcg tgattgtgtt taaaaaaagg taaattaagg cttgaaattt
    10321 aaataaatta aaaaggttcg tcattatttt gtatgctaaa tcctaaatca taagctgtaa
    10381 agtttttgtt accaaaaatt ccatttaagt ttctaaatga ttgttgcaga atttcttcgt
    10441 ttttttcata t
//
LOCUS       DAPIWU010000061        10165 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.061, whole genome shotgun sequence.
ACCESSION   DAPIWU010000061 DAPIWU010000000
VERSION     DAPIWU010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10165
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.061"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..504
                     /locus_tag="RJ285_001202"
     CDS             <1..504
                     /locus_tag="RJ285_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDV7383976.1"
                     /translation="FNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSFEGKVVRII
                     DGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEIIYKNKDTYG
                     RIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKESNPIEPYK
                     WRKHNKF"
     gene            513..686
                     /locus_tag="RJ285_001203"
     CDS             513..686
                     /locus_tag="RJ285_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383977.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(687..1265)
                     /locus_tag="RJ285_001204"
     CDS             complement(687..1265)
                     /locus_tag="RJ285_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383978.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(1338..2228)
                     /gene="cmoB"
                     /locus_tag="RJ285_001205"
     CDS             complement(1338..2228)
                     /gene="cmoB"
                     /locus_tag="RJ285_001205"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDV7383979.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(2311..4036)
                     /locus_tag="RJ285_001206"
                     /pseudo
     CDS             complement(2311..4036)
                     /locus_tag="RJ285_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(4094..4234)
                     /locus_tag="RJ285_001207"
                     /pseudo
     CDS             complement(4094..4234)
                     /locus_tag="RJ285_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4499..4823)
                     /locus_tag="RJ285_001208"
                     /pseudo
     CDS             complement(4499..4823)
                     /locus_tag="RJ285_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344367.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4825..5355)
                     /locus_tag="RJ285_001209"
     CDS             complement(4825..5355)
                     /locus_tag="RJ285_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HDV7383980.1"
                     /translation="MVGKYVTEYDSNNNHGRYFFTSTIEKPAYLYVYSPNDFFTSLAV
                     NGPSMTGATKSLVGTGAIKNRENYKETSDLITKDNISNEVLNSIFNDLKFNSSVDISD
                     LSKFYKNGKILTADELTSINQSMDFITALYGQTQDSNNATFANALKEVLGNSYGDLGK
                     ANQVIIKTKEILSQNS"
     gene            complement(5476..5815)
                     /locus_tag="RJ285_001210"
                     /pseudo
     CDS             complement(5476..5815)
                     /locus_tag="RJ285_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872973.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutination protein"
     gene            complement(6178..8190)
                     /locus_tag="RJ285_001211"
                     /pseudo
     CDS             complement(6178..8190)
                     /locus_tag="RJ285_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8618..8992
                     /locus_tag="RJ285_001212"
     CDS             8618..8992
                     /locus_tag="RJ285_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDV7383981.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERVRSEIFFNKKVDIFDAS
                     KGHFLLTKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILFFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(8984..10135)
                     /locus_tag="RJ285_001213"
     CDS             complement(8984..10135)
                     /locus_tag="RJ285_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383982.1"
                     /translation="MLNAKEQKLVDVKPVENFYPKLSVQECNTNCLFDLLESRLYLSF
                     LSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEKTIKSYSNTIINSS
                     IAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGFTLKGANELKNYSG
                     NMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAIFSDGSALSSNLNS
                     RILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNAPLIKTALASSQLRIYNIH
                     PYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNEIFNQSIDYNWIAY
                     ATSIGVDYFYTEFLNKKSENLFDEKIKNSQVDYKVRLMQGKQASFEELK"
BASE COUNT         3302 a         1483 c         1510 g         3870 t
ORIGIN      
        1 tttaatctaa gaaaattatt aagtgatcca aaaaaacttt tttctgtatt aatcttcact
       61 cttgtagttg tttttatcca gaactatatt gcccaaaatt ctagttttga aggaaaagta
      121 gttagaatta ttgatggaga tactatagaa gttaatcatg aaaacaaact cgctagaata
      181 agattttttg gtatagatgc accagaactt aaacaaagtt ttggaaagca atcaaaagaa
      241 gctttaagta gaattttaag cggcaaacaa gttgaaatta tttataaaaa taaagatact
      301 tatggtagaa ttgttgctat tgtaaagctt aatgatgttg atattaatcg atttttggta
      361 agcaaaggct atgcttgggc tgatacttac tatagtaacg cttataccaa agaacaagaa
      421 aatgctaaga aaaatcattt aggtctttgg aaagagagta atcctataga gccttataaa
      481 tggagaaaac acaataaatt ctaaggaaaa acatgaaaaa atatacttta atggtgctat
      541 tagctttagg aatttctgga tgttttgtaa atgaaagagg gatttcaaat cgtttttatg
      601 atgattgtaa agagtattat gatggaagtg gaacttatca taaggattgc ccaaaaaatt
      661 gggtagatat taaaatgact ccttgattat tttccaccca cagaggccat taatgcagct
      721 gctacagctt ctggattgtt gattttggca ccttgttctt gattttctgt aggtttaaca
      781 gtgttaagtg gcggacgctt gagtttaaat atatgctcat cggtgctaac aacttgtatc
      841 gttccttcaa acattttaac ttctttaaca tgtccaacca cttttacatc tctttttttg
      901 gaggtttcgt caaaaagtgc atgagcttca agttctaaaa catcgcctaa tttaagcgga
      961 gcataaaaaa aacactttga tccaataatc actgaaaatt ctttattgat agaggcttgt
     1021 gctacatagt ttgccgcagc gaaaataaag gcatcaaaaa tcaatccttg atcatctgct
     1081 accatttcgc ttgtggttat taaaattgat ttggcatagt ttttatcaat ttctataatg
     1141 gttccagcaa gcgaggtgtt taattcagga caagtgagta attctgctct aacgcgagat
     1201 atatcttctg cagatgcgta ttcttcaagt tgtgcatatt cttcaaaatt atcttttttt
     1261 gccatatcta acctttaaat tctacttatc tacttcaaaa tatctaattt tcaatatcgg
     1321 taaaaaataa aaagaattta tattttaatg cgtatataaa ctcttttggg tgcttcatag
     1381 ccttcaatgg taagattttt atcctttgga tctaagaaat tttccagcga aaaagagtct
     1441 atccattctg tttttctttg ttcgttttca tcggtttttt ttgtagccaa aacttcaaat
     1501 tctttaaatc ctgctctttc acaccagttt tttaatgcac taatgcttgg tacaaaataa
     1561 atatttggaa ttttagaata agttttatta ggcacaagag cgatttctct ctcatcttct
     1621 atatacatgg tatctaaaaa aacaactcca tttttattaa gtcctgcttt taaatctttt
     1681 agcattttta taggatcact tctatgataa atcaccccaa gacagaaaat cacatcaaat
     1741 ttcaagccat agcttggaag atcttctacg cctaaaagtt cgtattttat aggagtttta
     1801 gctaaagcgt taatgagttc aaattgcaaa cggtatttga tagaaggatc aaaacctatg
     1861 agttttgcag gattaaattc aagcatttta aacatataat aaccattatt acagcctata
     1921 tcagcaacgc atttttgaga aatttcgttc atgaaaggct ttagaatgtt gaatttaata
     1981 aaactttgcc attctgtatc gatgaaaaga tcgtctattt taaaaggacc ttttctccat
     2041 ggtttaagtt cttttgctat agctaagatt tcatctttgg cttgagaatt tgtagataaa
     2101 tttacactat catctaaaga aaaattgcaa gcaagattga gagctttaag ttcttgaatt
     2161 ttagcgtata aagggtgatt tagaaattgt ttttcaagta aattttcttg catttttatc
     2221 cttgacattt gcttttaatg ctaaattata acattaaaag cttttatggc aatataaatt
     2281 atatgcatta aatatttgat caaaaataac tcaaaaatac tttctaaaga ttacataagc
     2341 tttagaacta taatcatcat ctagtttata tttctttaaa gctctagcta aatcaagctt
     2401 gacataaaaa ttccctgttt tattataaag cagttgtaaa ccataagcat ccatatagtt
     2461 tgtttcactt gctctatata gtttagaatc attctcatac caagaataac ctatatcata
     2521 aaaaggagtg atataaaaat cttttaaagg agtagccatt ctaagtccaa agctagccac
     2581 tacagcatta tctccttctc catctccatt attataagcc cttactccat aaggatctcc
     2641 taaagatata gtttcactac tatctaatgt agctccattg acaacttgtt gataatttaa
     2701 actaaaaaga tgagtaaaag tatcattaaa gaaataagca ttgttaagat tgacattgag
     2761 tttagcaaat tttccaaagc catctccatc tgttttagaa ctcattccta atatagtagt
     2821 tcccccatct ttaacattac catagcttac attagcacta taagaaaaac tatcattact
     2881 aatgccatta taaactcctt ctataccaaa gcttatcgta tcagagcttt tatctatagt
     2941 catgatattt aatcttgaat tactaagctt tttatgataa taacttgaag ttaaataaaa
     3001 agaattataa gtcgtaatcc ccaaaggata ttttaaatct atacctagat tttcagaagt
     3061 tcctataaag tttgcatttt tataagctcc tcctaaagca tagtttcttt tagaataact
     3121 tggagtgatt tttaaattcc ctaagaaagt agtatagctt ataccatagt tagtttgtgc
     3181 ttcatcgctt ctttgcaaat aagcattaag actatctcct tgatgagcta tgttattaaa
     3241 actcatacta gcaccacccc tattatctgc ctgattcttt tataccgtaa ttatccccat
     3301 aaaacaatac agaaacgaag ctatcactag gggtagtttc tatcactata tctgtgtcac
     3361 ctggattatc tcctgctttt aaagaagcaa gagtttgtat cccatacatt tcattgactt
     3421 tataaaccgc atcttctact aatttagtag tgatgatttc acctttatga ttaggtaatt
     3481 tgctttctat agcataatct cttacactag aattgttttg aaccacatat ttacctaaaa
     3541 cacctaaggt gatattgatt tgaatttgat cttttagttc ttgttgtggg atataagctg
     3601 tagcagcagg ataaccacta gcttgaacat aataagaaat aatattggct atatcttgta
     3661 agtcttgaac tgaaatactt tcttttttgt aatcgtttaa ggcttcttgt aaaacttgct
     3721 catctaaacc tagatcttta aagtttatgt ttttattggt aatatgaaag ttaaagctaa
     3781 ctttatgaat tgattcttct ttagaagtat tttttaaaga aggagtgttt gaatttgggg
     3841 ttttagtttt taaagtatta tcattagaca agttaggttg atttttttga gtgtttttct
     3901 ttgtgttagt ggtttttgaa ttattattat cactagtatt agaatgatct atgataatca
     3961 ctccatcttt tacttttaaa gtgttattgt agttttttaa gttagcatct tctttataag
     4021 gagattgttc taacatttgt atggtttttt attatcttta atatcactag cataaaggct
     4081 taagatagct aaactagata gtaagataat gcgtttcatt taaattttcc ttagtgtttg
     4141 tttgattttt aatctttaaa ctttgtttgt tttattaatt tttaacaaga tccaaaaggc
     4201 ttttaacctt ttggatttta atcatcttga gcaagggttt cctgctttaa aattatccga
     4261 tactatacaa cattaccact ttcttgagtg ctggcttcat ctatacttgc ttgtttatca
     4321 tcttcattga tatttggatc ttcatctgta gtttgcataa gcaaagctgt agtaatgtca
     4381 ggttcttgtt gtcctatggt atcatttggg ttattattag aaccgttgtt gttaccattg
     4441 ttaatatcac ctgaatcggt tccatcgttt ccgttgttgg agttgttgga tcctgaattt
     4501 ataatggata ctggcttata gtttgcacta tattttccat tgactgtaag atgactagtt
     4561 ccatttatgc tcgcacttgc taaagtttta ttagaatttt ctaaactaga attagtactc
     4621 gctgtagcga tttgaagagc tattgtagct tgttataaat cactagaaac tttatctaca
     4681 gcttgtttta aacctgcaat aactttatcg ccattattac ctgttatacc acttagagct
     4741 gtattgtaag ctttaactgc ttcattataa gcatttacag cagtatcgta agttttttga
     4801 gcgttttctt gcccttcggt cattttagga attttgagaa agaatttcct ttgttttaat
     4861 aatgacttga ttagcttttc ctagatcacc ataagaattt cccaatactt cctttaaagc
     4921 gtttgcaaat gttgcattat tactatcttg agtttgtcca tataaagcag taataaaatc
     4981 catactttga ttaatgcttg ttaattcatc agctgttaat atttttccat ttttataaaa
     5041 tttacttaag tcgctaatat caacactaga attaaatttc aagtcattaa atatagaatt
     5101 taaaacttca tttgagatgt tatctttagt aataagatcg ctagtttctt tatagttttc
     5161 acgatttttt atcgctcctg ttccaactaa agattttgta gcacctgtca tagatggtcc
     5221 atttactgct aaagatgtaa aaaaatcatt agggctgtaa acatacaaat aagccggttt
     5281 ttctattgtg cttgtaaaaa aatatctacc atgattatta ttagaatcat attccgtaac
     5341 atattttccc accatagcaa tcccttctcg tactgtcata gtttctaaat ttataacatt
     5401 tcctgcattg gatttaatta caggtgatat tgttttagga tctccttcaa atgctgaagg
     5461 ttttccatct tttacaaact ccttcatccc cttatcctct attgatgaag cagacagaat
     5521 aatttttttt gcattaatac ttccaccatt gagtgttcca tctataatga gagcttttag
     5581 aaccataggc aatatttaaa taattttggt tagtttttcc ttgtccaaaa tttacagttt
     5641 caccacttgc tatattaaaa ccaccacccc attggataac agagtttgtt ttacttcctg
     5701 agatattcat agtgccacca ctaacactta tacttccact tgttccatga gtgaacttac
     5761 ccccacttgg taaagcatag ctttgtgtaa aaagaaagaa cctacaacta aagataaaga
     5821 aagtttattt aactttttca tgacttgctc ctttttgtaa gattaagatt taagaatctt
     5881 ttgtttatat ttataaaaat acaaataaat cattcctatc tttaagatag gaatgattta
     5941 ttttatcctt gcgtaaatgc ttttgccatc ttgagatatt cttgcttcat aagaaagctt
     6001 ttataaattc atatttttta atctatctat agaacttagt ttaaaatctt ctttgttttt
     6061 ttgcattttt tcaataaagc tttgaagttc ttcttgattt aaagtattag agttttcatc
     6121 tataaaacct tgctcacttt gtaagattaa gatttcttta tttttaaggt aggggtatta
     6181 ctctttgagg gtataaagag ccaatactcc ctcgctagaa atattaatag gagcatcgta
     6241 tgacttcaaa aaggggagtt gtgttgattt tattggatac aataagataa taatgctcaa
     6301 agttattaat aattctagct tcaactttag tatttaaaat cagtctattg tttttactta
     6361 aactgatatc tgaaggagct atagcattag aagtactata attatcttca taatgtacta
     6421 aggctcctgc taatatatct atgaaagtgt ttttaaatat atttaaattc ccgcctatat
     6481 aaggtattat tataagattt agcttcactt aaacctgtaa tggccgaagg agctataaaa
     6541 acagaattgt tatttttata ctcatcaaga ttgagattgt ttatgattaa ggtattatca
     6601 tggccattgt ttgaaagtcc agctataata cttaaaattc cttctctttt atctgaagct
     6661 acaccaaata aagtatcatt gataatgatt ttattataag cagcttcatt ataagccata
     6721 atcaaataag cattatcagc tgcattagaa gaatagtttt ttatatctat ggtattatga
     6781 ttggctttat ctaaagctct tatgatgatt ttagaacctt tatctatatt acttgcatca
     6841 gtaatgcttt gaacattgtt ataatttata gtattataag aagcttcttt ggcttctgtt
     6901 aatacagtta gatttctaaa agaagcaaaa tctttaatcg atactttatt gttattagca
     6961 ctactaggat aaaagtcttg attattaaga aggtttttct tagctgtata aatgtataca
     7021 ggtaaggttg acatagaatt attaatataa actttattat aatccgcatt gccttccaag
     7081 gttctaccag ctacaatatt taaagcatct ttatagcttt gagaaagatc ggttgtggta
     7141 agatcgtttt taatgttaat ggtattatga ttaactcctt tagttgcaaa gtcaccataa
     7201 aaagaatgtt ggttataacc taagaagtta ttagcgattt ctaaaggatg ttttaattct
     7261 atgtttaagg tattataatt tacttctcca ttattataag ctcctgcgta gaagttaaac
     7321 aaagcttgag caaaaatgtt ctcattgttt ttattttttt aggtttttaa tatcttttaa
     7381 tattgatagt attatctaag gcttgtcctt gttcggtttt tccacccaaa aaatcagcaa
     7441 ataaaacaga attataagct aagggttgtt tatcatggtt catatacata tcaagattaa
     7501 aactatctat gtctaaaagg tttttactgg cttgaaagtt tttatctgat tcgctatcta
     7561 tataacctgc gctaatatga gcagcagcta aactagcata agctttactt ggaccatgga
     7621 taatcatatt agcatctttg ataaagattt tattgttttt tacattacct tgataagcta
     7681 aaccacctac aaggtgagtg attctttcat caaaggtatt attaccattt ttatcttttt
     7741 taggcaagga agtaaaaaac tctacactgc tacctgcttt tatatttaaa ctattatttg
     7801 tagaatctcc ataagtggct atagctccga ttaaataagg agaaccattt aaggctaaat
     7861 cataagtgtt ctcaactccc atactaatat gggcatcttt ttgaagtatg gtttggttat
     7921 agcttgcatt actataatga gtaaaggtag aactcattaa gaaattcatg cgttgattgc
     7981 ttttagaatt actagggttt ttatatgagt atctttaggt ttaagataaa aaactgaact
     8041 aagttctcct tgttctaata taagtttgtt ataacttgca tcagcatgat cggtttttgc
     8101 tgtgattaca ctctaactgt tttttatact acgatcggct gtattaacac catgccttgc
     8161 tttaaaagaa agaacttcat cttctctcat atcaggagta agtaaataat gtttaaaatt
     8221 taaatcgttt atatttgtaa tatttggttt atgattgtta aatattgtta atatattgtt
     8281 tagaactctt agcataataa tttatacctt ggaatttttt ataagtagaa ttggttttat
     8341 cataaagttc gttatcatta aaataatgct ttggaatatt gaaatttcga ttgtctgtag
     8401 tatttgcttg agtggctgca aaagcgttga tgcttaagaa ggtaacaatg gaaagtttaa
     8461 aacaaaattt ctctataccc cctcccagtg aagttaaaaa gctttattaa attaagattg
     8521 gacggaattt ttaatataaa ctaaaaagcg atatcaaaga atttccgttg tataatctaa
     8581 tgttttttaa atgtgaaata ttttttaagg taaagcgatg aaaatgcgtg tgtattatga
     8641 agatactgat gcgggtggag tggtgtatca tagtaattat ttaaaatttt gcgagagagt
     8701 aagaagtgaa atttttttca ataaaaaagt agatattttt gatgcgtcta agggacattt
     8761 tttacttaca aaagcaaatt gcaatttctt aaaacctgca aaacttggag atatgataga
     8821 gattaaaaca aaaattttag aagtcaaaaa tgcttctgtg gaaattttac aagaaattta
     8881 taaagatgaa attttgtttt ttaaaatgga attaacttta gcttttatta aaaacgaaaa
     8941 accagctaga atggatatgc agttaaaaaa gctctttgaa gaattatttt aattcttcaa
     9001 agcttgcttg cttaccttgc ataagacgca ctttgtaatc aacttgagaa tttttgattt
     9061 tctcatcaaa taaattttcg ctttttttat ttaggaattc ggtataaaag taatcaactc
     9121 ctatgctagt agcataagca atccagttat aatctatact ttgattaaaa atttcattaa
     9181 gatagactaa gttatcatcg tggttattga tagaattagc aatgataaaa ttttctctat
     9241 ctccttgttg tgttaaactt aaaaatgttg gattatagtt gatttgagtg gataaaagca
     9301 cataaggatg aatgttataa attcttagtt gagaacttgc tagagctgtt ttgatcaatg
     9361 gagcgttaaa aaatattgag gcattattaa ctccaccttg tgatcttaaa agtctgctga
     9421 aatcaagctt ctcgccttct atggtatata ttctagcatt attattttga gcaagaattc
     9481 ttgaatttag attgcttgat aaggcagagc catcgctaaa tattgcgata ttagcatttg
     9541 atttgcttaa aagtgtggca atttgagcat catagtcaat acttccaaaa ataatatttt
     9601 gatttgaaat ttgtatgttg tttttatgga tagtcggtat gaaaattttc atatttcctg
     9661 agtaattttt caactcatta gcacctttta aggtaaatcc agctatggca tactgatatc
     9721 cttgagcttg tgctgcatca agcgcggctc gaattttatc actatcttct gtgccggtta
     9781 aaaaaacttt tactttgatt tcagctcttt gtcttaaaag ataggctatg cttgaattta
     9841 ttatagtatt tgagtagctt tttatggttt tttctgggat aattatcgca agtttgacag
     9901 aagtaatttt ttgaacattt ttttcaaaat cagtaatgga atttaataat tttgcataaa
     9961 cattagataa aaattgatcg ttttgatctg caaattcact taaaaaacta agatataatc
    10021 ttgattctaa aagatcaaaa agacaatttg tgttgcattc ttgaacgctt aatttaggat
    10081 aaaaattttc aacgggtttt acatcgacta atttttgctc ttttgcatta agcaaaaagc
    10141 aagataagaa aaatattaaa aatat
//
LOCUS       DAPIWU010000062        10140 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.062, whole genome shotgun sequence.
ACCESSION   DAPIWU010000062 DAPIWU010000000
VERSION     DAPIWU010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10140)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10140)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10140
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.062"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(56..613)
                     /locus_tag="RJ285_001214"
     CDS             complement(56..613)
                     /locus_tag="RJ285_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HDV7383983.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPHS"
     gene            complement(610..1455)
                     /locus_tag="RJ285_001215"
     CDS             complement(610..1455)
                     /locus_tag="RJ285_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HDV7383984.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(1456..2580)
                     /locus_tag="RJ285_001216"
     CDS             complement(1456..2580)
                     /locus_tag="RJ285_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HDV7383985.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(2589..2900)
                     /locus_tag="RJ285_001217"
     CDS             complement(2589..2900)
                     /locus_tag="RJ285_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HDV7383986.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(2914..3783)
                     /gene="sucD"
                     /locus_tag="RJ285_001218"
     CDS             complement(2914..3783)
                     /gene="sucD"
                     /locus_tag="RJ285_001218"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDV7383987.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(3793..4956)
                     /gene="sucC"
                     /locus_tag="RJ285_001219"
     CDS             complement(3793..4956)
                     /gene="sucC"
                     /locus_tag="RJ285_001219"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDV7383988.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTTEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(4957..5859)
                     /locus_tag="RJ285_001220"
     CDS             complement(4957..5859)
                     /locus_tag="RJ285_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDV7383989.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSSVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFDDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(5856..8060)
                     /locus_tag="RJ285_001221"
     CDS             complement(5856..8060)
                     /locus_tag="RJ285_001221"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDV7383990.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILAAFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNIA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLKGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCSNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(8177..>10140)
                     /locus_tag="RJ285_001222"
     CDS             complement(8177..>10140)
                     /locus_tag="RJ285_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HDV7383991.1"
                     /translation="ITEIFKRVNKRIELPQSLNLWVAYRAKGEFYHLDYLQGFIDFTK
                     DNYYLDNISASGYVNNVKVRLDDKMNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSS
                     SKVYLYDLFDEKKVGIYLRIKSDNLKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELK
                     IDFHDKGEISYSGILALENASISLADFNITKAFVKLNQNDLNIENASVKNGFLEADFN
                     AKFDLQKQQGNFNTQISRLYFDNGELLDLKNQNVEVKLDYSQNVNISIPQWNLILNFK
                     DGLEANLSNPKILFSFSPLLKKFGFIDAKNVYYKTLNFEDFNASVNDAYFKNNLLING
                     QTPYENDSFDIVKNKGIMEIHTQSDTASAKISSNNKEIHLKNLSYIYRKGSNSSNSTF
                     DISTNTQNISFGGANVALILPDSNKTLAFDRVEADLKGNALDLKGSRGNAKFELYYSS
                     NDVNLNVSNIDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLKGV
                     NQLISFIDTVPSLLMFKSPTFNQKGLSLYDGKIIFNRKKDLLSVLAINLNGDSVDIYG
                     LGSANLRLNTVDFSLELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSIDDPK
                     FHTEILTDTLKTPFNLIKNIIQLPANLLN"
BASE COUNT         3204 a         2046 c         1267 g         3623 t
ORIGIN      
        1 tttatttgca atgtgtaaaa ttttagaagt taaattccgc atgatgcgga atttattatg
       61 aatgtggttt tgcttgagtg gcgtatttta cacccagatc aaaagcttta gcatttgcat
      121 cacgagtttt tgcaggaacc atatgaagca tagtttcttt taaaacatct aaatctatac
      181 atttactcat ataagcagca attgcaagtg caacaactga ttgagtagcc acatttccta
      241 cctcatcttt agctatggta ataataggga tttcaaaaat ttgccatttt ttataatctt
      301 cactttcagg atgtactaaa tttggctcta caactataat acctccttct tttacacccc
      361 cacgaaaacc tttataaccc ttatctgcag tcgaaagcat aaaatctact tccccttcta
      421 cagcataagg aaataaaatt tctttatcat cgatgataat atccacctta gtagggccac
      481 cacgcacttg tgaagtgtaa gtagaagcct taaaagcttg acgaccttct ttaatggctg
      541 cttctgctaa aatttctcct gcggtgataa caccttgtcc gccttcaccg ccaaatctta
      601 attgatattt cattttaaag ctcctaaatc caccattctt ttttctttgg ctgcacgacg
      661 tacttcttca taagcgtggc agtattctgg ctgagaatta tcttcatgta aaattcctgt
      721 tggaaattta tcttttcttt cttcaaaatc catgctttca aatttagctt tatccacaac
      781 gcgattttta atccaatcaa gcatagctac agcttcgccc attttgtttt ttctgcctag
      841 attgatatga caatttgaaa aaacatctac aaaactataa cccttatgcg ctaaagcctt
      901 ataaattaaa ttttcaagct tattagcttc gatcacatta ccccttgcca caaaagaagc
      961 tcctgcagct ttagttaatt cacacgcatc aaaattaggg tcaatatttc caaattgagc
     1021 tgttactgta taaaaacctt ttggagtagt tggagaagtt tgagaattag taagcccata
     1081 aataaaattg ttgattacaa tatgagttaa atcaatattt ctgcgacaac catgtatagt
     1141 atgatttcca ccaattgcca aagtatcccc atctccgctt actacaataa catgtttact
     1201 aggattggct agtttaatgc ctgttgcata agctattgct ctaccatgag ttgtatgaac
     1261 tgtattacaa tttacataag aactcattct gccactacaa cctatacccg aaacaagaca
     1321 aacatcatcc atattccaac caagtttttc tatcgcgcgg ataatacatt ttaaaacaac
     1381 accatcgcca catccccaac accattgagt aggcatttta tctactctta gatattcatc
     1441 ataattaaaa gccatttata tattctcctt taccttagca ataatttcac ttggagtgat
     1501 aggacgacca tttgcacggt gcaaactaat aaaatcgcga cgcgaagtta ctctttcaat
     1561 ctcttcaaga tattgtccca tattaagctc gcttaccatt acttttttaa atttgcttac
     1621 aacttcagcg atttttttct cagccactgg ataaagagta atcggacgga aaagccccac
     1681 tttaatccct tgctctctta atctttgtat agcttctttt gctgaacgac tcacgcttcc
     1741 ataagcaatg attaaaaatt cagcatcatc aagcatatac tcttcataag tacaaatatc
     1801 ttcttgattg ttttttattt tacctatgag tctttccata ttttttttca ctataactcc
     1861 atcttcagtt ggaaaaccta tatctccatg atgaagtcct gtaacatgat aacgataacc
     1921 tgtaaagaaa ggatttaaag ttgcaggctc attttctcct gctgcataag gtttataatc
     1981 ctttttatcg ccttcaaatt ttttacggtt atatacttta atatctttta aatcaggtaa
     2041 aaccgcttta ccattcatgt gccctacagt ttcatccata agtaaaaata ctggagtcat
     2101 atatttttca gctaaattaa acgctctaat ggtttctgta taagcttctt caagacttgc
     2161 aggagcaata gcaatacttg caaaatcccc atgagttggt gctttagctt gaaacaaatc
     2221 tccttgtgct acacgagttg gaagacctgt tgaaggacca cctctcataa catttacaat
     2281 cacaagtgga atttcagcaa taaatgcaag tcctatttgc tctgctttta aagaaattcc
     2341 tggaccgcta cttgcagtca tggattttac tccactcatt gccgcaccaa tagccacgct
     2401 aatacctgaa atttcatctt ccatttgtat aaaagttcca tcatttgcag gaagcatatg
     2461 gcttaattca tgagctatct cactactagg agtaatagga taacctccaa aaaatttaca
     2521 tccacaatca atcgcagctt tggcgattaa aacattacct gttgctataa cttctctcat
     2581 tatttttcct atgctaattt tttgtatttg ttatttttta cggctacagc tctatcttta
     2641 gcctcagcag taagtttggc aaatttaaat tcatctcttt ttgccaccat aatagcaaaa
     2701 tcagggcaat gtgtctcaca ctcggtacag cctatacagg attcagggtg taccacctct
     2761 atcatttgtc ctaaaaccgc atgcacatca tcgcgcatag ctaaaacccc agcggggcaa
     2821 tagctaacac aaatattgca tgctttacat ctatgctcat ctacccaaac aggggtatct
     2881 tttggagctg tcatactcat gttttttcct ttattaacct aatatttttt gaatttcttc
     2941 accaattaaa gccggagaat ccaccacatg aattccatag ctttttaaag cttctttttt
     3001 agctgcagcg ctttcatcag cacttcctac tatggcacct gcatgcccca ttcttttgcc
     3061 tttaggagca gttgcacctg caatgaatgc taccacaggt ttgctaatat tttctttaat
     3121 aaatttagcc gcttccactt ccaaactacc accaatttca cctatcatta caatagcttt
     3181 agtttcatca tctttttgga attcacttaa aagttcttta taagcaagac ctatgatagg
     3241 atcaccacca attcctactg cagtagaaat tccataacca ccttgaacta cctgattagc
     3301 agcttcataa gttaaagttc cactttttga aataagcccc acgcaacctt ttttaaaaat
     3361 aaaacctggc ataataccta atttgcattc ttcagaagtg ataatacctg gacaatttgg
     3421 tccaatgatt ttcataccct ttttattggc atattgctta gcaaacatca tatcttttac
     3481 aggcgtatgt tctgtgatta caactgcaag cttaataccc gcatcagctg cttcaatcac
     3541 gctatcaccc acagcaaaag cagggacaaa gatcaagctc acatcagcct ttgttgcttt
     3601 aaccgcatct gcaacggtat caaaaactgg tttacctaaa tgagtttgtc cacctttatg
     3661 aggggtgaca cctccaacta tatttgtacc ataagccatg cattgctcag cgtgaaaagt
     3721 tgcttcttta cccgtaaaac cttgaactat tacttttgta tttttattaa ccaatatact
     3781 cattttctat ccttatccta ctaaactttt tacaagctct gcaccgtttt taagattggt
     3841 tgctgctttg atatttttaa gatttgaatt atctaaaatt gtctttgctt ctgctgcgtt
     3901 agtgccatca agacgcacta caattggaat atttacctca acattcttag tagcttctaa
     3961 aattccattt gctatcctat cacaacgaac aataccacca aagatattga taaatataac
     4021 ttttacattc ttatctctta aaatgatttc aaaagccttt gcaacagttt ctggagaagc
     4081 tcccccacct acatctaaga aatttgcagg ttttgcacca ctataattaa taatatccat
     4141 agttgccatt gctagacccg caccattcac catgcaagct acatctccat ctaatttcac
     4201 atagcttaag ccaaattcag ccgcttctct ttcagcagga ttttcttcag taatatctct
     4261 aagttcagca atttcaggat gacgataaag cgcactatca tcaaaactgc attttgcatc
     4321 aagggcataa aaatcccctt ctgtagtttt aattaaagga ttgatttcaa gcatattcat
     4381 atctttatcc atgtaaagct tataaagttt agctatcata gaaatgagtt ttttgccttc
     4441 atctttatca agtcctaaaa ctctcgctac ttcaagtcca tgaaacattt taaaaccaat
     4501 ttgtggatca atgcctactt ttgcaatttt ttcaggactt tctttggcta ctttttctat
     4561 atccatccct ccttcacttg aagcgataat ggtaatttgc tctgccattc tattaaacaa
     4621 aatagccaaa taatactctt ttactatatt agcgccactt tctatataaa gtttttgcac
     4681 gagcttacct tcaggtcctg tttgatgagt tactaaattc attcctaaaa ttttacttgc
     4741 gtaatctttt acctcatcta aattcttagc gattttaaca ccaccaccaa gaccacggcc
     4801 tcctgcgtga atttgagctt taactgccca aacactaccg cctaattctt tagcattagc
     4861 cacagcttca tctacgctaa atgcaacttt tccctttaag gtagggatac cattgtctgc
     4921 aaaaattgct tttgcttgat actcatgtat gttcatttat tctcctttat attgatattt
     4981 gattaaagat ttttctaatt tgtctttttc ttgcaaacta agatccattt tcatgatttc
     5041 aatcacacct tcaagtccta atcttgccat aactcccaag gctttgtttt gcactccaaa
     5101 ttctccatgt aaaatcacac tcataggtaa aaactcgcca cttcttatag actcaagcat
     5161 tcttatacaa gcactagcag gggctaaata agctgaagtt ttaagatgtt tgattacttt
     5221 agctccacct gttttaactt cattttccaa atcatcaaat tcttcttcat ttaaaaattc
     5281 gcttatattt ttatttttaa cacttgcgta agattttacc aaaaccatat catcattatg
     5341 aaaaccaata agtcttgtat ccacgcttga cattttgaca ttaagttttt tggcaagctc
     5401 atacttaaat cttgcattgt ctaaaactcc cgccatggct ataattttct ttgatgaaaa
     5461 aatcccgctt tcataaagag tattaagtag aaaatctaca ggattagtta aaataataaa
     5521 aagcggatct tctgtaaaat ctttaatttt tttagcacaa tcaagcataa tgcttgtatt
     5581 taactgaagc aattcttctc tactttgccc atcttttcta gcaaaacctg cactaaaaag
     5641 cactatatct gaatttttgg tatgagtata atctttagtg caaagtaaat ctatatttaa
     5701 atttaaagca gctatacttt gagtaagttc tagttctttt gcataaagca aatcctcatt
     5761 gatatctact aaaacaattt catttgctat ttctcttaaa atcaaagcat aagctacgct
     5821 tgaacctaca ttgccagccc ctataacagt gattttcatc tttgtcctat tttttctaaa
     5881 atagcgttaa aagttgcact tggacgcatg attttatttg ctttttcatc atcaaattta
     5941 taatacccac ccaaatccac tttcacacct tgtgcatcgt taaattcggc tctgattttt
     6001 tcttcattag aagaaagctc tagggcaata tctttaaaaa agctttgaag ctccatatca
     6061 cttgcctgtc ttgctaaatg atttgcaaaa tacattgcta aataaaaatg acttgttcta
     6121 ttatcatctt ctttaacttt tcttgatgga gctttattat tttcaagcca ttcgcctata
     6181 gcctcatcaa gacattctgc taaaacctta gctttatgat tgctacattt atttgcataa
     6241 aattccaaac ttgcttgcaa agccaaaaat tcacccaaac tatcccaacg cagatgattt
     6301 tcttcgacta attgttctac ttgtttaggt gctgaacccc ctgctcctgt ttcaaacata
     6361 gctccaccct ttaacatagg cacaacagaa agcatttttg cacttgttcc aagctctaaa
     6421 ataggaaaaa gatcggttaa ataatccctt aaaacattac ccgtgataga aataacatct
     6481 ttaccttctc ggattaactc taaacttctt aaacaagctt cttttggagt taaaatggct
     6541 atatttttac ccttttcttt taaacgattt tgtaccaaag ttatcatgat tttattacta
     6601 gctcttttgc tatctaacca aaaaatagct tcggctccac taagttctga tctttctata
     6661 cctaaatcaa tccaatttaa cactgcatca aatttagcct gattagctct ataaatatca
     6721 ccttttctaa ccttatgttc taataaaact ttaccgttag aaactatttt aaaagttcct
     6781 tcttctttag ccacaaaggt tttatcgtgc gatccatatt cttgagcttt tttagccatt
     6841 aaacctacat tagatacact gccaagtttt gaaggattta aagtaccatt tttatgcaaa
     6901 tcttcaataa ccgcctcata aatagttgcg taagtttgat caggaattac ggcatttgtg
     6961 tccttttcct taccttcctt atcccacaat cttgcgccat ttttaagcat tgcaggcata
     7021 gaagcatcaa cgataacatc gcttggaaca tgaagatttg taatgccttt atctgaattt
     7081 accatagaaa tatctgcaga tttagctaaa atttcattgt atttttttaa aatttcatct
     7141 tttttgcttg aattttcgat cttacttaaa agctcactta aaccattatt tggattaatg
     7201 cctaattttt caaattcatc ttgaaattcg ataaataatt ctttaaaaaa tacttttacc
     7261 gcataaccaa aaagtatagg atcacttact ttcatcattg tagcttttaa atgcaaagaa
     7321 aaaagcacat catcatcttt gcttgcttta atttcttttg cataaaattc ctgaagtttt
     7381 tgcacatcca taaaagtagc gtctaaaatt tcattttttt caagttttaa gccctctttt
     7441 aaaatttctt ttttaccatc aacgcttgta aattctatat tagccacaca atcttgatcg
     7501 attaaaaccg ctttttcatt agagaaaaaa tccccttctt tcatgtaaga aacacgagtt
     7561 tttgagtttg gattaaactc aaccacacga taaggattgt tttttgcata atcttttacc
     7621 gcttttgttg aacgacgatc tgaatttcct tgtcttaata caggattaac cgctgaacct
     7681 aaaacttttt gatattttgt tttaatttgc aattcttcat cattttttgg ctcatctggg
     7741 taatttggta acatgtaacc cttatcttgc aattctttaa tcgccgcctt aagctgagga
     7801 atagaagctg aaatatttgg ggttttaata agatttgcat ccgatctttt gacaagctca
     7861 cctaaaagtt ctaaagcatc ttcacatctt tgctcctctt ttaaatactc actaaaagca
     7921 gctaaaatcc ttccagataa agaaatatcc gaggttttta ctcctatatg tgccctactt
     7981 aaaaaagctt tcactatagg caaaaacgaa taagtcgcaa gagctggcga ctcatctgtt
     8041 aaggtataag taatttgcat ttttagtcct ttaaaatact tatttttatt ttcattttta
     8101 agtatattac aaataaaaaa aaatgcaaga gtaagtttaa agtttgtttt agttttcaaa
     8161 caaactttaa atatttttaa ttaagtaaat tagcaggaag ttgtatgata tttttaataa
     8221 gattaaaagg ggtttttagg gtatctgtta aaatttcggt atgaaattta gggtcatcta
     8281 tacttccatc tatttttaag tttgtgctaa tttcttgatt tttacctaaa attacataat
     8341 ttaaaattgg aaccttggat atagcttctg aagctgattt taaagtttta agctctaagc
     8401 taaaatccac tgtatttaat cttaaatttg ctgatcctaa accatatata tctacactat
     8461 cgccatttaa attaatagcc aaaacactta aaagatcttt ttttctatta aaaataatct
     8521 ttccatcata caagcttaaa cctttttgat taaaagttgg agatttaaac atcaataaac
     8581 ttggtacagt atcaataaag gaaataagct gatttacacc ttttaaatcc ttcacataag
     8641 tgtttttaaa atcgatctgt ccatcaaaat actccaatcc acttcctttt atacttaagt
     8701 taaacactcc atcttgaaca gcttgttttt gtaaaaactc atttaaataa ttatcatcaa
     8761 tattgctaac gtttaaattt acatcattag aagaataata aagttcaaat tttgcatttc
     8821 ctctagaacc tttaagatcc aaagcattgc cttttaaatc agcctctacc ctatcaaaag
     8881 ccaaagtttt attagaatct ggcaaaatta aagctacatt tgctccacca aaactaatat
     8941 tttgggtatt agtagaaata tcaaatgttg aatttgaaga gttggaacct tttctataaa
     9001 tataacttaa attttttaaa tgaatttctt tattattaga acttatttta gcacttgctg
     9061 tatcactttg agtatgaatt tccataatgc ccttattttt tacaatatca aagctatcat
     9121 tttcataagg agtttgaccg ttaataagta aattattttt aaaataagca tcattaacgc
     9181 ttgcattaaa atcttcaaaa tttaaagttt tataataaac atttttagca tcgataaacc
     9241 caaacttttt aagcaatgga gaaaatgaaa ataaaatctt aggattacta agattagcct
     9301 caagtccatc tttaaaattt aaaatcaaat tccactgagg aatgctaatg ttaacatttt
     9361 gcgaataatc taattttact tctacatttt gattttttaa atctaaaagc tctccattgt
     9421 caaaataaag ccttgaaatc tgagtattga aatttccttg ctgtttttgt aagtcaaatt
     9481 tagcattaaa atcagcttct aaaaagccat ttttaacact ggcattttct atatttaaat
     9541 cattttgatt taattttaca aatgcttttg taatattaaa atcagccaaa gaaatactag
     9601 cattctctaa agctaaaata ccactataag aaatttcacc cttatcatga aaatcaattt
     9661 taagctccaa atcactttta atttttccgc ttttttgata aaaaggtagt gaaaaatgat
     9721 aatcctctaa agctttagca agtttttcgt caaattttag attatcagac ttaatgcgca
     9781 aataaatccc aacttttttt tcatcaaaca aatcatatag ataaacctta ctagaactta
     9841 aatcagcacc attatagaaa gctttattaa agacaaaatc gagcttttgt ttgtttaaat
     9901 ttaaatcgag ttttggaatt tcaatagcat tcattttatc atccaagcga actttgacat
     9961 tattaacata acctgatgca ctaatattgt ctaaataata attatcttta gtaaaatcta
    10021 taaagccctg caaataatct aaatgataaa attctccctt agccctatat gctacccaaa
    10081 gatttaaact ctgcggaagt tctattcttt tattaactct tttaaaaatt tccgtaatat
//
LOCUS       DAPIWU010000063         9875 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.063, whole genome shotgun sequence.
ACCESSION   DAPIWU010000063 DAPIWU010000000
VERSION     DAPIWU010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9875
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.063"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            137..1543
                     /gene="aspA"
                     /locus_tag="RJ285_001223"
     CDS             137..1543
                     /gene="aspA"
                     /locus_tag="RJ285_001223"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDV7383992.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLGKEQI
                     DEILTPANMLNPHMEAKK"
     gene            1559..2899
                     /locus_tag="RJ285_001224"
     CDS             1559..2899
                     /locus_tag="RJ285_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDV7383993.1"
                     /translation="MDTIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVVLGLVLG
                     MKPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWL
                     LTILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSG
                     VLEPLGWNYPTLIGIWISTTFIACMLTAFIVSLITPMDLSKDSVYQERLKAGLVKDAG
                     AILHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAA
                     TLITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQ
                     TPAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALF
                     VLPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            3007..4368
                     /locus_tag="RJ285_001225"
     CDS             3007..4368
                     /locus_tag="RJ285_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HDV7383994.1"
                     /translation="MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVSIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4378..4746
                     /locus_tag="RJ285_001226"
     CDS             4378..4746
                     /locus_tag="RJ285_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDV7383995.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLVSDTRAKEFRLEIKAKN"
     gene            4770..5393
                     /gene="lpoB"
                     /locus_tag="RJ285_001227"
     CDS             4770..5393
                     /gene="lpoB"
                     /locus_tag="RJ285_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HDV7383996.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQIKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5476..6813
                     /locus_tag="RJ285_001228"
     CDS             5476..6813
                     /locus_tag="RJ285_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383997.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNVTNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLTNTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6823..8025
                     /locus_tag="RJ285_001229"
     CDS             6823..8025
                     /locus_tag="RJ285_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7383998.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDTNGKYTVNVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDFSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEAALK
                     QIANRIAGDILNAIYPLKVASVENNEVVFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKLSYAKITEGSVKVGDICRPLIGSNSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8184..8492
                     /gene="rplU"
                     /locus_tag="RJ285_001230"
     CDS             8184..8492
                     /gene="rplU"
                     /locus_tag="RJ285_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDV7383999.1"
                     /translation="MYAIIKHSGKQYKVSVGNELKLDHFEAESKANIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8503..8757
                     /gene="rpmA"
                     /locus_tag="RJ285_001231"
     CDS             8503..8757
                     /gene="rpmA"
                     /locus_tag="RJ285_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDV7384000.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8864..>9875
                     /gene="obgE"
                     /locus_tag="RJ285_001232"
     CDS             8864..>9875
                     /gene="obgE"
                     /locus_tag="RJ285_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HDV7384001.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDVQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVNLGEEFAEQITLNINELENYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEE"
BASE COUNT         3590 a         1330 c         1857 g         3098 t
ORIGIN      
        1 aaaatactta atttattgta tttgaaagta gttttcttat taaccaatta ttaactaaaa
       61 atgcaatatc attattttat gatttaaatc aaaaattttt gattttaaat taaaatactt
      121 ttatgaaagg ttcaaaatgg gaacaagaaa agaacatgat tttattgggg aattagaaat
      181 ctctgatgag gtttattatg gagtgcaaac ttttagagct gttgaaaatt ttgatatttc
      241 tcatgataga ttaaaagatt ttcctcgctt tgttagagct ttggctagag taaaaaaagc
      301 tgcagctatg gcaaatcatg aattaggtct tttggataaa aatatccaag atgcgattat
      361 taaagcgtgc gataaaattt tagaaggcgg gtattatgat caatttgtag tagatatgat
      421 ccaaggaggt gctggaacaa gtacaaatat gaatgctaat gaagttatag cgaacatagg
      481 acttgaactt atgggtcata aaaaaggtga ataccaatat cttcatccaa atgatcatgt
      541 taatttaagc caaagtacta atgatgctta tcctacagct ttacaccttg ccttgcatga
      601 ttatttaagt gatttggcaa aagctatgga acatctaaaa aaagcttatg agagaaaagc
      661 tgaagaattt aaagatgttc ttaaaatggg tagaacccaa ctgcaagatg ctgtacctat
      721 gactttaggt cgtgaattta aaacttttgc cgtaatgata ggtgaagata tacaaagagt
      781 attagaagct agaaaattga ttttagagat caatttgggt ggaactgcta ttggaacggg
      841 aattaattct catcctgatt atccgaaggt tgtagaaaga aaaataagag aagtgacagg
      901 ttttgaatat actgtggctg aggatttgat cgaggcgact caagatacgg gagcttatgt
      961 acaaatttca ggtgttttaa aacgtgttgc aacaaaactt tctaaagtat gtaatgactt
     1021 aagactttta agtagtggtc caaaatgtgg tcttaatgag attaatcttc caaaaatgca
     1081 accaggtagt tctatcatgc caggtaaggt aaatcctgtt attcctgaag tagttaatca
     1141 agtttgttat tttgttattg gagcagacgt aactgtaact tttgcttgtg agggtggaca
     1201 attgcaactt aatgtttttg aaccagttgt agcatatagc ttatttaatt ctgttgtaat
     1261 gctagaaaaa gcaatgtata ctttagctga taaatgtata gatggtatta ccgcaaatga
     1321 aaaaatttgt tcagactttg tctataattc agtaggtata gtaacagctt taaatcctta
     1381 tattggttat gaaaattcag cttctatagc taaagaggca atgaacactg gaaaaagagt
     1441 ggctgatatt gcgcttgaaa gagggctttt aggtaaagaa caaattgatg aaattttaac
     1501 tcctgcaaat atgttaaatc cacatatgga agctaaaaaa taatataaag gcttaaccat
     1561 ggatacaata atgataattt tgcaagtaat cgtccttctt ggggcgattt ttatcggtat
     1621 tcgcctaggc ggcattgcta taggctatgc aggaggactt ggtgttgttg ttttaggact
     1681 tgttttggga atgaaacctg gtaatattcc ttgggatgtt attttaatta ttgccgcagc
     1741 tattgcagca atttctgcta tgcaacaagc aggtggactt gattatatgg ttagggttac
     1801 agaaaaaatt ttaagatcaa gccctaaatt tataaattat ttagctccag cttgcggatg
     1861 gttgcttact atcttagcag gaacaggaaa tgcagtattt tctttaatgc ctgttgtagt
     1921 tgatgttgca aaatctcaaa atataaaacc tagtgttcca ctttcattaa tggttgtttc
     1981 ttcgcaaatt ggaatcactg cttctcctgt gagtgcagct gtggtttata tgagcggggt
     2041 tttagaacca ctaggatgga attatccaac tttaattgga atttggatta gcacaacttt
     2101 tatagcttgt atgcttacag cttttatagt gagtttaatc actcctatgg atttaagcaa
     2161 agatagcgtt tatcaagaac gcttaaaagc aggacttgtt aaagatgcag gagctatttt
     2221 acatggtgaa gataaaccag gtgctaaact ttcagtggta attttcttga tcactgtttt
     2281 ggcagttgta ctttatgcaa ccgcaatttc aagcaatatt aaatggattg atcctgttgt
     2341 ggttccaaga gatgcagcta ttatgagctt tttacttact gcagcaactt tgatcacttg
     2401 gctttgtaaa gttgaaccag gtaaaattct tgataccagt gtatttaaaa gtggtatgac
     2461 tgcttgtgtt tgcgtttttg gtgtagcatg gcttggaaat acttttgttg caggacacga
     2521 agcttctatt aaagaagtag caggcgactg ggttaaacaa acccctgcta tgttagcagt
     2581 tgcatttttc tttgcaagca tgcttttata ttctcaagca gcaaccgcaa aggccattgt
     2641 acctgtaatt atcaccgctt taggaatttc agcagcaaat ccgcatgatt cttatatgct
     2701 tgtagcttgt tttgcagcag tttcggcact ttttgtgctt ccaacttatc caaccttact
     2761 tggtgctgtg caaatggatg atacaggaac gactagaatt ggtaaattta tatttaatca
     2821 ctcattcttt ataccagggg ttttagctat tgcaattgct gtagcattag gctttgtatt
     2881 agctcctatg cttatttaaa tcaaacccta ggtttttctc tcctagggtt aaaatttttt
     2941 cattagtttt taagtatata ctacgctata atattcattt ttaattttct ttaagaaagg
     3001 aatttaatga agataaaagt tgggttgatt ttttcaggta ttgcttgcct ttttttaaca
     3061 gcttgtgtta atcaggttaa acaaaataca acatttgaaa atactttaac acaaaaatat
     3121 tgtggtgatg attttttcaa tcaaaattta gaaaaaatta aaaaaaatga tgatgtcatt
     3181 tatacaggat taaatgcagg tttgattgct agaaattgtg gtgattttaa taaaagtaat
     3241 gtattttttg atgctgtaga agaatcttat aaatatgatg tggatttaga aaatgtaagc
     3301 cctaaagcag ctaaatttat tggtacaacc ttgcttaatg ataatatagt agattatgat
     3361 ggttctttat atgaaagaat tatggttaat atatataaag ctctaaacta tatggaagaa
     3421 gatgattatg aaaatgcaag agttgagttt aatcgtgctt taatgcgtca agataaggca
     3481 aaagaatatt ttgctaaaga aattgaaaaa aatcgtgctg atttagataa ggcaaaagaa
     3541 gataaaaatt atgataaaaa tatgaatgaa aattcaaaag ttatagaagc gcaatatgat
     3601 aacttattta aagaatttga tacaacaaaa aatttcataa atccttatgc gacttatctt
     3661 gcttcaatat ttttctttat ggataaagat tatagaaaag ctgcagattt atttagagaa
     3721 gtatctatta tttatccaaa aaacaaaact atcaaaaaag aggctaaaat ttttaaagaa
     3781 tatgccacaa aaataaaagt taaaaaagct aaaaaatatg tttttgtagt ttatgaaaat
     3841 ggatttggtg tagttaagga tgaatttgct ttaaccttac cttttatagt ggataaaaaa
     3901 attattagca caaatattgc tttacaaacc ttaaaaaaaa gggaagcttc ttttgcaaat
     3961 ttaaatataa atggtcaaaa tacaaatgat tttgtagatt tagacaatat tgtcgctact
     4021 gaatttaaaa taaatatgcc tgcaatgatt gctaaagcct tagctcaaac tataattaaa
     4081 accactttaa atgtagctgt tgcaaataat gactctacag gtggatggct aagtcttgca
     4141 acagcagtag caactgctgc aaccaataaa gctgatgtgc gttcttggag aggtttacca
     4201 aaaagtattg ccatagcaac aatagaaaac gacggaaatt tagaaatcaa agatccacaa
     4261 ggcaatattt tgtttcaaaa atcattggat aaaaataaaa atgctcttgt gatagtgcgt
     4321 tcttttgctc cgtatttacc cgcaagtgtt gctatcatgg aaaaataagg ctaaaagatg
     4381 aaaaaaaata ttttatttat tttaatgttt ttacttagtg cttgtgcacc aagttatcaa
     4441 ataaattcaa atcaaaatac tgtaatttta ggttcaaatt taccaaaaag tttagtaaaa
     4501 caatttcaaa agcgtataaa tagcaatggt tatttagaat ttgaagtgat tttgcgcagt
     4561 acttttgcta aagatgtaat ttataaagta gattggttag ataaagatgg ttttgtgcta
     4621 agagatgttt taaatgagga ctatcaagcc cttagaattc cagcaggaca agaggtaatt
     4681 cttcgtaaac ttgtatctga tacaagagcg aaggagttta gattagaaat taaagcaaaa
     4741 aattaatctc attttaggaa ggataaatca tgaaaaaaac aaaaatttta ggaacagctc
     4801 ttattggagc tttgcttttt agtggttgtg cgcaaacagc ttatacagat ggaaaggcaa
     4861 gtcagataaa aaaaggcgat gctttaacct tgggtcttga tagacaagat tttgaaagtg
     4921 cagctgaaac tatgataaat agtatgttaa gcgatcctgc ttttgcaaat attaaaccag
     4981 gtacaagaaa ggttattgct attggtaggg ttgtgaatga taccccgcaa agaatcgata
     5041 ctgaaaaact caccgcaaaa atcacttctg cattaagaaa atcaggtaaa tttgttctaa
     5101 cttcagcagt tgctgcaggc ggagcacttg atagcatgag tgaagatgta agagaattaa
     5161 gagataatga tgagtttaat caaaaaacca tagcaaaaaa agggacattg gtatcgcctg
     5221 atttttctct tgcgggtaaa attagacaag ataatgtaaa acttagcaat ggtaaaactc
     5281 aagtagaata ctttttcttg ttaagactta ctgatttaac atcaggttta gtttattggg
     5341 aagatgaaca aactattgat aaaaccggtt ctagtaaatc agttacttgg taaaataaaa
     5401 attaatttat gaataaaatt ttttagctca agtgtttagc ttgggctttt tttatgattt
     5461 ttaaaaggat acgaaatgaa aaaaatatta tttatcggct ctttagttat ggcaagttta
     5521 ctttatgcac aaggttccca gcctgtagaa attacacaac aagatataaa tactcaaaat
     5581 gaaatgtctg acgcaagtac taaggatatt accccaaaat caattgaaga tttttttgaa
     5641 gaatttgcgg ataatttcgg tatagaatat ggtataacca aagatggaaa aactttttat
     5701 acaggaaaaa gtactgttgc tgtaaatgat actgatccac aatttgcaca agctttacaa
     5761 aatgcttacc aaaaagcaat gttaaatttg caaagcgaat ttataagaga tgcttttgga
     5821 agaattgcta caagcaagat tcaaaattat gaagcagaca attctactaa tgctaaggaa
     5881 tttgatgaat tgccaaaagg tgataaggtt gatcaaattt taaataaact tacacaatta
     5941 gctggtgctc agcttgataa ggcattaaaa gatttaggta tagatacaaa ttctttaagc
     6001 gaagacagaa aaaagacttt attaaagcaa gaatttctta ataaaactat gacaaatgcc
     6061 ataggttcta tgagtggact tgttcctgtg caaactatag ttacacaaag aagaggtgag
     6121 tatgatgtag gtgttattgc tgttatttcc aataaaactc gccaattagc aaaagatatg
     6181 gcactagcaa gacagagtgc tattaagggt aaaggcaagg caataagtga gtatctgcca
     6241 aaagatacaa aaggcttttt aaatgaatat ggaattcgct tagtttatga tgaaaatggt
     6301 gcacctatta ttttaagtta tggaaactgg ggttatgtag cagatcctag taatgctaaa
     6361 aaaacaaata ttttagaaga tagagccaaa gaaacagcac ttactatggc tgatgctgct
     6421 attatagagt ttattaatac aaatttaagt cttaaagatg aaagaacaac tggtgatact
     6481 tacgaggaaa tcatcaaaca aagtattaat gttaatgata gttccactca agaacaaact
     6541 caaaacgtaa caaatattat tgataaagta aatagtaaaa taaaagcaag cgcaagcggt
     6601 aaaattcgtg gtattcgtac tcttaaaaaa tggagctata caagtgaaaa tggtattgaa
     6661 catgtaggag ctgtgagatt ttattcttat gaaaatttaa ctaacacaaa tgaggcttta
     6721 aattcaaagt caaatgcaac aaaaaatgaa gctaaaaaat cttctagcat acaaagaagt
     6781 tctaatgttg taaatagcat ggatgatttt taaaggtaaa agatgaaaat aattaaaatt
     6841 ctttttttag gcttattttt aagcctaagt cttaatgcta aagttataac cacaacttca
     6901 acaaaatcaa gcacaggtga aggcacaggc ttgaccaggg aagatgcgat aaacaatgcc
     6961 attatagagg ctataggaaa aatgagcgga gtaagcatca attctcttaa gaaatctaac
     7021 actagcgttt caactgataa ttcaggttca aacatacaag ataattacag cgagcaaatt
     7081 tcaaaagcca ccaaaggtag agccgatact tatgaaatca atagtgttga acaagataca
     7141 aatggtaaat atacagtcaa tgtaacgatt tttaaaacca caacaacaaa aaagtatcaa
     7201 gctccaggtt taagtgcaga taatagaaga agtattactg tttttgattc tactccagat
     7261 gctgcaaaaa gaggcatagg ctcagcttta caacaaaaaa tcatttctga tttattgcaa
     7321 agtcgtaaat ttaatgtttt agaccgtgat tttagtggct attatgaaat ggaaaaagct
     7381 ttaatcaaaa gtggtgacgc agctagtgat gaagtttata aacttaaaaa tgtgttagca
     7441 actgattata ttttattgtt ttctatttca ggacttgaag gtaaacaaaa aacaagcaat
     7501 ttaacaggaa aaagcaaaac tgaaattgaa gttatcgtag attatcgtgt gcttttattt
     7561 gctacaagac aaattaaatt ttctaatact ttaagtatga aagtcaatct taaagacaat
     7621 agtcttagcg ccaatgaagc tgcactcaaa caaattgcaa atcgtattgc aggagatatt
     7681 ttaaatgcaa tttatccttt gaaagttgca agcgttgaaa acaatgaagt agtattttct
     7741 caaagcttaa atcaaggtga tgtttatgaa tgttttgctc ttgggaaggt tataaaagat
     7801 acttatacaa aagaaaatac aggaagagta gaaagcaaaa caggaagtat tgaaatcact
     7861 cgcacaagcc ctaaactttc ttatgcaaaa atcacagaag gtagtgtaaa agtaggcgat
     7921 atttgtagac ctttaatcgg tagcaatagt ggaaatggct acactatagg tcgtgatgca
     7981 aattatcaaa cccaagaagg tggcggagta aatctaggct tttaaatttt tagagtttga
     8041 tttttctcaa actctaaatc ctttcttaaa ttcatcaaaa attaaagaaa aattttgtaa
     8101 aatcgaaatt ttattaaacc actaaagctt ttaaatccgt tattgcggtg ctttatggta
     8161 ctaccaattt ataaggaaaa gcaatgtatg ctattatcaa acacagcgga aagcaataca
     8221 aagtaagtgt tggcaatgag ctaaaactag atcactttga agctgaaagc aaagcaaata
     8281 ttgaagtaag cgaagttctt gctatcaatg ataaagaatt aaaggtaggt gcacctttcg
     8341 tagcaggtgc aaaagttgtt ttggaagtga tcaatcacgg aaaagataaa aaagttgtga
     8401 tttacaaaaa aagacgcaga aaagattcta aactcaaacg cggttttaga agacaattta
     8461 ctcgcgttgt agtaaaagat atcaaagctt aaggagtaaa gaatggcaca caagaaaggt
     8521 caaggttcaa ctcaaaataa ccgcgattcc ataggtcgtc gtttaggtgt taaaaaattt
     8581 ggtggcgagt ttgttagagc tggaaatatc atcatccgcc aaagaggaac tgcaactcat
     8641 gcaggtaaca atgtaggcat gggaaaagat catactatct ttgctctaat tgatggtttt
     8701 gtaaaattcg aaagaaaaga caaagataga aaaaaagttt ctgtatatcc tgcataagtt
     8761 tttaggacgc tttttagcgt cttgaaaact ttaaatttat aaatttaact tcttttattt
     8821 actcaaattt agctttataa atttaaagtc aaaggcaatt taaatgttta ttgatagtgt
     8881 taaaattact ttagcttcag gcgatggtgg caaaggtgct gtaagttttc gccgtgaaaa
     8941 acatgttcca cttggtggcc ctgatggagg agatggtgga aatggtggtg atattatttt
     9001 cgtatgtgat aataataccc acactcttgt aaatttcaaa ggcaaaagag aattacgcgc
     9061 gcaaaatggt gctggtggaa tgggacgcaa taaaaatggc aaaaagggtg aaaatttaga
     9121 acttatagtg cccgaaggaa cgcaagttat cgatgtacaa accaatgaaa ttttacttga
     9181 tcttaccaaa gaaggacaaa gagagctttt tttaaaaggt ggaaaaggtg gacttggcaa
     9241 cacccatttt aaacacgcca ccaatcaacg ccccgattac gcacaacctg gtataaaagg
     9301 agaaagtcgc ttggtcagac tcgaacttaa acttattgcc gatgtagggc ttgtgggctt
     9361 tccaaatgtg ggaaaatcta ctcttataag cgttgtttca aatgcaaaac ctgaaattgc
     9421 aaattatgaa tttaccaccc ttactccaaa acttggactc gtagatgtag atgagtataa
     9481 ttcctttgtt atggctgata ttccagggat tatcgaagga gcaagtgggg gtaaaggctt
     9541 aggacttgcc tttttaaagc acatagaaag aacgagcttt ttacttttcg tgctagatcc
     9601 tatgaggcaa atgcctttaa aagaacaatt tatagtacta agaaaagaac ttgaaaaatt
     9661 ttccaatgaa ctttttgggc gtaaatttgg catcatgatt tcaaaaagtg atagtgtgaa
     9721 tttaggagaa gaatttgccg agcaaattac tttaaacatt aatgagttag aaaattatct
     9781 caaagaaata aataacccac aaagtttttt aatcaaagtt tcaagccttg aaaaaacagg
     9841 acttaaagaa cttaaattca tgcttttaga agaaa
//
LOCUS       DAPIWU010000064         9524 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.064, whole genome shotgun sequence.
ACCESSION   DAPIWU010000064 DAPIWU010000000
VERSION     DAPIWU010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9524
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.064"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..554
                     /locus_tag="RJ285_001233"
     CDS             <1..554
                     /locus_tag="RJ285_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384002.1"
                     /translation="SVVNKKGGVGKTPFAFSIAKDLEYFLQSNDNSIIEKIYPEKAKI
                     LPTPKKIDNCVYDFGGFVEKGVLDIIKESNKIIIPCTSNYNSLLRTLETLNEIGNDDR
                     VCILVTDYRDEKEKRQICETLESNFTDLNLFFFKFSKIIENSMSSGASFTELYNENNL
                     SRLSYTNFFNEYQRLLDFIRKDK"
     gene            557..823
                     /locus_tag="RJ285_001234"
     CDS             557..823
                     /locus_tag="RJ285_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384003.1"
                     /translation="MEKKPFTIAEALNSETSSQKTYSKADKKSAGRKTIDQKLRRDNL
                     VVCRLNEQEMEILKKLMDLDLVSEYGTYIRKLILKEARALNINS"
     gene            870..6668
                     /locus_tag="RJ285_001235"
     CDS             870..6668
                     /locus_tag="RJ285_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002817902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDV7384004.1"
                     /translation="MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEH
                     REVTDNIERTSISSNTPSVDRQENSTIQLDNTREMGRVLSEHNQESRNVRSNDTSIAT
                     NTNGISNLGEQRSRQEERTGANRYGDTSRRANKSQSIHSDRTPNLFSFISRNDDERQG
                     TDAARSYNQQSVLETAARNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIK
                     LSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYAEYEK
                     AKTSTLDAFYTPKIIIDTIYQGLNQLGFNNDDHTKEIFEPSAGIGSFLSYAKNYSDKY
                     HFTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDT
                     TLNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNYIAEQATFLGAVRLP
                     NNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDF
                     RINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQET
                     KIKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIRSDDELVFSKPVLNEH
                     DTRRIKKLIALRDQFNTLIEYEKNESSDLLVENQRKYLNKLYDEFVAKEGYLNRDANK
                     KAFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIK
                     ISTPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAE
                     KYLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKY
                     YKQFIEETLQITPKDYDLFLMEKTGEWSLKGFGHSLSPYIRSQYATEKIGCFDLFEHG
                     LLRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLEN
                     IYNERFNTNIEPQYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKT
                     LVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNRE
                     KFFSKIATNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKQNDDNVMRY
                     SVKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGD
                     ISGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILK
                     EKGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTN
                     NDIMKYQKDFVPKLYNDKPINIVAPRSEEIAEFIGIQDENGRWNEGSIVWRMEHQQDD
                     ITRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLI
                     FCDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKF
                     DVYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGT
                     NVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDA
                     RMWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSD
                     LRQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKY
                     YINDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISG
                     ERTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDL
                     EKFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQ
                     KNYKSDFVPKSPKILEDLNKQSKTIKENEIGY"
     gene            complement(6760..7704)
                     /locus_tag="RJ285_001236"
     CDS             complement(6760..7704)
                     /locus_tag="RJ285_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7384005.1"
                     /translation="MFKEVCNTLRMSRTELAEKLGLSKTTIDSWSDSSRISKTAKVAL
                     ELMLENYKLRSTIKNFQDGFASLNSYNLGENMMNNVFSKDHNDLINRINHIFNELKLS
                     EITCSRAMGESNYAKINQILNFKMYPDFDFLEKFALRFKINHNWLLTGEGSPFASDLI
                     KSNFNSQFIKEAEEFDRIYIVTSKNNLDHTRIIVINRNNEFGLYQTYFCIGSNFIMEA
                     RECSDLCDLYEFYQKFKYKISCLEFNEDDYRKLLSLKYYPKNILDRGQTSYMLFDLFD
                     LREDDKERYGEFFEKCINIIKSTLKDRENRRIERNGIN"
     gene            complement(7834..9222)
                     /locus_tag="RJ285_001237"
     CDS             complement(7834..9222)
                     /locus_tag="RJ285_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HDV7384006.1"
                     /translation="MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYAKDIK
                     TGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDE
                     ILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMY
                     PNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAK
                     ATNKKQREVEINQEFSVKLNANNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSY
                     YVSYKTKKGITTIWGQDLERIVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEV
                     VKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQEL
                     GNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNRLQQGERGRSDNILRW
                     TSVRNNEIKRDG"
     gene            complement(9222..>9524)
                     /locus_tag="RJ285_001238"
     CDS             complement(9222..>9524)
                     /locus_tag="RJ285_001238"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384007.1"
                     /translation="EISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDKFIKTRTEI
                     NAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGTIIEKNNERI"
BASE COUNT         3687 a         1305 c         1381 g         3151 t
ORIGIN      
        1 tatctgttgt aaataaaaaa ggtggtgttg gaaaaactcc ttttgctttt tcaattgcta
       61 aagatctgga atatttttta caaagcaatg acaattctat tatagaaaag atttatcctg
      121 aaaaagcaaa aattttaccg actccaaaaa aaatagataa ttgcgtttat gattttggtg
      181 gttttgtaga aaaaggggta ttagatatta ttaaagaaag taataagatt attattcctt
      241 gcacgagtaa ttacaattct ttacttagaa cattggaaac tttaaatgaa ataggtaatg
      301 atgatagagt ttgtatcttg gttacagatt atagagatga gaaagagaaa aggcaaattt
      361 gtgaaactct tgaaagcaat tttacagatt taaatctctt tttctttaaa ttttcaaaga
      421 taattgaaaa ttctatgagt agtggagctt cttttactga actttataat gaaaacaatc
      481 tttcaagatt aagttataca aattttttca atgagtatca aagactttta gattttatta
      541 gaaaggataa ataataatgg aaaaaaaacc ctttacaata gcagaagctt taaactctga
      601 aacaagctct caaaaaacat atagtaaagc tgataaaaag tcagctggaa gaaaaactat
      661 agatcaaaaa ctaagaagag acaatttagt agtttgcaga cttaatgaac aagaaatgga
      721 aattttgaaa aaattaatgg atttagattt agtaagtgaa tatggtactt atataagaaa
      781 attaatctta aaagaggcac gagctttaaa tattaatagt taaaaatgtt aaaatatcct
      841 tgcaaaaaac aaaaattaca aggatacaaa tgagtaaaaa aacaaaaaga caaattgaag
      901 atgaaaaaga ttatggcggt cgaagtttat ttgatctaat cgaattagaa ttttcacaag
      961 gagaagaaaa tgagcaacaa aatagagaat tatccgaaca tagagaagtt acagacaata
     1021 ttgaacgaac tagcatttca tcaaatacac caagcgtgga tagacaagaa aattccacaa
     1081 tacagcttga taatactaga gagatgggca gagttttatc cgaacacaat caagaatcta
     1141 ggaatgtcag atctaatgac actagcattg ccacaaacac aaatggaatt agcaatcttg
     1201 gagagcaaag aagcagacaa gaagagagaa caggggctaa cagatatgga gatactagca
     1261 gaagagcaaa taaatctcaa tcaatacata gcgatagaac cccaaattta ttctccttta
     1321 tttcaagaaa tgatgatgaa agacaaggaa cagatgctgc aagaagctac aatcaacaat
     1381 cagtattgga aactgcagca agaaatgatg gatatgaaag aagaagcctc aaatctgggc
     1441 aaaaattaga ttttgtaagc gatgatgaaa tctatctagg ttctttaaaa gatagatttc
     1501 aaaaaaacct tcaagccatt aaactttcaa aaactattga acaagaaaat cgctacgcta
     1561 ccaaacaaga acaagaaatt ctaaataaat tttcaggatg gggcggtatt cctcaagctt
     1621 ttgatcatca gaataaagaa tgggaaaaag aatttaaaga acttattagc acacttgatt
     1681 atgcagaata tgaaaaggca aaaacttcaa ctttagatgc tttttacact ccaaaaatta
     1741 ttatcgatac aatttatcaa gggcttaatc agctaggatt taataatgat gatcacacca
     1801 aagaaatatt tgagccaagt gcaggtatag gctctttttt gtcttatgca aaaaattata
     1861 gcgataaata tcattttact tgcgtagagc ttgatactat aagtgcaaat atattaaagc
     1921 atttacaccc aaatcaaaca atttataata aagcatttca gcaccattta tttgataagc
     1981 catacgatgc ttttataggt aatccacctt ttggtcaaaa aaagatttta gatttaaatg
     2041 atactacact taataaaaca agtgtgcata attattttat cggtaacgca attaaaaatt
     2101 taaaagaaga tggaattgct gcttttgtag tatcaagtta ttttttagat tctaaaaata
     2161 gcacaataag aaattatata gccgaacaag caacattttt aggtgctgta agattgccaa
     2221 ataatgcttt taaaaaacga gctaatacag aagttactac cgatattatc ttttttaaaa
     2281 aaggtaaaga tttaaatata gataaatctt ggctggaaag cgtagaatac tatgacgatc
     2341 gttttgatga agctgaaaaa agaggtatgc accctgatgt ttttaatgac tttagaataa
     2401 atgagtattt taaaaataat ccacaaaata tcttaggaaa aatgaatatt aaaagctctc
     2461 aatatggtta tagtttagaa tgcttggatg atggaagaga tttaaaaatc gctttagaaa
     2521 attttacaaa aaccttacct aaaaacattt ataaatatca agaaacaaaa atcaagctat
     2581 cttattacag gattgataga gaatcgcctg aatacgaaaa atatagcaaa actctaagta
     2641 agttaaaaga tggaaattat tttgaataca ataatgaaat ctacatgaaa atcagaagcg
     2701 atgatgagtt agtcttttca aaacctgttt taaatgaaca cgatacaaga agaattaaaa
     2761 aactcattgc tcttagagat caatttaaca ctcttattga atatgaaaaa aatgaatcta
     2821 gcgatctttt agtagaaaat caaagaaaat atctaaacaa gctttatgat gaatttgtag
     2881 ccaaagaagg atatttaaat agagatgcaa ataaaaaagc ctttagagaa gatgtggaag
     2941 caaacaaaat tttggcacta gaaaaaaatt atagcagtgg tatttcaaaa agtgtagctt
     3001 taaaagaagg tatagatcct attgcaccaa gtgcaacaaa agcagatatt tttttcaaaa
     3061 gaactataaa tgcacaaaaa gaaattaaaa tctcgactcc aaaagaagca ttaattgcta
     3121 gtatcaatga atatgggaga attgatttaa aatttttaga aacgaattta aatcagcctt
     3181 tagaagaaac ccttaaatct ttagagcaag atagattaat ctttaaagat cacaaaaatc
     3241 ctgcaaatta tgttttggct gaaaaatatc tttctggcaa tgttaaagca aagcacaaag
     3301 aagtaaaaaa attagtagaa gatggcttta atgaatttgt taataattta gaaagcttag
     3361 aacaagtctt gcctaaagat ttaaaagcgg ttgatatttc aataagctta gggacaacat
     3421 ggatacctat aaaatattac aaacaattta tagaagaaac cttacaaatt actcctaaag
     3481 attatgattt atttttaatg gaaaaaacag gcgaatggag tcttaaaggt tttggtcatt
     3541 ctttaagtcc ttacatcaga tcacaatatg ctaccgagaa aataggttgt tttgatttat
     3601 ttgagcatgg attattaaga aagcctattc gcatttatga taaaaaacta gatccatcag
     3661 gaaaagaaat cagagaatta aatcctaaag aaactgcaat cgctaattct aaattagaaa
     3721 atttaaaaaa tgaatttata gaatggattt ataaagacta tgatagacgc acagatttgg
     3781 aaaatatcta taatgaaagg tttaatacaa atatagaacc acaatacaat ggagagcatt
     3841 tagaacttcc aaatttcaat gccaatatca aactcaaaaa acaccaaaaa aatgctatat
     3901 atagggctat tcaagaaaat agtattattt ttgatcatca agtaggcgct ggaaaaactt
     3961 tagtggcaat ttgctctgtg atggagcaaa aaagaatggg gcttttaaat aaacccttaa
     4021 ttgtagtccc taatcattta gcaagacaat ggaatgatga gttttatcac gcctatacaa
     4081 atgcaaacat tttagttgct acaaatgatg atttaaaaaa agataataga gaaaagtttt
     4141 tttccaaaat tgcaacaaat aattttgatg ccatcattat gacacactcg caatttaaat
     4201 taatccccgc accttatgaa gttatcaaaa aacaatatga agaagatatt aatatcttag
     4261 aacaaacatt agaaaaaaaa caaaacgatg ataatgttat gcgatattct gtaaaagact
     4321 tagaaaaacg cattgaaaat tttaaggtga aattgagtga tttgcaaact acacataaaa
     4381 aatctaaagc aatagatttt tcagaattag gaattgatgc attaattatt gatgaagcac
     4441 atgagtttaa aaatttactc attacaactt caatgggtga tataagtggt cttggcaatt
     4501 taaaaggctc acaaaaagct tatgatcttt attctaaaac acaatatatt cacgagcaaa
     4561 ataaaaaact ctatttttta acaggaacgc ctataagcaa ttcaattaca gaactttata
     4621 ctttgcaaag atacatacaa ccaaatatct taaaagaaaa agggatacaa gcttttgatt
     4681 cttgggcttc tacttttgga gaagttacaa acgcttggga gcttgatagt tctggaataa
     4741 attataaaat cgttgcaaga tttaacaaat tcaaaaatgt tcctgaactt tctaccatgt
     4801 ataaaagcgt ggctgatatt gtaacaaata atgatattat gaaatatcaa aaagatttcg
     4861 tgccaaagct ttacaatgat aaacctatta atatcgttgc tcctagaagt gaagaaatag
     4921 cagaatttat aggcattcaa gatgaaaatg gaagatggaa tgaaggctct attgtgtgga
     4981 gaatggagca tcaacaagat gatattacta gaaataactt acttgcttgt accacagatg
     5041 ctagaaaagc tggacttgat tttagactta ttaatccaca ttgtgatgat tatgcaaatt
     5101 ctaaaattaa taagcttatt gaaaatgttt ttaatgagta taatgcttgg aatgatgata
     5161 aaggcacaca attaatattt tgtgatttat ccactccaaa acaacactca caaaaagttg
     5221 ctctaaatgg caatattgct acaccaaatt taaataaaga agaatttgtc aatattaatg
     5281 aaacaataga acaaacagaa gaagagaata gcaaaagcct tgatgaactc ttagcagaac
     5341 aagcaaaatt tgatgtatat actgatatct taaaaaaact tgtcgcaaaa ggtattccac
     5401 aaaatgaaat tcgtttcatt cacgatgcaa aaacagactt acaaaaagga cagctttttg
     5461 cagatatgaa ctcaggaaaa gctagaattt taattggatc aacgcaaaaa atgggtgctg
     5521 gaacaaatgt gcaaaaaaga attgtagcct tacaccattt agattgccct tggcgtccga
     5581 gcgatttaga acaaagaagc ggtagggtta taagacaagg caatgaactc tttatgagag
     5641 atccacaaaa ctttagagta aaagagttta gatatgcaac tgaaagaacc tatgatgcta
     5701 gaatgtggca agtcattgaa agcaaagcaa gatccataga acaatttaga aaagctggtg
     5761 ctgatgtaag aaccttagaa gatgttacaa gtggtgcagc tgatgctgca gaaatgaaag
     5821 cagaagcaac aggcaatcca ctcattttac tacaggtgca attaaatagt gatctaagac
     5881 aagaagaaat gctttatagt ggttataaaa gacaaataca caataatgaa gaaagtctta
     5941 taactaatct ttcaaagatt gaactactaa aaaaagatat agctaaaatg gaaattttaa
     6001 attcaatcat caaagaaaac aatagcgagc attttcaagg aaagtattac attaatgatg
     6061 atgaaaaaga tttcattgtc tttaaaaatg atacgagtga tctaaacaaa agcagacaag
     6121 cagaacttga aagaaatttt gaaaagattg tcaaaacaat agctgatgac tatcaaaaag
     6181 aatataaggt tttagagttt aaaggactgc ttataagcgg agaaagaaca gatttaaaca
     6241 ctcttaattt ttatgtgagt actactgatg gtaaaacaat aatcgagcct gaaaatttga
     6301 tttataaaag agatgaaaaa acttttttta aattggaaag ttatgtaaat tttggtggtt
     6361 ttgtaaagag attaaacaat ttttataatg acttagaaaa atttactcaa ctcaataaaa
     6421 ataagataga aaatcttgaa aaagaaattg tggagctaaa aagcattaca ggagataaca
     6481 ctccaaaata caaaagaaag gattatttag aggcattaag agaagacaat cgcattatca
     6541 tggatgaaat agaaaaaatg agtaagcaaa aaaactacaa aagtgatttt gtgccaaaat
     6601 ctccaaagat tttggaagat ttaaataaac aaagcaaaac tataaaagaa aatgaaattg
     6661 gctattagta attacttaaa gttttttatt taatagcgtt catgacaaac cttaactata
     6721 atttctaagt ctagttaatt agacttagaa tattaaaaat taattaatac catttctttc
     6781 tattcttcta ttttctctat cttttaaagt agatttaata atatttatac atttttcaaa
     6841 aaattcacca tatctttctt tatcatcttc tctcaaatca aacaaatcaa aaagcatgta
     6901 agatgtttgt cctcgatcta aaatattttt tggataatac tttaaagata aaagttttct
     6961 gtaatcatct tcattaaatt ctaagcaaga aattttatac ttgaattttt gataaaattc
     7021 atataaatca caaagatcgc tacattctct agcttccatt ataaaattac ttcctataca
     7081 aaaataagtt tgatataaac caaattcatt atttcgattt attacaatta ttctagtatg
     7141 atcaagatta tttttagaag tgacaatata aattctatca aattcttcag cctcttttat
     7201 aaattgggag ttaaaatttg atttaataag atcacttgca aatggagagc cttcccctgt
     7261 caatagccaa ttatgattga ttttaaatct taatgcaaat ttttctaaaa aatcaaaatc
     7321 tggatacatt ttaaaattta aaatttgatt gatttttgca taattacttt cacccattgc
     7381 tcttgaacaa gttatttcac ttaattttaa ctcattaaag atatgattaa tcctattaat
     7441 taaatcatta tgatctttcg aaaaaacatt attcatcatg ttttctccta aattatatga
     7501 gtttagtgaa gcaaatccat cctgaaaatt cttaatcgta cttctaagtt tataattttc
     7561 aagcattaat tctaaggcta ctttagctgt tttggatatt ctcgaactat cactccaaga
     7621 atctattgtg gtttttgata atcctaattt ttcagccaat tctgtcctac tcatcctcaa
     7681 agtgttacaa acttctttga acataaaaaa actccttttg gaaaataatt tttgaaatta
     7741 aagcataata aaataaaaaa gtcaagtata tacatattac ataatatttt atatttttta
     7801 tgtaatataa tctaatatta attctcttat aaattatcca tctcttttaa tctcattatt
     7861 cctaacactt gtccatcgca agatattatc ggatcgtcct cgctctcctt gctgtaaccg
     7921 attgagtgca ttgatgtgca aaagcatttg agttcgtttt gtgttatgaa ccataggctg
     7981 tttggacaat attcgcatag agtttctttc ttgggcagtt tctcttcgga tagttgattt
     8041 attaccgagc tcttgtaaga ctctctgtct atattgtttt gtataatctc tctcattatt
     8101 cactccttta tcttgtataa ttttatattt ttttgttgtt ttggctttgt tgatctgttt
     8161 taaatctttc tctctaccta ttactgatac ttcccaaata ggttttttaa gtgttttaac
     8221 aacttcttgc cacttgttat taatttttgc ctttcttttt atctcatatt cttcttgccc
     8281 tactatttta aatcttgcat attcacccct taaaacttta ttttctctca caatcctttc
     8341 taaatcttgt ccccaaattg tagttattcc ttttttggtt ttatagctca cataataact
     8401 ttttttggca tttttatctg tgctaaattg atagtttgct tctccgaaat ccataacttg
     8461 ataatagtgc atttttattt ttggtgcttg attaatctca ttatttgcat ttaatttaac
     8521 tgaaaattct tgatttattt ctacttctct ttgcttttta tttgtagcct ttgcttcaac
     8581 tcctaactca tttaatgctt ttgcaaattc tgctcttaaa tttgctaaat ctgctttttt
     8641 tggattaatt cttttgccat ttttatccgc aactttcaag caaacatggc aatgcggatt
     8701 atccgtatca ttatgaaaag caactacaaa aaaattattt ggatacattc tttttaaagt
     8761 agtaattaca gcttgttgta atttttcttt tggtgttgta gaatgttctt tcatggaaaa
     8821 aaccatatta atggtatgtc ttttttcttt agcaccttcc ttatataatg gaataggaga
     8881 tccttcattt ttgaaaattc ttttaacttc taaaatctca tcttctcccg catatctatc
     8941 aaaatcgttt gtaattaatt ctacatttcc atcacgagaa atataatcaa gatgttttga
     9001 aagtgcttga gaatttttag aacctgaagt aatttttaca acgacttctg tattttttct
     9061 aaacatattt ttactaacaa gcttacctgt ttttatatct ttggcgtatt tatctctatt
     9121 tttattgatg taatttagtg gtagctttga agcattttct attttagtaa aaactttttt
     9181 agcaattatt tcatcatcaa atattcttat actacgcgac attaaattct ttcattattt
     9241 ttttctatta tagtcccaag ctgatcggat aatatatcaa ttttatctct aatattatcc
     9301 atagttttat ttaaattatt ttcattaatt ttgacagaat ttccacttct aagaatcttc
     9361 aataattgat atatattttt acctattgca ttgatttctg ttcttgtttt tataaactta
     9421 tctatttcta tattagtaaa aagtttttca ttttttatgg agtttaatag caaaaatttt
     9481 gcttgttttg taatacttga aaatcctgta tttttagaaa tttc
//
LOCUS       DAPIWU010000065         9382 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.065, whole genome shotgun sequence.
ACCESSION   DAPIWU010000065 DAPIWU010000000
VERSION     DAPIWU010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9382)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9382)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9382
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.065"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            176..1336
                     /gene="pglE"
                     /locus_tag="RJ285_001239"
     CDS             176..1336
                     /gene="pglE"
                     /locus_tag="RJ285_001239"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HDV7384008.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKNDVYEISKLILKSIKA"
     gene            1338..3110
                     /gene="pglF"
                     /locus_tag="RJ285_001240"
     CDS             1338..3110
                     /gene="pglF"
                     /locus_tag="RJ285_001240"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HDV7384009.1"
                     /translation="MIFYKSKRLAFFLISDIVLILLSVYLAFSLRFSGDIPSIFYYGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSKMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFVVEEKERIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            3110..4003
                     /locus_tag="RJ285_001241"
     CDS             3110..4003
                     /locus_tag="RJ285_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HDV7384010.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            4116..4508
                     /locus_tag="RJ285_001242"
     CDS             4116..4508
                     /locus_tag="RJ285_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HDV7384011.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            4531..5376
                     /locus_tag="RJ285_001243"
     CDS             4531..5376
                     /locus_tag="RJ285_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDV7384012.1"
                     /translation="MQKKYYELFFIVEEQYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            5380..7317
                     /gene="ftsH"
                     /locus_tag="RJ285_001244"
     CDS             5380..7317
                     /gene="ftsH"
                     /locus_tag="RJ285_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDV7384013.1"
                     /translation="MNNNTPNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NGLPTRLQELEEVKTEVKVEE"
     gene            7314..7931
                     /locus_tag="RJ285_001245"
     CDS             7314..7931
                     /locus_tag="RJ285_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDV7384014.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            7941..8669
                     /gene="pssA"
                     /locus_tag="RJ285_001246"
     CDS             7941..8669
                     /gene="pssA"
                     /locus_tag="RJ285_001246"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDV7384015.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKTRNQE"
     gene            complement(8660..>9382)
                     /locus_tag="RJ285_001247"
     CDS             complement(8660..>9382)
                     /locus_tag="RJ285_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HDV7384016.1"
                     /translation="QNFYEDFKSHKLIFNHEHQSIFKKNTSQQITLLHPTRIRRPKFL
                     NSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVADEEIKHFKLLNS
                     ALEELGYKYGDFPVHDNLESALEATKDSLSFRMGIVHRGLEAKGLDANPFVVQKLQSS
                     NHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNKYNFIELCKTFKQFSLAGKKLN
                     IQARIKAGFTQEECEVIEKFYS"
BASE COUNT         3204 a         1083 c         1810 g         3285 t
ORIGIN      
        1 tactccttaa atgctttgaa agtatttata aaaaagaaga cttagaaaag cttaaaaatt
       61 ggtatgaaaa caagctttga ctataaaaag aatttaaata tttgaatctt tgtaaatttt
      121 tttaggtaaa atagagtcaa tttataaaaa ttttgtttta cacaaaggat aaatcatgag
      181 attttttctt tctcctccgc atatgggtgg taatgaatta aaatacatag aagaagtttt
      241 caaaagcaat tatatagcac ctttgggtga atttgtaaat cgctttgaac aaagtgtcaa
      301 ggcttacagt aaaagtgaaa atgccttagc tttaaattca gccacagcgg ctttgcattt
      361 agctttaagg gtggcagggg taaaacaaga tgatattgtt ttggcttctt cttttacttt
      421 tatcgcttca gtagcaccta tttgttatct taaagcaaaa cctgtattta tagattgtga
      481 tgaaacttat aatatcgatg tagatttatt aaagcttgct attaaagaat gtgaaaaaaa
      541 accaaaagca ttgattttaa ctcatcttta tggcaatgcg gctaaaatgg atgaaattgt
      601 tgaaatttgc aaagaaaatg aaattgtttt aatcgaagat gctgctgaag ctttaggaag
      661 tttttataag aataaagctt taggaacttt tggagaattt ggagcttatt cttataatgg
      721 caataaaatt atcaccactt caggtggagg tatgcttata ggaaaaaata aagaaaagat
      781 tgaaaaagca agattttata gcactcaagc tagggaaaat tgtttgcatt atgaacattt
      841 agattatggt tataattacc gcttaagcaa tgttttagga gctattggcg tagcgcaaat
      901 ggaggtttta gaacaaagag tgcttaaaaa aagagaaatt tatgagtggt ataaagaatt
      961 tttaggagag tgttttagct ttttagatga attagaaaat tcaagaagca atcgctggtt
     1021 aagtacagct ttgattgatt ttgataaaaa tgaacttaat tcttgtcaaa aagatataaa
     1081 tatcagtcaa aaaaatatta ctttgcatcc aaaaatttca aaactcatag aagatttgaa
     1141 aaatgaacaa atagaaacaa gaccattatg gaaagctatg cacgctcaag aagtatttaa
     1201 aggagctaag gcttatctta atggcaatag tgagttattt ttccaaaaag gaatttgttt
     1261 gccaagtggt acggcgatga gtaaaaatga tgtttatgaa atttcaaaac tgatcttaaa
     1321 gagcataaag gcttaaaatg attttttata aaagcaaaag attagcattt tttttaattt
     1381 cagatattgt tttaatttta cttagcgttt atctggcttt ttctttgaga tttagtggag
     1441 atattccgag cattttttat tatggtatga tggtttctgc tattattttg cttgttttaa
     1501 aactttcatt tttatttgtt tttagaattt acaaagtagc ttggagattt ttttctctca
     1561 atgaagcaag aaaaattttt attgctttgc ttttagctga gttttgtttt tttcttattt
     1621 tttatttttt tagtgatttt tttaatcctt ttccaagaag tgctattgtg atagattttg
     1681 ttctttctta tatgtttata ggtactttaa gaattagcaa aagaatgctt gtggatttta
     1741 aaccttctaa aatgaaagaa gaagaaactc cttgtattgt agtaggggca acttctaagg
     1801 ctttgcattt gttaaaaggt gcaaaagaag gttctttagg gctttttcct gtgggtgtag
     1861 ttgatgcgag aaaagagctt atagggactt attgtgataa atttgttgta gaagaaaaag
     1921 aaagaataaa atcttatgta gaacaagggg taaaaactgc cattattgct ttaagacttg
     1981 aacaagaaga gcttaaaaaa ctttttgaag aacttgtagc ttatggtatt tgtgatgtaa
     2041 aaatattttc ttttacaaga aacgaagcaa gagatatcag tatagaagac ttgcttgcta
     2101 gaaaaccaaa agatttagat gatagtgctg tggcggcttt tttaaaagac aaggtagttt
     2161 tggtaagtgg agcaggtgga actataggca gtgaactttg taagcaatgt attaaatttg
     2221 gtgctaagca tcttattatg gttgatcata gtgagtataa tctttataag atcaatgatg
     2281 atttaaattt atataaagaa aaaattactc ctattttact gagtatttta gataagcaaa
     2341 gtttagatga ggtattaaaa acttataaac ctgagcttat tttacatgca gccgcttata
     2401 aacatgtgcc tctttgcgaa caaaatccac attcagcagt aatcaataat attttaggaa
     2461 ctaaaatttt atgcgacagt gctaaagaaa ataaagtagc taaatttgtg atgataagta
     2521 cagataaagc agtgcgacca acaaatatta tgggttgcac taaaagagtt tgtgagcttt
     2581 atactttaag tatgagtgat gaaaattttg aagttgcttg tgtgcgtttt ggtaatgttt
     2641 taggttctag tggtagtgtg ataccgaaat ttaaagcaca aattgccaat aatgagcctt
     2701 taactttgac gcaccctgat atagtgcgtt attttatgct tgtggctgag gcagtgcaac
     2761 ttgttttaca agctggagct atcgcaaaag ggggagaact ttttgttttg gatatgggta
     2821 agcctgtgaa aatcatagat ttagctaaaa aaatgctttt actttctaat cgcaatgatt
     2881 tagaaattaa aatcacaggc ttaagaaaag gtgagaagct ttatgaagag cttttgattg
     2941 atgaaaatga tgctaaaacg caatatgaga gtatttttgt agcaaagaat gagaaggttg
     3001 atcttgattg gcttaataaa gagatagaaa atttacaaat atgtgaagat atttcagagg
     3061 ctttattaaa gattgtacct gaatttaaac acaataaaga aggtgtataa tgtatataaa
     3121 agatatacaa agatttgaag ataatcgcta tcgtgctaga gcttatatga gttatatttt
     3181 aacaagaaat ctgcctaata aacttcctga tattcacctt gaaacgatta aaacagcttt
     3241 ggataaaata gctcatgaag ttgttgtttt tgatgctttg tatattttag atatttcagg
     3301 tatgcaaata gaaaatgcga tttccttaaa taaagctcat gaaatagggc agggtgagga
     3361 tagaagtact cgttcttatt tttatagagc tgtaaaatta agacgatgtg ttttgagcga
     3421 tccttatcct tcggttttaa ataatgagct ttgcgtgaca gcttctatgc caatttacga
     3481 tgataaaaat aacttgcttt ttgttgtttg tattgatatc aagcttgaag atattttaaa
     3541 gattattcaa gcaggaaaat ttgaatttgt ttttactcag tttagtcgtt tggtatattt
     3601 ttgcttcgca ctggttttat ttgtgattac ttgtttttta tttcaaaaag gtttttttag
     3661 tctttttgat aatcaagcta taggtataga acatatgttt gaaagtacca tcgctataac
     3721 tttggcttta gctatttttg atttggcaaa aactttgatc gaacaagaag tattaggaag
     3781 gacgaaaaaa gaagaaggtg gaattcaaaa aactatggtg agatttttgg gttctattat
     3841 cattgcttta gctatagaag ctttgatgtt ggtatttaaa cttgctattg gtgatctttc
     3901 tcagatgatt tatgcgattt atcttatcgg tggagtgagc ttgcttcttt taggtttaag
     3961 tgtatattta tttacggtta agtataaaaa taataatatt tgagtaaaaa tttaagtaaa
     4021 agatgatata atgctgtttt ttaaaatttt ttagcttgat taataaggct aaaaagggta
     4081 aaataaaact ataaaaactt tgaaaggacg aaattgtgaa attgttagtt gttgatgaca
     4141 gttctactat gagaaggatt attaaaaata ccctaacaag acttggacac gatgatgttt
     4201 tagaagctga gcatggcgtt gaagcttggg atttattaac taaaaatgaa gatgtaaaag
     4261 ttttaattac agattggaat atgccagaaa tgaatggctt ggagttggta aaaaaagtaa
     4321 gagcagagaa aaaatatgaa gatatgccta tcatcatggt tacaactgag ggcggaaaag
     4381 ctgaagtgat tactgcttta aaagctggcg taaataacta tattgtaaaa ccttttactc
     4441 cacaagtttt aaaggaaaaa cttgaagatg ttttaggaac aggaagtgga gaaggtgcag
     4501 ctgagtaaag gctgattttt aaaattctaa atgcaaaaaa aatattatga attgttcttt
     4561 atcgtagaag agcagtataa aaatttattt cttgattttg cttttgattt aggtatagaa
     4621 gccatagaag agaaagataa tggtgtttac attagatccc atgagagttt agaagagttt
     4681 tcatgggcac ttgaaatatt tgctcaaaaa cttacaacta ctttcaattt aaatcataaa
     4741 attatttcta atttaagtct tgtagagaaa gaaaacaagg actggataca agaatataaa
     4801 aaaggcataa aacctatctt agtggataat gtttacatcc atacaacttg gcaagaagaa
     4861 aagaagaatt gtataaatat aaagattaat ccagccttag cctttggctc aggacatcac
     4921 gaaagcacat attcttgtgt aaaattttta caaaaatttt ctaaaagtaa attaagagct
     4981 ttagatcttg gttgtggtag tggaattttg ggtattatta tggcaaagtt tggctgtaat
     5041 gttgaaattt gtgatactga tgagttggct attgatagtt ctttagaaaa tgcaagatta
     5101 aatggtgtcg attttcacaa ggcttggtgt ggatctatag ataaagcaaa tggtttatat
     5161 aatctaattg ttgcaaatat cattgcagat gtgattttaa ttttagaaaa agatattaaa
     5221 aaccatttag aagacaatgc tatacttatt ttgtcaggaa ttttagataa atattcaaca
     5281 agaattaaag aaaaatttca agatttggaa ctcattgatg aaatgcaaat caatgagtgg
     5341 tgtagttttg tatataaaaa taataaaaaa ggataagtaa tgaataataa taccccaaat
     5401 aataagggta atccgcaggg taataatttt tttaacaaaa atcccatttt tatttttgcg
     5461 atttttgcaa ttgtaatgat aattattttt aagggatttt ttgatggcaa tggttctttt
     5521 ggcggggcat tgaatggcaa tgaagtaaat aaaaatgtcc cttattctga gttaaaaaag
     5581 cttattgaaa gtggacaaat caatcaagtt agtataggac aaacaacaat caaagcgatt
     5641 tcaagctctc acaatactgt ttatacagca aaaaaagtta atgatcctga gcttgtgagt
     5701 ttactagata gtaaaaatat cgcttatggt gcgtattctg aaacaaattg gtttacggat
     5761 atactttttt catgggtttt gccagtattt attttctttg gtatttggat gtttttggca
     5821 agtcgtatgc aaaaaaatat gggaagttct atattgggta taggaagttc taagaagctt
     5881 gtaaattcag aaaaacctaa agtaaaattt agcgatgtag ctggtgttga agaagctaaa
     5941 gaagaagtaa aagaaattgt agatttttta aagtatcctg aaagatatat taaattggga
     6001 gctaaaattc caaaagggct tttacttgtt gggcctccag gtacaggaaa aactttgctt
     6061 gcaaaagcag ttgcaggtga agctgatgtg ccgtttttta gtgtttcagg ttcatctttt
     6121 atagaaatgt ttgtgggtgt aggtgcttct cgtgtgagag atttgtttga aaatgcaaaa
     6181 aaagaagctc ctgctattgt ttttatagat gaaatagatg ctattggtaa aagtcgtgca
     6241 gcaagtggca tgatgggtgg aaacgatgaa agagagcaaa ctttaaatca gcttttggct
     6301 gaaatggatg gctttgggac agaaagttcc ccagtcattg ttttagcagc aacaaatcgc
     6361 ccagaagttt tagatgcagc gcttttaaga ccaggaaggt ttgatagaca agttttagtt
     6421 gataaacctg attttaaagg taggtgtgat attttaaaag tacacatgaa agatgtcaaa
     6481 atatccccaa aagttaaagt agaagatata gcacgtttaa ccgcaggact tgcaggagct
     6541 gatcttgcaa atattattaa tgaagcagca cttttagcgg gtagggattc taaaaaatat
     6601 gtagaacaaa atgatttagt tgaagctgtt gaaagagcta tagcaggact tgagaagaaa
     6661 tcacgtcgta ttaatgaaaa agaaaagaaa attgttactt atcatgaatg tggtcatgcc
     6721 ttgattgctg aaactaccaa aggtgcaaag cgtgtaagta aagtttctgt gattccacgt
     6781 ggtcttgcgg ctttaggata cacattaaac acccctgaag aaaataaatt tttaatgcaa
     6841 aaacatgaac ttatcgctga agtagatgta cttttgggtg gtcgtgcggc tgaagaagta
     6901 tttataggtg aaatttcaac gggtgcaagt aatgatttag aaagagcaac cgatatcata
     6961 aaagctatga tttctatgta tggtatgagt gaaattgcag gacttatggt gcttgaaaaa
     7021 caaagaaata ctttcttaag tggtgggcaa actataaaag actattctga aaagatggca
     7081 gaatctttag atgattatgt aaagaaaacc ttagatgaac gctataaaga tgttaaagat
     7141 actttaaata cttataaggg agcgattgag actatggttg cagcccttta tgaagaagaa
     7201 actattgaag gtaataaagt gcgtgagatt attaaagagt ttgaggatca aaatggttta
     7261 ccaactcgtt tacaagaact cgaagaagtt aaaactgaag ttaaagtaga agaatgaaag
     7321 attttattgc aaaagatgga tatttaagtc ttattatttt aagcttaatt tttatttttg
     7381 tgtggatttt ttattctttt tccatcttgc tattagcatt aattgtaatt tgtatttttc
     7441 tttttagagc gcccaaaaga gaacttgttt gtagtgatga aaaagctatt tttgcaccta
     7501 tggatggtag ggttactaaa atagaaaata ttcatcataa agatttgggt gaatgtgttg
     7561 aaattactat taaaaatgct ctttatgatg ctgggaattt taatacacct tttgcaatgt
     7621 ctataataga tattcgttta cgacatgggc tttttttgtg cagtgaatta aaatctgcaa
     7681 aaatgatgaa tgaaagagct tttattttgg caaaagttaa agagaataaa acgatagcct
     7741 tgcgaatcta tgcaggttct tttgatagaa aattaaagct tgataatatt tctcatgatt
     7801 taaaagcagg agatagaatg ggttttttaa ttaatggctc tataagttta cttttaccaa
     7861 aagatactag aattcatata ggcttaaatg atgaaattaa agcaggttca ttgctaggct
     7921 attttgcgta aggaaaaata atgaataaca gaccgcaact aatttatatt ttacccaatc
     7981 tttttacagc tgcttcagct tttttagggg ttatttctat tatagcttca atacatggaa
     8041 attattatac agctttgatt tatattattt tatctttgat ttgcgatggg cttgatggcc
     8101 gtgttgcaag acttacaaat tctacttcaa aatttggagt agaatttgat tctttggctg
     8161 atctagtagc ttttggagtt gctccagcgg ttctttttta tatggcgata ggttatgatt
     8221 ttggaaaact tggatctttg attacagctt tttttgtggt ttttggagct attcgtttgg
     8281 cgagatttaa tgttaccaca ggcacttatg aaccctccgt ttttataggt cttcctatac
     8341 ctactgcagc agttgtgagt gctatatgga cttatgcatt tatcagttat gattttttaa
     8401 agccttatgg tgtagttttt ttggtgcttc aagcaatttt agggctttta atggtaagta
     8461 atatacgcta tcctagcttt aaaaagcttg attttaatcg ttctagtgtt ttaaaagttt
     8521 tgattatttt aattataata ttttcatttt tatatcttta ccctcttgaa agtttagtaa
     8581 ttttagcaag cttgtatgtg ctttatggaa ttattcgagt tttatatact attatcgttt
     8641 caaaatttaa gacaagaaat caagagtaaa atttttcaat gacttcgcat tcttcttgag
     8701 tgaagccagc tttgattctt gcttgaatgt taagtttttt tcctgcaaga gagaattgtt
     8761 taaatgtttt gcaaagctcg ataaaattat acttgttttg gtttgcaaat ttccaccaag
     8821 tatctccttt tttaacgtgt tttatttcat cattaagtat aatttcaaga tattccatta
     8881 aaagattttt aatggaatga ttggaacttt gaagtttttg aacaacaaag gggttggcat
     8941 caagcccttt agcttctaaa cctctatgaa ctattcccat tctaaagctt aaagagtctt
     9001 ttgtagcttc tagagcagat tctaaattat catgcactgg aaaatctcca tatttgtaac
     9061 caagttcttc aagtgctgaa tttaaaagtt tgaaatgttt aatttcctca tctgccacct
     9121 ccagccaatc gtaataaaat tgcaaaggta gatttttaaa gcgataactc gcatctaaag
     9181 ccaggttaat tgcattaaat tctatatgag cgactgaatg aattatttta gcaagcgcat
     9241 gagttgaatt gagaaattta ggccttctta tacgcgtagg atgaagcaag gtaatttgtt
     9301 gcgatgtatt ttttttgaaa atgctttgat gctcgtgatt aaaaatcaat ttgtggcttt
     9361 taaagtcttc ataaaaattt tg
//
LOCUS       DAPIWU010000066         8905 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.066, whole genome shotgun sequence.
ACCESSION   DAPIWU010000066 DAPIWU010000000
VERSION     DAPIWU010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8905
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.066"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(193..2064)
                     /gene="dnaK"
                     /locus_tag="RJ285_001248"
     CDS             complement(193..2064)
                     /gene="dnaK"
                     /locus_tag="RJ285_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDV7384017.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLASEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            complement(2086..2613)
                     /gene="grpE"
                     /locus_tag="RJ285_001249"
     CDS             complement(2086..2613)
                     /gene="grpE"
                     /locus_tag="RJ285_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDV7384018.1"
                     /translation="MSEQKQEIENENAQNSENLQDDLQDNEKNETNELQKELEELKDK
                     YMRANAEFENIKKRIEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKIK
                     EGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGYK
                     IADRVIRPTKVSVAK"
     gene            complement(2610..3404)
                     /locus_tag="RJ285_001250"
     CDS             complement(2610..3404)
                     /locus_tag="RJ285_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HDV7384019.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            complement(3705..5795)
                     /gene="cfrA"
                     /locus_tag="RJ285_001251"
     CDS             complement(3705..5795)
                     /gene="cfrA"
                     /locus_tag="RJ285_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HDV7384020.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSLLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRVSYLANNYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSAPGSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNDGREVVGQAT
                     QPFLGENRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQKYNKDNMIPGIGICGVDRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFLASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGAPTWVNTYNCI
                     EEGRRIYISINGSF"
     gene            6120..6812
                     /locus_tag="RJ285_001252"
     CDS             6120..6812
                     /locus_tag="RJ285_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7384021.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKP
                     KKIIPPANAKAISQPKKDTNMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIYPR
                     QARKMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYEKT
                     FHIKIPLVYKLS"
     gene            complement(6904..7341)
                     /locus_tag="RJ285_001253"
     CDS             complement(6904..7341)
                     /locus_tag="RJ285_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDV7384022.1"
                     /translation="MKKDSYHKITSKLIQEFDLLAVEDLQIKNMCKRAKLKNIKAKSG
                     LNKSILNTSFYQFSQYLEYKAKHNGKFFIKVNPQYTSKTCSVCGNIKKNLMFKDRVYL
                     CEKCGNTLHRDINAANNILKRGLKSFGLGISLEDYKLKAFRIS"
     gene            complement(7461..7724)
                     /locus_tag="RJ285_001254"
     CDS             complement(7461..7724)
                     /locus_tag="RJ285_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDV7384023.1"
                     /translation="MNTFFKMRYHRDLPNTYKFNQITIIKNHNKYYLAFSIIYDESNV
                     SLISSKDFDIKKAVDIDLNINEITLSSGELIATNSKLLSRAEY"
     gene            complement(8154..8248)
                     /locus_tag="RJ285_001255"
                     /pseudo
     CDS             complement(8154..8248)
                     /locus_tag="RJ285_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2919 a         1602 c         1103 g         3281 t
ORIGIN      
        1 attttttagt ttgcttacac taaaatgaat tgtctaattt aaattagaac ttcaaaaaga
       61 attggttaaa aaatcaatga aaaattaggt agcaagctaa taaaaaaatt atattttaca
      121 gattttgtca tttttttaaa attttaaaaa attttcaagc cttttaaaaa ggcttgaata
      181 gagattttaa gattactcaa cttcagcgtc gattacatcg tcatcttttt tctttttatc
      241 atttgctgtg tttggctcat cttttttata catattttca gctagtttgt gagaaacttc
      301 acttaaagct ttcattttgc tttcaatctc ttctttgctt gcattttgat ttttcaaagt
      361 ctcacgcaaa tcatcaagag ctttttgaat attttcttta tcagcagcgg caactttttc
      421 acccaactca cttaaagatt tttctacttg atgcgccaag ctatcagctg catttctagc
      481 atctacagct tctttgcgtt ttttgtcttc ttctttgtga agttcagcat cttttaccat
      541 gttattaatc tcttcctcgc taagtccgct tgaacctgtg attttgatct cttgagcctt
      601 acctgttgct ttatcttttg cactaacagt taaaatacca tttgcatcga tatcaaaagt
      661 aacttcgatt tgtggcatac cgcgtggtgc tggtggaatt ccttcaagat taaaatttcc
      721 taaagattta ttatcacgac taaattctct ttccccttgt aaaacattga tagttacagc
      781 actttgatta tcttcagcgg ttgagaaaac ttgctctttt ttagttggaa tagttgtacc
      841 tttttcgata atcttagtca ttaccccgcc tagagtttct atacccaaag agagcggtgt
      901 aacatcaagt aaaagcacat cttttacatc accttttata accgcacctt gaatcgccgc
      961 accgatagcc acaacttcat caggatttac agacttatta agatctttat taaaggcttt
     1021 tttcacttct tcttgcacta aaggaacacg agtagagccc cctaccataa cgatttcttt
     1081 gatctcatct tttttaagcc ctgcatcgct tactacttca ttgattttag tgatggtttc
     1141 agccactaaa gaatcaatca taccttcaaa tttagctcta gtaagttttt taaccaagtg
     1201 ttttgggcca ctcgcatcag ctgtgataaa tggtaaatta atttcagttt cattagctga
     1261 gcttaattct tttttagcat tttctgctgc ttctttcaag cgttgcaaag ccataacatc
     1321 atttttaaga tctatgcctg tttcatcttt aaattcactt gctagaaaat cgataagttt
     1381 attatcaaaa tcatcaccac ctaagaaagc gttaccacct gttgctaaaa cttctactac
     1441 attatcgcca gtttcaagca cagtaacgtc aaaagttccc ccacctagat cataaaccac
     1501 aattttttca ctatcttttt tatcaagtcc gtaagctaga gctgctgaag taggctcatt
     1561 gataattctt aatacattaa gtcctgcgat agttcctgct tcttttgttg cttttctttg
     1621 tgcatcgtta aaatacgcag gcacagtaat aaccgcatct acaacactct cgcccaaaaa
     1681 agcttcagca tcttctttta gtttcattaa aactttcgct gaaatttctt gcggagtata
     1741 aattttacct gcgatttcta ttgcgcacgc accatttctt tcggtgatgt ggtaaggaag
     1801 tctattttta gcttctttag ccgcatcttc attgatcatt aaacccataa ttcttttgat
     1861 agaataaatg gttttttcag ggttggttac cgcttggcgt tttgcactat cgcctactaa
     1921 aacttcgcct ttatctgtaa aagctaccac tgaaggagtt gtgttttttc cttctttgtt
     1981 tgggattact ttgctctcgc cgcgttcata cacagcaaca caagaattgg ttgttcctaa
     2041 atctatacct ataactttac tcatttttta tccttttatt aaaatttatt ttgctacact
     2101 aactttggtt gggcggatca cgcgatcggc tattttataa cctttttgaa gcacttgaac
     2161 cacttcacca ctttgatggt tttcactatc tacatgaaac attgcttcgt gtaaattagg
     2221 atcaaactct ttttcatctt tgataagagc caccccatgt ttttcaagtt tcttaagaaa
     2281 taaatctaaa gtattttgca ctccttcttt gatttttaag ctaatttcat cttggcattc
     2341 gacattaaca gctgcttcta aagcatctaa aacatcaagc aaatcctttg caaagctttc
     2401 atttgcataa gccatagcac ttagcttttc tttttctatt ctttttttaa tattttcaaa
     2461 ttcagcgttt gcacgcatat atttatcttt taattcctct aattcttttt gtaattcatt
     2521 tgtttcgttt ttttcattat cttgcaaatc atcctgcaaa ttttcagaat tttgtgcatt
     2581 ttcattttca atttcttgct tttgttcgct catgccgcct cctttatgta ttgtaatatc
     2641 tttttataat ccgtataaac actacctgct aagataatat ttacatcttc gcccaaaaac
     2701 tgcgcatcta ccttaagccc cataaaacct tctttaaata aaggttcaaa ttcaagactt
     2761 tctttaaaat gacggtgaat ttgacaatct aagagcttaa caaattcatc attttgataa
     2821 atttgataag ctctttcttc attacttcta tagcaaatca aattttgtct taagctagct
     2881 attttttcta caagatctat aaaatgaact ctcaaagcta ttttttctat actagaaaga
     2941 tcaagcccta taagactttg taaaaaattc cacgcttctt tttcgtattt taaaaccagc
     3001 tcttcatctt caaaatcaag cactataaat ttagtattaa gatctagtac ttctttaagt
     3061 actaaacttc tacctccata aacaagacaa taaatttcaa attctttact taactctttc
     3121 aaaaagcttt cgtttttgat atggatattt ttatcttgtt ctttttccca aaaactttgc
     3181 caataatttt gcatcgttaa aatagtagga attctaccac tacttatatg aagctgagtg
     3241 atcaaaccct catcgctaag tcttttaaga taaacgcgta tagtcgaagc aggtatacaa
     3301 aggtttgaat ttaattcatt agaaccaata ggtgcattat ccaaaagata agtttggata
     3361 atagactcta aaatcaaatc ctttttatct cgacttttca tcatgttttc ctttaaagct
     3421 agcactctat tttttgattg ctagatatat tatacaacat tgagtgttat tttgtcaagt
     3481 ataaatataa aaaaatatac ttaattttat ttagtctata taactaaagt tttattagtt
     3541 acttttttat aaggatagga tatatttcaa gattggtaaa cagggtgata attagataag
     3601 aaattttaaa tagattcgat aatttaactt ttttaaaagc acaagatgct ataaacaaaa
     3661 aaccaaagaa gcctttataa gctctttggc ttttctatca aagcttaaaa actaccatta
     3721 atggaaatat atattcttct tccttcttct atacaattgt aagtattgac ccaagtagga
     3781 gcaccgctat tttgataaga ttcccaacca tctgtaaaac ttttgttaaa aagattataa
     3841 atagctgcat tgatactcca ttgcttattg atatcataac gcacacccat agaagctaaa
     3901 aagatatcct tataatattc cctatttata ttagtatcac ccatatagcg atctatttgc
     3961 cattcgcctt ttatccaagg ggtaatttta ttatagaagc tgtattcagt ttttaacatg
     4021 atattgtgtt ttaaactatc ctgttcaggt ttacctatca cacttttatc ttgtgcttct
     4081 ttaacctcac tatcaagata agtataagca aaatttacat ttaaattatc aagagggctt
     4141 atccctgctc caagctctat gcctttatat tcgaccttgc catggttgat tgccttaaaa
     4201 catctatcaa caccacaaat accaattcct ggaatcatat tgtctttatt atatttttgg
     4261 gttgaaattt tatctttaaa atttgttaaa aaacctgtcg cagaaacata aaacaaatca
     4321 ttattgtaaa tagctgctat ttcataattt aaagatgtct cttcttttaa atcaggattt
     4381 ccatatatag gaaatctacc ttgaccacta taattataag ctccatttat caaacgattt
     4441 gcataaggag tcctaaaacc cgtagataca ccgcctttta aagtaagttc atcagtagga
     4501 ttataaacta gataagctct tggcgaaata ttatttccaa aaatttcatg atgattgtat
     4561 cttgctccaa aagtcaatct taagttatct tttatgctgt actcatcctc tgcaaatatt
     4621 gccaataaat actgatcaaa attggtcgga ttagctattt tatcttgcat tttttcaagc
     4681 ctatattcac cacctgcgct taaaatatga ctttgtccca aaggaatgac agacttagta
     4741 tctaagataa tatcttctgc gactatatct ctattttctc ccaaaaacgg ctgtgtagct
     4801 tgccctacga cttcacggcc atcattgctt accctattgt attgcaaacc agaagtgata
     4861 gaaaagtttt cataaacacc ctcatggctt aaataagtca caaatttatc aacttccata
     4921 atatctgcat aaccacccgt taagctacct ggcgcactac ctgggcttgt gatggttcct
     4981 aattgaccct gtttgttatc gtaatgattt cttgaaaaat ctatatcaaa tataaaggta
     5041 ttataattat tagccaaata actgactctt gttcctatat taaaattatt tgcttttgtg
     5101 ggactttgag cttgatctcc ttgaactctt tgtccacttc catttgtaaa ttcaacatta
     5161 gattgctgtc tgtaaaattc tctaaatcga agtgttagac ccaatttgtc attcatcaaa
     5221 ggaccactag aataaatact tgttccataa gtattgcccc aatctttatt ttcatttaaa
     5281 agagcgtcca agcttacaga agtttcccat ttatcactta cttttttggt aatgatattt
     5341 accaccccgc ctaaagcttc ggagccatat aaagtactca taggaccttt tataacttct
     5401 attctttcta tgctagaaat tggaggcaat aaagaatttg aaatttcatt aaagccatta
     5461 ggaccaactt ccccaccaat accctgacgg cgtccatcaa tcaaaaccaa agtatatccc
     5521 gtaatacctc tcatagtaat attataagaa cctgtttttc ccttgctagc atataaatca
     5581 acgcctggga tatctgcgat agcctctgca acatctctat aaggcttact ttgtaattct
     5641 tttttactga taacattgat agtagcagga gcttctttaa tatcttgagt aaagccagaa
     5701 gcactaacga ttgagctatc tagttctaca ttttgcgata tggcattgga gcttaagaga
     5761 ccaatggcgc aaactgatag acatattttt ttcatttttc tccttttgtt aaatattgat
     5821 ttagaaatca aaatattatg ataataatta ttaatttaag ataaattttg tatcaattgt
     5881 gataattagt attaattaaa aatttatttt ttcttgctat aattcttaaa aatataagtt
     5941 tttttagaga agtaaatagc aaaaattaaa tatcttttag atacaagctt gattatttga
     6001 ttgttatttt tctctgtgaa atttgtttca aaatttatct ttttaaacaa tttatcatag
     6061 aatgtgttta agaaataaag atatttaaat caaaaaataa aatcataacg gagtaaaaga
     6121 tgaaaacatt tataagcaat cataaaaacc aatcttcttt tatcacttta tttgttttta
     6181 cacctttatt ttttgttttt ctttattcta aagatttttt acacatacaa cccaatgaaa
     6241 ctattaaaga aaataaattt aatatggcaa tcaaacattt tgtacaaaat tcctccgata
     6301 tgaaacctac acaacctaca caacctacac aaactataca agagccttcg aatgtgcaac
     6361 ccaaagaacc tgtgcaagaa ataaaaaaaa taaaaccgag aaaagaaaaa cctatcgcta
     6421 aacctaaaaa aataatccct ccagcaaatg caaaggcaat aagtcaaccc aaaaaagata
     6481 caaacatgca gcaacaaact ccacaagcca gctcttacca aagcgtatct ttaactagta
     6541 atagtgagct tttaaaagaa ataaaatcag caatcgatga agccctaatc taccctagac
     6601 aagctagaaa aatgcgtatg agtggggagg ttcttgtaga atttacctgg acaaaagaaa
     6661 agaaattaga aaatttaaaa atacttaagc cttcaaaata tgattttcta aataaaagtg
     6721 ctttagaaac tatacgcata gcttctaaaa aatttccaca atatgaaaaa acttttcata
     6781 taaaaatacc attggtatat aaattaagct aaatctttca caatatactc tatttttaat
     6841 acaaatcact ccagctttgc taacgcttag aagtagaagc ttcctagcta aagctaacta
     6901 gtattagcta attcgaaagg ctttgagttt atagtcctca aggctaattc ctaacccaaa
     6961 cgactttaat ccacgcttta agatattatt tgcagcatta atatctctat gtaaagtatt
     7021 gccacatttt tcacaaagat acactctatc tttaaacata agattttttt tgatatttcc
     7081 acatacacta caagttttgc ttgtatattg tggattgact tttataaaga atttgccatt
     7141 atgctttgct ttatactcta gatattgaga gaattgatag aatgaagtat taagaataga
     7201 tttatttaaa ccacttttag cttttatatt ctttaattta gctcttttac acatattctt
     7261 aatttgcaaa tcttcaactg ctagcaagtc aaattcttgt atgagttttg aagttatctt
     7321 gtgataacta tcctttttga tatttgaact tttttcatag attttattta attttaattg
     7381 tgttttttga aattatggct taactttgtt ttctcttttt tgtttttaat attctcctgc
     7441 tttgttttct ttgcaatctt ttaatattca gctctactaa gtagctttga gttagtagct
     7501 attaactctc cactgcttaa ggtaatctca ttgatattta aatcaatgtc aactgctttt
     7561 ttaatatcaa aatctttgct agatattaaa gaaacatttg attcatcata aatgatacta
     7621 aaagctaaat agtatttatt gtgatttttg ataatagtga tttgattaaa cttataagta
     7681 tttggtaaat ctctgtgata acgcatttta aaaaatgtat tcataagtct aaatatctta
     7741 aacttagtag tatcactatc tttgattttg taggcttgat tattccaatt aaagctttgc
     7801 tttgcaaatt tagagttttt aaatttggga aagcctttgt ttttatctct aattgcttgc
     7861 tctaaggcac gagaagatta atccttgctt gttgggttac aacactttta tagcttaatt
     7921 ctcttgcttt tataaggcta gttttattga ttatctatct tacttgcctt taaataactc
     7981 ctatcttttt tatctaaatt cttattttta tcccactgct cttgctgtaa atttaaacaa
     8041 atattatagg cttgatatag atgaaacatt gatgattaat aagcttttgt tgttctttgt
     8101 ttaggtagaa ttctatattt aaaacctttg gttatttgca ttgctttgtt ccattagggc
     8161 tttttttctt tttggttata tattttttct tagggtaatt atcttctatg ccttgatttt
     8221 ctgcatattt tttaagagtt tctagcatta ttccgcatag gtattctata aaaatactga
     8281 ttatgtcaaa tacctaacta gagccgtaca actaacactg taagcaattc atctcccact
     8341 taagaagtga gagttttatt gaataaaaaa agataaattt aaagcaagta atcttttttt
     8401 agacaacact aaacccttgc atgtatttac agtaatattt atttcatcat aaacaacccc
     8461 caacccataa acctcaataa acactataaa ataaacttga gtgattaaaa atccaaccca
     8521 attattgaac aaacccaacc tacataataa aatataaact agacatataa agaacaattg
     8581 acacataaaa atagattgaa taaataaacc tatacaagta aacataaaga ttaattattg
     8641 atacaaaaga ttcaataaat aaaaagaata attgagatat aaaaacatat aaactaaaca
     8701 actcaaacaa ccattaaatt aacccaagcc aatcaacaac catagctaag ctgacaacac
     8761 aacaaatcaa tttaaatata aaactacaaa ttaaatcaac ccaagctaat taaacctata
     8821 aacataaaaa aataattaaa tataaaaaca acgattgaca tataaaaact aagattttaa
     8881 atctataaga ataagataaa gtaga
//
LOCUS       DAPIWU010000067         8525 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.067, whole genome shotgun sequence.
ACCESSION   DAPIWU010000067 DAPIWU010000000
VERSION     DAPIWU010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8525
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.067"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            11..436
                     /gene="exbB"
                     /locus_tag="RJ285_001256"
     CDS             11..436
                     /gene="exbB"
                     /locus_tag="RJ285_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDV7384024.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            429..818
                     /gene="exbD"
                     /locus_tag="RJ285_001257"
     CDS             429..818
                     /gene="exbD"
                     /locus_tag="RJ285_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDV7384025.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            815..1499
                     /locus_tag="RJ285_001258"
                     /pseudo
     CDS             815..1499
                     /locus_tag="RJ285_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
     gene            complement(1512..2381)
                     /locus_tag="RJ285_001259"
     CDS             complement(1512..2381)
                     /locus_tag="RJ285_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384026.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYMNYVARNDGSIRLNGEANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIREASGGGANAMKTIDPQKINKKDDKENNI
                     KEKGDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2385..2546)
                     /locus_tag="RJ285_001260"
     CDS             complement(2385..2546)
                     /locus_tag="RJ285_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384027.1"
                     /translation="MLKIILILSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2641..3624
                     /locus_tag="RJ285_001261"
     CDS             2641..3624
                     /locus_tag="RJ285_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HDV7384028.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3710..4798)
                     /gene="aroC"
                     /locus_tag="RJ285_001262"
     CDS             complement(3710..4798)
                     /gene="aroC"
                     /locus_tag="RJ285_001262"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDV7384029.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLCEFGICVQSGVFGIGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLVGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSYNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4798..5472)
                     /locus_tag="RJ285_001263"
     CDS             complement(4798..5472)
                     /locus_tag="RJ285_001263"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDV7384030.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5459..5899)
                     /gene="rnhA"
                     /locus_tag="RJ285_001264"
     CDS             complement(5459..5899)
                     /gene="rnhA"
                     /locus_tag="RJ285_001264"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDV7384031.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5886..6872)
                     /locus_tag="RJ285_001265"
     CDS             complement(5886..6872)
                     /locus_tag="RJ285_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384032.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFASKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKESDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6942..>8525
                     /locus_tag="RJ285_001266"
     CDS             6942..>8525
                     /locus_tag="RJ285_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDV7384033.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALEAIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNSTLA"
BASE COUNT         3078 a         1457 c         1096 g         2894 t
ORIGIN      
        1 ggagaaaaat atggaatttt taaaagatta catcgattta attatctttt taattctagg
       61 aattatggca tttatagctt tttggtgtgt tgtagaaaga atgctatttt ttagaaaaat
      121 taactttaaa aattatgaga atcaagagca atttgatgat gcgattagtg aaaatttaac
      181 caccatatat atcatctatt ccaatgcccc ttatatagga cttttaggca ctgtaatagg
      241 catcatggtt acattttacg aaatgggctt ggcgggcaat atagatgtca aatctatagt
      301 cgtgggactt tctttagctc ttaaagctac agccttagga cttttggttg ctattcctgc
      361 tttaatggct tataatgcct tacttagaaa agtttctctc ttaagcaatg cttataaggc
      421 aaataaaaat gcttaaacta ccaaaaaatg aaggtttaaa tatagtccca tttatagaca
      481 ttatgcttgt tttgcttgct atagtgctta gtatttcaac ctttattgcg catggaaaaa
      541 ttcaaatctc acttccttca agtgaaaatg ctaccaatat aagcaataat gaaaaaaaac
      601 ttcttataac catagacgaa aaaaatactt tttatttaaa tgataaatta gctgatttaa
      661 atgaagttca aaatgctatt ttttcacttg ataaaaaaac catagtagaa ctaaaaagcg
      721 ataaaaatgc taaatttgaa agctttgtaa aaattataga ttttttaaaa gccaaagaac
      781 atgaaaattt tcagattctt actgagaaaa acaaatgaaa actttatttt taaatcataa
      841 ataccaagct tcttatataa cttttatagt ctttatacct ttactttttg tcatttttca
      901 ctcaaatgac ttttttaaaa tggaaattaa aaatgaagat tctttttctt tagcaataaa
      961 acaatttacc caaactaatc caacaaatga gactaaacca acagaatcca ttatagaacc
     1021 tatcaaacca aaacctcagc caaaagttat taaaaaaaac tcctgaaaaa attcaaaaaa
     1081 aggtaaaaaa aatacctcca cgcccaatac caaataaaac cccaataaca ccaactcaag
     1141 aagttaaaac ttttacaaaa acaactgata caaatgtcaa acctaaaatc acccaattaa
     1201 cacaaggaaa agataatcac cctgtattaa aagaaattca aaaagctata caacaagcac
     1261 aattttatcc aaggcaagca aaaaaaatgc gtatgcaagg aactgtaaaa gtagaatttt
     1321 tatggaaaga aaacaaaact ttagcagatt taaaaatcat agaaagctca ggatatgatt
     1381 tattagataa aagtgcttta gaaagcataa gaaaagcttc tttaaatttt ccacactata
     1441 acggagattt aagaattaca ctacctatta tatatgattt taaaacccta agaggataaa
     1501 attataattt gctacactct cttatctaca atttgtgctt cttgattttc aattttattt
     1561 tgaaaatctt tacttaaatt ctgacttaat tcttgcaaag atttttgctt cagtttttca
     1621 aattcttcag gattgctagc ctcaagcttt gcctgctcat cagcacttaa agcacttaaa
     1681 cctttttctt gagctttttg aagcaaatct tcgtctcctt tttctttgat attattttcc
     1741 ttatcatctt ttttattgat tttttgcgga tctatggttt tcatagcatt agctccacca
     1801 cctgatgctt ctctaatgtc gcttaaaatt tctctcatgc taggttcttt aacatcacta
     1861 tcatcaactt taccatcttt atttacatct ttatcaataa aaaaatttaa tttttcttct
     1921 atatttgcat catcagatat tttttcatcg cttgttttaa agcctaaatt ttgcatactt
     1981 tgttgaaggg tacttgtatt aaaatttaat tttacacttt gttgtttatt atttaaattt
     2041 gaatttaaag aaccaaaatt atcttttaca ctttcaaacc aatttgaaac aaattgattt
     2101 gcttcgccat taagccttat actaccatca tttctagcaa cataattcat ataagaaccg
     2161 aaattttttt gtaaactact ataattttca tcgcttaaat ttaaagctat aagttcacct
     2221 tgcttatttt caaaaacaac cttaacacca tcgctattta aactcgaaag atcttgcacg
     2281 ggaattttat cttgatcttc tttttttaat acgctaagct cttttttatc aacattatta
     2341 gttaaagaat gggttaaact agcagaagta tcgattttca ttatttatcc ttttttacat
     2401 tttgcaaata aacctaaacg acacattttt ctctcatgtg aattttttaa agaattacac
     2461 tttttaagtt cttgctcgta gttagcacaa gaatttgcaa aagcaaaaga actcaaaatg
     2521 cttaaaatca aaattatttt taacactttc caatccttat tttaaagatt ttttagttaa
     2581 aattatacct tttataatcg acaaaatctt aaaaaacttt ataatctcag aaaggaatca
     2641 atgaaagcat tagctctttt tagcggtggg cttgatagta tgcttgcaat gaaactcatc
     2701 actgcacaag gcatagaagt taaagctcta aatatcaaca taggttttgg aagcacaagt
     2761 gataaaagcg aaatcatgaa aaagcgtgca gcgatggtag gtgcggattt tgaaatgata
     2821 gatgtaagaa attcctatct tcaagaagtg ctttttaatc cacaatatgg ctatggcaaa
     2881 cattttaatc cttgtataga ttgtcatgct tttatgttta aaactgctct tgctatgtta
     2941 aaagaagaaa atgcaagttt tatcatcaca ggagaagttt taggacaacg ccctatgagt
     3001 caaagaagtg atgcaatggc aaaggttaaa aaacttgctc ttgatgaaga agatttaatc
     3061 ttgcgtccta tgtgtgcaaa aaacctacct ctaaccaaac ctgaaagaga aggttgggta
     3121 gatagagaaa aactcgaagg tattagcgga agaagtcgta aaagacaact tgaacttgca
     3181 gctaaatttg gattagaaga ctttgaaagc ccaggtggag gttgtttgct aactcttgat
     3241 agttttgcta aaaaaattcg agatttcata gaatttgaca aagatatgca ggttaatgac
     3301 gcacaacttt taaaatatgg tcgtcattta agattaccca atggagctaa aatgatcata
     3361 ggtagaaatg aacttgaaaa tactctttta aaaggtttaa aaactcctaa atatgaagta
     3421 atagaacttg gagatttaat cggagcttac tctttggtag atgaaaaaat ttcagaaaaa
     3481 gacttagaac ttgccttaaa aatagccctt acctatacta aacacgaagt aggaaaaagc
     3541 tatgaactta aatttaaaaa tcaagcttat acaagtatag cttttgaaaa taaggctgat
     3601 attaatcaat tttttattag ttaaagtata aagtatttag caaaacaagc gatatagtat
     3661 ttgaatcttt tcaaaatatt gcaatcaagc ccatgaaaat gggctttttt tattttaatc
     3721 cataagcatt ttttaaattg tttaaattcg cactcgcatt caaaagcaaa caatcagcca
     3781 aaactaaacg caccatagca ctagctacaa cacttcctct aacacctaca caaggatcat
     3841 gcctaccttt gagttcaaat tccaaattat tgccaaattt atctatactt tcttgcttgg
     3901 caaaaataga aggagtaggt ttaaaataag tttttaaaat aagattttct ccatttgaaa
     3961 ttcctcctaa aattcctcca ctatgattgc ttaaaaactt gccatctttt aaagcatcat
     4021 tattatacga tccgcgcatt ttacttgcat taataccttc gcctatttca actgctttaa
     4081 cagcattaat tcccattaaa gcatgagcta atttagagtc taacttatca taaagaactt
     4141 ctccaagtcc cacaagcata ccactaactt ttgtaaaaac agcagcgcct acactatctt
     4201 ttgaatttct agcatttaaa atttcatttt taaagtcact ttctagtttt ggatcaaggc
     4261 aaaaaatttc acttttctta gcaaattcaa aatcaaattc ttcttctttc aaatttgata
     4321 caaaagttcc tattccaaaa acaccacttt gaacacaaat gccaaattca cacaaaagca
     4381 tcgctgcaac tgcaccacca gccactctag caacactttc cctagcgctt gatctacccc
     4441 cacccctatg atctcttatg ccatatttat aaaaataagt aaaatccgca tgagcaggac
     4501 gaaatagatc ttttaaatta tcataatctt tagaatgagc attttcatta aaaactacta
     4561 tagctatggg atgacccgtt gtatatcctt caaaaacccc gcttaaaacc tgagctttat
     4621 cgctttcttt tcttggtgtt gcaaatttac ttccgccttt gcgtttatca agctcatttt
     4681 gcaaaaattc ttcatcaaat ttaaccccag caggcattcc atcaataata catccaacag
     4741 ccacaccatg agactcacca aaacttgtaa atttcaatct cgtaccaaag gtattcacta
     4801 taaagctcct aatttctcaa gtgcaatttt tgctgccatt tgctgtgctt cttttttgct
     4861 tcccgcaata gctcttgcaa gttctttacc atcaagcatt aaagcgattt caaattgctt
     4921 taaatgatca ggaccaaaag cacgcactgt ttcatactgc ggagtttgtc cgatttttcc
     4981 ctgtgtaatc tcttgtaatt ttgttttata atcttttata agaatttttg catcaatttg
     5041 agggaaattt ttttctataa gtcttaaagc aatagttttt gcaaactcaa acccagcttc
     5101 taaatgtata gcacctataa tggcttctaa cgcatctgaa agtatagaag gcttttcttt
     5161 tcctccattg ttttcctcag caacactcat aaaaataaaa tcacccaaat ttaaactatt
     5221 tgcaattttt gcaaaagact tttcattcac taaagccgct ctaagcttag ataaatctcc
     5281 ttcggcatct ttggcgaatt tatgaaaaag gtattcacct acaactaaat caagcacggc
     5341 atcacctaaa aattccaagc gttcgttgtt gtaagatttt ttaaaacttt tatgggttaa
     5401 agcatgtata agaagatttt tatctttaaa ttcataagtt aaactctgct ctagcttttc
     5461 aatgtttttc atcattttcc cttgcaattt tcaaagcagc ttcacgcgcc aatgtatcac
     5521 acctttcatt ttccaaatgt ccattatgtg cttttaccca aaaagcctta atcttatgag
     5581 attttgccac tttaatatat tccttccata aatctatatt ttttttacct ttaaaatcct
     5641 tttttatcca tccttctagc cattcattaa tactttgaac cattaggtta gaatctgtaa
     5701 aaagcgaaat ttcacaaggc tcttttaaag ccttcaaaga ttcaataatt gccattagct
     5761 ccattctatt gttagtggta ttagcctcag ctccaaaacc ttccttttga tactccttat
     5821 aacgcaaaat ataagcccat ccgccaaaac ctggattatt aagacatgag ccatctgtat
     5881 aaatttcaat gtgtttcatt gtttttcact tcataaataa ttttacaagt attaaactca
     5941 taacaaacag gacagtgata aaaaaacaaa ggcattacat ttttacactc agaacaacga
     6001 tatgaaaatt ctaaccccgc attaaaagaa ttatctttta aaatttttaa cattttaaag
     6061 ttagaatttt taaaaacaaa ctggtgcgta tcatcatgct ttgaaatttt acccaaagca
     6121 taaaagaatt ctaaaaaatc ttgattttct aaattaaacg cttcattttc tctataaagc
     6181 aaatcacaaa tatcaaaaaa attttgccct aaaaacatat gatatttttc aaaaactaaa
     6241 cgccccaaca taggattatc ttctatttta aattctaaaa gttttttctt tttttcttca
     6301 tcagtaatat taaaagtaca aagttctaaa gctttgataa aatcactctc tttttgtaca
     6361 tcttcattaa gctcaaaaag acattctaaa agttctaaat tttctttata agaacgaagt
     6421 tttaaataaa caatttttaa aagttttaag gcttgtatat ttcttggacg cagttttaaa
     6481 gcttgtaata aaacttcttt tgcacgctct aaaaatcctg ctttaaaata aacttttgct
     6541 aaagaaagga aaataaattc tctttcttgt ttatctttac atttttcaag agcaatcaaa
     6601 taaatttgag ttgctttttc aaattccccg cttttagtaa aaatttcagc caaaaaactt
     6661 aaatttccaa aactcaagct actatttctt aataactctt tatgagcgtt atccatttca
     6721 aattttttta taaatttttc aagcttttgt tcttcatctt tgctagcaaa tattttccaa
     6781 atataatttg caacagctac aacaaatact aaaatggtta aaattataag ccctactaaa
     6841 gggtctctgt attctacaaa gaaaaaatcc atagtctcgc tctaaaaatt ttatgccaaa
     6901 ttatagccaa atctttgtat aattttaaca aggtttgtaa aatgataact aaagaaagta
     6961 tagaaaattt atcccaaaga cttaatattg ttgatattat agaaaattat attgaagtaa
     7021 aaaaacaagg ctctagtttt gtgtgtatct gtcctttcca tgcagataaa aacccgtcta
     7081 tgcatatcaa tcctaccaaa ggtttttatc attgttttgc ttgcaaagct ggtggagatg
     7141 cttttaaatt tgtaatggat tatgaaaaat taagttttgc cgatgcagtt gaaaaagttg
     7201 caagccttag taattttact ttgagttata caaaagaaaa acaagaaaat aaaaaagagc
     7261 taaagtctat actaccaagc ttaaatgcgt attttaaaga taatctcaaa caccacaaag
     7321 aagttttaac ctatctttac cagagagctt taaatgacaa agatatagcc aaattcgaat
     7381 taggttttgc aggagcaagt gaagatagta taagattatt gcaaaatcaa aaaattcctt
     7441 tagaagatgc tatgagtgtt ggagctttaa aaaaagatga aaataatgaa ttttacgcaa
     7501 gttttatatg gcgtatcacc tttccaatct acgatcataa agacttattg gtagggtttg
     7561 gaggacgcac tttaaatccc aatgtaccgg caaagtatgt aaattcaccc caaaatatac
     7621 tttttgataa aagtagaatt ttttatgctt ttaacatcgc taaagaaaat atagccaaaa
     7681 aaaaagaaat aatagtatgt gaaggctaca tggatgcaat agcttttcac aaagcagggt
     7741 ttaacaatgc tgtagcagtt cttggaacag cattaaccga acatcatcta cccttaatcc
     7801 gccgttatga tgcaaaagtg attttatgtt ttgacaatga tgaagcagga ttaaaagctg
     7861 cgacacgatc tgcattttta ttaagcacaa acaaaataga cggtaaagtg gcaattttgc
     7921 aaggcggaaa agatcctgct gagctcgtag caaaaaatga aagcacaaaa ctccataata
     7981 tactcgatga aggaatagag cttggtgaat tttatatcag acgcttaata tccactcatt
     8041 ccataatttc tgctcttgat aaacaaaaag ctttagaagc tatacaaaaa ttcaccttta
     8101 atcttgaacc tttagtggca aattcttaca ctagtctagt ttcaaattta ttaaaagtgg
     8161 atgaaaaatt tattgtctta tcacaaaatt caaaaaaaac catacaaacc cctttaattt
     8221 ctcaaaataa atacaatttt cctaaagaaa aaattcacat tgcagaatta gaacttatag
     8281 cttttttaaa acagcatcca gatatatgta acgattttaa gcaaattagt gatagtgttt
     8341 gttttaaaca taagatttta ttggataaaa ttttagaaaa aaaaggttat gaagatagtg
     8401 atattagaga atttgaaagt aaaaatattc gaaaaaattt aaactatagc gaattcttgt
     8461 taggtatttg caaggttaat ttagcttttt taaacaatgt aaaaattaaa aattctacac
     8521 tcgca
//
LOCUS       DAPIWU010000068         8327 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.068, whole genome shotgun sequence.
ACCESSION   DAPIWU010000068 DAPIWU010000000
VERSION     DAPIWU010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8327
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.068"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            66..446
                     /locus_tag="RJ285_001267"
     CDS             66..446
                     /locus_tag="RJ285_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384034.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYNEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKKFYKLKIDGIILKDNIDNFPKN"
     gene            491..4003
                     /locus_tag="RJ285_001268"
     CDS             491..4003
                     /locus_tag="RJ285_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HDV7384035.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINPQRGSY
                     APKEEAIGILLPASFVSSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAIAVILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVNPNNYENLKANEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(4011..4922)
                     /locus_tag="RJ285_001269"
     CDS             complement(4011..4922)
                     /locus_tag="RJ285_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDV7384036.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
     gene            complement(5119..5204)
                     /locus_tag="RJ285_001270"
     tRNA            complement(5119..5204)
                     /locus_tag="RJ285_001270"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5168..5170),aa:Leu,seq:gag)
     gene            complement(5240..5578)
                     /locus_tag="RJ285_001271"
     CDS             complement(5240..5578)
                     /locus_tag="RJ285_001271"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDV7384037.1"
                     /translation="MKKVLFLLLACAAVAFAAEINAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            5812..7146
                     /locus_tag="RJ285_001272"
     CDS             5812..7146
                     /locus_tag="RJ285_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7384038.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFAMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            7159..>8327
                     /locus_tag="RJ285_001273"
     CDS             7159..>8327
                     /locus_tag="RJ285_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7384039.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFILSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNVITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAISMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPL"
BASE COUNT         2732 a         1057 c         1393 g         3145 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaaatgct tattattgga cataaattat taaaaaattt agatttttct tttattgaaa
      121 gtgttgaaga agttaaagat aataaagttt attgtattgt ttataatgaa aaattgattt
      181 cttatttaag tcaaaatgat tttgaatttg ctattttagt tcaaaataaa gatgagatat
      241 ttttagccaa tgctttagga gctaagtttt tgctttgtaa tgataaaaaa cttgcaaaat
      301 ttgctagtaa ggttgcagaa ttttatgttt ttgatagtag ggttttaatg attgttgata
      361 aattagagaa ttttaaaaaa ttttataaat taaaaatcga tggaattatt ttaaaagata
      421 atatagataa ttttcctaaa aactgataaa ttcttttgta aaataagcgc taattgacga
      481 ggtttaaata atgcaaaaaa aatctttttt gaaaatttac ggattaattc cttttttact
      541 tatagcattc atcaatgctt tcgtggattt gggacataaa attattattc aaaatactat
      601 ttataaggcc tatgaaggaa gtgagcagtt atttttaaat gctatagtta atgctttgat
      661 tttacttcct tttattctta tgctttctcc ttcgggtttt ttagcggata aatatccaaa
      721 aaatattgta atgaaaattt cagcaatttt caatgttata ctcactttaa taatttgcat
      781 ttgttactat agcggtgctt tttggatggc ttttattttt acttttataa tgggagcaca
      841 agcagcgatt tattcaccaa gtaaatacgg ttttattaaa gaactcgtgg gaaaagactt
      901 tcttgctatg ggtaatggtg taattaatgc ggtaagcatt gtggcaatct tagcgggaat
      961 ggctttattt tctttaagct ttgaaagtct ttatagttct atgtataatc aaacagatga
     1021 aattttaaaa gaagtagcgc ctttaggaat tgtgctaatt ttattttctt gtatcgaagt
     1081 attttttgcg tggcgtttac ctaagctcaa acaaacaaat aaagatttag tttttaataa
     1141 aaaagactat attcgtggaa aacttctaat aaataatctt aagcttgttt ttaaaaataa
     1201 aactatttgg ctttgcataa ttggaatttc atttttttgg gctatatctc aactttatct
     1261 tgtcagcttt cctgtctttg ctaaaaatga acttttcata gaaaatactt tttatgtgca
     1321 aatttcactc gctttttctg gtataggagt gattttaggc tctttagtag ctggtaaatt
     1381 ttcaaaaaat tatatagaac ttggatttat tccacttggt gcattgggta tgtttttaat
     1441 ggctttttta atgccttatt ttataagttt attaagttat agttttttat ttttcttttt
     1501 tggattttgc ggagcccttt ttatcattcc tttaaatact ttaatccaat ttcatgctaa
     1561 agaaaatgaa ttaggacaaa ttcttgcagg aaataatttt tttcaaaata ttgccatgtt
     1621 gggatttttg ctcttggcaa ctttatttgt aaaatttgaa atcaatgtga tttatttgtt
     1681 ttattttatt gctttggtaa cctttatagg aagtttttac atacttttaa aactcccctt
     1741 ttctttagtg cgtatacttt taagcatagc ttttttacaa cgataccgtt tacttgtgga
     1801 aggttttgaa aatataccag aaaaaggtgg agctttactt ttgggtaatc atatttcttt
     1861 tattgattgg gctgttgtac aaatggcaat tccaagaaaa atttattttg ttatggaaag
     1921 aagtatttat tctaaatggt atattaaaat ttttcttgat aaatttggta ttattcctgt
     1981 atcaagtaca ggaagtaaga cgagtttaga actgatagca aagcatatta aagaaggtaa
     2041 tttagtttgc ttatttcctg aaggtacact ttcgcgacat gggcaattaa atgaatttaa
     2101 agcaggattt gaattagctt gtgaatgttt aagtgaagat gatggaaaaa ttattccttt
     2161 ttatataaga gggctttggg gtagcgcttt ttcaagaagt gatgaagaat tttcagcaag
     2221 aaaccgcact ttaaataaaa gaaaaattgc tatagctttt ggtaaagcta tgcctttgca
     2281 ttctaaaaaa gatgaagtta aagctaaagt ttttgaactt tcttttatgg cttggaaatc
     2341 acaatgcgaa gctatgcata ctatagcaag agcttggata gatacagcta aaaaaaatct
     2401 aaatcaaata gctattatcg atacactagc tggagatatt tcttatagaa aaatgttgac
     2461 tcttagttta tttcttaatt tttttattaa aagaaaatcc aaagaattaa acattaaccc
     2521 tcagcgtgga agttacgctc ctaaagagga agctatagga attttactac ctgcttcttt
     2581 tgtaagttct ttaaccaatc tatctgtttt aatcgcagaa aaaattgcag taaatcttaa
     2641 tttcactgct ggagaaaaag ctctaaaagc agctataaaa aatgcgcaaa tttcacaaat
     2701 ttatacttct aaaacttttt tagaaaaatt agcaaataaa ggtataaacc taaatttcga
     2761 tacaaatata catttaattt attttgaaga tattgtagaa gattttaaaa tgcaaaaaac
     2821 taaaattttt agcatgatgc tagcagttag tattatacct agttttatac tcaaaagcat
     2881 cttcactcct tcaaaaaaca atcttgccat cgcagttatt ttatttagta gtggaagtga
     2941 aggttctcca aaaggtgtta tgctcaataa ccgtaatatt ttaagcaata tagcacaaat
     3001 ttctgatgtg ctttgcacaa gaaataatga tgtcattctc tcatctttac caccttttca
     3061 tgcttttgga cttaccgtaa ctacattttt gcctttgctt gaaggtatta aaagcatcac
     3121 tttttcagat ccaaccgatg ccttaggggt tgccaaagct gttgctaaaa ataatgtcac
     3181 tattatgtgt ggaacttcaa cctttttagg aatttatgca agaaataaaa agcttgatgc
     3241 tttaatgttt gaaagtttaa gaatagttgt atcgggcgct gaaaaactaa aaaatgaagt
     3301 aagaactact tttgaaatga agtttaaaaa aagcattttt gaaggttacg gggctacgga
     3361 aaccacgcct gtggcgagtg taaatttgcc aaatcatttt gatgtggatt attggcttat
     3421 acatcgtgcc aataaagaag gaagcgtagg aatgcctcta cctggaactg cggtacgtat
     3481 tgttaatcca aataattatg aaaatttaaa agcaaatgaa gatggactca tacttatagg
     3541 cggtcatcaa gttatggtag gctatcttaa tgacaaagaa aaaaccgatg aagtggttaa
     3601 agaaattgat ggcataagat ggtacaacac gggagataag ggacatttgg atgaagatgg
     3661 ttttttatat attgtcgatc gttattctcg ctttgcaaaa attggcggag agatgatttc
     3721 tttgggtgca atagaagaag aaattgccaa atttatagac actgaagtgg ttaaattttg
     3781 tgccacatct ttagaagatg agaaaaaagg ggaacaaatt gttttactca tagaatgcaa
     3841 taatgaaatt tttgaaggag tatgtgaggc tataaaaaat tctaatatac ctacactttt
     3901 taaacctaga tattattttc aaatagaaaa aattcccctc ctaggttcag gaaaagttga
     3961 tcttaaaaaa gttaaagaat tagctaaaaa tttagccata taatttgagc ttataacaaa
     4021 gtccaaatta aaattggcat agaaacaaaa gcaaaaagaa ctccaaaggc tacagcactt
     4081 acggctaaat tactatctag tttagctttc attaccatag ctcctgctaa agtcatagta
     4141 ggagctgcac tttctataat agcaacgatg gtagaatctt ttaattccaa attaaatatt
     4201 tttaaacaaa atacaaaaaa taaaggagct aaaatcattt tagcaaagat gacaactatt
     4261 gtaggtttgt aagaggtttt aatcgccata aagccaagtc ctaaacctat agcaaaaagt
     4321 gcaacagggg ttgcagaggc accaaataaa cgaataggag agaaaataaa ttcaggtaaa
     4381 gtaatcaatt tacacaaaaa accaaaaagc aaagctaaaa aaggtggaaa actaagaatt
     4441 tttttaacat tagcaagcaa actgactttt tctccatttc ccaaagaaag tataaaaggt
     4501 ccaaaaagtg atataggtaa agttgtggct aaagcatcgt aaaatataac ttcagcgcta
     4561 aattgtgggt cattaaatat accagcaaca ataggcatac ccacaaatat agtatttcca
     4621 aaacaagaaa gcaaaaacat actgactaaa gttactttag aaaaatgaaa aacttttcca
     4681 ataagaatag caaaaaaagc tgctagtata cagctaaaca atccaataaa aataaaaata
     4741 atcaatgaaa aatcaaaatt taaatgatat gctttatcga aaatcaaaca aggtaaagca
     4801 aaaataatag caaaatctaa aaaagtccta gcttgttttt gcttcaaaac gccaattctt
     4861 ttggcaaaat atccgcctgc aagtaaaata aaaattgtaa ataatggtat aaaaacaaac
     4921 attgagtaat cctttttaag ggatggtttt tgaaaacgga tagaattata ttctttatac
     4981 ttaaaaaaaa tcttaatatt ttttaagttt tttaaaaaaa ccaatatttt ttattttttg
     5041 taactttaag aaattgtaag ttgaaatttg attttgaata gttagtattt taagttgaat
     5101 gattataatt ttaaataatg gtgcggttag cgagatttga actcgcacac gcggagcgca
     5161 ccaccccctc aagatggcgt gtctaccaat tccaccataa ccgcatagaa aaaagcccaa
     5221 aaaagggctt taataagttt tattgtaaaa ctataaaagg atttgcgtaa agtgctatta
     5281 gcgcgataac aagagcatag ataacttgtg cttcgatcat cgctaaagcg ataaacatag
     5341 ttgtcattaa ttttggccca agaccagggt ttctagctgt tcctgcaatt gttgccgctg
     5401 cagtattacc cataccgata gcaccaccaa gtgctgcaac accaagacct aggcctgctg
     5461 caagaactga aaatgcttta atccatacat taatagcttc ttgctctact ggagcattaa
     5521 tttcagctgc aaaagctact gctgcacatg ctaataataa aaaaagaact tttttcatta
     5581 tcttaacctt tctataaaaa aaattttttt caatttttaa atcagttcgg cttgcgtatc
     5641 cctacttaag acttaaaaat aaagccgaat tataaccaaa ggtatcttta tttttattga
     5701 aatttacaaa aattcacatt tttgatttaa atttgattgt tttcaataaa gcttaaaagt
     5761 ttttttgctt taataatatt ttaaaataat ttttaagtta aggttgcaac attgagttct
     5821 aaattttcaa aaataggttt cattttagcg gtagcaggtt cagcggtggg cttgggtaat
     5881 gcttggaaat ttccaacact agtaggtcaa agtggtggat ctgcttttat cttgctttat
     5941 ataattctta ctttaggtgt aggttttgtg atatttttag ctgagcttag cataggaaaa
     6001 attagtgaaa aagatccggt taatgcctat gaaaagttag caccttcaaa taaaaaagct
     6061 tggtcttatg ttggttttgc tatggtgggg gcgattttaa tagtttcttt ttataccttg
     6121 gtgattggct ggatagttaa atatgtgttt ttaagtatca ctggaaattt gcctatggat
     6181 ctagaagtaa gtaaagcaca gtttggattt tttataagtg aggatttttt aagtcagttt
     6241 atttgtttta ctttggtttt tttatgtgtt ttttatattg tttctaaagg tgttaagaat
     6301 gggattgaaa agttaaatgt ttggatgatg ccttcattgt ttattttact tattttgatg
     6361 cttgtttatg ctattagcaa agatggtttt ataatggcgg ttaaatttct ttttgtacct
     6421 gatttttcca aaatcaacac ttcaaacgtt cttgaagcct taggacttgc tttttttagt
     6481 ctttctttgg gcgttggaac gattattact tattctgcta gtctgcctga taaaactaat
     6541 tttattacca gtactttaaa tattattttt atcaatcttt tagttggttt attaatgggt
     6601 ttggttgttt ttacttttat ctttgaattt ggttacaatc ctaatcagca aggaccagga
     6661 cttgttttta tttccttagc tactttattt gaaaaaattg gagtgattgg ttgtattttt
     6721 ggagcagcgt tttttatttc tttaatcttt gctggtatta cttcagctgt ttcaatgata
     6781 gagcctttca ctttttacct tattaatact tttggtatga gccgtaaaaa agctttgatt
     6841 ttaataggaa ttgttgttta tattttagga atgttgtgta ttttatcttc tttaaaaagt
     6901 actcagtttg gattttttgg aatgagtttt tttgatttgc ttgatagtgt ttcaagcaag
     6961 gttattatgc ctttaggtgg aattttggca gctatttttg tgggatttgt gatgaaaaaa
     7021 gaagctttaa aaattttatt taaaccttat atgaggggta tattttttga actttggtat
     7081 gtgtttttga gatttatttc ccctttggct gttgttatag ttatgatagc cgctttttta
     7141 aagtgagttt gaaaaataat gagaacatat ttttcaaaaa tcggttttgt attggctgtt
     7201 gctggtggag ccgttggttt aggtaatgct tggaaatttc caactttaag cgcagaaaat
     7261 ggtggttttg tttttgtgct tttatatttg ttttttactt taactatagg atttagtatt
     7321 tttttggctg aagtggctat gggacgttta agtaaaagtg atcttgcaaa tgcttattca
     7381 aatcttgcca taaaatatgg caatagatgg cgatatggcg gcgtttttat gttaggtggt
     7441 atttttatcc tctcttttta tctagttatc atgggatggg ttttaaaata tactgtagtg
     7501 agtctttatt atcttcctaa aactttagat gaagcagcaa gtaattttca gaatgtaatt
     7561 actacaaatt tgacaagttc tgtttttttc ttcactttat ctttttttct tactttattg
     7621 atagtatcta aaggtttaat caaagggatt gaaaaattaa acgttgttat aatgcctagc
     7681 ttatttttaa tgcttgtttt tatgttgttt tattgcatgg gatttaagca aggttttgca
     7741 aatgcttttt cttatttatt ttatcccgat ttttcacatt ttaaattcag ctctattgcc
     7801 gaagctttag ggcttgcatt ttttacctta tgcttgggaa taggttgtat agttacatat
     7861 tcatcggcct tggataaaaa aacaaatttt ataaaaagtt cagtgtatat tgttttgatt
     7921 aatttattga tttcttttat tatgggactt attgttttta cttttatctt tgaatttgga
     7981 gccgatccgc atactcaagg agcaggaatt gtttttgtat ccttgatgag tttgtttaat
     8041 caacttggag ctttaggcta tatttttgca ttttgttttt tcttagcact tttttttgct
     8101 ggtattactt cagctatttc aatgatagag cctttaactt tttatatgat taataactat
     8161 caaatttctc gtgttaaagc tctattttta ataggtttat ttgtttttgt ttttggaatt
     8221 tgttgtatct tgtcattaaa tttaaatttt ttttctatgt ttagtttttt tggcaaagat
     8281 ttttttactt tattagataa attaacttca aattttttac ttccact
//
LOCUS       DAPIWU010000069         8161 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.069, whole genome shotgun sequence.
ACCESSION   DAPIWU010000069 DAPIWU010000000
VERSION     DAPIWU010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8161
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.069"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..1060
                     /locus_tag="RJ285_001274"
     CDS             <1..1060
                     /locus_tag="RJ285_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDV7384040.1"
                     /translation="YIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIIFQLKQFN
                     IQSNQIKTLFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWLKNM
                     KNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDTKLD
                     NKKMLEFELLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQLLE
                     LDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYAAKNLKNYIE
                     NPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYKNKR
                     YFNPNFLISDELTLYLSS"
     gene            1119..1535
                     /gene="tatB"
                     /locus_tag="RJ285_001275"
     CDS             1119..1535
                     /gene="tatB"
                     /locus_tag="RJ285_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDV7384041.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            1528..2265
                     /gene="tatC"
                     /locus_tag="RJ285_001276"
     CDS             1528..2265
                     /gene="tatC"
                     /locus_tag="RJ285_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDV7384042.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNIIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKVGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPVPKDKESNE"
     gene            2258..3286
                     /gene="queA"
                     /locus_tag="RJ285_001277"
     CDS             2258..3286
                     /gene="queA"
                     /locus_tag="RJ285_001277"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDV7384043.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLHDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKEDLKARVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYTRTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(3275..4240)
                     /gene="lpxD"
                     /locus_tag="RJ285_001278"
     CDS             complement(3275..4240)
                     /gene="lpxD"
                     /locus_tag="RJ285_001278"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDV7384044.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(4237..4701)
                     /gene="ilvN"
                     /locus_tag="RJ285_001279"
     CDS             complement(4237..4701)
                     /gene="ilvN"
                     /locus_tag="RJ285_001279"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDV7384045.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(4698..6398)
                     /locus_tag="RJ285_001280"
     CDS             complement(4698..6398)
                     /locus_tag="RJ285_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HDV7384046.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISSKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(6416..6859)
                     /locus_tag="RJ285_001281"
     CDS             complement(6416..6859)
                     /locus_tag="RJ285_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HDV7384047.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(6871..7890)
                     /locus_tag="RJ285_001282"
     CDS             complement(6871..7890)
                     /locus_tag="RJ285_001282"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HDV7384048.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEACGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            7983..8057
                     /locus_tag="RJ285_001283"
     tRNA            7983..8057
                     /locus_tag="RJ285_001283"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8015..8017,aa:Gln,seq:ttg)
BASE COUNT         2732 a         1488 c         1106 g         2835 t
ORIGIN      
        1 ttatatccat attccatttt gtgaaagcaa atgtaattat tgcgctttta caagtttgaa
       61 aaaaaatgat tatgaaaaag cctattttaa ggctttaaaa gaagatatta tttttcaatt
      121 aaaacaattt aacattcaat caaatcaaat taaaacctta ttcataggcg gaggaacacc
      181 aagttgtgtt aatgcgtata attatgaaga tatttttaaa attttatatc ccttactaga
      241 taaaaatgta gaaatttcat gcgaagctaa tcccaactca gcaacattaa attggcttaa
      301 aaatatgaaa aatctaggag ttaatcgcat ttcttttgga gttcaaagtt ttcatcctaa
      361 aaaacttcac tttcttggaa gaattcacaa tcaagaaatg attatcaaaa cattagaaaa
      421 cgcaaataaa gtaggtttta aaaatatcaa tttagatctt atttatgata cgaaattaga
      481 caataaaaaa atgcttgaat ttgaactctt acacttaaaa caaatcaagg atttaatcac
      541 acaccttagt gcttataatt taaccataga atcaaacaca gcctttgcta aaaaagaaca
      601 tttcaaaaaa aatgctccta atttaatgaa atttttcatc aaacaacttc tagagcttga
      661 cttttttcaa tatgaaatca gtaatttttc aaaaaccaaa gcccaaattt gcaaacataa
      721 tcttgcttat tggcaaggaa aaaactacct agcttgtgga ttaagtgcgg taggatttta
      781 tgaaaataaa cgtttttatg cagcaaaaaa tttaaaaaat tacatagaaa atcccacttt
      841 tagatctata gagcaactaa gttccaaaga cttgaattta gagcacctat ttttaggact
      901 tagaagtata gtagggattg atgaaacaaa actcaatcaa tggcaaaaag acaaaataaa
      961 tatattatta aaagaaaaaa aactttttta caaaaataaa agatatttta atcctaattt
     1021 tctcattagc gatgaactta ctttatatct ctcatcttaa atttaagttt tttaagtaaa
     1081 atatttattt aaaatatcaa atcaaagagt aatgattaat gagttttggt gaaattatag
     1141 ttattttagt tgtagcgatt ttagtcttag gacctgataa acttccagaa gctatagtac
     1201 aaatagcaaa aattctaaag gctgtaaaac gcaacataga tgatgcaaaa tcaagcatag
     1261 aaaaagaaat acgcatcaat gacttaaaag aagaagctaa gaaatacaaa gatgaatttt
     1321 caagcactaa tgaaaatata cgcaaaaaac tcagctttga agaatttgat gaccttaaga
     1381 gagatatttt agataaaaca aaggtagatt taacctttga tagcagagat gataaagtaa
     1441 aaaataacct tagcggacaa aatttaaata cagaagaaaa accaaatctt agcaaattag
     1501 aaacacaaga taaaaacgga aaaataaatg tttgaagaat taagacctca tttaatagaa
     1561 cttagaaaac gcctttttat aagcgttgct tgcattgtag ttatgtttat tgtatgtttt
     1621 gctctacgaa gctatatctt agatattcta aaagctccac ttatagctgt tttaccagaa
     1681 gtagccaaac atgtaaatat aattgaagta caagaagcct tatttaccgc aatgaaggtt
     1741 agtttttttg cagcctttat cttttctcta cctgtaattt tttggcaatt ttggaaattt
     1801 gtagctccag gactttatga taatgaaaaa cgccttgtgg tgccttttgt tagctttgcg
     1861 agcattatgt ttgccttggg ggcttgtttt tgctattttg ttgtagtgcc tttggctttt
     1921 aaatttttga ttaattttgg tttaaatgaa gattttaatc ctgtaattac cataggaact
     1981 tatgtagatt tttttacaaa agttgttgtg gcttttggct tagcttttga aatgcctgta
     2041 attgcctttt tctttgctaa agtcggactt atagatgata gttttttaaa acgccatttt
     2101 cgcatagctg ttttagttat ttttgttttt tcagccttta tgactccacc tgatgtttta
     2161 tctcaatttt taatggcagg accactttgc ggactttatg gactttctat tttaattgtt
     2221 caaaaggtaa atcctgtccc aaaagataaa gaaagtaatg aataaagact tacttctttc
     2281 aagctatgat tacactctag ctaatgaact catagccaac tatcctacaa atccaaaaga
     2341 agatgctagg cttttggttt ttgatcgcaa aaacaaagaa atttttcaca ctacttttaa
     2401 aaatttacac gactttttac ccaactgcgc gatttttttc aatgatacca aagttattaa
     2461 agcaagaatt tatggtaata aagcaagcgg aggaaaaata gaacttttct tacatcaacc
     2521 ttttttaaat tctcacaatc cactttttct agctcaaatt aaagggcgcg ttaaaaaaga
     2581 tgaaatctta tattttaaag aggatttaaa agcgcgcgtt gtagaacttt taaatgatgg
     2641 tcttcgaaaa gttcaatttt ttcaaaatga taaaacctta gacacctcaa atctttacaa
     2701 cctgcttgac aagataggac atataccctt gcctccttat attaaaagag aggatgaaaa
     2761 aagtgatttg aaagattatc aaagtatctt tgcaaaaaat ttaggcgcag tggctgctcc
     2821 gactgcaagt ttacatttta gtgagactat gcttgaaaat ttaagaaaaa aacacgaaat
     2881 ttatcattta accttgcatg taggagctgg aacctttaaa agcgtggaat gtgaaaatat
     2941 acaagagcat aaaatgcata gcgaattttt taatattccg cagcaagcat gtgaaattat
     3001 agattctaaa caagctattt taggcgtagg aacaacggta acaagaacca tagaatatta
     3061 tacaagaact aaaacaaaaa atggtttttg tgatcttttt ttacacccgc aaaatccacc
     3121 tataagacaa aatcatcttt taaccaattt tcatttacca aaatctactc ttatcatgct
     3181 agtttcagct tttatcggta gagaacagtg tttaaaactt tatgaactcg ccataaaaga
     3241 aaaatatcgc ttttactctt atggcgatgc gatgctaatc ttgtgatttt tctttaaaat
     3301 ttattgctat tttagcttga agttttagcc aatctttttg aagcatgata ggaaaacctc
     3361 cataaacacg cccgccttct aaatttttac tcacaccgcc tcttgcagct atagtgctaa
     3421 aatcgcctat ttttaaatgt ccactcgttg cactttgacc acccataata acattgcgtc
     3481 ctaactcact tgaacctgaa attccagttt gcgccacaat gatacaattt tgacctatat
     3541 tgcaattatg tccgatttga actagattat ctaccttagt acctgctttg ataatagtac
     3601 tatcaaaaac tgctctatct atagttgtac aagcccccac ttctacaaaa tcttctaaaa
     3661 ccacgttgcc attatgataa attttataat gttcgccgtt tttattgtgc gcataaccaa
     3721 aaccgtcact tcctattaca caattagcaa gcagatgaca ttttttaccg attttagtat
     3781 cattataaat cactacatta ggatgaataa tactctcatc accaatgctg acattatcgc
     3841 ctatataagc tcctgccata atgattacat tttcaccgat atttacatta tcacctatat
     3901 aaacattagg catgattctt gcgctttttg cgatattttg tactttttct ttagctgtgc
     3961 ttatcaaagg tttagcaaaa agcttgctta aaaaagcaaa actcaaatgt ggactttgag
     4021 taatcaaagc tttagtatct ttaggtacta aattttcata ttctttagat actaaaatag
     4081 cagcagctcc tgtgtgaggt atatctttgg tatttttctc accatcacaa taagtaagct
     4141 ctgtaaaatt tgctttcaat aaagaattta aagcactgat ttctatatcc tcgcctttat
     4201 attccaagct taaaaattct gctatttcac ttaatttcat ttaatctcca tcaaaacaga
     4261 tccactgcga actatatcac taggattgta ttttttaatt gtttttaaaa aattatcaat
     4321 gcgatttgca tcatcagcaa ccattaaaaa caaaaaattc tcattgctat ttgcaatagt
     4381 accattataa gctttcaaaa cggcatcaag tccacctaaa ttttcattta aaggaatttt
     4441 caccaaagcc atttctttgt caataaattc ttcactttct atcactttat aagtaggaat
     4501 gagcttatga agttgtttga ctatctgctc aaaagttctt tcatttcctg aggtgactat
     4561 attaatacga gaaaattctt tattttccaa aggcgctact gtaagcgagt caatattata
     4621 acctcttcct gaaaaaagtc ctactatacg agataaaacc ccatgctcat ttaaaacaat
     4681 tactgataaa acccttctca ttgtctatcc tttgcctttg gtaaaatcat attataaatc
     4741 gcacctcctg caggcaccat aggtaaaaca tcttcaaagc gatcaatttt tacatttaaa
     4801 agagaggttt tatcactttt taaagcttgg ctaaaagctt gaatgaattc ttctttgctt
     4861 gaaatttcat aaccttcaca accaaaacct tgagcaattt tgataaaatc aggctgagtg
     4921 cttaaatcag tttgtgaaaa atgctcttta taaaacatac tttgccattg tcttaccata
     4981 cctaaaaagg cattatttaa aataatattt atagttttta taccatactc ataagcagtc
     5041 ataagctctt ggatattcat taaaaccgat ccatcaccta cgaaattaat caccacttct
     5101 tcacccacgg caagctttgc acccaaagca gcaggtaaag aatatcccat agttccttgc
     5161 cctccacttg ttgcaagttg tcttggataa ttaaaaggat aaaactgtgc cacccacatt
     5221 tgatgctgac ccacatcggt aataatcctt gcatctggag ccattttcgc acattcttca
     5281 atcacccatt gcggttttaa aatctcattg ctatcttcat aagaaagcgg ataaagttca
     5341 ttataacgct ttaaagtttc gtgccattct ttaaaagttg tgttgaaatt ttccttttta
     5401 agctcttcta aaagctcttt aagaacttct ttaatatctc ctactatagg ataatgcgca
     5461 ttgataatct ttgaaataga actaggatca atatcaacat gaactatagt cgcatgttta
     5521 gcaaattcac ttgtttttcc tgtaatccta tcatcaaatc tcgctcctac actcacaagc
     5581 aaatcacact cacttaaagc catattagca gcatagcttc catgcatgcc tgccatttta
     5641 agattaaaaa catcatcact tcttaaagtt ccaagcgcca tcaaagtttc aactgctgga
     5701 atttttgtaa attttataag ctctctgatt tgctcgcttg cattagaact gatgcaacct
     5761 ccacctaagt aaaacaaagg tctttttgct tcttttaaaa gctctgcaaa ttttttaatt
     5821 tgctttgagt tacccttata aacgggctta taagtcttca tggaaatttc tttagagtat
     5881 tcccaaagtc ccaaagttgc acttacgtct tttggcacat ctatatgcac aggcccaggt
     5941 ctaccacttc ttgctatata aaaagcctct tttaaaatgc gtggaaactc ttctatacaa
     6001 gtaactaaat aattatgctt tacacaaggt cttgaaatgc ctactgcatc aatttcttga
     6061 aaagcatctg taccaataag agaatttgcc acctgccctg aaatcaacac caaagggata
     6121 gaatcgctat aagccgtagc tagacctgta atagtatttg taaaacctgg tccgcttgta
     6181 actatagcta cacccacttc tccgctcatt cttgcgtaag catcagcagc atgcaaagcc
     6241 gcttgttcat gacgcactaa aatatgttta aaatactttt gattgtaaat ttcatcataa
     6301 atattaagcg cagcgcctcc aggataacca aaaacaattt taacattttc ttcttttaaa
     6361 gcctcgcaaa tcattgccga accgcttaac tctttcataa taacactcca aaaaattatt
     6421 gtaaaagctc tttaagtgct aaattaagtc ttttgccatc aacactcgca cctaatttta
     6481 ttttagcttc tttcattacc aaaccttgtt cttttagtga acttacgccc aattcttcta
     6541 taagttgttt taaggctaaa gttaactcct catcacttag ttgtttaggc agataaattt
     6601 caaaaagact tatttcattt tgttcttttt gtgctaaatc ttcacgattt gccttaagat
     6661 aaagttcgat tgcgtctttg cgttttttga tttcacttgc aatgatttta taaattcttt
     6721 cattatccaa ctctattctt tcatccactt ctatttgctt aaaagctgca tttagagttc
     6781 ttaaactatc tcttttaaaa tcatcttttt gtttcattgc ctctttgata tcgtttaaaa
     6841 tttgttcttt taaagtcatt tttttccttt ttagttaaaa ttacaagctt taagatttaa
     6901 accaaaacct tctaagccta tatagtcttt atcacaactt tgagataaaa gtttaatttc
     6961 ttctatacca aaatatctta aaatctgtgc tcctatacca tagtttttgt attgagtagt
     7021 actggatttt tctccttgca tgaaaactat aacgccacca ttttcactaa gaaatttgat
     7081 ttgctctaaa agttttgaaa atttatctga agttaaaagc tcaaaatcac taccactgat
     7141 atgaaattta acattttcac attttttgat atctttaaag caaaaagcta tgtgttgggt
     7201 ttgattatga tcactaaaga taaatttttc tgctttaaag cctgctaaaa cactttgact
     7261 tttttcttca agcttaataa ggctttcatg ttttaggcga tattctataa gatcgcttac
     7321 ggctatcata tttaaatcat gtttttggca aaaaatttct agatcttctc ttcttgccat
     7381 atctccatta tcttttacaa tttcacaaat cacacaagca ccttttaatc ctgctaattt
     7441 acaaagatca accgtgcctt ctgtatgacc tgtgcgttct aaaaccccac ctttttttgc
     7501 gattaaagga ttgatatgtc ctggtcttac aaaatcactc gctttagcat tatcatcggc
     7561 aaaaatttgt atagtcatat ttctttcata ggcgctaact cccgttgtag catcttttgc
     7621 atctacggtt atagtaaaag cagtttcgtg gtttgaagta tttttaggca ccattaaagg
     7681 aagttcaaat ttttttgcca aagtttcatc taaggctaca caaaccacac cacaagcttc
     7741 ttttatcatg aaatttactt tttcttgagt gctaaattgc gcaggaaaga ttaaatcgcc
     7801 ttcattttct ctatcttctg catctaccat aacaagcatt tttcctgctt gtaaatcctt
     7861 aatcgcttgt tctacgctaa caaatttcat ttttatttcc tcaaaatttt taaaattata
     7921 acttaaattg cttgacaaat aaattaaaat tcattataat cacactttta aaaaatattt
     7981 attggggtat cgccaagcgg taaggcaaca ggttttggtc ctgtcattca ggggttcgaa
     8041 tccctttacc ccatccactt cttattttat atttcaaaga tcttatatgc cgcgaagtag
     8101 agcagtggtt agctcgtcgg gctcataacc cgaaggtcgg gagttcaaat ctccccttcg
     8161 c
//
LOCUS       DAPIWU010000070         8148 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.070, whole genome shotgun sequence.
ACCESSION   DAPIWU010000070 DAPIWU010000000
VERSION     DAPIWU010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8148
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.070"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            57..833
                     /gene="surE"
                     /locus_tag="RJ285_001284"
     CDS             57..833
                     /gene="surE"
                     /locus_tag="RJ285_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDV7384049.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            823..1482
                     /locus_tag="RJ285_001285"
     CDS             823..1482
                     /locus_tag="RJ285_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HDV7384050.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLDKK
                     S"
     gene            1466..1924
                     /locus_tag="RJ285_001286"
     CDS             1466..1924
                     /locus_tag="RJ285_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7384051.1"
                     /translation="MIRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(1987..2367)
                     /locus_tag="RJ285_001287"
     CDS             complement(1987..2367)
                     /locus_tag="RJ285_001287"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HDV7384052.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTVTKITNYEKHGAIF"
     gene            complement(2364..3212)
                     /locus_tag="RJ285_001288"
     CDS             complement(2364..3212)
                     /locus_tag="RJ285_001288"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HDV7384053.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(3223..4047)
                     /gene="panB"
                     /locus_tag="RJ285_001289"
     CDS             complement(3223..4047)
                     /gene="panB"
                     /locus_tag="RJ285_001289"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HDV7384054.1"
                     /translation="MRKSILSFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            4264..5025
                     /locus_tag="RJ285_001290"
     CDS             4264..5025
                     /locus_tag="RJ285_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-461"
                     /protein_id="HDV7384055.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFLRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKS"
     gene            complement(5123..6007)
                     /locus_tag="RJ285_001291"
     CDS             complement(5123..6007)
                     /locus_tag="RJ285_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HDV7384056.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(6004..6678)
                     /gene="modB"
                     /locus_tag="RJ285_001292"
     CDS             complement(6004..6678)
                     /gene="modB"
                     /locus_tag="RJ285_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDV7384057.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(6671..7072)
                     /locus_tag="RJ285_001293"
     CDS             complement(6671..7072)
                     /locus_tag="RJ285_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HDV7384058.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(7069..7818)
                     /gene="modA"
                     /locus_tag="RJ285_001294"
     CDS             complement(7069..7818)
                     /gene="modA"
                     /locus_tag="RJ285_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7384059.1"
                     /translation="MKKFIVFFGILFFTLHLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(7869..>8148)
                     /locus_tag="RJ285_001295"
     CDS             complement(7869..>8148)
                     /locus_tag="RJ285_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="malonyl-[acyl-carrier protein]
                     O-methyltransferase BioC"
                     /protein_id="HDV7384060.1"
                     /translation="IKQSTGFGLNYFSLNELEQIFKVYFNEVKITQELVELSFDNALE
                     VFRHLKLSGVNSLGFYPLNKCFLKDFEEKFQNKLTYHPVFILCKNDIK"
BASE COUNT         2907 a         1260 c         1190 g         2791 t
ORIGIN      
        1 tgaagcttta aaaaaatatg ttaaaatcca gatttttatc ttttgcaagg aagacaatga
       61 aagaaattct tatcactaat gacgatggtt atgaaagcga aggacttaaa aaactcatta
      121 agatgttaac aaaagaattt aaagccaaga tcaccatagt agctcctgct agtgaaaaat
      181 cagcttgttc gcactctata accctaacca aacctttgcg ttttgttaaa gtgggaaaaa
      241 gattttacaa acttgatgat ggcactccag cagattgtgt ttatcttgct ttgcatgctt
      301 tatacaaaaa gcgtttgcct gatcttgtaa taagtgggat taataaaggt gctaatgtag
      361 gcgaggatat tacctactca ggaacttgcg caggagctat ggaggcggtt ttacaaggaa
      421 ttcctgctat cgctctttct caattttata aaaaaagcga aaaagaacta gactataaaa
      481 atgctttaca aattaccaaa aaaatcattc aaaatatttt tgataaaggt tttcctttgg
      541 aaaaaaaaga atttttaaat atcaattttc ctgcaaaatc aaaaatcaaa ggcattaaaa
      601 tttgtaaagc aggcaaaagg gtttataatt ttgaagccca ttcaaatgtc aatccacgag
      661 gagtggagta ctattggctt gcagcggcga atttagactt tgaagatgag aaaaatagcg
      721 atattgcctt gcttaaaaaa ggctacgcta caataacacc tataatgctg gatcttacag
      781 cttatgaaag aatgaaaaaa gttaaaaaat ggttaaaggc aaatgatgaa tgatagattt
      841 acacgtataa aatggctagt tggagaagaa aaatttcaaa aaatttcaca aacaaaagtt
      901 ttggtttgcg gacttggtgg agtgggtgga atttgcgttg atgcgcttta tcgtagtggt
      961 tttaaaaacc ttactttaat cgatgcggat aaatttgaaa ttaccaatca aaatcgccaa
     1021 attcatagcg aaaatatagg cgaagaaaag gctaaagtat ttgaaagaat ttataaggtt
     1081 aaaggtatag tcagtaaaat cgatgaaaat tttttaaaaa attttgattt aagcgagttt
     1141 gatcttatca tagatgccat tgatgatatt cctgcaaaag tagctttggc tcatcttata
     1201 gattttaaaa aacaaatttt tatctcctca acaggtggag ctagaaagct tgatccaaca
     1261 cgcattaaaa ctacaagtat ttttaaaact cacggcgatg ctttagcgaa aaaatttcgt
     1321 tatgagctta gaaaatcagg ctttaaggga aattttgatg tggtgttttc tgatgaagaa
     1381 gctcattgta aagaccttgg ttcatttatg ggtgtaacag cttcttttgg acttgcttta
     1441 gcttctttgg ctttaaggaa agtacttgat aagaaaagct gatattaaag atttaaatgc
     1501 ttgtttgtcg ctttttgagc aaagcgtaaa aacactttgt gctaaggatt atacaaaaga
     1561 tcaaatttgt gcttggatta aaattgatag acaacaatgg gaagaaaaat ttaaatatga
     1621 tgagatcttt gtctatgaaa aaagaggaaa aatcgcaagt tttataagtg ttaaacaaga
     1681 gcagaaattg cttgatttgc tttttactca tcctgatttt gttagacaag gtttagcaca
     1741 aaatttactt gattttattt taaaaactta tttgcataat gaaatttaca ctttcgcatc
     1801 cttaagtgct aaagattttt tcttaaaaaa tggttttgaa cttataaggg aaaacaaggt
     1861 tatcaaagag ggacaaaatt taaaaaaatt tttaatgaaa aaagatgtgg tttataaaaa
     1921 ctagaagtta agataagcaa aaataatgga ttaaaagata gaaaaaatta caaaaatagc
     1981 tagatgttag aaaatagctc cgtgtttttc ataatttgtt atttttgtaa cagtgttatt
     2041 ttcatccaca aaaacaactt ttggtttaaa tgtttttgct tcttcttcat taaaatcagc
     2101 ataagacatg atgatcacct tatctcccac ttctgcaaga cgagccgcag caccatttaa
     2161 gcatacaact ccttcttctt gcgtggctat ggtataggtt tcaaatctag cgccattatt
     2221 gacattgact acttggactt tttcgtattc taaaattcca ctcgcttgca ataatttttc
     2281 atctatactt atacttccta tataatcaag cctagcttct gttacgcttg cgcgatgtat
     2341 ttttgatttg agtaaagtga tattcatttt aatccttgta ctaaaaaatt atcaatgagt
     2401 cttgtttttc caacaaaagc agccaccgct cctaaaacat tatcagtgat attttcgata
     2461 ttttccatgg tgttaaaatc gactaattct atataatcga ttttgattag tttttctttt
     2521 tctaaaatat ctttcatagc ttggatgatc ttagaagtat ttttttctcc ctctcggact
     2581 aatttttcag ccaaaaaaat gctttgagat atagctagtg acgcttttct ttcttctttg
     2641 ctaagatata catttctaga gcttttagct aagccatctt cttctctaat gataggacaa
     2701 atttgaattt ttaaatcaaa atttaaatca tcaaccatat gcctaacgac tacgcattgc
     2761 tgcgcgtctt tttgccccat atagactata tcagggttta ggatattaaa aaatttagtt
     2821 aaaaccgtgc aaacgcctct aaaatgcccc ggtcttttag ccccgcaaag tttatcagtg
     2881 atcgtattca tatctacata ggtgctaaaa ttcttaagat acatttgagt tgcatcgggg
     2941 ataaaaacca tatcaacgcc attatcttga cacattttaa tgtcgcgttc taaatctctt
     3001 ggataactag aaaaatcttc attaggccca aattgcatag gatttacaaa gatacttact
     3061 ataaccttat cttgtgtttt ggcatgtttg actaaactta aatgtccatc gtgtaaaaaa
     3121 cccatggttg gaacatagcc tatactaagt tgatgtgatt tccaatcttt tacaatttgt
     3181 tttgcttctt tgacagaagt aatgacttgc atatttgtat ccttagtata atttatctaa
     3241 taattcatca tctaaataat caaagctgtg ctcttgggaa ggaaaaatac cgcttttaac
     3301 ttcatctcta tatttttcaa ctcctacttg aggatcaatt ttatcaaaat gctttacaaa
     3361 ttttgcttta aaatctttat ttaaacccaa aagatcgtga taaactaaaa cttgtccatc
     3421 gcagtatttg cctgaaccta tgccgattgt tggaatttct aaaatagagc ttattttttg
     3481 tgctagtttt acaggcacac attctaaaac caacatacaa gcacccgcat cttgcacagc
     3541 ttttgcatca tctataattt tttgggccga ttgtaaatct ttaccttgaa ccctatagcc
     3601 acctagcata tttacagctt gtggggttag tcctaggtga gcaacgacgg gtattcctga
     3661 ttgggaaatc aatttaatct tacttgcgat ttctataccc ccttccactt ttaccccatt
     3721 tgcgtggctt tctttgataa atcttgaggc atttaagata gcgtcacgat ctgaactttg
     3781 ataagacata aaaggcatat cagcaagtac gaaagacttt ttagctccgc gagaaacagc
     3841 tttggtaaaa atcaacattt catccatagt aacacttaaa gtatcttgca tgccaagcac
     3901 tgtcatagct aatgaatctc caaccaatat aatatctata tcgctattgt ctaaaattct
     3961 tgcactatga taatcatacg cacttaccat ggttattttt tcatttttgg cctttttttc
     4021 caaaaaacta agaatacttt ttctcattta aaatacctcg tttagctata aaatagtaag
     4081 caaaaaacta gcatataaat tttcataaat agtaaataaa cgataaaaca aaatatattt
     4141 aattaatgga ttgttttaat ggttacaatt ttagaaaatt tcagttcatg ttaaaggata
     4201 tttaaagaaa ataaagcttt aaaaagtatt ttgtttaaaa ttatttaaat agaaagatat
     4261 tttatgaaaa aaataacttt atttttactt ttcttaaatt tagtgtttgg gcaagataag
     4321 atattaaata attggtttaa agagtataat acaagcggca cttttgtttt ttatgatgga
     4381 aaaacttggg cgagtaacga ctttttaagg gctatggaga ctttctctcc cgcttccact
     4441 tttaaaattt ttaatgctct aattgcactt gatagtggtg tgataaaaac taaaaaagaa
     4501 attttttatc actatagagg tgaaaaagta tttttatctt cttgggcgca agatatgaat
     4561 ttaagttcag ctataaaata ttctaatgtt cttgctttta aagaagtggc aagaagaatt
     4621 ggtatcaaaa ctatgcaaga atatttaaac aagcttcatt atggtaatgc taaaatttcc
     4681 aagatcgata ctttttggct tgacaactca ctaaaaataa gcgctaaaga acaagcaatt
     4741 ttgcttttta gactttcaca aaatagctta cctttttctc aagaagcaat gaatagtgtt
     4801 aaggaaatga tttatttaaa aaatatggaa aatttagagc tttttggaaa aacaggtttt
     4861 aatgatgagc aaaaaattgc ttggattgta ggttttgtgt atttaaaaga tgaaaataaa
     4921 tataaggctt tcgcgctaaa tttagatatt gataaatttg aagatttata taaaagagaa
     4981 aaaattttag aaaaatattt agatgaactt gtaaaaaaaa gttaaaaatg atggctagtg
     5041 agtatttcgt aaaatgcaaa aatacttaat tgtatgattt gcgtacactt aaagtactca
     5101 ttaaaaaatt aaatttttgc tcttatttat caagttttcc tacgatgata gggttaaagg
     5161 cttttatgga tagcaaaagc gtatcgccga tttttacatc ttgataagct tttagaaatt
     5221 cctcttcact aagagtgatt ttaataatat cttgatttaa aagcaaggtt aaaaccacta
     5281 aaatatcact ttttttaatt tctagcaaag ttgcacttaa gcgtaatttt gcgctgatat
     5341 ttgaatgagt aaaaaattca tttttaggaa aatctttaat aatttttccg tttttaagct
     5401 ctaaaattct atgacttaac ttataaattt cagctagatc atgacttacc aataaagtac
     5461 ttattttaaa atactctaaa atcttggtta attcatcttg taaattggca cgcattttaa
     5521 aatccaaagc actcaaaggt tcatctaaaa gcaagatttt tggttctctt gctaaagctc
     5581 ttgctaaagc tactctttgt gcctgccccc cacttaaatg tttaggataa attttagcta
     5641 aattttcaag cttcattaag gctaaaagct cgctaacctt tgctttagaa ctagcggcat
     5701 aggcgatgtt ttcttttata ttcatatttg gaaaaagcgc ataatcttga aaaacaaaac
     5761 caatttttct tttttgtaaa gctaaactaa aattttttga agaatcaaac caaagttcat
     5821 tatctacttc tatacgcccc aatttaggct ttataagtcc cgctatgatt tttaaaagag
     5881 tggtttttcc tgctccactt tcgccaaaaa gtgcagtaat ttttcctgat tctatatctt
     5941 ttttaaaatt taaatccagt cttcctttag cggtattcat aggatgattg atatcaattc
     6001 ttatcattga aaactcattt ttttattgat aaaataaaga ctaaaaagta ctaaaaaaga
     6061 aaaaataaac aatataaaag catattgatg ggctaagcta tagtttaaga tttcaagttc
     6121 atcataaata gctatactag ccactaaagt ttcaccttgt ttatgtcctc ctatcatcat
     6181 cacgactcca aattcaccca cagtatgggc aaaactcatc gcacaagcac taaaaattcc
     6241 tgctttagaa ttaggtaaaa tcactctaaa aagagtataa attttacttt tacctaaact
     6301 ataagaagca tcgagcaaat ttggattgat cgatgaaaag gcactttgca aaggatttac
     6361 cataaaaggc aaagaaaaaa tcaaagaagc aaaaacaaga ccttcaaaac taaaaaccaa
     6421 agaaagatta aaatattctt ttaaaacttg ccctaaaaaa ctattagccg aaaaagttac
     6481 aagcaaataa aatcccaaaa cactaggagg taaaatcaaa ggcaaggaaa taaagctttg
     6541 aaggattgtt ttaaaaggaa aacgcacaaa acttaacaaa taagctaaaa aaacaccgat
     6601 aaaaaaaagg ataaaagtcg tgataaaagc aagtttaaaa gtaagataaa gggtttgtaa
     6661 aaaagctgga tcaagcacta tgactcctta atacaatatc atttgctttt acaaaacaaa
     6721 gccattcttg attttcacaa atttcaagtt ctaaagcttt ttctttggtg ataatactag
     6781 aaagttcatt acctttaaaa tcaaaaaata cctgatataa aagtttgcct tttttaattt
     6841 ttgtaatttt agctaaaaaa gaattttcaa cacttaaaag agttttgctt gcgctaaaac
     6901 aaagctcatg ctctttaaaa agaagttcta cactcacacc aatttttaaa ttttctaaag
     6961 attttaattc aagcattaaa acactaaaaa tcacttcttt agaaagtatt ttaacaataa
     7021 ctatatcctc ttgatttaaa agctcacaaa tttgtccttt tataaggttc atggtgtgct
     7081 aaatccgtat tttttaaaaa tttcttttgc ttttgaagag ccaataaatt cgttaaattc
     7141 aaaggctaat tttttatcct tagcgtattt tgtgatgaca taactttgct ctaaagggct
     7201 aaaatacttt gcatcaatta taacagcctt acccttagga tgattgatag aagaaactaa
     7261 agaataagcc actatagcta tatctgaatt tttgctatct acatgtaaaa caggcactga
     7321 gatattttcg cctaaaacga ttttatcctt aagaagctca tttaaaccca aattttcaag
     7381 cacttcttta gctgctactc cataaggagc tactttagga ttggctatgc ttagatgcgt
     7441 gattttgttt gccttttctt ttaaattttc aacgcctcct tggagtaaat tttcatccaa
     7501 gctatacaaa gccaaaactc ccaaaacata aacttttggt tttattaaag catttttatc
     7561 atcataaata gccttagcat atttagtatc cgctgaaaaa aagagatcaa attctcttcc
     7621 ttgttttaaa agctcataat attttccaga agcaccaaaa accaattcta ttttatcttc
     7681 tggatgtgtt ttcaaaaact catctttaac ttcactcatc gcctttgaag ctgaagaagc
     7741 tacaaaaata cttaaatttt gcgcatttag atgtaaggta aaaaacaaaa tcccaaaaaa
     7801 tactataaac tttttcattt agctttcctt gtgtaaaaat ttaatttttg gattataaca
     7861 caaaaaaatc attttatatc atttttgcat aaaataaata caggatgata agtgagtttg
     7921 ttttgaaatt tttcttcaaa atcttttaaa aaacatttat ttaaaggata aaaacctaaa
     7981 gaatttaccc cgcttaattt taaatgtcta aaaacttcta aagcattatc aaagcttaat
     8041 tctacgagtt cttgagtgat ttttacctca ttaaaataga ctttaaaaat ttgttctaat
     8101 tcatttaagc taaaataatt taaaccaaac cccgtacttt gtttgatt
//
LOCUS       DAPIWU010000071         8090 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.071, whole genome shotgun sequence.
ACCESSION   DAPIWU010000071 DAPIWU010000000
VERSION     DAPIWU010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8090
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.071"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            38..1333
                     /locus_tag="RJ285_001296"
     CDS             38..1333
                     /locus_tag="RJ285_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7384061.1"
                     /translation="MRKSKFETKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGVFMGYLVDKFGLFKICIFFSLAFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNDNPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
     gene            1383..3014
                     /locus_tag="RJ285_001297"
     CDS             1383..3014
                     /locus_tag="RJ285_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HDV7384062.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLVLVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(3034..3456)
                     /gene="cgb"
                     /locus_tag="RJ285_001298"
     CDS             complement(3034..3456)
                     /gene="cgb"
                     /locus_tag="RJ285_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HDV7384063.1"
                     /translation="MTKEQIQIIKDCVPILQKNGVDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYINIEKKLYDK"
     gene            complement(3523..3981)
                     /locus_tag="RJ285_001299"
     CDS             complement(3523..3981)
                     /locus_tag="RJ285_001299"
                     /inference="COORDINATES: protein motif:HMM:NF014651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HDV7384064.1"
                     /translation="MVFKNNSKLQYTALKLLSSSNEDDKLIASDFTSLFLSDVDYVKA
                     PPFASFYLDENKEIYSDNSDKIKQIFVQNNFFSFFNKEPADSLINELLFISFLIKKQD
                     DIILQKFLKEEFFTWFNMWSFDVINKAKTHFYKALTMLMQDFFNQLNTKF"
     gene            complement(4078..4449)
                     /locus_tag="RJ285_001300"
     CDS             complement(4078..4449)
                     /locus_tag="RJ285_001300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384065.1"
                     /translation="MFIIVFFENSKHERKMSFFTGLIGIGLLNTAIVLQTLHVGQTWI
                     MGLVNPFELLGGTYDWFISLSFAFLGLGTVTWYLHNYLHEKFKSKFFAYFALLCAFLG
                     VFTTRMLFYGLISTQIMLGHS"
     gene            complement(4456..4782)
                     /locus_tag="RJ285_001301"
     CDS             complement(4456..4782)
                     /locus_tag="RJ285_001301"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384066.1"
                     /translation="MVAFIPSFFHLNDITHIFNVLNRMGVFYANNEWHIGWMNNEILF
                     VSLVCALGFLLYLKTSNWVFYLTLICGILGLFFMSGAYMAPCKKVCLLGILRSLCFIF
                     LLVLYF"
     gene            complement(4782..4946)
                     /locus_tag="RJ285_001302"
     CDS             complement(4782..4946)
                     /locus_tag="RJ285_001302"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384067.1"
                     /translation="MTSFNHILSEMPLVLFTILAQAVIGLSLVYAPAFINGYKNYANL
                     KSFGLALELQ"
     gene            complement(4933..5589)
                     /gene="dmsB"
                     /locus_tag="RJ285_001303"
     CDS             complement(4933..5589)
                     /gene="dmsB"
                     /locus_tag="RJ285_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HDV7384068.1"
                     /translation="MKLEENSQFGVMLDQSKCVGCRTCSLSCKDYKNMPVGVNFRRVF
                     ETEGGNWTCKEDGSFEQNVFAYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDS
                     MCIGCKACAMACPYGAPQFNHESGHMSKCDGCYERLKEGKNPICVDSCPFRALKAGDI
                     TKLREEHGNLASITPLPDASITHPNLCIVPEKHSLPSGNKSAIFHLPQNYQGVKNDII
                     "
     gene            complement(5600..7921)
                     /locus_tag="RJ285_001304"
                     /pseudo
     CDS             complement(5600..7921)
                     /locus_tag="RJ285_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009883064.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
BASE COUNT         2582 a         1229 c         1245 g         3034 t
ORIGIN      
        1 taaaaacaat gtttttaaaa tttaaggtaa ttaatcaatg agaaaatcaa aatttgaaac
       61 aaaggaaatt aagatcttag gactttcttc actaggagga actttagaat tttatgattt
      121 tattattttt gtcttttttg ctgaatatat agctaatgta ttttttccta aagatatgag
      181 tgaattttgg gctttattaa atacttatgg agcatttgca gctggatatt tagcacgtcc
      241 tttaggtggt atagttatgg cacattttgg agataaattt gggcgtaaaa atatgtttat
      301 gctaagtatt ttactaatgg ttcttcctac ctttgtctta gcttttattc caggttatga
      361 aactcttggg tttttagctc ctgttttatt gatacttata agaatttttc aaggcatagc
      421 tataggtgga gaattgcctg gagcttgggt ttttgtaaga gagtattgtc aagaaaaaca
      481 aaaagctttc tttttaagct gtttaaattc agctatggct ttaggaattt tgttaggaag
      541 tatagtattt ctaatcatta atgctttttt tagcatagaa gaaattgctg cttatgcatg
      601 gcgtattgct ttttttgtag gtggaatttt tgggattatt tctatttatt tgcgtagatt
      661 tttgcaagaa actcctgttt ttaaacaaat gaaaaaagaa tcatcgctta gttcttttcc
      721 acttaaagat ttatttaaag aaaaggatat tgtaaaaaat ttattttcat caatgatgat
      781 gacttgggtt ttaacaggtt gtgttattgt gcttgtttta ttaatgccta aatttatgcc
      841 cagtatttta aatttaagtg gagttgaagg aagttattta cagatattag gaattttggg
      901 aatagcttta ggcggggttt ttatgggtta tcttgtagat aaatttggtt tatttaaaat
      961 ttgcattttc ttttctttag cttttgtatt tttttctttt ttatattttt atgctttata
     1021 tgagcttaaa aatttggttt tggtgtgtat tttgtattcg attgtttgtt ttttaggtgg
     1081 aattaatgtg ttcgcaccta ttttaatgag tgaagttttt agagctaaaa taagattttc
     1141 aggaatttct ttttcttata atattgctta tgcaatttca ggcggtatta ctccgcaact
     1201 cgttttttgg cttaatacac ttgcgagtaa aaatgacaat ccatttttat atggtatgag
     1261 tatatatatg atttttttag cgttattggc tatttgtgct gtttttatag taaaagataa
     1321 aataaaattt tgataatcac tcttaaaatg ttataattaa aattatattt tggagtttat
     1381 aaatgccttt tattatggaa ttacttaagc aaaataaatt aaagttgatt tcttttttgc
     1441 ttttttcttt tattacaagc gctgttggag ttttaactct tgtttttatc aatgattatt
     1501 tgcttaaaaa tgcacaaaac attcctattt tttattttat tgttttgctt ttgatttttt
     1561 ttataagttc taccatagtt gaacttggac ttagtatttt tggacaaaat tttattttta
     1621 aaatgcaaag gcgcgtagta aagcagatct tagacacccc tttgttaaga gtcgctaaag
     1681 taggtaaggc tagaatttta gcttctttgg gaagtgatgt gagaaatata tcttttgggc
     1741 ttttaagatt gcctgatttt ttacaatcaa gtatattgat tttatgcact agtgtttatt
     1801 tatgttatct ttcaccacaa atttttgctt tgtgtgtggt atggattatg gttattttta
     1861 ttactaataa ttttttgatg atgaaagtat atcagtattt tagaaaggca agggaaaatg
     1921 atgatgcttt gcaaaataat taccaaaata tactagatgg acataaagaa cttttgatca
     1981 atcgtgatag agctaagctt tattatgaag atgaatttga aaataatgca agattgaaaa
     2041 agaaaaatag tactttaggt aatcttttta acaatctctc aaacaactgg acaaatgtaa
     2101 ctcttttggt tttagtgggt gtagagtttt acttagcttt aaaatttgaa tgggcaagtg
     2161 ttgcagatgc tacaactata gctctttcta ttttgttttt acgaacccct ttagtatcta
     2221 tgataggatc ttttcctact ttgcttttgg caaaaatcgc tttggataag atcgcaaaat
     2281 tggaattaga tgattatata gaaggtttta aaaaaacaca ttatatcagt gaatggaaaa
     2341 aaatttcttt tagaaatact caatttgctt atgaagaaaa ttttcattta aatcctgtaa
     2401 atatagaact taaaaaaggt gaattggtat ttttaatagg taaaaatgga agtggtaaat
     2461 ccactttttg tatgcttttg acaggacttt ttaagccaag caaaggcgga atttatgttg
     2521 atgatacgct tatagatgat aaaaatttag atgagtatag atctcttatt tctgctgttt
     2581 ttagcgattt tcatcttttt actaaaacct taaataaaga aaattttgca agcgaagaaa
     2641 aaattgcttt ttggttggag tttttagaac ttaaagataa aacaagtgtc aaagataatg
     2701 aactgacctt aaccaaactt tctacagggc aaaaaaagcg tttagctatg cttatagcct
     2761 tgcttgaaga aagggatatt ttagtgcttg atgaatgggc ggctgatcaa gatcctgttt
     2821 ttagaagatt tttttataaa aaacttttac ctttgctaaa agagcaaggt aaaacaatct
     2881 ttgctatcac acatgatgat gcatattttg atagtgctga tagaattttc ttggctcaaa
     2941 atggtgaaat cagcgaatta aagggtgaga atataaagga attagctaaa aatttagtag
     3001 aaaaatttga ttaaagccca aaatgggctt atattattta tcatagagct ttttttctat
     3061 attgatataa aattcagcaa tttttccata agcaacttcc caagctttaa gagtagcttc
     3121 gtcaggattt aaaagatttt taatagcttt taaaaggcaa gctccaacta taggataatg
     3181 ctcttcttta acccctaaat taacatgagt tatggcaact ttatcaacaa agtttctcat
     3241 attttctaaa ttttctatat ttttagctgc cattaaaatc gccatcgcta aagcttttgg
     3301 ttgttctcct gaaatttgtt tttccatatt aaacataggt tttacctcag gataatcatt
     3361 aaacattatt ttataaaact cattggttaa atctactcca tttttttgca aaataggcac
     3421 acaatctttg atgatttgta tttgttcttt tgtcataatt tctccttttt aatgtaaaag
     3481 agatattata tatcttaaaa aggagaaaaa aattgacttg tgttaaaatt ttgtatttag
     3541 ttgattgaaa aagtcttgca ttaacattgt taatgcttta taaaaatgtg ttttagcttt
     3601 attgataaca tcaaaactcc acatgttaaa ccaagtaaaa aattcttctt ttaagaattt
     3661 ttgcaaaatt atatcatctt gttttttgat taaaaaacta ataaataata attcatttat
     3721 caagctatct gcaggttctt tattaaaaaa agaaaaaaag ttattttgca caaaaatttg
     3781 cttaatttta tcagaattat ctgaataaat ttctttattt tcatcaagat aaaaagaagc
     3841 aaaaggcggt gcttttacat aatcaacatc gcttaaaaac aaagatgtaa aatcacttgc
     3901 tattaattta tcatcttcgt ttgaagatga taaaagcttt aaagcggtgt attgcaattt
     3961 gctattattt ttaaaaacca attttgccag aattcttctt ttttaagttt ttctagcaaa
     4021 aaatgattag gtggattttg caaaaattga taaatatatc tattgccaat ttttgcatta
     4081 agaatgtccc aacatgattt gagtacttat aagtccataa aatagcattc tggtggtaaa
     4141 tacccctaaa aatgcacaaa gtagggcaaa ataagcaaaa aatttacttt taaatttttc
     4201 atgtaaataa ttatgcaaat accaagtaac agtcccaagt cctaagaatg caaaagaaag
     4261 cgatataaac caatcatagg ttccacctaa aagttcaaaa gggtttacaa gccccataat
     4321 ccaagtttgt cctacatgta gggtttgcaa aactatagca gtgtttaaaa gccctatacc
     4381 tataagtcct gtaaaaaacg acatttttct ttcatgtttg ctattttcaa aaaaaacaat
     4441 aataaacaat agcgcctaaa aatatagcac tagcaaaaaa ataaagcaaa gtgatcttaa
     4501 aatcccaagt aggcacactt tcttgcatgg agccatataa gctccactca taaagaaaag
     4561 tcctaaaatt ccacatatta gcgtaagata aaacacccaa tttgaagttt ttagataaag
     4621 caaaaagccc aaagcacaca caagagatac aaataaaatt tcattattca tccagcctat
     4681 gtgccactca ttgtttgcat aaaaaacacc cattctattt aatacattaa aaatgtgtgt
     4741 aatatcattt aaatgaaaaa atgaagggat aaaagcaacc atcattgcaa ttctaaggct
     4801 aatccaaaag actttaaatt tgcataattt ttgtaaccat ttataaatgc aggtgcataa
     4861 accaaactaa gtccaattac agcttgtgct aaaatagtaa ataacaccaa aggcatttcg
     4921 cttaaaatgt gattaaatga tgtcattttt aactccttgg tagttttgag gtagatgaaa
     4981 aatcgcactt ttattacctg aaggcaaact atgtttttca ggcactatac ataaattcgg
     5041 atgcgtgata gaagcatcag gtaaaggtgt gatagaggct aaatttccat gttcttctct
     5101 cagttttgtt atatcgcctg cttttaatgc tctaaaagga caagagtcca cgcaaattgg
     5161 atttttacct tcttttaatc tctcataaca cccatcgcat ttgctcatat gaccactttc
     5221 atggttaaat tgaggtgcgc cataaggaca tgccatagca caagctttgc agcctataca
     5281 catactatca tcgattgcta ctattcccca ttttattttc attgttgcac cagttggaca
     5341 agctttaaga caagatggat tagaacaatg attgcaagaa atagaagtgt agtaagcaaa
     5401 aacattttgc tcaaaacttc catcttcttt acaggtccaa tttccccctt cagtctcaaa
     5461 cacacggcga aaattaactc ccacaggcat gtttttataa tccttgcaag aaagtgagca
     5521 agtcctacag cctacgcatt tgctttgatc tagcataaca ccaaattgtg aattttcttc
     5581 taatttcatc tttttctcct taaacttttg caatttcaac taaaatagaa tgttgtccat
     5641 ttcctttaga aatagcagtt ggtactatac ttgccaaaga attcacacaa gttcccacat
     5701 cgataccatt ttcatatttt gcccatgcac cttgtggggt tactgcacaa cctggtatga
     5761 tttttggagt aatttttgct atgccttgta tgattcctaa gtcatttctt acttgcacca
     5821 catcgcccgt tttgatactt ctttgctctg catctatggt atttatccaa atttcttgtg
     5881 gattagcttc tctaatttgt ggaatttccc aaaagctaga atgcgttcta cctttgtagt
     5941 gatagccaaa aaattgcaaa ggatactttt gttttaatgg atctaaaatc ccttctcttt
     6001 ggctttcaaa aacaggaata ggtactattt gttgtccttc ttttaatttc caagtttttt
     6061 gcatttgtgc gagttttgtg ctataaattt ctatctttcc gctaggagtt tttaaaggat
     6121 tattgatagg atcttttata aaactttgta atgccactac aggttttaca ggctcaaatt
     6181 ttacaagtcc tttttcgcac atttcttcaa aactaggcaa aagtggattt tttttcatac
     6241 tttcttcata aaggtatttt agccaatctt tttgtgttct tccttcgcta aattcttttt
     6301 ctatgccaag tcttttagca agttcaagac acattttata aataggtttt gcttcaccaa
     6361 ctggctcgat agctttttga caataaataa tataaggctt attgctataa tatcctgcgc
     6421 taggtcttat aaaatcttct tgctctagca tagttgcatc aggtaagata taatctgcgt
     6481 agttatttga cggagttcta gttacattaa catctattat acactcacac aaattctcat
     6541 cgcttaaaat atcatgcact tctttaattg tgctgtgctg atttgtaaga caatttcctg
     6601 ctgtattgaa aataaattaa tattttgttt taattgtgtt gtgccacgca ccccatcgct
     6661 aatatctgtc atttcttttc cacgataaat agcatctgtg aataaaaaac aaggaataga
     6721 atcttttatt ggatttttaa aaggcatacc tattatatca tatgttttac ttgaccctgt
     6781 tcgacatcct gtatttgtgc cttctatgcc aatatttcct gtaatacaag ctagagttgc
     6841 tatcgccctt gcattttgtt ctccatttga atgtctttgc actccccaac cttgttctat
     6901 aaaacaaggc tttatggtgg caatttctct tgcaagttga actatgcggc gtgctggatt
     6961 tttgtaatct tgctagccca atcaggagtt ttttctactc catcgtttag tcctaaacat
     7021 agctttcata gcttgagttt ttggctgcat cttgtggcag agtattttcg ctaaagccta
     7081 tggtgtattt atcaagaaaa gttctatcaa gtaaatcttc ttttatcatc acataagtta
     7141 gcgcagcaat taaagctgca tcggttcctg gtgctatagg tatccactca ttgcaatgcc
     7201 ctatcataga atcattgtat cttgggtcaa tgtgaattat tttacatcca ctttcttcta
     7261 aggctttttg ataagcatag cctactccac cacctcccat tctagtttca acatgatttg
     7321 ctctaaaaaa tatagctaat tttgcagagt gtaaagtgta tatatcgcta gcaggagatc
     7381 caccatagaa aaaattcata gcatttgaaa tttgagccgt agaataagaa ttatgataat
     7441 ttaaataacc accataaaga cttaaaagtc tagcccatgg accttgtgta cagcgattga
     7501 ttattgttcc tgttgttcct gttgcataat ttatataaaa ggcttcattg ccgtattttt
     7561 ctttaatttc ttgcattttg gcagaaattt catcaaaagc ttgttcccaa gaaataggca
     7621 taaatttacc ttcgcctctt tttcccactc tttttaatgg tctttttaag cgatttgcat
     7681 tgtaaacttt atatcttgaa ctacgccctc taatacaggc tcttgcttga cgattatcaa
     7741 agctatcatc accttcatga tcagtactaa catatttaat aattccatct tgagtatgca
     7801 cttttacagg acattttgtt tcgcaattta cattacatcc agcccatttg ctgatcaatg
     7861 gtggagtttt taataaattt gcacttagac ttataggact taaggttaag ccgccaaaca
     7921 aagaactcca ttttaaaaaa tctctacgat tttgttccgt gttatctcct tacatttatg
     7981 tgacaaaaag taattgcgat tatagtacaa ataataattt tattcaatta aaattaagac
     8041 tttaaaactc ctaaatatag gctttataat gaatttttcg tttatgaatt
//
LOCUS       DAPIWU010000072         8027 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.072, whole genome shotgun sequence.
ACCESSION   DAPIWU010000072 DAPIWU010000000
VERSION     DAPIWU010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8027
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.072"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            54..468
                     /locus_tag="RJ285_001305"
                     /pseudo
     CDS             54..468
                     /locus_tag="RJ285_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853469.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            464..1273
                     /locus_tag="RJ285_001306"
     CDS             464..1273
                     /locus_tag="RJ285_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7384069.1"
                     /translation="MSFNITSNLVGITLGLILAESISNYFGNWRDSLSFYAWINLILL
                     ILWLFVGKDENKKEEKKNNAKDLIYALKSRVTWGMIIFYIEPILFLNSLFAFLPTFYA
                     QYAGFSKELADFAKKEIPALANFAIIFGPYLGLFFKRKNISFKIMLLSGGACIFICGF
                     CMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLPSELKNSNPNQTAYIMSAFWSITFVI
                     LSFNLWVVSWSVDKTHSFTLGFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            1275..2426
                     /locus_tag="RJ285_001307"
     CDS             1275..2426
                     /locus_tag="RJ285_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7384070.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGNDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNYRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2430..3170)
                     /gene="yaaA"
                     /locus_tag="RJ285_001308"
     CDS             complement(2430..3170)
                     /gene="yaaA"
                     /locus_tag="RJ285_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDV7384071.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKNLQELFGIKNENEIDKFKHDLKQAPTQEAIMLYTGVSYEYLNFKILDKKSQ
                     AYILENILIFSNLFGVVRANDTLPFYKFKQGAKIGNFTIEKFYKEHFSKALDEYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIALEILD"
     gene            complement(3262..4380)
                     /locus_tag="RJ285_001309"
     CDS             complement(3262..4380)
                     /locus_tag="RJ285_001309"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA-like lipoprotein"
                     /protein_id="HDV7384072.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKISSFI
                     NKLSSDSYTLSFDNSINKQENNYIDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNIANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     ITTAKENLQTLKTQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLNINNQDATEALKIILPFIMFSMLMGGASF"
     gene            4600..5439
                     /locus_tag="RJ285_001310"
     CDS             4600..5439
                     /locus_tag="RJ285_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7384073.1"
                     /translation="MKKILLSVLTAFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            5480..6727
                     /locus_tag="RJ285_001311"
     CDS             5480..6727
                     /locus_tag="RJ285_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7384074.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFTKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICFIFSIAFIIFGVLFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIIF"
     gene            complement(6710..7978)
                     /locus_tag="RJ285_001312"
     CDS             complement(6710..7978)
                     /locus_tag="RJ285_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HDV7384075.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVYFKNEVKSNDWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRA
                     YDENLGIVQTSINLATLRMQDKQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNVKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
BASE COUNT         2469 a         1041 c         1355 g         3162 t
ORIGIN      
        1 atatcttatt tttttatgtt atattttaat aaatatctaa aaaggatttt gatatgggaa
       61 aatcactttt atttcatttt agacgcattg gagttgaatt tatctttttt agtgtttatg
      121 ctgtttttag tatctcttgg gcagcaacag ggtctttaat gcctttgatt tcaaatgatc
      181 ttgccctaaa tactcagcaa gctactttaa tcactagtat gatagtagtt gcgaaaattt
      241 ttggtgcttc atttactgct tttttggttt ataaattcgg attaaaaaag ggatattttt
      301 taggctgtat tttaatgagt tcgggtatct ttttaagttt tgtagatagt tatagtggta
      361 ttttgattat aagattttta acagggcttg gttcagcttg tgctttagtt tgcttagtgc
      421 ctattgcaca gcaatggttt gaaaaaaagc tttgcatttt gtaattagtt ttaatataac
      481 ttcaaattta gtaggcatta ctctaggact tattttagct gaaagcatct caaattattt
      541 tggaaattgg agagattctt tatcatttta tgcttggatt aatttgattt tattgatttt
      601 gtggcttttt gtaggtaaag atgagaataa aaaagaagaa aaaaagaata atgcaaaaga
      661 tcttatttat gctttaaaat ctcgtgttac ttggggtatg attatttttt acatagagcc
      721 tattttattt ttaaattctc tttttgcttt tttaccaact ttttatgcac aatatgcggg
      781 ttttagtaaa gaattagctg attttgctaa aaaagaaatt ccagccttgg ctaattttgc
      841 tattattttt ggtccttatc ttggattatt ttttaaaaga aaaaatattt cttttaaaat
      901 aatgctattg tctggaggag cgtgtatttt tatatgcgga ttttgtatgt tatttttaca
      961 aaatttagta ttgatacaga tttttgctgt gttatcaggc attttttatt ctatgtggtt
     1021 tccatttttc tttaatctac cttcagaact aaaaaattcc aatccaaatc aaactgctta
     1081 tattatgagt gctttttgga gtattacctt tgttatacta tcatttaacc tatgggtagt
     1141 atcttggagt gttgataaaa cccatagttt tactttgggt tttgtttata tttttgcttt
     1201 gatttttatt tcagcgatct tagcacaatt tgttttacct agaagagaaa attttataca
     1261 aggagaaaaa tagaatgaat ttaattccag aaatactaga cttacaaggc gaatttgaaa
     1321 aaattcgtca tcaaattcat gaaaatcctg agcttggttt tgatgaatta tgtactgcaa
     1381 aattagtggc gcaaaaatta aaagaatttg gttatgaggt ttatgaggaa ataggaaaaa
     1441 caggcgttgt gggggtttta aaaaagggga atagcgataa aaaaatagga cttcgtgcag
     1501 atatggatgc tttgcctttg caagaatgca caaatttgcc ttataaaagc aaaaaagaaa
     1561 atgtaatgca tgcttgcggt catgatggac atactacttc tttattgctt gctgcaaagt
     1621 atttagcaag tcagaatttt aatggtactc taaatcttta ttttcaacct gctgaagagg
     1681 gcttgggtgg tgctaaggca atgatagaag atggattgtt tgaaaaattt gatagtgatt
     1741 atgtttttgg atggcacaat atgccttttg gtaacgataa gaaattttat cttaaaaaag
     1801 gtgcgatgat ggcttcttcg gatagttata gcattgaagt tattggaaga ggtggtcatg
     1861 gaagtgctcc agaaaaagca aaagatccta tttatgctgc ttctttgctt gtggtggctt
     1921 tgcaaagtat agtatctcgc aatgttgatc ctcaaaattc agcagttgta agcataggag
     1981 cttttaatgc aggacatgct tttaatatca ttccagatat tgcaacgatt aaaatgagtg
     2041 ttagagcatt agataatgaa actagaaagc taactgaaga aaaaatttat aaaatttgta
     2101 aaggtcttgc acaggctaat gatatagaga ttaaaatcaa taaaaatgtt gttgcaccag
     2161 tgactatgaa taacgatgaa gctgtggatt ttgctagtga ggttgcaaaa gaattatttg
     2221 gcgaaaaaaa ttgtgaattt aattatcgtc ctttaatggc aagtgaggat tttgggtttt
     2281 tttgcgaaat gaaaaaatgt gcctatgctt ttttagaaaa tgaaaacgac atttatttac
     2341 ataattctag ttatgttttt aatgataaac ttttagctag ggctgcaagt tattatgcga
     2401 agctagcttt aaaatactta aaataaaaac taatctagaa tttcaagcgc aatttcttcc
     2461 tttaaacctt tgatttgaat ttctttgagt tttagatttg aaggaaggtt tgctaaaagc
     2521 tctttattgt tttttacttg gttttttgca cttatggaga gtaaaattcc cctgtaagct
     2581 ttagcaaaat gactgatgac tttaccattt tttacaaatt tataggtata aaatttcttt
     2641 tttggggtat agaatttatc ataaaatcct gctctaagat caagtatttc ttcattttcc
     2701 aagtattcat ctaaggcttt actaaaatgt tctttataaa atttctctat ggtaaaattt
     2761 cctattttag ccccttgctt gaatttataa aagggtaggg tatcattagc tcttacaacg
     2821 ccaaaaagat tagaaaatat aagaatattt tctaaaatat aagcttgact ttttttatct
     2881 aggattttaa aattaagata ttcataactt accccagtgt aaagcattat agcttcttga
     2941 gtgggagctt gttttaagtc gtgtttaaat ttatcaattt cattttcgtt tttaatgcca
     3001 aaaagttctt gtaaattttt taaacttgca tttttgataa attctccata atgctttaaa
     3061 gcttccattc tataaggaaa taattcttta aatataaatg agttttcatc gatgggattt
     3121 tttgtacaat tttcattttt gctttcacta ggggagaata aaattttcat tttagccttt
     3181 tttgttaatg ttatgaaaac attaagagca aagaatttaa tcttgctttt aatgtttttg
     3241 aagtttttat cattttaaaa tttaaaatga cgctccgccc attaacatag aaaacatgat
     3301 aaatggaagt ataattttta acgcttctgt ggcatcttga ttgttgatgt tcagtttttc
     3361 tatactgtcg attccctgtg tgctatagtc actaacaggg atgtttttaa attttaaatc
     3421 aagattgagt ttataatcat cgttttgagt gatattgttt aaaatagcta aagctttatc
     3481 aaagattaat gcttgttctt cattttgact ttgagttttt aaggtttgta aattttcctt
     3541 agcagttgtt atatagctac taaatacgcc ttcggtttta agagttgaat caattttaaa
     3601 attgtttaag atgatgtatt tttggattgt attgctaaaa tctgaagctt gttcgtagtt
     3661 tgctatatta agaagttcat tgatagcttg ttcatccata gctaaagttt gagtgttaaa
     3721 ttttataccc ttagaatcaa ggtaattaag caaatcttct tttagattta tatttaaatt
     3781 tgtattgaaa tttaattttg cgttataaaa ttttatatca agattatcta tataattgtt
     3841 ttcctgtttg ttgatggagt tgtcaaatga taaagtataa gaatctgagc ttaatttatt
     3901 gataaaagag ctgatttttg gatcttgttg aaataagctt gcattgatgt cgctaacaac
     3961 tttttctcca agtttaaaat cttcaaaaac caaatttgat tgtatgcttt tttggttttt
     4021 aaaaagatcg ttgtaatatt ctttaatgct aattgatgta tttgcttcgc ctttgtaaat
     4081 ttcatttgag cgaattttga tattttttgc ttgaaatagt tcttgatact catcgttatt
     4141 atcttttgca agagttttga aatttggact taaacacgct ataaaatcac catctgcatt
     4201 gcatttaaaa tcagaaaatt caatttttat tccagaatcc tgagaaaggc ttgcaatttc
     4261 ttgtttaact gtttgattta gttgattttc atatttttta actgtttttt catctatgga
     4321 atttccgcaa gctgaaaaca aaacagctat tccaatagag agaaaaatac cttttttcat
     4381 agttttctcc ttaaaaattt aaaaaaagat tatatctttt ttttacttaa aatttaaaca
     4441 atgctaaaag agagtgtgag attaattaca tttttacaca taggaaaatc tttttagttt
     4501 gtttcaaatg cattatttat aattttaagt ataattaact ttgcaattat tatatatttt
     4561 tgcaatagct taaagcttat ttttaaagaa aggaaatgta tgaaaaaaat acttctaagt
     4621 gttttaacgg cctttgttgc agtagtattg gctgcttgtg gaggaaattc tgactctaaa
     4681 actttaaatt ctcttgataa gatcaagcaa aatggagttg ttaggattgg ggtatttggc
     4741 gataaaccac cttttggtta tgtggatgaa aaaggcaaca atcaaggcta tgatatagct
     4801 ttagctaaac gcatagcaaa agaacttttt ggcgatgaaa ataaggtgca atttgttctt
     4861 gttgaagctg caaatagggt tgagttttta aaatcaaata aagtagatat tattttggct
     4921 aattttactc aaactccgca aagggcagag caggttgatt tttgcttgcc ttatatgaaa
     4981 gtagctttag gcgtagctgt accaaaggat agtaatataa ctagcgtaga agatttaaaa
     5041 gataaaacct tgcttttaaa caaaggcaca acagcagatg cttattttac gcaaaattat
     5101 cctaatatta aaactttaaa atatgatcaa aataccgaaa cctttgccgc tttgatggat
     5161 aaaagaggcg atgctttaag tcatgataat accttgcttt ttgcttgggt gaaagatcat
     5221 cctgatttta aaatgggtat caaagagtta ggtaacaaag atgttatcgc accagcggtt
     5281 aaaaaaggcg ataaagaact taaagaattt atcgataatt tgatcattaa actaggccaa
     5341 gagcagtttt ttcacaaggc ttatgatgaa actttaaaag ctcattttgg agatgatgtt
     5401 aaggccgatg atgtagtgat tgaaggtgga aaaatttaat aaagggcttt ttgcccttta
     5461 tattgattta ggataaaata tgcaaaaaaa atacaaaaat attatttatg cttctttggg
     5521 tggaatttta gaattttatg attttgtgct ttttgccttt tttttggata tttttactaa
     5581 ggtattcttt ccgcaaaatg atgctttttg gatgcagata aatgcttata tagcctttgg
     5641 tgctgcttat ttagcgcgtc cttttggttc tattgtgatg gcacattttg ctgatagata
     5701 tggaagaaag aatatttttt atatttctat gcttttgatg gttttgccta gttttgcttt
     5761 agcttttttg ccaagttatg aaagtatagg tatatttgct actttgattt tatttactat
     5821 acgcattttg caaggtttag ccgttggaac tgaggtgagc ggagcttgga tttatgtgag
     5881 cgaatttgtc aaagggcgtc aaattccttt ggctcttggt tttatttcag cgactttaac
     5941 cataggttta ttgctaggaa atattgccac tttaggcata agatcttatt ttaccccaga
     6001 agaagttcaa agctatgctt ggagaattcc ttttatcata ggaggatttt ttggaatttt
     6061 agctttgttt ttaagaaata aactcagcga aactccagaa tttataaaag ttcaaaatga
     6121 aaagaaaatt ttaagttttc cattgttcga agctttaaaa actcataaaa tgagtatgct
     6181 tgtttgtttt ttaatgacca tggttttaac aagcggtgtg gcaactttga tgattttacc
     6241 taagtatttt gaaagtcttt tagctatgag taaaacttct gctttatggg tgcaaaattt
     6301 tgctatttta gcggtgattt ttggagcttt atttcaaggt tttttagcaa gcaaatgggg
     6361 aagctatagg atttgtttta tttttagtat agcttttatt atttttggtg tgctttttag
     6421 tttttatgat gagaattttt tattttattt tttactggct tgttttgcac aaggtattat
     6481 tactttcgca cctgttttta tgacgcaaat ttttaaaagt gaactaaaat ttagcgggct
     6541 tagttttgct tataatattt cttatgcgat tttaggtttt ttaacccctt ttatagttaa
     6601 tgctttttat aaagagtatt tgggtattta tcttgctata gtgggatctt gttccttgct
     6661 ttgcgtgttt ttgttaaaac gcgtttttgc aagaagcaag attaaagaat taagcattat
     6721 cttttaaaac ttcaaaaaca accttagata ttttttcaac tgaagcgatt tcacaatgct
     6781 catcagttga atgaggatta tggatatttg ggcctataga agcgcataaa agctcttgtt
     6841 ttttctctat aatgccacac tcaagccctg catggatagc tgaaactttg acattaggcg
     6901 atactttttt aagtgcttta aaaaccatgt cgctaagtgc gtttggttta ccttcccaag
     6961 gtggatagaa attaaaactt cttactttaa aatcaaaagc cttgaaaaat tctaaagttt
     7021 caaattctac ttgcttaagt ccatcaagta tattagatct tgcaaaaagt gcgaatttga
     7081 tttgtttatc ttgcattctt aaagtagcta ggttaatgct tgtttgaact atacctagat
     7141 tttcatcata agctctaact ccatgagtaa aagaatttat aaggcttaaa agttttttac
     7201 tttgatcgca aatttcaaat tcattttctt ctttaaattc gcattttatc cagtcgttgc
     7261 tctttacttc atttttaaaa tacactaaag ctttggcgtg tttaggtata gaattgattc
     7321 tttctccgcc ttcaaaagaa atgatttctc cttcattttc ttgtatgaat ttagccattt
     7381 ctttgatgga acttttttca ttgcgtatga tatttatgcc tgagtgtcca cctttaaaat
     7441 tttgcgcaca aagctcataa attttaccct tttttctaag ggtattaaaa gacaaacttg
     7501 cttctatatc tactccacct gcacagccta tcatgatctc atcatcgctt tcatgatcta
     7561 aatttaaaag cattttagat tctaaagtgt gctcgagtga attcactccc atgagtccta
     7621 cttcttcatc gtttgtaaaa agacattcta aattttcaaa ttcagccata gcactcatca
     7681 tgatggctat acctatgcca ttatctgcac caagacttga atttttggct cttaaaaagc
     7741 cattttcttc ataaacttct aagtttggtg catcgcccat acagaccata tcataatggc
     7801 tttgtagaca aatttttggt ttgcctttta tggcatgaat atttcctgct ttatctacac
     7861 tcactttaaa gcctttatct ttagcataag agcttaaaaa ttctttcatt tgttctgttt
     7921 cataactgca atgaggaatt ttgcataatt gtttaaaatt ttctataaca ttttgcattt
     7981 tatctccttt gttttgataa aattatggca tattttttaa aatttaa
//
LOCUS       DAPIWU010000073         7930 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.073, whole genome shotgun sequence.
ACCESSION   DAPIWU010000073 DAPIWU010000000
VERSION     DAPIWU010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7930
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.073"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            38..1414
                     /locus_tag="RJ285_001313"
     CDS             38..1414
                     /locus_tag="RJ285_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDV7384076.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVVACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKILRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            1477..2079
                     /locus_tag="RJ285_001314"
     CDS             1477..2079
                     /locus_tag="RJ285_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384077.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDVINTEEYKLKRELEVEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFKCLSAFLETQSEKNDLAVVKM
                     ISESMERKIQRFYLQTKFQTFPQYIFPSVWSSPMWDKQWE"
     gene            2070..2276
                     /locus_tag="RJ285_001315"
     CDS             2070..2276
                     /locus_tag="RJ285_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384078.1"
                     /translation="MGIILRILSLIAGFVTIVLMCGLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            2355..3082
                     /locus_tag="RJ285_001316"
                     /pseudo
     CDS             2355..3082
                     /locus_tag="RJ285_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000323697.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
     gene            3101..4567
                     /locus_tag="RJ285_001317"
     CDS             3101..4567
                     /locus_tag="RJ285_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384079.1"
                     /translation="MENICQFIIENIDKNSLNTKKIKLVFNMQEQEITTISKIFKVSS
                     EHIIAFYDTSTSFNYFSKTTGICFTGKEVIFKRKEDEVLMKINYEDFKEANKSLPEKT
                     TTLQDIKFPISFHNLGTSYLSFDDFKKKNYIEENDELIINFLHILTSKNNIESFKNES
                     MFPQALEKTNESIKENYIKVIIKIILDQYGFLDEKRSIKIFALMNKINVASETRYKIQ
                     DFLHNKHSSFEDLLNIIKQESRFMQFKYILISLIKDLIDIDFEDNKIYNFLYENKDIF
                     KIKDLKEIYWIKEIIKKEYQIILDDNKEIQQIFNFISETATKNNISLNGLYLSGMTIG
                     MSVSIMELLGFGELIKLPLIDSSKKYHNKNKQQLRLFIIQEILKENQKTITQIIDIIN
                     NLIEQCNTNTQNLQELIKLLKLASKNNETFKEREKLLYCPETLSLITINNHLKEDDIQ
                     FIEQYYTYNQNTHEYERNDNLSSSDLEKLSNFFKLKNL"
     gene            4893..6050
                     /locus_tag="RJ285_001318"
     CDS             4893..6050
                     /locus_tag="RJ285_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384080.1"
                     /translation="MITYSNLSDVKKRIEDEFTHRNAECDKYDYLIAITCGAIAGIMD
                     IFLVGNPKDSYLGKKVDKTVEKMTQKFAQLCGWDKQKALDKNKDLTKSAIAFLENKFK
                     INYDQTTTNGRNGTNGKVDNLSMKNHHLKSIGHSPDIFGLFVSIVNQFTNTSTFVSNG
                     KIITIDTNTFELQGGNFIAKIFCGFFNWFGHLASDWCGSSGGKERGAGIPMPFYNLFL
                     LCDFGNFGQHRQTLAQIATQVFEQGYDLRHGVTMSIPVMINEMLIRFMYIIKAKFYHK
                     KEWKECIPKDDIPELNKMLLIGSGTFLLIDTGGAWIKSKNPITNPVVFLSEINLINVI
                     RFSTLILKEIYILYNNGKIDNKKLEKYLDDTCKILLIEAHNKSKPFKEILK"
     gene            6059..7127
                     /locus_tag="RJ285_001319"
                     /pseudo
     CDS             6059..7127
                     /locus_tag="RJ285_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            7124..>7930
                     /locus_tag="RJ285_001320"
     CDS             7124..>7930
                     /locus_tag="RJ285_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HDV7384081.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALEKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLHTKNENFIPDEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNCQIIDEDETSYTLSTQVSYEDEILHLVKQWIPYIKILA"
BASE COUNT         3168 a         1022 c         1227 g         2513 t
ORIGIN      
        1 aatttttaga attaatttat acttataagg aaatttagtg cagcaagagt attatgactt
       61 ggatttagaa cgagctattt taagcagttg tatcatgagt gaagaagctt atgctagtat
      121 agcaggtgat attagcccaa aagattttag tcttaaagct caccaagata tttttaaagc
      181 ggttgtagct tgtagtaata acaaagagcc catttctgta agttttttaa gaaaacataa
      241 aaaaatagat gagcaaattt tagcagaaat tcttgccact ccttctatga tagatttgcc
      301 tgcttatgta aatgaacttc acgaaaagtc cgtaaaaaga caactcttga gttttgcaca
      361 tcttttgcca actcgtatca atgaagatcg tgctgtaagt gaaatcgcag atgaaattgg
      421 taaagaaatt tttagcatta caaatcgtgt gaattctaga gatattaaag atgttgatat
      481 ggtaatatca gaactttttg aagaatttaa aaagcaaaaa actttagaaa ataaaggtat
      541 tatagggctt gatacaggtt ttgaaggtct aaataaaatg acaaaaggtt ttaaaggggg
      601 tgaacttata ataatcgctg cgcgcccagg tatgggaaag acaactcttt gtttaaattt
      661 cattgacaag attttaagac aaaaaaaagg cgtggctttg ttttctcttg aaatgcctgc
      721 aactcaaatc atgcaaagaa tgctatcttc caaaacttcc attcctttgc aaaaaatttt
      781 aactgcagat ttaaatgatg atgaatggga gcgtttagga gatgcttgta atgattatag
      841 tcaaaagaaa ttatatattt acgatagtgg ttatgcaact attgctgatg taagggctat
      901 tttaaggcgt ttaaaatctc aagatgaaag tataggactt tgtgtgattg actatatagg
      961 gcttatgatg agtaattcaa attttaatga tagacatttg caagttagtg aaatttcaag
     1021 aggacttaag cttttggcta gggagcttga tatgcctatt atcgcacttt cacaacttaa
     1081 tcgtggctta gagcaaaggg caaataagcg tcctttgatg agtgatttgc gagaaagtgg
     1141 agctatagag caagatgcgg atgctatttt gtttgtatat cgcgatgagg tttatagaga
     1201 acaagaagaa aaagaaagag agaataaagc taaagctgaa ggcaaagctt atcaaaggct
     1261 ttttatacca aatcctatgc aagaaaatgc tgaaattatt gttggaaaaa atagaaatgg
     1321 acctgttgga actatagaag ttgtattttt aaaagaaaaa tcttgttttg tagataaacc
     1381 tataggctat gaaactactg aatttacagg ctagctttaa taaaataagt ttttaatatt
     1441 ttaaagttat tttttacgac acaacctgtc gcaagggtgt tttatacttt ctttgttatt
     1501 ttaaaacaag gagagaaaat gttaaaacaa atcgcatttg gtagtatagc tcttacagct
     1561 acaggatatg gcataaaaaa attatacgaa aaattatcca agccagaaag aaaatttgat
     1621 acacatgcta ttgttccaag ctgtaaggat gtaatcaaca ccgaagaata taaactcaaa
     1681 agagagcttg aagtcgaaca aaagaaaaat caaattcaag aatttctttg tgaatgcatg
     1741 gagtgttata gcggcttttc aaaatatttt aattctaagg aatttttaga atttgagcaa
     1801 aattttacct ctaaaaataa tcacaaaaca gaatttcttt tgtcgtctta taaagatcaa
     1861 atgataaaag tgatcgacta tgctaaaaaa tttaaatgct tgagtgcttt tttggaaaca
     1921 caaagcgaaa aaaatgactt agcggttgta aaaatgataa gtgaaagtat ggagagaaaa
     1981 atacagagat tttatctgca aacaaaattt caaacttttc ctcagtatat ttttccttct
     2041 gtgtggagtt ctcctatgtg ggataaacaa tgggaataat acttagaatt ttaagcctta
     2101 tagctggctt tgttaccata gtgttgatgt gtggtttgta ttttatagcg tttatggttt
     2161 ttgttggcat agcgatactt atttttcttt ctatgcaacc ttatccttat aatataatat
     2221 tttgtgctat atatttaatc acaattttag cgctagtgct atggcgtaaa acttaaaaat
     2281 ttcacttccc ccttgactgg ggggggggat ttgataaaat acaaagttaa aaattttaaa
     2341 aacaaggaga aaatatggcc tacagatatg ataaagattt agaattctta aaagaattaa
     2401 gcagtccaga actcgatgag cttgtaaaaa ttttaaccca tgataaagac gggaaagttc
     2461 gttttactga agagttaacc aataatgatc tttataaaaa acattatcca gatcataaag
     2521 aatatatcga actcatttta gaagaatttc aaaaatttgg aggaaatagt attcttaata
     2581 tatttcgagg tggtggagtt ttataatgaa attctacgcg atgttgtaaa aaaatttgat
     2641 gtaaaatttg atgaaaatga aagtacaaac tccatagaaa catcactttt atgcaaatta
     2701 atagaagaag agttaaaaaa ttctcaagat gaaaatacat taagagaact tgtaaatatt
     2761 ttcgaacttg gcatttctaa tattaataaa caaacagttg taatgggatt gcaatctctc
     2821 attaaaatag gtggatttaa aagctatcaa attgcagtaa tagttgcaaa tcaagttatg
     2881 aaagttttac taggaagagg tttatctctt gcggcaaatg caacacttac aagagcttta
     2941 agtctttttt ctggtccggt aggttggaca attatgacca catggactgc attggattta
     3001 gctagcccag cctatagggt ttactatacc agcagtactt caaattataa ttttaagact
     3061 aaaacacaat acaaaaaact aaacacaagg aaatgcatta atggaaaata tttgccaatt
     3121 tatcatagaa aatattgata aaaattcatt aaatacaaaa aaaataaaac ttgttttcaa
     3181 tatgcaagag caagaaatta caacaatttc gaagatattt aaggtatctt cggaacacat
     3241 tattgctttt tatgatacct caacatcctt taattatttt agcaaaacta ccggaatatg
     3301 ttttactggc aaagaagtta tctttaaaag aaaagaagat gaagttttaa tgaaaatcaa
     3361 ctatgaagat ttcaaagagg caaataaatc cttacctgaa aaaacaacaa ctcttcaaga
     3421 catcaaattt cccatatctt ttcataatct tggaacatct tatctttcat ttgatgattt
     3481 caaaaagaaa aactacatag aagaaaatga tgagcttata ataaattttt tacacatctt
     3541 aacttcaaaa aataacatag aaagttttaa aaatgaaagt atgtttccac aagccttaga
     3601 aaaaacaaac gaaagtatta aagaaaacta tataaaagtt atcattaaaa taatattaga
     3661 tcaatacggt tttttagatg aaaaaagatc aatcaaaatt tttgctctaa tgaataaaat
     3721 taatgttgct tcagaaacaa ggtataaaat acaagatttt ttacataata aacattctag
     3781 ttttgaagat ttgctaaaca tcataaaaca agaatctaga tttatgcaat tcaaatatat
     3841 tttaatttca ctaataaaag acttaattga tatagatttt gaagataata aaatttataa
     3901 ttttttgtat gaaaacaaag acatttttaa aatcaaagac cttaaagaaa tctattggat
     3961 aaaagaaatc attaaaaaag aatatcaaat aatattagac gataataaag aaattcagca
     4021 aatttttaac tttatatccg aaacagctac aaaaaataat atatcgttaa acggtttata
     4081 tctttcagga atgacaattg gcatgtctgt atcaattatg gagttactag gatttgggga
     4141 attaataaaa ttaccactaa ttgattcttc aaaaaaatat cacaataaaa acaaacaaca
     4201 attacgtctt tttattattc aagaaattct caaagaaaat caaaaaacaa ttacccaaat
     4261 tattgatatc atcaataatt taattgagca atgtaataca aatacacaaa atttacaaga
     4321 attaataaaa ttattaaaat tggcttcaaa aaataatgaa acttttaaag aaagggaaaa
     4381 acttttatat tgcccagaaa cgctttcatt gataacaata aataatcatc taaaagaaga
     4441 tgatattcaa tttatagaac aatactatac ctataatcaa aatactcatg agtatgagcg
     4501 caatgacaat ctttcttcgt cagatttaga aaaactttca aattttttta aattaaaaaa
     4561 tctataagga taattttatg gataaaatac aagaaaacac caaaatagaa aaggctatat
     4621 tagccgaaaa acaacaaatc tttttaatac aaaataaatt atccgaaatt gaaaaaaata
     4681 tcaaagaaca atgtttaacc atagaacaga ttcaaaatag tatcacagaa aaaaatcaaa
     4741 atttgagcaa tatagaatat aaggaaaatc aatcaatcga ttcattggaa aattttttta
     4801 acacttatag caattgggaa acatattgtc aagaaattga aaaatattta aacttaaaaa
     4861 aaataaactc aaatgaagat tctttaaaat ttttgatcac ttattcaaat ttatcagatg
     4921 ttaaaaaaag aattgaagat gaatttaccc atagaaatgc agagtgcgat aagtatgatt
     4981 atttaatagc aataacatgt ggagcaatag ctggcattat ggacattttt ttagttggaa
     5041 atcctaaaga tagctatcta ggaaaaaagg tagataagac ggtagaaaaa atgactcaaa
     5101 aatttgcaca attatgtggt tgggataagc aaaaagcatt agacaaaaac aaagatttaa
     5161 ctaaaagtgc tatagcgttt ttggaaaaca aatttaaaat taattatgat caaactacta
     5221 caaacggaag aaatggaaca aatggaaaag tagataattt aagtatgaaa aatcatcatt
     5281 taaaaagcat aggtcactct ccagatattt tcgggttatt tgtatctata gtaaatcaat
     5341 ttaccaatac ttcaactttt gttagcaacg gaaaaatcat aaccatagat acaaatactt
     5401 ttgaattaca agggggaaat tttattgcta aaatattttg tggatttttt aattggtttg
     5461 gacatttagc atctgattgg tgtggatcta gtggaggaaa ggaaagaggt gcaggcattc
     5521 ctatgccttt ttataattta tttttacttt gtgattttgg aaattttgga caacatagac
     5581 aaacactagc acaaattgca acccaagttt ttgaacaagg atatgatctt aggcatggag
     5641 ttactatgtc tattcctgtt atgattaatg aaatgctaat tcgttttatg tatataataa
     5701 aagctaaatt ttaccacaaa aaagaatgga aagaatgtat accaaaagat gacatacctg
     5761 aattaaataa aatgctttta ataggatctg gtactttttt attaattgat actggtggtg
     5821 catggataaa aagtaaaaat cctataacaa atccggtagt tttcctttct gaaatcaatt
     5881 taattaatgt tataagattt agcactttaa ttcttaaaga aatttatata ttatataata
     5941 atggaaaaat agataataaa aaattagaaa aatatctaga tgacacttgt aaaattttat
     6001 taattgaagc tcataataaa tctaagcctt ttaaagaaat cctaaaataa ggcaaagcat
     6061 gaaccacctt ttaatccttt ataatcccta ctatcaagaa gatgtcatca agcaacattt
     6121 aagtatttta caagaaaaat cccaagttgc ctttggcaaa atcaaatcaa aactcaacga
     6181 tcaagaaaag caaaatttct tagaagaaat ttaccaaagt acaaatgaag aaaatttctt
     6241 gcaacttttt ttaagcgatt atgctaattt atttgtcgct aaggtggtaa aaatttctaa
     6301 aaatgtcgat gaaagtttga ttcctagtta ttataaagaa aaaaaattta gaagtggaag
     6361 acttttttat catcagtgat ttaagagaat tagtcaggga agattttagt cttttaagag
     6421 ataaattttt agccaatttc atcaccccaa acgatcacac ctatgccatt tatggcaata
     6481 attacaccta tcctttgcct gtgagattaa aagaagagtg tttttatttt ttaggagatg
     6541 aaaagcatta tctaagcgtg tataaaagca aagaatacct agccatgcaa gaaaatttca
     6601 tacgctttgt ttttggcaaa aggatttttt atctcttgca ccctgatagc ataagcaata
     6661 tcattcatgc agaattagag cttttacaaa gcgaaaacga tcttttaaat gattttacaa
     6721 gcattgtagt caaatactcc aaaaccttag aatatgaaat ttacgctttt gccaaaaaag
     6781 ttcttttaaa agcttgtatg aaagatctta gcctttatga tttaacttat aatgtccaag
     6841 gcaaatcttt tatacttaaa gattttttta cccaaaaacc caatcttgga agtattaaat
     6901 ttctactcag acatgaaaat atccaatatc atttaggaaa aagtttaact caatttatca
     6961 attatccttt ttcaaaaagt cttactatca ttcaagaaat ccgtaatgaa gccgttcatg
     7021 caaaagcccc aagtttaaat gaagtcaaaa aacttagaaa tgaaatttta ggcatagaag
     7081 gcgtaagttt gttaaaaaga attttaaccc acaaggaaat ttcatgaaag aatacgacaa
     7141 attaagcata cgcttggtgc agattttatc aaaatttaac aatggggaaa gtctaagcgc
     7201 ccaagagctt gcacaagagt ttaatgtcga tacaagaacc atacaaaggg atcttaacga
     7261 aagacttact tttatgccta ttaaaaaaga aaatggaaga tatgttttag aaagctttgc
     7321 tttggaaaaa ttaagcttta aagatataca gaatttcgcc accttaagtg gcattgctga
     7381 gctttatcca aaactcgatc aaggctttat agttgatctt ttaagccata gggtaaataa
     7441 agttttgatg gtaaaaaatg aaggttttca aaaggtggat tatgagcttt ttaaagatct
     7501 tagtgtggct atactcaaac acaatgtatt aaattttttc tataaggaaa aagaacgcca
     7561 aatcaaacct tacaaactcg taaattacaa gggaatttgg tatcttttag gggatgaaaa
     7621 cgataaatta aaacatttta atttagataa aatttcaaaa cttcacacta aaaatgaaaa
     7681 ttttatcccc gatgaaaaac ttgaggaaca aatccaaaat gatcctaata tctggcttgg
     7741 agaaagcaaa gaagtgattt taaagcttga taaaaatgct aaggaatatt tttttagaaa
     7801 agaaatacta agcaattgtc aaatcattga tgaagatgaa acaagctata ctttaagcac
     7861 tcaagtttcc tatgaagatg aaattttaca tttggttaaa cagtggatcc cctatataaa
     7921 aattctagct
//
LOCUS       DAPIWU010000074         7907 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.074, whole genome shotgun sequence.
ACCESSION   DAPIWU010000074 DAPIWU010000000
VERSION     DAPIWU010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7907
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.074"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            59..445
                     /locus_tag="RJ285_001321"
     CDS             59..445
                     /locus_tag="RJ285_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDV7384082.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            515..985
                     /gene="rpsG"
                     /locus_tag="RJ285_001322"
     CDS             515..985
                     /gene="rpsG"
                     /locus_tag="RJ285_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDV7384083.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            998..3073
                     /gene="fusA"
                     /locus_tag="RJ285_001323"
     CDS             998..3073
                     /gene="fusA"
                     /locus_tag="RJ285_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDV7384084.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLVSEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            3102..3178
                     /locus_tag="RJ285_001324"
     tRNA            3102..3178
                     /locus_tag="RJ285_001324"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3136..3138,aa:Arg,seq:cct)
     gene            3196..3345
                     /locus_tag="RJ285_001325"
     CDS             3196..3345
                     /locus_tag="RJ285_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384085.1"
                     /translation="MIKIAFFITFVISFLTAQSPVNFKEDNNITKEQNIFKEQPPKRI
                     KIPTH"
     gene            3351..4052
                     /locus_tag="RJ285_001326"
     CDS             3351..4052
                     /locus_tag="RJ285_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HDV7384086.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILANFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIELIEKNLKSNQIQGDIFHDDFNQFQSIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLTKANSMLKPNGTLYFCYEALALDE
                     ICFILKDMKIKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            4042..4416
                     /locus_tag="RJ285_001327"
     CDS             4042..4416
                     /locus_tag="RJ285_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HDV7384087.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVEFEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            4389..5666
                     /locus_tag="RJ285_001328"
     CDS             4389..5666
                     /locus_tag="RJ285_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HDV7384088.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELNNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACIKP"
     gene            5663..6439
                     /gene="trpC"
                     /locus_tag="RJ285_001329"
     CDS             5663..6439
                     /gene="trpC"
                     /locus_tag="RJ285_001329"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HDV7384089.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            6449..6934
                     /locus_tag="RJ285_001330"
     CDS             6449..6934
                     /locus_tag="RJ285_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDV7384090.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDCANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            6924..>7907
                     /gene="mnmH"
                     /locus_tag="RJ285_001331"
     CDS             6924..>7907
                     /gene="mnmH"
                     /locus_tag="RJ285_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HDV7384091.1"
                     /translation="MLSEVEFVEFQKENFSFLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKAMGASYICQNTAKHILEITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFALCGNTGCGKTELLEQLPQ
                     AINLEKMANHLGSSFGDILGKQPTQKAFEAELFHNIQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVRRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVMLLEYYDKTYKKPDKIDLELNTDDILKAKEELLDHFKA"
BASE COUNT         2842 a         1031 c         1541 g         2493 t
ORIGIN      
        1 ataagtaaat tttagatatc atccaaagtt tattacattt ttaaagaaag gaattattgt
       61 gcctaccata aatcaattgg ttagaaaaga gcgcaaaaaa gttttagaaa aatctaaatc
      121 tccagcgctt aaaaattgtc cacaaagaag gggagtttgc actagggttt atactacaac
      181 acctaaaaaa ccaaactcag cgttaagaaa agttgccaaa gtaagactta ctagtggctt
      241 tgaagtgatc agctatatcg gcggtgaagg tcataacttg caagaacaca gcattgtttt
      301 agtgcgtggt ggtagggtaa aagacttacc aggggttaaa tatcacatcg ttcgtggtgc
      361 tcttgataca gcaggtgttg caaaaagaac agtttctcgt tctaaatatg gtgctaaacg
      421 tcctaaagca ggcgctgcaa aataatcatt catacagaca aatccgttag atttgatttt
      481 gtttgagtaa aatttaaaat ttgaaggaaa aataatgaga agaagaaaag ctccggtaag
      541 agaagtcttg cctgatccga tttatggtaa taaagtaatc acaaaattta ttaattcttt
      601 aatgtatgat ggtaaaaaaa gcacagctac aacaattatg tatggtgctt tggaagctat
      661 tgataaaaaa ggtggcgaga aaaaaggtat tgatattttt aatgatgcga ttgaaaatat
      721 taagccttta ttagaagtaa aatctcgtcg tgtaggtggt gcaacttatc aagttccagt
      781 tgaagttcgt cctgctagac aacaagcttt ggcgattcgt tggattattt cttttgcaag
      841 aaaaagaagc gaaagaacta tgattgataa acttgcagct gagcttttag atgcagcaaa
      901 tagcaaaggt gcttcattta agaagaaaga agatacttat aaaatggctg aagcaaataa
      961 agcatttgct cactatcgtt ggtaagaagg agtgtgtatg tcaagaagta ctcctttaaa
     1021 aaaagttaga aatatcggta ttgctgctca cattgatgcg ggtaaaacaa ctacatctga
     1081 aagaattctt ttctttacag gcatgagtca taaaatcggt gaagttcatg atggtgctgc
     1141 aactatggac tggatggaac aagagaaaga gcgcgggatt actatcactt ctgcggctac
     1201 aacttgtttt tggaaagatc atcaaatcaa tcttattgac actccaggcc acgtggattt
     1261 tacaattgaa gttgaaagat ctatgcgtgt tcttgatggt gctgttgcgg tattttgttc
     1321 agtgggtggg gtgcagcctc aaagtgaaac agtttggaga caagcaaata aatatggtgt
     1381 tccaagaata gtatttgtaa acaaaatgga tagaatcggt gcaaatttct acaatgtaga
     1441 agatcaaatt cgcaaccgtt taaaagctaa tccagttcca cttcaaattc caatcggtgc
     1501 tgaggataat tttaaaggcg taatcgatct tgtaactatg aaagctttag tttgggaaga
     1561 tgatactaag ccaacggatt atgtagaaaa agaaattcca gctgaactta aagaaaaggc
     1621 agaagaatat cgcacaaaaa tgatagaagc agtttctgaa acttcagatg agttgatgga
     1681 aaaatattta ggcggagaag aattaagcct tgaagagatt aaaacaggga ttaaagcagg
     1741 atgtttaagt ctttctatcg ttcctatgct ttgcggtaca gcgtttaaaa ataaaggggt
     1801 tcaaccttta cttgatgctg ttgtggctta tttaccagct cctgatgaag tggcaaatat
     1861 caagggtgaa tatgaagatg gcacagaagt ttctgtaaaa tcaactgatg atggcgagtt
     1921 tgcaggactt gcatttaaaa ttatgacaga tccatttgta ggacaactta ctttcgtgcg
     1981 tgtttatcgc ggttgtttag aaagtggttc ttatgcttat aactcaacta aagataaaaa
     2041 agaaagaatt ggtcgtttgt taaaaatgca ctctaacaaa agagaagaga ttaaagtgct
     2101 ttacgcaggc gaaattggtg ctgttgtagg acttaaagat actttaacag gggatactct
     2161 tgtaagtgaa aaagataagg taatccttga aagaatggat tttccagatc cagttatttc
     2221 tgttgcagtt gagccaaaaa ctaaagcaga tcaagaaaaa atgtctattg ctttaaataa
     2281 attagcacaa gaagatccaa gttttagagt ttctacagat gaagaaagtg gccaaactat
     2341 catttcaggt atgggtgagt tacaccttga aattatcgtt gatagaatgc ttcgtgaatt
     2401 taaagttgaa gctgaagtag gtcaaccaca agttgcttat cgcgaaacta ttagaaaaac
     2461 tgttgaacaa gaatacaaat acgctaaaca atcaggtggt cgtggtcagt atggacatgt
     2521 attcttacgc cttgaaccac ttgagccagg tagtggatat gaatttgtta atgatatcaa
     2581 aggtggagta attccaaaag aatacattcc tgcagttgat aaaggtgttc aagaagcatt
     2641 acaaaatggt gttttagcag gttatcctgt ggaagatgtt aaagtaactg tttatgatgg
     2701 aagttatcac gaggtggatt catctgagat ggcgtttaaa cttgctgctt ctatgggctt
     2761 taaagaaggt gctagaaaag caggtgctgt gatcttagag cctatgatga aagttgaagt
     2821 agaaactcct gaagattaca tgggtgatgt tattggagat cttaacaaac gccgtggtca
     2881 agtaaatagc atggatgagc gtggtggaaa taaaatcatc acagcatttt gtcctttggc
     2941 tgaaatgttt ggttattcta ctgatcttag aagtcaaact caaggtcgtg cgacttattc
     3001 tatggaattt gatcactatg atgaagttcc taaaaatgtt gcggatgaaa tcatcaaaaa
     3061 aagaaacggt taaattttta gcgggatttt tcccgctttc tgtcctcgta gctcagcagg
     3121 atagagcgca aaattcctaa ttttgaggcc gtgagttcga atctcgccgt ggacaccatt
     3181 ttatgaggtg ttattatgat aaaaattgct ttttttataa cttttgtaat ttcttttttg
     3241 acagcacaaa gcccagtaaa ttttaaagaa gataataata taacaaaaga acaaaatata
     3301 tttaaagaac aacctccaaa acgcattaaa attccaacgc attaaaatat atgtcagatt
     3361 tgattacgct agcacaatta tcacaagggt atcgttacaa tagtgattct ttaattttag
     3421 ctaattttat tttaaaacaa ggaattaaag gcgctgtttt tgatgtaggt gcgggctgtg
     3481 gtatcatagg tattttactt aaaaaaaata ttgcaaattt aagtttatct ttgattgata
     3541 ttcaaaaaga aaatatagaa ttgattgaaa aaaatttaaa atccaaccaa atacaaggcg
     3601 atatttttca tgatgatttc aatcaatttc aaagcataaa aaaatttgac ttcatagttt
     3661 gcaatcctcc attttataga caaggagctt acaagagtga agatcagcat aaagctataa
     3721 gtaaatttca ggaattttta cccttgcata gctttttaac taaagcaaat tctatgctta
     3781 agccaaatgg tactttgtat ttttgctatg aagctttagc tttggatgaa atttgtttta
     3841 ttttaaaaga tatgaaaata aaaataacaa agctttgctt tgtacataca catcaaaaca
     3901 aaaaagcaag acttgttttg atacaggtaa aaaaaggttc aaaatcgcct tgtgagattt
     3961 tacctccttt ttttgtatat gaaaatgaaa ttttaagcaa acaaatgcaa gaaattcact
     4021 taagatttag gttaaaaagt tatgatattt gataaaaatt tttcttatgc ttttgatgaa
     4081 aatgcttgtg agaaatgcgg tggaaagtgt tgcactggag aaagtggcaa tatttttgcg
     4141 agcaaggaag aattagaagc attaagaaag catttaaatt tagaaagcaa agaatttgct
     4201 gaaaaatact tgagaaaagt gggctttaaa atgagtttta aggaagtcga atttgaagat
     4261 ggttttgctt gcattttttt tgatactcaa aaaagaaatt gcagtatcta cgattttcgt
     4321 ccaaaacaat gcagaacttt tccattttgg gaatatttta aaacacatca aaaggaatta
     4381 gaaaaagaat gtataggtat ttgttatttg tcttagcagc cttttttttg gcagcttgtg
     4441 gaagttcaaa aatcaatgtt gtttatcctg attatacaaa atataaaagc aatgattttg
     4501 atttaagggt tatgaaggct tataattatg agtattataa acaatacaaa gaagccagag
     4561 atgaattttt aagtctttat caagattata ataatactaa ttttttagaa aatgcatttt
     4621 tacttacttt agcaaacaat cttgacaagc aagcagagtt aaataatcta gcaaagcctt
     4681 atttaaatca aaatgacaat cttaagcgac ttagtgctct ttatgcttta aattcaaatg
     4741 atatcaacaa tgctcaaaaa cttatgaaag agcttttaac aaaaaaggat agtgatccta
     4801 gaaatttaga gctttacggg gatattttgg ttaaaaaaaa tgatttaaaa aatgctacaa
     4861 aatactatag atctgcttat aatcaagtgc aaaatgaaga aattttattt aaactcatag
     4921 gaatttatgc gattttgaat gatactttaa atattaaaaa tgttttagaa ttttcaagaa
     4981 aaaccaatgg ttgcactctc aaaacttgcg tcttgcttgc taaaatttat tttgatgaaa
     5041 aaaatatcga agctttaaaa agtatatata aagagcttta tcaacttacc aaaaataaaa
     5101 gttttgtatt ggctttagtt gagcttttaa attctcaagg caaaacagaa gaagctttaa
     5161 aaatttcttt gcagtatgat ttagatgatg acattaaact cgctttgtat cagaatttaa
     5221 aacgctttga tgatgctaaa aaaatgagtt tagctcttta tcataaaaca aaaaataaag
     5281 aatatcttct acgagcggca gtttttgaat ttgaagctgc aaatgaagct aaaaaaatca
     5341 ctccaaaagt aattgattct gtaaaagaaa aattcgaaca ggctatcgat aaagatagca
     5401 atgctttgta tttaaactac tatggatatt tgcttataga ttatgattta gatgttaaaa
     5461 aaggtataga gcttgtgaaa cttgccttag aaaaagatcc acagaatttg tattatttag
     5521 attctttagc ttgggggtat tataaactag gcgattgtaa gcaagcatgg gaaattttaa
     5581 aacaaacatt agatgataaa gaatttgcaa attctgatga gagcaaagct catataaaag
     5641 cgataaaggc gtgtataaaa ccatgatatt ggataaaatt tttgaaaaaa caaaagaaga
     5701 tttaaaagaa cgcaaactaa aacttcctta tgatatgtta gggcgttctt tagcttcaaa
     5761 tcctttcttt ccaaaagatg tgattaaggc tttaaaaaga gtagaaaaag aagttaaaat
     5821 catagcagaa gtaaaaaaag caagccctag caagggagtc attagagaag actttgatcc
     5881 tttgagtatc gctttaaatt atgagaagaa caaagctgcg gcgatttctg ttttaactga
     5941 gccgcatttt tttaaaggtt ctttagaata cttaagtctt atacgccgtt atacgcaaat
     6001 tcctttactt agaaaagatt ttatctttga tgagtatcaa attttagaag ctttggttta
     6061 tggggcggat tttgtattat taatcgctaa aatgctaagc atgaaagagc ttaaaaaact
     6121 gcttgagttt gcaagacatt taggtcttga ggctttggtt gaaattcatg ataaagagga
     6181 tttgagtaag gctatttttg ctggagcgga tatcattggt atcaatcatc gtaatttaga
     6241 ggattttact atggatatga gtttgtgcga aaaacttatc ccacaaatcc caaattcaaa
     6301 aatcatcatc gcagaaagtg gtttagaaaa taaagaattt ttagagcatt tgcaaaattt
     6361 aggcgttgat gcttttttaa tcggcgaata ttttatgcgc gaaaaagatg aaggaaaggc
     6421 tttaaaagct ttgctttaag gagggaaaat gcagtatttg tatgcaccat ggcggagtga
     6481 gtattttgaa aaagaaaaaa gcatttgtcc attttgtgat tgtgctaata agatcaaaag
     6541 cgatgaagaa ttaggcgtga tttttagagc aaagcattgt tttggagtga tgaaccgcta
     6601 tccttattct gcagggcatt ttatggtgat tccttatata catgaagagc atatagaaaa
     6661 tttaagtgat gaaatttggc aagaaatgag ttattttgtg cgtttggggg taaaaatttt
     6721 aaaagagcaa attcatgcaa atggagtgaa tatcggtatg aatttaagca aggatgcagg
     6781 agctggcata gcttttcatt gtcattatca tctagtgcca cgctggtcag gagatacaaa
     6841 ttttatcaca accataggag aaactagggt ttgtggcact aatatagagc aagtttatca
     6901 aaaacttgtt ttggctttta aaaatgctca gtgaagttga atttgtagag tttcaaaaag
     6961 aaaatttctc ttttttaatc gatgcaagaa gccctagaga atttttgcat tctcacttga
     7021 taggagcttt aaatttttat gcactcaatg atgaagaata tcaagaaata ggaacaattt
     7081 ataagaaaaa tcaagcttta gctaaggcta tgggtgcgag ttatatttgt caaaataccg
     7141 ctaagcatat attagaaatc actcaaaatt ttcgcatagg agaaaaggtg gggatttatt
     7201 gttctcgtgg gggtttgcgt tcaaagtcta tcgcagtgat tttaagtgag cttggcttta
     7261 gggtggtgcg tttaaaaggt gggtttaaag cttatagaac ttttgtaacg cattatttcg
     7321 aaaatgaaat aaattttgat ttttttgctc tttgtggtaa tacaggttgt ggaaaaacag
     7381 agcttttaga acaactccca caagctataa atttagaaaa aatggcaaat catttaggct
     7441 cgtcttttgg tgatatttta ggaaaacaac ctacgcaaaa agcttttgaa gcagaacttt
     7501 ttcacaatat tcaaaattta gaaaattttg ctttcataga aagcgaaagt cgcaaaatag
     7561 gggatattat cttacctttg aaattttatg aaaaaatgca aaaggctttt aaaatttatt
     7621 gtttttgttc tttggaaaat cgcgttagaa gaatacaaaa aatttatcaa gaaaaaatga
     7681 ctcctttgaa atttcaacaa tgtgtgcaaa aaatcagtcc ttatatcagc ttaaatttac
     7741 gccaagattt gcttcaaagt tatgagagaa aagaatggca aaagcttatt gttatgcttt
     7801 tggagtatta tgataaaact tataaaaaac cagataagat tgatcttgag ttaaatactg
     7861 atgatatttt aaaagctaaa gaagagcttt tagatcattt taaagca
//
LOCUS       DAPIWU010000075         7870 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.075, whole genome shotgun sequence.
ACCESSION   DAPIWU010000075 DAPIWU010000000
VERSION     DAPIWU010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7870
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.075"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..1175
                     /locus_tag="RJ285_001332"
     CDS             <1..1175
                     /locus_tag="RJ285_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HDV7384092.1"
                     /translation="RRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEILNFFGLEFLN
                     IDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSGPIMRSSFFFE
                     QAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNFIQLLSAIYAY
                     AIQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKDFWARWHISLSTFIRDYI
                     YIPLGGNRKGIPRTVANILIAFILSGMWHGNTLAFIVWGLLHGIGIVFIHLLTLSKFS
                     LQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPSYNDIYMLVAF
                     GVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGIPDFIYSSF"
     gene            1176..2186
                     /locus_tag="RJ285_001333"
     CDS             1176..2186
                     /locus_tag="RJ285_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HDV7384093.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFVKNSNIKYLVVLLGANDPWDIKKGGSYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKREELNKKIQILNKIYSDEILKNKEIF
                     INTKLFFSVNDQYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            2173..3351
                     /locus_tag="RJ285_001334"
     CDS             2173..3351
                     /locus_tag="RJ285_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HDV7384094.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKNNNVFLDTIAINGAKSDLWLSWNQEVVKKELELLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(3354..4724)
                     /locus_tag="RJ285_001335"
     CDS             complement(3354..4724)
                     /locus_tag="RJ285_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDV7384095.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMEELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLGN
                     DQNRNLLIKNLQDLLAKQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(4726..6651)
                     /locus_tag="RJ285_001336"
     CDS             complement(4726..6651)
                     /locus_tag="RJ285_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7384096.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(6651..7823)
                     /locus_tag="RJ285_001337"
     CDS             complement(6651..7823)
                     /locus_tag="RJ285_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDV7384097.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVIASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
BASE COUNT         2697 a         1314 c         1034 g         2825 t
ORIGIN      
        1 tgcgtcgcaa gcgttatatt ttcgctactt gcatggcttt tattatttta aatttatgtt
       61 tttttaaata ctttcctagc atcaaaggaa gtgttgatga gatattaaat tttttcggtt
      121 tagaattttt aaatattgat ttagtattac caataggaat tagtttttat acctttactt
      181 ctatcaccta tcttgtagaa gtttatcaaa aacgccgttt agaaagtttt ttaaatttag
      241 caaccttctt atcatttttt ccaacattac tttcagggcc tattatgcga agttcttttt
      301 tctttgagca ggcctatcaa aaacgcgaat ttaaacatgc aaatttaatc atcatcttgc
      361 ttgtttttgg tatagttaaa aaagttttaa tagccaatta ccttggaatt tatgctaaaa
      421 gtattttaga ctttccacaa tcttataatt tcatacaact tttaagtgca atttacgcct
      481 atgcaattca aatatactgt gattttagcg gatatgttga tttagtttgt gcttttgctt
      541 taatgttagg ttttaccctt ccgcctaact ttaacatgcc ttatcttgca aaaaacctaa
      601 aagatttttg ggctagatgg catatcagtc tttcaacttt tataagagat tatatctata
      661 tacctttagg gggcaataga aaaggaatac cacgcactgt agctaatata ctcatcgctt
      721 ttatactttc aggtatgtgg catggcaata cacttgcttt tattgtttgg ggtttgttgc
      781 atggtattgg catagttttt atacatttgc taactttaag caaatttagt ttacaaaaaa
      841 ttccagcttt aggaagattt ttaacctttc aatttgtatg ttttacttgg attttctttt
      901 attatagcaa aaatctagaa gatgcaatag aatattttaa agcttgttat tataatttct
      961 tccaaattcc atcttataac gatatctata tgttggttgc ttttggggtt ctttttatga
     1021 tctatccttt atttattaat tttaaagaat attgcattaa gattttaaat cttactccat
     1081 ttttgctaaa accttttatt atagctttta ttttactttt ggtttttgct tttatgccag
     1141 atggaattcc tgattttatt tattcgagtt tttagatgag tgtagttaga tttttcttta
     1201 ttttgattat agtgcttggc ttggttgttg tagttatgaa tcagagtatt agctcttata
     1261 tagaacaaaa atatcacttt gcattctatc ctcataatga tcttttaaaa gaagccaatg
     1321 gcttcaaaat taaattagaa caaattcgtg caattttaag caacgaaccc ttgcctcaaa
     1381 ctaatgaaga aactacaaat caagaaaata aatcaataga tgaaaactta agtaaaatag
     1441 ataaagttct aaacacttta gaaaatgatg aaaacacttc tcataaagaa acaaatccaa
     1501 ccttaatcca agatgcaaat attagtttta tcgacaatac caaattagaa ctacaaaatg
     1561 gagatgagtt tttatttatc ggagattctt taatgcaagg tgttgcaata gccttaaata
     1621 gagatttaag aaatttaaat cttaaggtaa ccgatcttag caaacaaaat acaggccttt
     1681 cttataaatc ctattttgat tggtcaaaag caaccaatga agcttttgtt aaaaactcaa
     1741 atattaaata tcttgttgtt cttcttggtg ctaatgatcc ttgggatatt aaaaaaggag
     1801 gaagttatca tcgttttggc tccccttctt ggatagatat ttacacaagt cgtgtagatg
     1861 aaatcattaa gatcgctaaa aaacataaag ccaaagtttt ttggtttgaa atccctcctg
     1921 taaaaagaga ggaactaaac aaaaaaatac aaatacttaa caaaatttac agcgatgaaa
     1981 ttcttaaaaa taaagaaatt tttatcaaca ctaagctatt ttttagcgtc aatgatcaat
     2041 actcagctta tataaaagat gaaaacaata gaagtataaa agtaagaaca gatgatgggg
     2101 ttcattttac tccaagtggc gcaagagaaa tgtctaaact tttattagaa cacataaaac
     2161 ttaaggaaga aaatgctagt aaataaattt aaaattatct tattgttttt tattattttt
     2221 actagctctt atgcacaaaa tttaaataca aatgacacaa tagattccat actcaatcaa
     2281 aacaaaaatc actctgcttt aacaagttat gtattaaaaa aagatcttaa aaatctagaa
     2341 aaaaaattag aaaaaaatca aaacatagga attagaattt atggagattc tcatatggcg
     2401 gctgatttct ttccgcgtgt cataagagga tatttaatcc gttctaactc tataggtttt
     2461 gcctatcctt tacagcctaa atatcaacaa aatcttaatc ttgtttattc ttataaaaac
     2521 tttgaaattt taaactcaag aaatcctgct aatgctggac ataattttcc actaggtggg
     2581 ataatagcca aagcaaaaac taaaggcgca aaaatcaacc ttgatacaac cctagataaa
     2641 aaaaaattca aaataggatt tttatttaag gccaagcaaa ataccaatgc ttttagcatc
     2701 aaagatgcaa aaaaccaaag ctatgagtta agaactacac aaattaacaa atggtcttat
     2761 aaagaactag aacttgatct tcctttgcaa atttcagcct tacaaaagga tgctgaacta
     2821 ggaggatatt tcatcacaaa taaaaataat aatgttttct tagataccat tgcaatcaat
     2881 ggtgccaaaa gtgatttatg gctctcttgg aatcaagaag ttgtaaaaaa agaactagaa
     2941 cttttacaca atgatttaat tattcttgcc tatggttcta atgatgcact ctttaaaggg
     3001 tttgaaaaac aaaaatttaa aaacaattta aaaaaatgga ttagtatttt aaaaacttac
     3061 aataaaaacg ctgttatcat gctaatctct ccaccaactg tagttcaaaa acaaggtaaa
     3121 aactacaagc ttgctcctga tttttttacc atacgcaaag cattatatga agttgctaaa
     3181 gaagaaaaaa ctcttatttt tgatatgcat cagtttatgc aagatagtgg aggaaaaaac
     3241 aaatggatag aacaaaagct ttcgctcaat gatgtacatc ttactataaa aggctatgag
     3301 ctgatggcta aaaagttact cgaggattta aaaaatatca tcgattatta aatttaatac
     3361 ttaggaaatt ctaagttttc atcattaaaa cttaaagctg tgatttgata gtaagaatta
     3421 atggttttta aaagattaaa tctagctctt agaaattctt gctgggtaga atttaaagta
     3481 ttgtttgcat ccaaataatc ttttaattca ctttttccta aaatatattt ttcataatac
     3541 gccttagtga taagctcttg tttaatgtta atattttgca aattttgtaa aagcaaggtg
     3601 tcgctttgat aatctttata attcaatgca aattcattca tcgcactttg caaggcttgc
     3661 tcataagaaa ttaaaagttg ctcataggta aattgtgaaa ttttgatatt ttgctttact
     3721 ctaccataat ctaagaaagg taaagaaatc ttaacattgc cacttaaaat ttcaaattta
     3781 aaactatcat cgattttttt atcacttccg cttaatgctc cacctaaaga aatactaggc
     3841 aaaatagatt tttgcatgga agaataatcc ttaaaggctg attttaagct attgagttta
     3901 gatctcacat ctgcacggta cgctaaagct tttaaaggta tattaaaatc aggacttaag
     3961 gttttaaaat catttaaaga taaagtttta aaatactcta tataagcaaa accttcttgc
     4021 tttgccaata aatcttgtaa attttttatg agtaaattac gattttgatc attgcctaat
     4081 aaattttgtt tagctcttaa taagctttgt tctatgttta aaagatctaa ttcttctatt
     4141 tttccaagct tgtatttata attataaagc tcttccattt gttctaaatt tgaaagataa
     4201 gctcgaagca atttatctac atcgttaaaa taagccagct caaacacatc atttaaagct
     4261 gtattgatca tacttatttt taaattttca agatcataag cacttgcttt tgcactaaat
     4321 tcactcgcac ttgcactatc tcttaatttg ccataaatat caagctcata gcttaaattt
     4381 aaagaattat tgaaattttt actttgtttg cctgaattta aatctttatc cgcaccaaaa
     4441 cccaaatttc cacttaaagt cggatataaa tcataatcaa tcaaatcagc tctagccaaa
     4501 gccgaaagca aagtttttct agcaatatta atatcactat tattcaataa aacaaaattt
     4561 agaaattcat ttaattttgc attatcataa gatctatacc aatcataagt aagatttaaa
     4621 tctttcattt gttcttgagt taaatcaact tctttaggca agctaagttt tacaccacaa
     4681 gcgctcaaga aaaatgctaa aaaaatgcta agtattattt tcattttatt cctttgataa
     4741 tgcactaata ggatttaaat ttgctgcatt tcttgcaggg aaaaaaccaa aaaccacacc
     4801 gataaacata gaacttaaaa gtcccaaaag cacagaatag gcatttaaaa tcataggaaa
     4861 atccgtactt aaagtattaa aagcaaaaat aacaaaaatc gataaaatca cacctaaaat
     4921 cgcccctata gtacaaatca taaccgcttc gattaaaaac tgcatcataa tatcttctct
     4981 tctagcccct atagccatgc gtatgcctat ttctcttgtt ctttcactta cagaaacaag
     5041 catgatattc atcactccta tacccccaac aatcaaagca atcacagcca cacaagcggt
     5101 aagtatggtt gtagtgcgtt tatttgctgt aatagcttgc ttaaaagtgt cagaattaaa
     5161 agtaaaaaaa tccttttgtc cgcgtttaat ttctaaaatt cttataatag cattttcagc
     5221 caaagttgaa ctcacatcat ctttaacctt aactatgatt tcacgcaaat ttctatctcc
     5281 tgtaagctta ttcatcagtg ttgtataggg tatataaaga cgtactacat tatcttctat
     5341 aggcttgtct gtatcttttt gcaaaactcc tataatctta aaaggttgag aattaaaaag
     5401 caccacacga cctaaaatat tttcactttt ttcatcagga aaaagatttt ttttagcatt
     5461 aaaatccaat acagcaacat tggtactatt ttttacatca tcattattta aaattcttcc
     5521 cgcatctatc cttaaacctt ctatagcaaa attatttacc cctacccctt cagctcttgc
     5581 gcttaaagaa atattggtat aagttgccac tcctgaagta tttgaatgag catcaactgc
     5641 ttctaaatat tctaaagatc ttaatgtttc taaatcacta aaattaagcc ttgttttacc
     5701 cgaacgcaaa tccccaaatc cttttccagg gcgaatttca atagtatttg tcccaagtct
     5761 tgcaatagac tcaagcactt tagcttgaga gcctaatcct aaagctacaa cacaaactac
     5821 agaagcaata cctatgatga ttccaagcat agttaaaata gaacgaagtt tgtgtgcaag
     5881 tatggaagaa taagctatct taaaacattc aaaggcttga tttttaagca aagtaagtgt
     5941 ttttttctct ttgggcattg tttttaaaat aagtttttct tgagcttttt cctttttagt
     6001 atcgcttaaa atttctccat ctttaatctc tataaccctt ttagcctgtg ctgcgatttt
     6061 tggatcgtga gttactaaga ctatagtatg accttgctcg ttaagttttt gtaaaatttc
     6121 aagcaccata ataccgcttt tactatccaa agctcccgtt ggctcatcag ccaaaataag
     6181 ctctccgcca ttgattaaag ctcttgctat agaaacgcgt tgttgctgcc ctccgcttaa
     6241 ttcgtttggc ttagaatcta acttgtgagc taattctaaa tcatttaaga gttttttagc
     6301 attttgactt ctttcttgta aattttttcc cgcataaact gcaggtaaag aaacattttc
     6361 tttagcactc agcaagctta aaagattgta tctttgaaat ataaagccta ttttttcacg
     6421 ccttaatctt gctttttcat cattattaag tttagtgact tcatactcat caaaaacata
     6481 agttccacta cttggcgtat ctaatgttcc tatgatattc aaaagtgaag ttttaccact
     6541 tccactttgt cctataatag caacaaattc acctttttct atacttaaac ttacattttt
     6601 taaaatggca ttttcgccta tatttttgca aatattttta agaaaaatca ttaaaatctc
     6661 aacttcattt taggagctaa gccatcagca cttgagctta ctatcaattc ttcatcttca
     6721 tttacacctt ctaaaatttg agtattgata gaatctttaa tgccaagttt gacatatttt
     6781 ttaacagctt tttgattttc caaaatttca acataatagc cttttggatc gcttttaatt
     6841 gcataagttg gcactgctaa aacagccttt gcacttgcta tgacaatttc attttgtata
     6901 ctcataccaa tacgcaaaaa atcatcttta ttggctacat aaaattttgc gtaataataa
     6961 atagcatttg atgagcttga gcttgaagaa ctcgaacttg atgagcttga gcttgtacta
     7021 gaatcactca cttcagtatc agctggatct atacttgcaa tcttagcatg ataagttttt
     7081 tgaggatcat taagcaaaga aaaatcaagc tctgttccta cttttatctt actcacatca
     7141 gcctctgcta tttccattct tacttccatt tcgtctaaat tagctatacg gactatagta
     7201 ggagtgtttt gattagcatt aactgtttgt ccttcatcta cagctacatt aatcacaaca
     7261 ccatccatag gagcagtaat ggttgtataa cctaaatctt tttgtgcatt tttaagagtg
     7321 atttcaagct gaactacttg agcattaagc tctgcaacat tggcttttaa agtataataa
     7381 ttattttttt gagtttctaa attttcaaga gaacttgctt tagctgcata aagtttttgc
     7441 tctctttgat attgcttatt cgcaatctca agggcaactt ttttactctc taaattagcc
     7501 ttagcacttt caagctgagc ttttgtaata tctaaatcgt tttgttgttt atctttatca
     7561 atttgagcga tcaaatcacc ttgctttaca tgagttccca catcaacata aagttttata
     7621 atttgtccac taacttgagc acccacatcg acttgatctt tggcatatac ctttcctact
     7681 gcctctatgg tttgagatat atcttttttt tgtatttttt gagttaaata gctgattttt
     7741 tcatcattat taaaaaaaat aaaataagcc ccaacacttc caagtattgc aattaaaatg
     7801 attaaaacaa tcttcttttt cataataaca aatcctaaag aaaaatcaag attaaatttt
     7861 actcattttt
//
LOCUS       DAPIWU010000076         7702 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.076, whole genome shotgun sequence.
ACCESSION   DAPIWU010000076 DAPIWU010000000
VERSION     DAPIWU010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7702
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.076"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..887
                     /gene="msrP"
                     /locus_tag="RJ285_001338"
     CDS             <1..887
                     /gene="msrP"
                     /locus_tag="RJ285_001338"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDV7384098.1"
                     /translation="TPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNPNKL
                     EISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDILKF
                     PLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPDQDA
                     LFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSIKSI
                     VKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLMFNG
                     YEKEVASLYKNMDLKVNF"
     gene            887..1459
                     /locus_tag="RJ285_001339"
     CDS             887..1459
                     /locus_tag="RJ285_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HDV7384099.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWAILHFLNYFIFDRNAQILRLFNDISHR
                     LLEASGFIAFLIIFLMLLSSFKIFKKLIKIRKLGYLCLVLASYHYFLTPKIPMFWEWS
                     ALIIALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(1424..3136)
                     /locus_tag="RJ285_001340"
     CDS             complement(1424..3136)
                     /locus_tag="RJ285_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7384100.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLSLISENDLERHKNKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEI
                     LQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDK
                     KVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIF
                     LEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFE
                     KDFDINILSNYELSGAQILMVVKNTALKVAVSKDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(3136..3960)
                     /locus_tag="RJ285_001341"
     CDS             complement(3136..3960)
                     /locus_tag="RJ285_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384101.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKSVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTKNQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(3971..4447)
                     /locus_tag="RJ285_001342"
     CDS             complement(3971..4447)
                     /locus_tag="RJ285_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384102.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(4456..4947)
                     /locus_tag="RJ285_001343"
     CDS             complement(4456..4947)
                     /locus_tag="RJ285_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDV7384103.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(4937..5872)
                     /locus_tag="RJ285_001344"
     CDS             complement(4937..5872)
                     /locus_tag="RJ285_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HDV7384104.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(5875..7044)
                     /locus_tag="RJ285_001345"
     CDS             complement(5875..7044)
                     /locus_tag="RJ285_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HDV7384105.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVINNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(7054..7659)
                     /locus_tag="RJ285_001346"
     CDS             complement(7054..7659)
                     /locus_tag="RJ285_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HDV7384106.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
BASE COUNT         2610 a         1335 c          877 g         2880 t
ORIGIN      
        1 taacacctga aaaactttat aaacaaagga gaaatttttt aaaacttgga gcgggtgctt
       61 taataagttc aagcgtgctt gcttctaaac tatctgcttt aaatttcaca agcgatacta
      121 atccaaacaa acttgaaatc agcgatgaag aactggctac aaattatgtc aatttttatg
      181 aattttcaac agataaaaga aaggctgtat cattggcaca aaatttcaat actcaaaatt
      241 ggaaaatcga tatcagtgga gaaatagaaa aacctttaac tttaagcatg gaagatattt
      301 taaaatttcc actagaagaa agaatttatc gttttcgctg tgttgaaact tggtctatgg
      361 tggtaccttg ggtaggcttt gaattgcgtc gtttgattga aatggcaaaa cctacaagcg
      421 aggcaaaatt tgttaaattt accactcttt tagataagag ccaatttccc gatcaagacg
      481 ctttatttcc aactatagac tatccttatg tagaaggact tcgcatggat gaagctatgc
      541 atcctcttac cttgcttgca gtaggaatgt ataaaaaagc cttaaagcct caaaatggcg
      601 ctccaatacg ccttgttgtt ccttggaaat atggctttaa aagtattaaa tccatagtta
      661 aaatagaatt taccaaagaa cagcctaaat ccacttggga aagttacgct ccaagtgaat
      721 atggttttta tgctaatgtc aatcctaatg tttctcatcc tagatggtct caagctaacg
      781 agagggcttt aggagacttc tttaccaaac ctactttaat gtttaatgga tatgaaaaag
      841 aagtggcaag tttatataaa aacatggact tgaaagtgaa tttttaatgc agacaaaata
      901 ctttaaattt cttgcttatt ttagctttat cataagttta atctatggct tttatcatat
      961 cataaaagcc tttgattttg taaaagaagc ctatatttac actggaatat ttgctttaat
     1021 ctttttaaat ttaagtcttt tattttcttt acttaaattt aaaaaaacaa aaaattatcc
     1081 taaaatttta ggtatttttg cagctttttg ggcgattttg cactttttaa attattttat
     1141 ttttgataga aatgctcaaa ttttaaggct tttcaatgat atttcacatc gtttattaga
     1201 agcaagtgga tttatcgcat ttttaatcat atttttaatg cttttaagtt cttttaaaat
     1261 ctttaaaaaa cttattaaaa tcagaaaact aggatattta tgcttagttt tggcaagtta
     1321 tcattatttt ttaaccccaa aaattcctat gttttgggaa tggagtgctt taattatagc
     1381 tttgttttat tttatagttc gctatacaaa aacattaaaa aagttaaaat ccaacaatct
     1441 tacttttatc aaaacttgaa tttaattctt tttgtatgct ttctataaaa tcttgcattt
     1501 taaaaacccc atcttttgat acagctactt tcaaagctgt attcttcacc accattaaaa
     1561 tttgtgctcc acttaattca taatttgata aaatatttat atcaaaatct ttttcaaata
     1621 atgctttttt aggtagaaat ttttcccaaa ttttaagcct atctttaaaa tcaggttttt
     1681 taaattctat cttataatca aatcttcttg aaaatgcact atctaagctt tctaaaaaat
     1741 ttgtcgtagc gataatcaca ccactaaaac gctcaatttg ctctaagaat atattttgca
     1801 tttgattatg cattttatcg ctaccactac ttccatctac acgcgtactt aaaaactgat
     1861 cagcttcatt gagaagtaaa ataggacttt gtttacaagt ttgcacgata tttttataag
     1921 tatcaaaaat ttttcttaca ttttgctcac tctctccaac ccatttgctc aaaattttag
     1981 aacagtcaaa actaagaaca gattttttca ttgatttagc catagctaaa gctgacatag
     2041 tttttccagt accagcagga ccataaaaaa taattttagc ttctatattt ttattactct
     2101 ttatacccca agaatgaagt ctttctagga cttttttatc ttgttgtttt aaaatatttt
     2161 ctaaaagctc ttttgtattt tcaggcataa taatatcatt gatgtcagtg cttggttcta
     2221 taagctcgaa aatatcttga tcttttaaaa cactttcaat tttgattttt ttactttgtt
     2281 ttggttcaaa atttataatt ctttgtaaaa tttcatcgat aataaaaaaa cttttagaaa
     2341 tatctccaaa agcatttaaa tattcatcat actcgattaa gtttaaaaga ggagcatttt
     2401 cttgtaatag ttttttattt ttatgccttt ctaaatcatt ttcactgatt aaagaaagta
     2461 aagaattcat ttctctagaa atcgaacttt cattacttaa ggcgtattct tcttttaaaa
     2521 gtgctagaaa aataatttgt tctttatgtt caagattgta ttctttaaaa atatcagcca
     2581 atacattata aaatttactt ttttttagtc tttctttgat atgtttttca taaagtttaa
     2641 tttgattttt tatttcacta ttataagcac ttttttgtat aaaacttaat ctttcgtata
     2701 attgaatacg cgcaaattca tcttttaaat attctaaata atctgcataa gcctcttgtt
     2761 tctcaaaatt taaacgaggt tttgcttcta aaaattctaa aaaatattca cttagactaa
     2821 gctcactttg caataaggca agagttaatg tttgagtttt attattttct aaacttttaa
     2881 aaaaactcga attttgattt acaaaacctc tttcgataag tttttttaaa tcctccaaag
     2941 catcaagata aagatactta tcatttccaa aaattgtcga taataaagta aaggcattga
     3001 tagaagaaat agaaacgaca taatttctac aaagttctct aagaatcaaa gcctcatttt
     3061 tagcacactt aagctcttta taaatttgag tatcttctat atttttcaaa cttaaaaaat
     3121 tttttaattt ttccattatt ttttaaattc cttaagctca tcttcgttaa attctacgca
     3181 aatattttca tctaaaaaat gaccttcaaa aggtagataa caaattttta gttttccatt
     3241 attaagcaaa aaattattat taaattgtaa attttgcaga tcttcaaaac actcatcaca
     3301 tgtattttta agcttctcat gtaaaagatt ttgaaatttt tgatttttag tattatacaa
     3361 atcatttagt tttacaaatg cgtgagcatt aatatcataa acaaaattat ttaactctaa
     3421 aatagcacgg ctcataccat cttcataaaa ataataccat tcttcaaaac taatttttcc
     3481 atcttgtaaa aaaataggct tttggcgaat ttgttcaaaa ctaaatacac tcttatgaac
     3541 aggatgaaat tctttaaaat catcattaaa acctataaaa tcaagactac gctttatacg
     3601 aatgccatct tgcgtttcaa caagttctaa agtagttgtt cctaaatttt ctccttgaaa
     3661 atttttatta tcatatgtaa gcattttaga agaattgatt ttatattttt tacgctcatc
     3721 ctgccaaaaa tcatttgtct taacgagcgg aatctctaaa tttccattta tatcatcaat
     3781 aattaaaaaa ctagaacttg tttgattttt atccctgtca aaaagtggag tcataggcgc
     3841 attatcataa actatggcaa aaatttcttt atcctgcaaa tgataaaaat acaattcacc
     3901 tttataaact tgcgctaaag ctagatttac aaagcaaaat accagtaaaa aaaatttcaa
     3961 actctatcct ttaattttga atatgcgtta agataatttt agtatgtgaa attttatcaa
     4021 aaaaacttac tttattatca caaacttgat aaaaaatttc ataatttttt gcttttaaat
     4081 tttgttcaaa accacaatca gttttttcta aatttttacc ctgccataaa gcatttgcct
     4141 ttaaaatatc acttaaaata tcatcataat atacattttt aaaaaatttt tgattaaaca
     4201 cttttttatc ataacacact gcattgatac aaattttatc tttgattttg agttcaaaaa
     4261 aagcttgccc tagtttataa acttctaaat ttaaagcatt attttctttt tttaaaaaag
     4321 ctgcgtcatt gatttttatc ataggagaag caatcaaaac catcaagctt tgactcgaaa
     4381 aattttgatt tttcacacta caagcacaaa gaaaaaaaat aaaacacaga gctaaacaat
     4441 gcttcaaatt tgaccttatt taagattttt aaaactgata tttaactcta aatcaagctc
     4501 ttttacaagc ttcatcacag cttgtaaatc atcaatttgt tttgctacaa cacgaatttc
     4561 ttcaccacga atcgaagaat taactttaag tttgctatct ttgatagctt tattgatttt
     4621 tttggcattt tcactatcaa tagcatcgtt tgctttcaaa tttaaacgaa acattgctcc
     4681 actttcacga gaaagctctt taatagcatt aggattaatt cctcttttga taagtttaga
     4741 aatcactata tcttttaaaa catcaagctt tccttcacta gaagaactga gtttaaaaat
     4801 actctctttt tcgcttaaat caatctcaca cttaattcct tttaagtcat aacgactatc
     4861 aagttctttt ttagcttgtt caaaagcatt ttttaactct tgtttatcta aagctgctga
     4921 aatatcaaaa ctatgttcac ttgccatttt ctatccattc ttttaaatta ttataaacta
     4981 tatccattaa agcatttaaa gcctccttgc tcgcccacgc aacatgagga gtgataataa
     5041 gattttcttt atttttaatg cttaaaagtg gatgattttt catcataggt tcaatttcta
     5101 aaacatcaag ccctacacga atattttttt catctatgat tttagctaaa tcattttcat
     5161 tgacaatccc acctcttcct acattaatca aaatcgcatt atcttttaaa agctttaatt
     5221 cttcaaaggc gagtaaattt ttggtttttt catttaaagg tgcgtggata cttataatat
     5281 cgcaagtttt taataaatct tttaattcca aatgtacaaa atctgcgttt ttattagctc
     5341 cactcgtaga ataataataa atttcggctc caaaagcctt tgaaattttt gccacttctt
     5401 tacctatggt tcctaaacct ataataccat gttttttgcc acttaaggtg tttaaaattc
     5461 tactataatc tgtaaaaata ggactttcac accatttacc ctctttgctc catttgtcat
     5521 aataaagcac ttgatttaaa aaagcaaaca taaacgcaaa agtatgttgc accacactca
     5581 tagtagaata cccagcagca ttttttacaa taataccttt ttctttagca tactcaatat
     5641 cgatattatt aacccctgta gcagtttcca aaatgagttt taaattttta caagcatcaa
     5701 tcacatcttt atcaattaca accttgtttg tcatggcgac attagcatct tttaaacgct
     5761 ctatggtttg ctctttattt gttgtggtat aaatttgcaa agaaccaaat ttttcaaaaa
     5821 cacttaaatc ataatcccct aaagttgccg catctaaaca aacaattttc atttctaatc
     5881 ctttataata tgtcctacaa atttagaata attatcaagc acaagtcctc cttttctaaa
     5941 tcctaagcca cacccttcat aagcaaagaa aacacctgct tgatagtatt cgttttcaca
     6001 tgaattaaac tctacatatt cttgataaat agccttatta ttcccataag gacctacatt
     6061 ctcatgcaaa gtttttccat ctttaattat actgatattt gcaccttctc taccaaaaac
     6121 aggtttttta acatagtttt taccttccaa aggagtatct tttgtttcta aaagtaatgg
     6181 atgatttgga taaagttccc atagaatttt taaaattccc ttagattgaa ataaaagcgt
     6241 ataagcagga tttaaaataa ttgctctttg attacgcatg atttgagtta aaagcatagc
     6301 aagttcaccc tcttctatgg ctatatcttc ccaaggaata agcttaaacc aatactcata
     6361 attttcaccc tctttaaaaa ttccttcttc actaaattct acctcatcta caaaggaaaa
     6421 attagtttga aaacctgctt cattggctat atgtgcaagc aattttgtag tgatttcctc
     6481 ttctttactt cctgcaacac ttgaaaaaag aattttccat ccttgataat gctcttcaaa
     6541 cccttcaaca ctttcatcaa gggtaataag tcttttaaaa ttatccatca aactttcata
     6601 aatgctgtta aattgtgcgc tttcatccat tccattttgt tttaaaagtg cccattgtaa
     6661 aatcgcactt tcaaaaagag cagtaggggt atcagcatta aattctataa gttttatagg
     6721 cttgccatca agtccacccg ctaaatcaaa acgcccatat aaatgccaat gaacctcatt
     6781 ttcccaactc atcttaatcg catcaataag attaaaagga attccaagct catcaaaacg
     6841 atcattatta atcacttctt gcgctgcagc aataaacata tcataaagct catttaccgc
     6901 ttcataataa gcattagctt cactttcctt aacacaaact aacttattgc taatataatc
     6961 acttccatct tcatctgtat gccaagaaaa acctatattt tctaaataat ctttttgaag
     7021 tttgtctact tgtaataatt gcattattta tccttaagag ccaaaagaag aactagaact
     7081 tgtggcttta gagcctccac caaaaaaacc tgatttttta gcacttgaag cagagcttgt
     7141 tgtgcctgct ttattaaaac tattaacact cctttgataa gcactttgat ttgaaaaagc
     7201 accgcgttgt tggttggcaa aattttgatt attgaaaagt tttgaaccta tccaacttcc
     7261 taaaatagca cctgcagcac ttgcgagtaa agtttcccct aaactcaatc ccccactact
     7321 gatttgtcca ttgtctttag ttaaatttga agttccatta tcaattttag ctgcttcttc
     7381 tttaatcaaa gcatccattt cttctttgga taaaattctt tctgtaccat taagatcttt
     7441 taaaactacc cttgtttcat cacttggata ttgatctttg attttatact gccctggagc
     7501 tgtttcttcg ataattacaa aagctccttg agcattagct gcttgattta aagtatctgc
     7561 attgtcatta ttacttccac aacctgctaa agcacctcca gcaacagctg ctaaaccacc
     7621 tatcatacca atttgaatga tttttttgat ttttttcata agtttatcct aaaaacagaa
     7681 aatttaaatt agaaatttta ac
//
LOCUS       DAPIWU010000077         7591 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.077, whole genome shotgun sequence.
ACCESSION   DAPIWU010000077 DAPIWU010000000
VERSION     DAPIWU010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7591
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.077"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            1..497
                     /locus_tag="RJ285_001347"
                     /pseudo
     CDS             1..497
                     /locus_tag="RJ285_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
     gene            648..2048
                     /locus_tag="RJ285_001348"
                     /pseudo
     CDS             648..2048
                     /locus_tag="RJ285_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049860.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2202..2333
                     /locus_tag="RJ285_001349"
                     /pseudo
     CDS             2202..2333
                     /locus_tag="RJ285_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004087681.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
     gene            2660..3280
                     /locus_tag="RJ285_001350"
     CDS             2660..3280
                     /locus_tag="RJ285_001350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384107.1"
                     /translation="MGALYTEFITLGHMQNIIGFKNVNVGAEYLENTLLSKDTNVGLS
                     NTLNVGISNEVNIGQNHEEKIGNDKRVIINNNLEQDIKNDFIQRIGHNKNETIKGSYV
                     LQTNQSIKFYSKQDLSIETNEYFKAEADDSISFKAKKNCSFTADNVNTMANQESVLTA
                     QKQIVSRVGNTTITQTKDKIILQVGTTQVIIDSKGLRVKGGDLRAD"
     gene            3346..4290
                     /locus_tag="RJ285_001351"
     CDS             3346..4290
                     /locus_tag="RJ285_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDV7384108.1"
                     /translation="MKTLEDIKAMSYQEKDELEDLVLEIIDNNDLVKLKDILKDYPVK
                     ISCYELNIKDEDGDFPLFDPFNLIIRAAHACEENNNDFSILDYLFDEYGLSLKDPKYN
                     FAFHDMKHIKEANDKYILMKEVEDDPCIYQNALIYDYILSADNPNSQIIKYLVNRGAK
                     FEVHDEDTNWTPMHFWARRNNYELLELAIKGGANVDMQTFSKLRKCNNETLLFEAVSE
                     PETYRVTQLLIELGANVNFATPTTPLDDAKGSRNKKLLKDAGAMTSEQIRKKFNLPAY
                     DSSHCEIDGKTDMDLLGKYHDEYSKLLNDAIKKAKESE"
     gene            4468..4800
                     /locus_tag="RJ285_001352"
     CDS             4468..4800
                     /locus_tag="RJ285_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384109.1"
                     /translation="MLSYEYKNLVENGNLKVDAKYKVTLPPNLIAVLEYDKSEFNGVN
                     LRNFINDLEFELEHIEMELYDDPADFEGGDYYNEDSDCDEDYTVEDWVEDQVSDIKDF
                     LYALKDFK"
     gene            4797..6047
                     /locus_tag="RJ285_001353"
     CDS             4797..6047
                     /locus_tag="RJ285_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384110.1"
                     /translation="MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEF
                     KQANKDKFYNKHLENTLKAMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRL
                     CKDKSKYILHRYYQKNDLTEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPY
                     FNKYDIYFNSSLELSFNFSDESLEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKI
                     ILELENMFLNLCKGISADYAFMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSF
                     KEYIEEYTNTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENIQGILS
                     KQKDIDINFVNFIDYKDYVYKNKDDFWEFSAKENSILWEKFLSKNTLKPFPLNFDCSL
                     EEKLLYAKDEQLENILKTHKTFHG"
     gene            6466..6816
                     /locus_tag="RJ285_001354"
     CDS             6466..6816
                     /locus_tag="RJ285_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HDV7384111.1"
                     /translation="MEYDRIRWEGMGDDNKQSSIQTHHIATDKNKKFTKEFRKITKKY
                     NMELDEDWNKVKMPHRGRHPNEYHEYILEKMSKIDKIARGDKDKFIKEFEKLKEEVKN
                     NPAILHKDYYKERK"
     gene            6816..7382
                     /locus_tag="RJ285_001355"
     CDS             6816..7382
                     /locus_tag="RJ285_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384112.1"
                     /translation="MKYYKMMYNYNHNDVDNWYSCDLVDIKNNDEYALLESKPITNWQ
                     TPSFEIDKDDGNILTDLIHNDCGWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYY
                     GCKIMHVTKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEVPV
                     FVSSEFRKIVRENNLLGFSFSEVMVYEN"
BASE COUNT         3122 a          936 c         1079 g         2454 t
ORIGIN      
        1 attgcaaaaa aatatttacc atttgcacct ttactactaa gtttaagacg acctaaaaca
       61 cacattgaaa gagttttaca agtcaatttt aaacttaagg ataaattatc aattattgaa
      121 aatttacccc atcaaatttt aatttcaaat tcgcaaaaaa ataacttagg aataaagaac
      181 aatattttag gaaataattt tatattgggc gataaattta tctcttatca aaacaaaata
      241 gcgatctata taaaggatat ttcatatcaa gaagcggtta aatttatgcc aatggaacca
      301 aacacgatga tttaaaaaat agcataatgt ttttaacaaa taatgaattt tgtgttgatt
      361 tatatcttaa aatcaactat tcttcagaaa tgaagtttgt gttaggagaa gaaaatactg
      421 ccaaacttgg ttgggcaaaa attttaggta atacgcaaaa aaaatataca atagtatata
      481 tgaaactatg tgaataagct gacacaaaaa tatgtttaaa aaaatcacaa cctctcttca
      541 cccataaacc ataccctaaa ataaacttta ttttacccac tttatgctaa aataaatcac
      601 ataagcttat aggctattaa tcatcaacaa acccaaaagg atcatcaatg tcccttaatt
      661 cttacatgag tcttaatata tcaaattcta cttcaaatcc cctacccttt aaaatcacta
      721 aagccctcat caaagaaagt cttgaagagc ttttttctat agaatgtgaa ggcttttttg
      781 aaagtttaga acaagattta ttttctttaa atactttaac caatgcttca tctcatccaa
      841 gcacccctac aacttttaat tttcatccta atgttttaat cgatcaagaa gctattttaa
      901 gtatccataa tccttatgag aataatacct taaactttga taacaatgaa gtaaaaaact
      961 ataagggaat tatcacttat ataaaatatc taggtattaa tcatgaaagt gctttaaata
     1021 ttaatgatag cacttcaaat actaagcaaa tacaatacaa gcattttttt tcttttaagc
     1081 ttcaatcagt cttgataaga ctttctttaa ataaagccaa tcgtatttat actcatacta
     1141 atattataga agtgattaaa caaacccttg gtttttatca agatatctta cataaagaaa
     1201 ttgattattc taatatacat tttaattatg aagaacaaga actcatctct caatacaatg
     1261 aaagtgattt agactttatt acaagattaa gccataataa tggaatcttt ttttatgaag
     1321 atgagaacac tatttatttt tgtgatgtgt ataaaaatgt aaaaaataaa gaaattgagt
     1381 ataatcctaa tgttaataat attttaaatc aagcttgtat ttcttctatt tataaagagc
     1441 aaagcttaag aactaattct tttacacatt ctagtattaa tgccaatact cctttaaatc
     1501 ttttatcttt acactctagt aaagttcctt atgaacaaga acttaataac aaagcttgtt
     1561 ataatgaaca tttttatgag agtgaatatt cttttacaaa aagcattgat ttaaagacta
     1621 agccttctct taaagaaaaa agagccttag tattaaatga aagcttacta gcaaaaagta
     1681 atatttatca tcttaactta ggagatttta tcactttaaa ttataaggag tttaatcatc
     1741 aagaagaaat aaaaaatcaa gatgaagaaa aacaagataa agcttctttg cttaaagact
     1801 ttattattat cgctaatact caaatcttaa ttgatgatgc catcttagct aattctatta
     1861 atactaatga tcatttaaat ttaaataaat cttattctaa tactttaact ttactaaaaa
     1921 agaatattat ctttactcca agttttaaag ctaaacctaa agctcctaat agcactcaag
     1981 gtattgttat aggagagagt aaggatatag aaagtgagag gaatactatt tatactgatg
     2041 agcatggaag ggttaaggta aggattaatc tttatgccaa tcaagaagaa ttagataatg
     2101 atacttttat tgcaaatgat atagatataa attcttctaa tttatcaagc aatacttata
     2161 aatcttatca tcacactcct tttttaagag tagcttctca tatagcaagt aatcattcag
     2221 gtttttttca tactccaaga ataggagatg aagtgattat ttctttttta gatgatgata
     2281 tagataaacc ttatgtaagt ggaagtttgt ataatggggc tacaacaatg ccccaatata
     2341 attatccaag atataaaaga gaaatcgcta caaatgcatt gagttattta agcgtagttc
     2401 ctgctatgat tgataaaggt ttagatacat taaaacttca agaaaatact gattatgaat
     2461 taagctctat aaacaatcat tatcttactt tggctaattc cacagtagga gtggataaca
     2521 ccaatgcaag agtaaggaat gaaattaccc taaaaacgac aaagacaaag aagaaattta
     2581 tatcctagca caaaaagatt ataaagaaga aataggtaat aattatgagc aaaccataaa
     2641 aaataataaa acttcagaag tgggagcctt atataccgaa tttattactt taggacatat
     2701 gcaaaatatc ataggtttta aaaatgtcaa tgtaggagct gaatatttag aaaataccct
     2761 actttctaaa gatactaatg tgggcttaag taatacttta aatgtaggaa tcagcaatga
     2821 agtcaatatc ggacaaaacc acgaagaaaa gataggaaac gacaaaagag taataatcaa
     2881 taacaatcta gagcaagata tcaaaaatga ttttatccaa agaataggac ataacaaaaa
     2941 tgaaaccata aaaggttctt atgtgcttca aaccaatcaa agtataaaat tttattccaa
     3001 acaagatcta agcatagaaa caaatgagta tttcaaagct gaagctgatg attctattag
     3061 ttttaaagcc aagaaaaatt gctcttttac agctgataat gtaaatacta tggcaaatca
     3121 agaaagtgtt ttaacagcac aaaaacaaat cgtttctagg gtaggaaata caactattac
     3181 acaaacaaaa gataaaatta tactccaagt aggaacaaca caagtgatta tagatagcaa
     3241 aggtttaaga gtaaaaggag gtgatttaag agcggattaa aagcaatttt cttaaaatta
     3301 aaactaaaat cataaaaaac ccaatttaca aagaaaggaa aaacaatgaa aaccttagaa
     3361 gatatcaaag ctatgagcta tcaagaaaaa gatgaattag aagatttagt tcttgaaatt
     3421 atagataata atgatttagt taagctaaaa gatattttaa aggattatcc tgtaaaaata
     3481 tcttgttatg agcttaatat taaagatgag gatggagact ttcctttatt tgatcctttt
     3541 aatctaataa taagagctgc acatgcttgt gaagaaaata ataatgattt ttctatttta
     3601 gattatttat ttgatgagta tggattaagt ttaaaagatc ctaaatataa ctttgctttt
     3661 catgatatga aacacatcaa agaagctaat gataaatata ttttaatgaa agaagtagaa
     3721 gatgatcctt gtatttatca aaacgctcta atctatgatt atatattaag tgctgataat
     3781 ccaaattctc aaatcattaa gtatctagtc aatcgtgggg ctaaatttga agtgcatgat
     3841 gaagatacaa attggacccc tatgcatttt tgggctagac gcaataatta tgaattatta
     3901 gaattagcca ttaaaggagg agctaatgta gatatgcaaa cttttagtaa attaagaaaa
     3961 tgcaacaatg aaaccctttt atttgaagct gtaagcgaac ctgaaaccta tagggttaca
     4021 cagcttttaa ttgaacttgg agctaatgtg aattttgcta ccccaaccac ccctttagat
     4081 gatgcaaaag gatctagaaa taaaaagctt ttaaaagatg caggagcaat gacttcagaa
     4141 caaatcagaa agaaatttaa tttaccagca tatgattctt ctcattgcga aattgacgga
     4201 aaaactgata tggatttatt aggtaaatat catgatgaat attccaaact tttaaacgat
     4261 gctataaaaa aggctaaaga aagtgaatga gggaatagaa attcactttg ctaaaataaa
     4321 ttataaggaa agataatgaa aaataaaaaa ttattggatg atgaatatat acaagaagtg
     4381 tttaaatact atcttaaaaa tgataattat ttaaaagatg ctttatatgg tttaaaaaaa
     4441 tacgaacgaa gagcttttat aagtagcatt ttaagctatg aatataaaaa tttagtagaa
     4501 aatggcaatt taaaagttga tgcaaaatat aaagttacct tgccgcctaa tcttattgct
     4561 gttttagaat atgataaaag tgaatttaat ggcgtaaatc ttcgaaattt tataaatgat
     4621 ttggaatttg aattagaaca tatagaaatg gaactttatg acgatcctgc tgactttgaa
     4681 gggggagatt attataatga agatagcgat tgtgatgaag attatacagt agaagattgg
     4741 gtagaagatc aagtaagtga tattaaagac tttttatatg ctttaaaaga ttttaaatga
     4801 aacaaacatt aagctctaat cgagtaagct tttatctttt ttctactaaa acttttagtg
     4861 atgaaaaata tcttaatgct tggagcttaa aaggcgagcg tttaaatgcc aaagattggt
     4921 ttgaatttaa acaagccaat aaagacaaat tttataataa gcatttagaa aataccttaa
     4981 aagctatgca agagtttaaa gcttatttta gtgttgatca atttgaaggc ataaatctac
     5041 atggtgatga tgaatggctt gattttttgc cttcaaatta tactcaattt tataatcgtt
     5101 tatgtaagga taaaagtaaa tatattttac atcgatatta tcaaaaaaat gatttgacag
     5161 agattggtat gcttaaaaat ctttctccta attttccttt ttgggatgaa aaaggagaaa
     5221 atttttctca aaatcaaatt gatattttta tagaaaaaga taatttagca ccctacttta
     5281 ataaatatga tatttatttt aattcttcac ttgagctaag ctttaatttt agtgatgaaa
     5341 gcttagaata tttaattaac aattataatc acagaatcaa tcatactttt actccaaaaa
     5401 gtcaagatga gatacaaaaa gaattaaatt taagcaaaga agataaaatc attttagaac
     5461 ttgaaaatat gtttttaaat ctttgtaaag gcatcagtgc tgattatgct tttatggatt
     5521 tttcttattt ttttgtagga tatgatcata ctttagattc taaaaataat actttaaaat
     5581 cttatcccat taatcaagat aaattaattc ataaaagaag ttttaaagaa tatatagaag
     5641 aatacacaaa tacttacttt ttaaattatt attctaaaga gtttttaaat gaacttgaca
     5701 atcaagaatt aaacaaagat agacttaatt attatcttat taattacaac aaaattccaa
     5761 aaaacacaga agaagaaaac atacaaggca tactttctaa acaaaaagat atagatatca
     5821 attttgtaaa ttttatagat tataaagact atgtttataa aaataaagat gatttttggg
     5881 agttttcagc aaaagaaaat tctatacttt gggaaaaatt tctaagtaaa aataccctaa
     5941 aaccttttcc tttaaatttt gattgctctt tagaagaaaa gcttctttat gctaaagatg
     6001 aacaactaga aaacatactt aaaacccaca agacttttca tggctaaaaa aagaacaatc
     6061 cttattccta gaataaaaga tattaatata agtcctgata cttcttgtat gcatcctatc
     6121 ttagaagata atactttagt atgcttacat ggaggtagag ttaagttaaa agcaaaaaaa
     6181 gctaaaagaa taaaatcaga caatgttcct attatgcttg ataatgaaat acaaggagct
     6241 agtataagtg gatgtttaaa tccacctata ctaggaggac cttgtactaa agtagctatg
     6301 gtatttgctt atacttattc agatcataaa gttaataata aacattctgt attacaaatg
     6361 ggtttgatag gaatgagtat aaaaggttat cctatatttg ctatacccaa aaagaataag
     6421 attaaatttg ctttagctaa aatacaagct agtcctcttg ctaagattga gtatgatagg
     6481 ataagatggg aagggatggg agatgataac aaacaatcat caattcaaac ccatcatatt
     6541 gccactgata agaataaaaa atttactaaa gaatttcgaa aaataacaaa aaaatataac
     6601 atggaattgg atgaagactg gaataaagtt aaaatgccac atcgcggaag acatcctaat
     6661 gaatatcatg aatatattct tgaaaaaatg agtaaaattg ataaaatagc aagaggagat
     6721 aaggataaat tcataaaaga atttgaaaaa ctaaaagaag aagtcaaaaa caatcctgct
     6781 atacttcata aagattacta taaggagaga aaataatgaa atattataaa atgatgtata
     6841 actataatca taacgatgtg gataattggt actcttgtga tcttgtagat ataaaaaata
     6901 acgatgaata tgcactttta gaatccaaac ctatcacaaa ttggcaaaca cctagttttg
     6961 aaatcgacaa agatgatggt aatatactga ctgatcttat acacaatgac tgtggttggc
     7021 gtatagtctc tcctaaattt ataaatttaa tgcaagattt aatcaaagat tgtgtgcaat
     7081 atttagatgt agaaattaaa agtcaggaaa taaattatta tggttgtaaa attatgcatg
     7141 taacaaaatc acttgaggct ttagattatg aacattctgt atatacttat atgggtgata
     7201 atgatgaata tttaagtatt actaaagctg ttttaaaaaa atcaaaactt gatggaagcc
     7261 atatatttag aattaaagat gatgaagtac ctgtttttgt atcaagtgaa tttagaaaaa
     7321 tagtaagaga aaacaattta ttaggtttta gttttagtga agttatggta tatgaaaatt
     7381 gaaagactaa aagctataaa aaattttgca atttaatata aaaagatttt tagttataat
     7441 ttcattttat atttaaggaa aaatttatgg aagatttaaa acttttacaa agacgttggg
     7501 aagaagctta tgaagctatg cctaaacttt atgaaacacc agatgggtta ataataaatt
     7561 tcaccctaag tgaagataca gatactattc t
//
LOCUS       DAPIWU010000078         7407 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.078, whole genome shotgun sequence.
ACCESSION   DAPIWU010000078 DAPIWU010000000
VERSION     DAPIWU010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7407
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.078"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            115..1605
                     /locus_tag="RJ285_001356"
     CDS             115..1605
                     /locus_tag="RJ285_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7384113.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTLENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLD
                     MNSDKFEQYKAMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            1602..2990
                     /gene="ftsA"
                     /locus_tag="RJ285_001357"
     CDS             1602..2990
                     /gene="ftsA"
                     /locus_tag="RJ285_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDV7384114.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            3006..4118
                     /gene="ftsZ"
                     /locus_tag="RJ285_001358"
     CDS             3006..4118
                     /gene="ftsZ"
                     /locus_tag="RJ285_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDV7384115.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            4274..5086
                     /locus_tag="RJ285_001359"
     CDS             4274..5086
                     /locus_tag="RJ285_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HDV7384116.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDSSRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNAILFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            5115..5906
                     /gene="flgG"
                     /locus_tag="RJ285_001360"
     CDS             5115..5906
                     /gene="flgG"
                     /locus_tag="RJ285_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HDV7384117.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(5972..7402)
                     /gene="glnA"
                     /locus_tag="RJ285_001361"
     CDS             complement(5972..7402)
                     /gene="glnA"
                     /locus_tag="RJ285_001361"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDV7384118.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKNGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         2646 a         1009 c         1368 g         2384 t
ORIGIN      
        1 gtaaaaatca taaaatttaa agaacaaata ttttttggta aaaattttat aattaaactc
       61 cacttaaaca cttctacgat acaatatctg gtttaaattt aatcaaggaa tgatatgctt
      121 acttggatgc aacatcacaa aaaatatctt gttgttacta tatgggttag tactatagct
      181 tttgttggcg ctggcttttt aggttggggt gcttatgatt ttaatctcaa tagaagttcg
      241 agtgttgcaa ctgtaggaaa tgaaaagata ggttttagcg aatttgatac tagatataga
      301 caaattttaa gttattataa tcaaattagc aatggtgctt taactctaga aaatgctgag
      361 caactaggca ttaaaaatat agctttaagc tctcttgttg aagataagct tttgttaaat
      421 tttgccaaag atttgggtat tggtgtaaac gagaatgaaa ttttacaaaa acttgcaaat
      481 actagagaat ttcaagatcc tacaggggat tttaacaaaa caatttatta tgaactttta
      541 aatgccaata atttagctcc aaaagattat gaaacacaac ttgcaaatga agtaattacc
      601 gataaactta atcaaatttt taatattcct agcaaagatg aggaattaaa aatgttagct
      661 tctagttatt tcatgcaaga tgctttaagt attgcaaaaa ttgattatga caaaaaaaat
      721 attaagatta acgaagagga tttaaaaaag ctttggaatg aacataaaga agattataaa
      781 actaaaaaaa tatatgaaat ttcaacttat tttttgccag ttagcaatga gaaaattgac
      841 gacaaagaat tagaaaaatt ttataatcaa gatgaaaata aactaaaata taaagatttt
      901 gcaggtaaag tgatggattt tcagtctgct aaaaatgaag ttgctaaaga ttacgcctta
      961 atgcaactaa agaatgtggc taatgctaaa tttttagatt taaaaaatgg gaaagataat
     1021 tttcaaaaag atcaaaatat tagtgaatct gatgtttatt atccaattga tcttttgaat
     1081 aaagctaaaa atggagatgt tttacggcca gcaccttata ataacggata tatcatagtt
     1141 aaactaaata aagtagatcc tataagaaat aaaacttttg aagaagctag agaagaagtt
     1201 ttacctatgt atttaagcga acaagctaga aaaaatttag aagaaaaagc taaaaatagt
     1261 ttagtaaatt ttaaaggcga tgatataggc tttgtaagtc gagatagttc tcgcgagagt
     1321 gtaaaggtta gcgataaaat attaaacgat tctgaatttg cttatttttt aatgaatgta
     1381 tttaatactg atcaaaatag ttcttatgtg gtcattaatg acaataaagc aatattatat
     1441 aaaataaata aacaaaaatt agatatgaac tccgataaat ttgaacaata caaagctatg
     1501 cttgaacaaa atttgcaaaa tttaaaagca aatgagctta agcaagaact tgttgatgaa
     1561 cttaaaaaga tatatccgat aaaaatttat tataaaggga attgattttg aatatattag
     1621 gaattgactt aggctcaacc cagacttgtg ccattattgc tcaaaaagat gaagatggat
     1681 taaaaattat tggtttttcc aagtcgaaaa ccaacggggt taaaaaaggt gccattacca
     1741 atatagagct tgcttctaaa tctattgaag aggctgttag aagtgctgag atgatgagcg
     1801 gagttcatta tgatagggtt gtggtgtcta tatcaggtgc ttatactaaa agcgttgata
     1861 gcataggtgt tgttaatatt ccaaatcatg aaataggcat taaagaaatt catcgtgctg
     1921 taagtacagc taagcatact gccaatctac caagtggtta tgaaattatc catgttttgc
     1981 cttataattt taaggttaat gatcttgaac atgttgatga tcctttggga atgagtggta
     2041 atcgtttaga agtttcaacc catatagtga tttcacaaga atctcatatt aaaaatctta
     2101 agaaagcagt tgaattagct gatttaagag tggataatat agttctttca ggatatgctt
     2161 cagctatagc ttgtttagat gatagcgaaa aggaattagg tgctgttttg attgatatgg
     2221 gtggagcgat ttgtgatatg gttgttcata ctggaaattc aattagatat aatgattgtt
     2281 tgcaaattgg ctcgattaat atcacccaag atttatcaat ggcattgcat acacctttaa
     2341 aagaagcaga aaaaatcaag cttaattatg cagctctttc acaacagcct aataccctta
     2401 tacaaattcc ttcaatgggt gatgaaagaa aagttaatga agtttctttg gatattattt
     2461 caaacgtaat ttatgcaaga gcggaagaaa ctttgatgat tttggcaaaa atcttaagtg
     2521 ataatcgtta tgccaatgct ataggtggcg gagttgtttt aacaggtgga atgactaagt
     2581 tagcaggtat tgatgagcta gctcctgcaa catttgataa tcgctcagtt agactggcta
     2641 ctgcaagaaa agatttgatt actggtttta gtgaaatttt taatgatcct gaaaatactt
     2701 gtgctatagg actttgttta tatggagcgg gatattttac gccttatgaa cttgattcta
     2761 atgaaaaatt aagatataaa ggggaaattg aaaattttaa tcgtcaaatt aaacaagata
     2821 ttgttttgca aaaagataca gaaagtgaaa taaaatctga tttttttgat gaaaatttgc
     2881 aagaaaatga tacaattgca atacaagaac aattagattt taaagagcca aaagaaaaaa
     2941 aacctagtgt tttttcaaat atctggcata aaattatgaa tcaattttaa caaggagaaa
     3001 tttttatgag tgaattttta gtagaagaaa tgcaacataa taaaggtgca aaaattaagg
     3061 ttataggctg cggtggcggt ggcggtaata tgattaacca tatggttaaa atgggattaa
     3121 atgatcttga tttaattgca gcgaatactg atgcacaagc tatttcaatt tcattagcaa
     3181 aaactaaaat tcaacttggc gagaaaaaaa ctaaaggttt gggcgctggt atgcttcctg
     3241 aagtaggtgc agaaagtgct agagaaagtt ttgaagaaat aaaagcaagt cttagtcaaa
     3301 gtgatattgt atttattgct tcaggttttg gtggaggtac tggaacgggt gccactccag
     3361 ttattgcaca agcagctaaa gagattggag ctttaactgt ttctgttgta actatgcctt
     3421 ttgcattcga aggaaaacaa agaaaaaaac ttgctgaaag cggtctcctt gagcttaaaa
     3481 aagaaagtga ttctattctt gtaattcaaa atgaaaaatt attgagcatt attgataaaa
     3541 aagcaggcat taaagatgct tttaggttgg ttgatgatat tttagctcgt gctgtaaaag
     3601 gtatggtgtc tatcttactt gataatggag atattaatgt tgactttgcg gatgtaagaa
     3661 ccatcatgag tcatcgcgga ctcgcgctta tgggtgttgg tagtgctagc ggtgaaaatg
     3721 ctatagaaga ggctctttca aacgctatag aatctccttt gcttgatgga atggatatta
     3781 aaggtgccaa gggagttatt ttacatttta aaacaagttc taattgctct ttgtttgaaa
     3841 tttcggcagc agcaaatagt atacaagaaa ttgttgatga aaatgctaag attatttttg
     3901 gttctaccac agatgatagc atggaagata gagttgaagt aactattatt gcgacagggt
     3961 ttgaagataa agatacagta gctaaaaaat ctaccgaaga agctcaagct tctaagaaaa
     4021 atccttattt aagtcttaaa aaggtaagcg gtggttacga tgaagagata atggcgcaaa
     4081 ttgaaacacc aactttcttg cgtcgtcaaa tggattaaaa ttgattttta aagcaagatt
     4141 gagtcaaatc ttgcttttta tagtttaaaa ttctctccta ataatctttc aaatatttat
     4201 ttttctttgt ttttaaaagt tggaacactc tttgctttta tagttataaa atcttaaatt
     4261 tataggtgaa aatatgcaaa atggatatta tcaagcaact ggcggaatgg taactcagtt
     4321 taataaactt gatgtgatta ctaataatct tgccaatatc aatacaagtg gatataaaag
     4381 agatgatgtg gttattgcag attttaaaag gatttttaaa gaaactcagg atgagttgcc
     4441 tatagaaaat cacacaagag attcatctcg ttttgtaaat actacaatag atggcatccc
     4501 gcaagtttct caagaatata cggattttag cctaggttct ttaaaggcca caaacaatcc
     4561 tttggatttg gcaatgacta gagaagatgc tttttatttg gttcagacca aagatggaga
     4621 agtaagatta actaaagatg gaaattttca acttgatgat gagggttatt tggtaaataa
     4681 gcaaggatac aaggtattaa gtagtgatta ttttaataat cctcagaatg ctggcatacg
     4741 cattcctaat ggtgctgttc aaattagcgt tgataaaaac ggaagcattg aagttgatgg
     4801 agctcaaaat gcaatattat ttgtagcaca agtagatgat ataagagctt tgcaaaaaga
     4861 tggggataat gtctataaaa tagatgatct aacccgtatt agagatttga aaaactccaa
     4921 tgctattcgc caaggttttt ctcagggatc aaatgttaat ccagttactg aaatggtagg
     4981 actgattgaa gcaaacagaa tggtagaaat gtatcaaaaa gttatgacag ctcatatgga
     5041 tgacttaaat caagaagcta tcaataagct tgcagctgtt aaataattta aaataaaata
     5101 aaaaaggatt caagatgatg agatcacttc atactgctgc tacaggaatg gtagcgcagc
     5161 aaacacaaat tgatgttact tcaaataaca tcgccaatgt taatacagca ggttttaaga
     5221 aaagtcgtgc agaatttgct gatcttatgt atcaagttat gaagtatgca ggaacttcaa
     5281 cttcagctac tactctttct ccttcgggta tagaagtggg tgtgggtgtt cgtccaacag
     5341 cggtaactaa agtttttact gaaggaaatt taaaatcaac aagtactgat ggtcttgata
     5401 tggctattgc aggtaatggg ttttttcaaa tacaacttcc tgatggcact ataggatata
     5461 ctagaaatgg gcaatttaca aaagataatg aaggtaatat tgtaaattca gatggctata
     5521 gacttttacc tgaaatgaca atacctgaag gcgcaacagc aattaatgtt gctacagatg
     5581 gaaccgtttc tgtaatgcta ccaggggagc aacaagaaac tcaaattggc caagtggagc
     5641 tagttcagtt tataaatcca gcgggtcttc attctatggg tgataatctt tatctcgaaa
     5701 caggagcaag tggtgcacct gttgcgggta tagcaggaca agatgggctt ggaacaataa
     5761 gacatggatt tatagaactt agtaatgttc agcttgttga agaaatgaca gatcttatca
     5821 caggacaaag agcttatgaa gcgggttcta aggccattac aacaagtgat gatatgctag
     5881 gaattgtaaa tcagcttaag cgatagttga tataaaataa ataattttta attctttttt
     5941 gtttaatggc gtgttaaacg ccattaaatt tttagcaaga gtagcaagtt ttaaattcat
     6001 aagcagttgg acgagcttct actggccaaa cttgtgtttc aaattttaaa tgctgatagt
     6061 catcgataaa aatatcgctc attacaggtt ttaaataaga attatgtcgg attaaagctt
     6121 ctaaacttcc tcttagagta tgtggtaatt gctctatccc tttttcacgt atttcatcca
     6181 aagtaagatc aaataaattt tcatccatag gacccacagg aatggtttta tttttgattc
     6241 catcaagacc tgccattaaa agactaacaa aagctaaata aggattagca gtgctatcag
     6301 ggaagcgaat ttctatacga gctgaatttt tgcctatgcc ataaggaacg cgacaacttg
     6361 ctgatctgtt ttgacaagaa taagttaaaa tacaaggagc ttcaaagcca ggaactattc
     6421 ttttgtaaga gttggaactt ggatttgtaa aagctgcaac acttctagca ttttttaaaa
     6481 ttccacctat ataatttata gcagtttgac taagtccact gtatccatct ttatcgtaaa
     6541 ataaatttac tccatttttc cataagctca tatgaacatg cataccattg ccattatctc
     6601 cgtataaagg ttttggcata aaagtggcag ttttgccatt taaatgagct accattttta
     6661 caacatattt ataaatttga acattgtcag ctgcttctac aagcgtgcca aaatttactc
     6721 ctatttcagc ttgtccttgt gcaacttcat gatgatgaac aaaagtttta agacctactt
     6781 tttcaagggt ttgaaccatt tcagaacgaa tatctactaa agaatcaatt ggctgaactg
     6841 gaaaatatcc acctttgttt cttggcctgt gtccagtatt gtagctatcg gtaaattctc
     6901 tatcatcatt ccactctcct tcttcggtat caacttcata cttagaacaa tgagtagtat
     6961 caactatttt tacactatca aaaacaaaga attcattttc tggtccaaag taagcagtat
     7021 cagctatgcc actattttta aggtgttcca ttgctttttt tgctatgctt cttggacatt
     7081 tttcatacat ttgtcctttg taaatatcat acacatcaca aaatactatg atagtaggat
     7141 cagccgtaaa aggatctaaa aaagcacttt gagcatcagg ttttaaaatc atatctgatt
     7201 tttctatagg ttgccatcca tgaattgagc ttccatcaaa tggaatgcca gtttgaaatg
     7261 tttcttcatt gattgcatga agattatagg taatatgatg ccaagttcct atcatatctg
     7321 taaaacgaaa atcaacaaaa agcacttcat tttgtttgca aaatttgaaa aaatcatcta
     7381 tattattaac aaattttccc atatttt
//
LOCUS       DAPIWU010000079         7386 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.079, whole genome shotgun sequence.
ACCESSION   DAPIWU010000079 DAPIWU010000000
VERSION     DAPIWU010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7386
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.079"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(19..650)
                     /locus_tag="RJ285_001362"
                     /pseudo
     CDS             complement(19..650)
                     /locus_tag="RJ285_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655617.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
     gene            complement(678..1151)
                     /gene="pseH"
                     /locus_tag="RJ285_001363"
     CDS             complement(678..1151)
                     /gene="pseH"
                     /locus_tag="RJ285_001363"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HDV7384119.1"
                     /translation="MIGLKDFTHLNGNEILLIWQWRNDEKISQFMKTKYIDFQEHLNF
                     ITSLKKDQSKKYFLVFKDDGAIGVIDFINIMQDSCEFGLYAKPDLKGIGQILIQEIKK
                     YAFENLKIKELKACVFKQNKKALDLYLKNGFYIKNEDKNMFYVEFMGGGYSQIST"
     gene            complement(1148..1969)
                     /gene="pseG"
                     /locus_tag="RJ285_001364"
     CDS             complement(1148..1969)
                     /gene="pseG"
                     /locus_tag="RJ285_001364"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HDV7384120.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELDSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIRDEFYKESKIEREKIWDY
                     FICIGGTDIKNLSMQIASDLPKNKKIAIATSSSNKNLKKLEKFIQNHENVKLFIDEEI
                     SKLMNESTKLIISASSLVNEALLLKANFKAVCVAKNQEKLANWLVQKGYEVEYRL"
     gene            complement(1953..2651)
                     /gene="pseF"
                     /locus_tag="RJ285_001365"
     CDS             complement(1953..2651)
                     /gene="pseF"
                     /locus_tag="RJ285_001365"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HDV7384121.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFD
                     EIVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAAVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKNILKQAYEKFIQNESKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            2743..3954
                     /locus_tag="RJ285_001366"
     CDS             2743..3954
                     /locus_tag="RJ285_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7384122.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     INDILKNINLGHLSVNKDNFEQIIPLIEQKVNEMKQAGLVDENQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINVLKDLVKKFPNFKNLPKIYGGGSYGGYLSLLIAKIAPWHVDGVI
                     DNSGVCLPFLAHILGRDMNQGEFVFEGDNNRIYCFVQKYWTRNINSSYYFGDENYLIR
                     AVLNSNHLKIQASMNNNTIFISYHSMQDMGAPVQNKIELYKCYQELGYDATLYLVKDE
                     NDIDGRFIKSLEHGLRMTDKALFRKELPLMLEKLQGRKFDMSKNSITYPCKDKQFIFK
                     DKDDKFELEIV"
     gene            complement(4361..5287)
                     /locus_tag="RJ285_001367"
     CDS             complement(4361..5287)
                     /locus_tag="RJ285_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HDV7384123.1"
                     /translation="MNLKLNSHNIKAISIVLPKNPHTLEKELQECNLNQKKYELLKQN
                     TGINHHFISPNNIYASDLASKALEKLFRENLLLKDELDVLLVYSFSPDFLAPALSSLI
                     HKNLGLSEKTLCFDNIAFCPGFLQGLMQAFSLLDNENIKKIAFICVSVKSKKIPKKDK
                     ITYLSNSDSASVILLEKSNTKEKAFFSQKIFSKLATEETFPLKCFKEANDFIDMDKNL
                     TFSHLNENFPRFFDDFFDNFKLDKSKIGEFFFGSANNFIKTKLLELLNFKEIKNDETL
                     KNYGDVTINKLAFDLANYEWRKGGGHKTSFYG"
     gene            5388..6459
                     /locus_tag="RJ285_001368"
                     /pseudo
     CDS             5388..6459
                     /locus_tag="RJ285_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
     gene            complement(6456..6683)
                     /locus_tag="RJ285_001369"
     CDS             complement(6456..6683)
                     /locus_tag="RJ285_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7384124.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLELAMKD"
     gene            complement(6685..7386)
                     /locus_tag="RJ285_001370"
                     /pseudo
     CDS             complement(6685..7386)
                     /locus_tag="RJ285_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049948.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="formyl transferase"
BASE COUNT         2515 a         1008 c         1110 g         2753 t
ORIGIN      
        1 tactaattat ttagaccttt atctatctat ggaatctgga taaattttga gtataaattt
       61 tttaccatct ttgtaaaaaa atgctggaaa atcttcattg ctagctatgc gtaagagatt
      121 aaattgttca tttaaacttt tatttatatc aagctcgcta tcttttggac ttcttttagg
      181 ataaaaactt tctttgccca cttgtttttt gcttgtatat cgggataaag ttctaaaaat
      241 tctaaacaca tatctagagt aaaccgagct tgtttctctc ttagctcttc atataattct
      301 aagccattta atttaaggtt tttttgtaaa taaatatcgc cattatcggc tttatcgtct
      361 gcttcaaaaa gcgaaaaggc gatttcattt ttgccttcta tgacttgatg aaaaagtgga
      421 gcccagcctt ttccttgggg taaatttgaa gcatggatga cgatattgtg tttgttgtgt
      481 tttagaaaat ttttatctat gattttatga taagaaagta taaatactat atcaaaatta
      541 aaaatctctg tatgattgta aaaaagcttg gaatttttga tttgctggtt aagttcttta
      601 gcataaggga taaaccattg attaggcgag gtaagtatgg ctattttcat actgctagcc
      661 tttttataat aagaagttta ggttgaaatt tgactatacc ccccccccat aaattctaca
      721 taaaacatat tcttatcctc atttttaata taaaaaccat tttttaaata taaatctaaa
      781 gcctttttat tttgcttaaa aacgcaagct tttaattctt ttatttttaa attttcaaag
      841 gcgtattttt tgatttcctg tattaaaatt tgccctatgc cttttaaatc aggctttgca
      901 taaagtccaa attcgcaaga atcttgcatt atattgataa aatcaatcac gccaatagcc
      961 ccatcatctt taaaaaccaa aaaatatttt ttactttgat cttttttcaa gctagtaatg
     1021 aaatttaaat gctcttgaaa atcgatatat tttgtcttca taaactggct tattttttca
     1081 tcattgcgcc attgccatat aagcaaaatt tcgtttccat ttaaatgagt gaaatctttt
     1141 aagcctatca aagtctatac tccacttcat agcctttttg aactagccaa ttggctagtt
     1201 tttcttgatt tttagcgaca caaacggctt taaaattagc ctttaaaagc aaagcttcat
     1261 tgactaaaga actagcactg atgataagct ttgtgctttc attcattaat tttgaaattt
     1321 cttcatcgat aaagagcttt acattttcat gattttggat gaatttttca agttttttga
     1381 gatttttatt ggatgagctt gtagcgattg caattttttt atttttaggc aaatcagagg
     1441 caatttgcat ggaaagattt ttgatatctg tgccacctat gcaaatgaaa taatcccaaa
     1501 ttttctctct ttctatcttg ctttctttat aaaattcatc tctaattaaa gcataagaaa
     1561 acccacatct tacttcgcat ttaaaaggca ctaaaccttc ataatcactt gcttttgcat
     1621 aggcattgac attgagtaaa atatcacaat gatgaggctt tatttcatca tcaaagctta
     1681 gaattttcac ccctgtttca agcttgatca gtttttcatc atctacgctg atgccatagt
     1741 gatcaatgat aagaagttca aatttttctt ctttgatgag attgataagt tcgtaaatgc
     1801 tttcactatc aagctcataa acaggataag gaatttcatc gatcaaagag ccttctaaag
     1861 gcaaacaagc aaaacttaca tcgctatatt gtttagctaa gactagatca cgtttaatgt
     1921 gtccaaagcc tatttgactg gagctatcgc ttctaaaaag cactttcatg atttacctta
     1981 taaagtattt ttgcaaattc taaatcttgt atggtatcta tatcgcaaac taaatttctt
     2041 ggcaatacaa atacactaga atgaggttta aatataaaat cttcttcaag ccaagcttta
     2101 cttgtgccaa aataaaaagc tcctgcatcg tgataagctt ttgttaagtc ttgtgaacga
     2161 cttttataat gtttttcatc aaacatataa acttgattat tctcatttag ataaaaagcc
     2221 ctttgtatag gatactcaaa ctcagtggcg gcaaataaaa acttgctttc attttgtata
     2281 aatttttcat aagcttgttt taaaatgttt ttatttaaaa gcggagcagt agcataaaga
     2341 caacagacat gatcataaat ttgattttgg ctttgtaaaa tttctatggc attttgcact
     2401 gcagcagtgc ttgaagcata atcatcgctt aaatttttat cacgcacaaa tggagctttt
     2461 gcaccgtatt ttaaggctac ttctatgatt tcttcatcgt cgcttgaaag tactatttca
     2521 tcaaaaatac ctgaatttaa agcattttct atgctataag cgattaaagg tttacctaga
     2581 aaatcaatga tattttttct aggaattctt tttgatccac cacgagcagg gattatgcaa
     2641 agatttttca tagttaagcc ttgttttttg tgttttattt tactaaaatt taagtataat
     2701 tgtctttaaa atacaataaa ataatgcaaa tggggtggaa taatgctcat aaatcaaacc
     2761 tttgaaattg attcttgtga tgatgtagaa ttaaatataa aaagaactag caaacttgaa
     2821 taccgcatta gctatgatga tgaaaaagat atcaaagcca tagtttttat agtgggtggt
     2881 tttggagcta atgcaaatat ttctttttta gattttgata gggaatatat tgctaaaaat
     2941 tttgatgttg tagtggtaca tgttttttat cattgttttt gtgcaagaca aagtattgat
     3001 caaaagtata atccaaagct tattcccaat caagatgatt tagagcgtat caatgatatt
     3061 ttaaaaaata ttaatttagg acatttatcg gttaataaag ataattttga acaaattatt
     3121 cctcttatag agcaaaaagt taatgaaatg aaacaagcag gtttggttga tgaaaatcaa
     3181 aaaatagaac tttcttgtga ttttatccca cctaatggag attatcaaaa ctatggcatt
     3241 atggcagcta ttgatcatat caatgtttta aaagatcttg taaaaaaatt tccaaatttt
     3301 aaaaaccttc caaagattta tgggggagga tcttatggag gatatttatc tttactgata
     3361 gccaagatag ctccttggca tgtagatggt gtgattgata attcgggagt ttgcttgcca
     3421 tttttagcac atattttggg aagagatatg aatcaaggag aatttgtttt tgaaggagat
     3481 aataatagaa tttattgttt tgtgcaaaaa tattggacta gaaatataaa ttcttcttat
     3541 tattttggtg atgaaaatta tttaattaga gctgttttaa actcaaatca tctcaaaatt
     3601 caagcaagta tgaacaataa tactatcttt ataagctatc acagcatgca agatatgggc
     3661 gctccagtgc aaaataaaat agaactttat aagtgttatc aggaattagg atatgatgcg
     3721 actttgtatt tggtaaaaga tgaaaatgat atagatggta gatttataaa aagtctagag
     3781 cacggtctta gaatgactga taaagcttta tttagaaaag aacttccttt gatgcttgaa
     3841 aaactacaag gaagaaaatt tgatatgagt aaaaattcta tcacttatcc ttgcaaagac
     3901 aagcaattta tttttaaaga taaagatgat aaatttgagc ttgaaattgt ttaagattat
     3961 cgttagtaaa gttaagaaag gattgctagg gaggggcttt gtagatggat atttccttgc
     4021 ctaatataaa aattaaattt atgatttttt taaaaaaagt gaaatatttt tgtataatga
     4081 tttgtttaag tggttaattt ctcttggtga aaaaggtgct accaataata gaaaaagact
     4141 ttaaaataat tttctgttga agatggcaaa tgagttgctt gagttgataa ataactctaa
     4201 tttttccacc gcattgtttt agcctatgct taaataaaat ctacgcttga aacatagtat
     4261 attttttcaa gtattaaaat caataatttc gataaagttt ttaattttgc taaaatcaat
     4321 tttcaaactc atggcattaa aggtaattcc tgtgccaaaa ctagccataa aaacttgttt
     4381 tatgcccccc ccccttcctc cattcatagt ttgccaaatc aaaggctaat ttatttatcg
     4441 taacatcgcc ataatttttt aaagtttcat catttttaat ttctttgaaa tttaagagtt
     4501 ctaataattt agtttttata aaattatttg cacttccaaa gaaaaattcg cctattttgc
     4561 ttttatcaag tttaaaatta tcaaaaaaat catcaaaaaa tcgaggaaaa ttttcattta
     4621 agtgagaaaa tgtgagattt ttgtccatat cgataaaatc atttgcttct ttaaagcatt
     4681 ttagaggaaa agtttcttct gtggctaatt tggaaaagat tttttgcgag aaaaaagctt
     4741 tttcttttgt attagatttt tcaagcaaaa taacactagc actgtcgcta ttactaaggt
     4801 aggtgatttt atcttttttg ggtatttttt tactttttac acttacgcaa atgaaagcta
     4861 tttttttgat attttcatta tctagtaaag aaaaagcttg cattaggcct tgtaaaaatc
     4921 ctgggcaaaa agcaatatta tcaaaacaca gagttttttc acttaaacca agatttttat
     4981 ggattaaact tgaaagtgca ggggctagaa aatctggtga aaaactataa actaaaagta
     5041 catcaagctc atcttttaaa agcaaatttt ctctaaaaag cttttctagt gctttgcttg
     5101 ctaaatcact tgcatagata ttattagggc ttatgaaatg atgatttata ccggtatttt
     5161 gctttaaaag ttcgtatttt ttctggttta aattgcattc ttgtaattct ttttctaagg
     5221 tatgtggatt tttgggtaaa actatactaa tagccttaat attgtgtgag tttaatttta
     5281 aattcatttt tacttctttc tagtatttaa tagataaatt gtaacttatg aatgcttaaa
     5341 atttaagcac aaacggagta taattttttg taaagaaagg atataaaatg acagcatatt
     5401 tacatatagg aactactaat acaggaaatc aagaaaaaca aggcttcttg atgcaaaacg
     5461 aagaaaggct tttaaaaaaa aggctatatt tatccaaaaa gccttagagt ggcaaatagg
     5521 cattgggctt tggtagatat ggttttagaa ctagttcaaa aagaagatat tttgcaaaaa
     5581 agagagtatt ttaagtcata tcacaaatga aagacttctt agagctatag aaaattttaa
     5641 aagcgaaagt gctttacata aagataaaaa tttatttttt cagctgaggg tatagtttgg
     5701 gatttttcta ccaaaaaaca tgtagaaatt ttagaaaaga ttatgagaga gttaggtttt
     5761 actcaaattt atattattgt gtattttaga gatactttgg gttatttaaa ctcacattgt
     5821 tctcaagatc ataaaaacaa tatggggtat tattctgctg attttgctcc gcaagatcat
     5881 cctagaaaat atatttttga ctatgaatgg atttgcaaaa ctcatgctga ggtatttgga
     5941 gaagaaaatt tgatagtaag acttctaagg gaggattatg taggagggac tttacttaag
     6001 gattttgttt atcatttagg acttgaatgg gatgagagtt ttgttttaaa acaaaccaaa
     6061 aatgaaagtt ttaatctttt aggaatggag cttatgtcaa gattaaatca aaaagattta
     6121 aagcaggata atcttaattc tttgcttttt atggcaagaa gaaaatttga aggcagcaaa
     6181 gaaaaaagat taaaatttgc agtgcaaaaa gatattgcta aagcttatgt ggattatttt
     6241 gcttcttcac ttgaatgggt aaaaaacaaa tatttcccgc ataaaaattc tctttttact
     6301 cctgtgaatt gggaagaata tgaacaaaat tatactttaa cccatatgct aagtaaagat
     6361 tgggatgatg tggcggattt tatagcacaa attattgttt ctaaaaatga aatcatcagt
     6421 tctttaaaag aacagcttga acttgcaagg aaagattagt ctttcattgc aagttcaagc
     6481 atttttttga tattttcaaa gctttcaaaa ttttcaggtg tgataaattc tgcttttaag
     6541 ggttttttat aaaatttttc tatttcggca accaaagcca tgatatcgat actatcgata
     6601 aaatcttcac ttactagatt ttccatactc tcattgatat ctgttctttc tatattgata
     6661 aaaaattgtt tgatttcttg cattttattc ctttgtgatt tttaaaatga cattatcgct
     6721 taaatttaaa attaaatcaa gctcattgat ttcataaaat aaaatttctc tttcttcacc
     6781 taatatttct aatctagctt taggaactcc gcttaaggca ccgcagtcca tagctcttaa
     6841 aaagcgagaa attttttctt tattccaagt aagatctaaa taaccattat ttggtaaaga
     6901 taattttttg tgataccccc cgctgaaatt tgcattttaa aagctttatt ttttaaaatt
     6961 tctaaagctt ctctaaataa agttagagca agtttgtgtt gagcgtttaa aagacttaaa
     7021 gcagtacaat tattatcaag ttttatttct ttttgaacta aaatatcacc tgtatctata
     7081 ctttctttaa ccatatgcca agtaatacct gtttttttat cgttttccca tatactccaa
     7141 atatgtgcat tacatcctct gtgaaaaggt aataatgcgt tgtggtaatt aataatagta
     7201 tttttttgaa tacattcttt tttgaaaata taaaaattat tagcactaat aataaggcaa
     7261 tttttaagat ttttaaagaa atcatctaaa ttttctatat tttttacaaa atttacttct
     7321 tgtctgaaaa aatcattagc tattttttgg cattctttgg ctactttgcc tgtgcctatg
     7381 atgtaa
//
LOCUS       DAPIWU010000080         7340 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.080, whole genome shotgun sequence.
ACCESSION   DAPIWU010000080 DAPIWU010000000
VERSION     DAPIWU010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7340
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.080"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(34..1284)
                     /locus_tag="RJ285_001371"
     CDS             complement(34..1284)
                     /locus_tag="RJ285_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HDV7384125.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(1284..2012)
                     /gene="lptB"
                     /locus_tag="RJ285_001372"
     CDS             complement(1284..2012)
                     /gene="lptB"
                     /locus_tag="RJ285_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDV7384126.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(2005..2412)
                     /gene="tsaE"
                     /locus_tag="RJ285_001373"
     CDS             complement(2005..2412)
                     /gene="tsaE"
                     /locus_tag="RJ285_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDV7384127.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSIMQRYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(2409..2654)
                     /locus_tag="RJ285_001374"
     CDS             complement(2409..2654)
                     /locus_tag="RJ285_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HDV7384128.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            2809..4029
                     /locus_tag="RJ285_001375"
     CDS             2809..4029
                     /locus_tag="RJ285_001375"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDV7384129.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESSNDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4042..4485
                     /locus_tag="RJ285_001376"
     CDS             4042..4485
                     /locus_tag="RJ285_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDV7384130.1"
                     /translation="MKVLLIKDVKAFGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGVHEVSVKLGHAIHAKFNINIKAE"
     gene            4485..5027
                     /gene="hslV"
                     /locus_tag="RJ285_001377"
     CDS             4485..5027
                     /gene="hslV"
                     /locus_tag="RJ285_001377"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDV7384131.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            5024..6343
                     /gene="hslU"
                     /locus_tag="RJ285_001378"
     CDS             5024..6343
                     /gene="hslU"
                     /locus_tag="RJ285_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HDV7384132.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESAIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELDFNDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            6340..7215
                     /gene="era"
                     /locus_tag="RJ285_001379"
     CDS             6340..7215
                     /gene="era"
                     /locus_tag="RJ285_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDV7384133.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESSARLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIITLNKVDLTDNTTLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKEIYRDFILESIYENLSDELPYSSEVLIHRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
BASE COUNT         2710 a         1232 c         1165 g         2233 t
ORIGIN      
        1 aaagtgtaat gggtttgata gattgataga attttatcct tcaagttcat ataatttttt
       61 tctatctgta gagcttgcta tattaagatg tttgcgatat tttgtaatag ttcttcgccc
      121 tatatctact ttaaattctt ctttgattaa ttctaaaatt ttactatcgc ttaaaggttt
      181 attgcgatct tcattcttta ctaaatttgc cacaaattct ttaacaccta catttgaagt
      241 ctctccctct tcatcaagag caaaagcaaa aaaatcacgc aaagggataa gtcctctttc
      301 acaacttaaa tatttatttg ccacagctct tgatatagtc gaagcattgc gttctaaatc
      361 aagtgctaaa tccttaaaag tcataggttt tatctctttt cccatgaaaa aatcatattg
      421 atattctact atcataagcc ctattttata aagagtagct tttctcatcg ctaaagcatc
      481 aactaaattt tttgcttctt tgatgtaatg acttaaaaaa tcatgctcta aaccatcagt
      541 ttggattgaa atttcaggat aataatcatc attgattttt actttaattt caccattttc
      601 tttataaaca aaaatatcag gaacaattat acgagaatct tcaaaatatt ccaaaaaagg
      661 gggagtgcta aagcgcttaa gtacagctaa tgcttcttta tataaaggct ctttggtata
      721 gttttgtata ttttcaaaat ccataatcaa cattctacaa aactcatcaa tatcttcatc
      781 taactccata ttttcaagag caaataaaaa tgcttcttta taatctttag ctcccactcc
      841 tacaggatct aaaaatttaa atcttgctct tactcgctca atttcttcca aagaatactc
      901 ttttaaaaat tcttcatcgt attcaaaata tccttcctca tttaagcatt ctataatttt
      961 ttttgcaagt tcttgagatt tgtttgtagg aaacaaagga ggaagaatct gttcatttaa
     1021 aagctcataa acactttttt tggcaagtcc tttactatcc acaaaagccg aatttacatt
     1081 atgtttataa aatgaatcaa aataattctt acccttatca tgagtttgta tcgaatcttg
     1141 aacatttaag aaaggattat cctcagcaaa tttatctaaa ttttctttta aatcctctat
     1201 atttgcttgt aaaatcggca accaagagcg taaagtttga gaaattttag tcttgggtgc
     1261 ttgggtgatt ttttgcttta acatcaatca aggagtttaa actccgctcc taaataatac
     1321 tttttcacgt ctttattggt tgcaatttca tcagcattcc cactagcaag caaagagccc
     1381 gatcttataa cataagctct atcacaaata gccaaagtct cacgcacatt atgatcggta
     1441 attaaaaccc caatccccaa tcttttaagc tctttaatta aagtttgaat ttcagccact
     1501 gctataggat caacacctgc aaaaggctca tcaagaagca aaaacttagg ttcacacatc
     1561 aagcttctag cgatctcaca acgccttctt tcacctccac ttaaacttaa acctttcctt
     1621 aaacgaatag gctctatact taagagttca agcatttgct caactttatc atgtaaaatt
     1681 tttttatctt tataaaaaat ctgagccgct aaaagcaggt tatcttctac acttaaatcc
     1741 ttaaaaatac tactttcttg aggtaaataa cctatccctg atctagctct tttgtttaaa
     1801 ggatcttttg tcacatctaa accgtctaaa agaacttttc cactacttgg ggaaataagt
     1861 ccacatatca tataaaaagt tgtcgttttt cctgcaccat ttggccctaa aagtcctaca
     1921 acttctccgc tattaacctc taaagaaatt ccatgtataa tcttagtttt tttaataatt
     1981 ttttctaaat ttacaatttc taatttactc ataaatttca tactttcttt tgtcatcttt
     2041 aatgctaatt ttaatctgga tagtagaaat tccaaatttc attaaagttt ttttcaaatt
     2101 ttcaccgccc cattcaacca aatgcaaacc tttttcaaaa aaattttcaa ataaaccatt
     2161 cgctaaaagt ccttctaaac cttcttgata aatatcataa tgataaatgc aaatatcatg
     2221 attttcatat ctttgcataa tggaaaaagt tggagaatcc acccttgcat caagaccaag
     2281 aaatttaacc caagcttgca ctaagcttgt ttttccgcta gccaaatctc cttgaagcaa
     2341 aacaacacct tctttaggca ttatttgaag catcgttttg atctcatttt ttgctaaaat
     2401 aaattctttc ataattttac cacatattca ttttgtgcgt ttttaggaat acttttcgtg
     2461 ctaggtatag ctaggacttt atatttttga gtgtattcag taaaatgtaa agtgataata
     2521 tcacccacct taacctcttt actcgcttta acaataacgc cattaatccc cactacacca
     2581 cttttacaca tatcttcaga aatagctctt cttttcgtga tattaactac atttaaaaat
     2641 ttatctactc tcataaaagc aattttagca aaaaaaatca atttttggaa caaaatttgc
     2701 ttacgccttt gctttatttt ttaagaaaat agcaagtaaa aacttttctt taatgaaatt
     2761 tggatacaat tttacaattt tcaaatctat tttaacaaag gatatcttat gaaaaatgaa
     2821 gtaaaaaaag tagttttagc gtattctggg gggcttgata cgagcattat tttaaaatgg
     2881 cttcaagatg agtataattg tgaagttgta acttttacag cagatattgg tcaaggtgaa
     2941 gaactcgaac ctgcaagaaa aaaagccctt tctttaggca taaaagaaga aaatattttc
     3001 attaaagatt taagagatga atttgttaaa gattatgtat ttcctatgtt tagagccaat
     3061 gcgatttatg aaggagaata tcttttagga acaagtatag caagaccact tatagcaaaa
     3121 actcaagcac aaatcgccct gcaaacaggt gctgatgcag taagtcatgg tgccacaggt
     3181 aaaggaaatg atcaagtgcg ttttgaactt ggttatcttg cttttaatcc cgatttaaaa
     3241 atcatcgctc catggcgtga gtgggattta aacagtcgcg aaaagctcct tgcttatgca
     3301 caaaaacacg gtattgatat ttctaagaaa aaaggaaaat ctccttattc tatggacgca
     3361 aatttacttc atatttctta cgaaggactt gtcttagaag atcctgcaca cgcacctgaa
     3421 gaagatatgt ggagatggag taaaagccca aaagatgctc caaatgaaag tgaaattata
     3481 gaacttgatt tccaaaaagg agatttagta gcgataaatg gagaaaaact aagtcctgca
     3541 ggacttttaa ccaaacttaa cgaactaggc tgcaaacacg gtataggacg ccttgatata
     3601 gtagaaaatc gctatgtagg tatgaaaagc cgtggttgtt acgaaacacc aggtggtacc
     3661 atacttttaa aagcacacag ggcgcttgaa agcatcacgc ttgatagaga agcagcacac
     3721 ttaaaagatg aactcatgcc aaaatacgca agtttaattt acaatggcta ttggttctcg
     3781 cctgaaagaa tgatgcttca agccttaatc gatgagtctc aaattcacgc caatggcaga
     3841 gtaaaactcg agctttataa aggcaatgtg atggttatag gacgagaaag ttcgaacgat
     3901 agcttgttta acgcagctta ttgtactttt gaagaagatg aagtgtataa tcaaaaagat
     3961 gcagcaggct ttatcaagct taatgctttg cgttttatca tcgcaggaaa aaatggaaga
     4021 aaattttaat aaaggaataa aatgaaagta ttattaatca aagatgtaaa agcatttgga
     4081 aaagcaggag aaataaaaga agtaaaagac ggttacggac aaaatttctt aatcgctaaa
     4141 ggctttgcta aagcagctac taatgaagtt ttaagaaaat atgaaagcga caagaaaaaa
     4201 gaggctgaaa atttacgctt tgaaatcgca aatttagaaa aactcaaaga agaacttagc
     4261 aaaatcactc ttgaaatttc aaaacccgta ggtgcaaatg gaagtttgtt tggtggcgta
     4321 accaaagatg aaatcgctca cgccctaaaa gaacaaagcc atatagaaat cgataaaaaa
     4381 agtttagaat gtgatacctt aaaaagctta ggagtccacg aagtaagcgt aaaacttgga
     4441 cacgcaatcc atgctaaatt taacataaat ataaaggcag aataatgttt cacgcaacaa
     4501 cgattttagc ttacaaaggt aaaaataaat ccgtaattgg cggagatgga caagtaagct
     4561 ttggaaatac ggtgctaaaa ggcaatgctg taaagattag aaaactcaac aatggcaaag
     4621 ttttagcagg ttttgcagga tcaacagctg atgcttttaa tctttttgat atgtttgaaa
     4681 atctccttca aagttctaaa ggcgatcttt taaaagcagc aattgacttt tctaaagaat
     4741 ggagaaaaga caaataccta agaaaacttg aagccatgat gcttgtactt gatagaaatc
     4801 acatttttct actttctggt acaggcgatg tggtcgaacc tgaagatggg caaatcgcag
     4861 ccataggaag tggtggaaac tatgcacttt cagctgctag agccttagca aaacataccg
     4921 atttagatga agaagaactt gtaaaatcaa gtcttcaaat cgcaggtgaa atttgcattt
     4981 ataccaatac caatatcaaa acttatgtaa tcgaggatga gaaatgaatc taactccaaa
     5041 agaaatcgtt aaatttttag atgattatgt tataggacaa aaaaaagcta aaaaaatcat
     5101 agctatagct ttaagaaatc gctaccgcag aatgcaactt agccctgagt tgcaagatga
     5161 tatagtgcca aaaaatatct tgatgatagg ttctacaggt gtaggaaaaa cagaaatcgc
     5221 taggcgttta gctaaaatga tgggctttcc tttcatcaaa atcgaagcaa gtaaatatac
     5281 tgaagtaggt tttgtaggtc gtgatgtaga aagcatggta agagatcttg ccaatgcagc
     5341 tttaaattta gtaaaaaacg aacaaagaga aaaaaacaaa gataaaatcg atgaatttat
     5401 agaaaataaa attttagaaa aacttttgcc acctctacca aaaggtatca gcgatgaaaa
     5461 acaagaagaa tataaaaaca gtcttgaaaa aatgagaact aaactaagaa atggcgatct
     5521 tgatgaaagc gccatagaga tagaaatttc acaaaatatg tttgatacca atcctaacct
     5581 acctcctgaa atgggtgcaa tgcaagatat agttaaggtt ataggcgttg gcagcaaaaa
     5641 agtcaaaaaa gaaatgaaaa tcaaagacgc taaaaatgct ttaaaaaacg aagcaggaga
     5701 aaaaatccta gatcaagaaa gcatcaaaag cgaagcctta aaaagagcgg aaaatgaagg
     5761 gattattttt attgatgaaa tcgataaaat cgctgtttca agcggaaatt caaaccgcca
     5821 agatccaagc aaagaagggg tgcaaagaga cttacttcct atagtcgagg gatcaaatgt
     5881 acaaacaaaa ataggtactt taaaaaccga tcatattctc tttatcgccg caggagcttt
     5941 tcatcttagc aaaccaagcg atcttatccc tgaattgcaa ggacgctttc ctttaagagt
     6001 ggaattagat agtcttgatg ataaagctct ttatgaaatt ttaacacgcc ctaaaaattc
     6061 acttttaaaa caatactctc agcttttaaa aactgaaaat ttagaacttg attttaatga
     6121 tgaggcaatt aaagaaatag caaaaatagc ttcaagagcc aatgaagaaa tgcaagatat
     6181 aggtgctaga cgcttacata ctgtgataga aaaattactt gaagatttaa gctttgaagc
     6241 tgatgagtat gcgggtaaaa aattcgtagt ggataaaaaa atggtagaag aaaaactcgg
     6301 agatatcata gaaaataaag atcttgcaag gtatattttg tgaaaagtgg ctttgttagc
     6361 atcatagggc gtactaatgc aggaaaaagt actttaatca attccttatt agaagaaaaa
     6421 atcgccctag tttctcacaa acaaaacgcc acaagacgta aaatcaaagc catagtgatg
     6481 catgaaaaaa atcaaatcat tttcatcgat accccaggac ttcacgaaag cagtgctagg
     6541 cttaatcaac tgcttgtcca aagtgctatt aaatccatgg gggattgtga tgtgatttta
     6601 tttgtggcga gtgtttttga tagtacaaaa gactatgaaa attttcttag tctaaaccca
     6661 caagtaccac atatcatcac tttaaataaa gtagatttaa ccgacaatac tacactttta
     6721 aaaaaactta gcgaatatgc aaaatttagc caacatttta aggctatcat tccttattct
     6781 tctaagaaaa aaagctataa aaaaggcttg ttagatgaga tagtaaaata tcttgacgaa
     6841 catgaatatt tttatgatcc tgaattttta agtgcgagta gcgaaaaaga aatttataga
     6901 gatttcatac ttgaaagtat ttatgaaaat ttaagcgatg agcttcctta tagtagcgaa
     6961 gtgcttatcc atcgcaccaa agacacacct aatcttttaa tcctagaagc caatatcatc
     7021 acagatacaa actctcacaa gggtatgctt ataggaaaag aaggggcaac tttaaaaaga
     7081 ataggcaaag atgcacgctt taaaatttca aaacttgccc aaaaaaaggt acttttaaag
     7141 ctttttgtaa cagtgaaaaa aaactggcaa aaagatgaag aatttttaaa aaaacttcta
     7201 aatgatgaaa attaattcat taaataaaat aaattttata aaatctacag atttacttta
     7261 tgctcaaaga acgggaatat ccaaagaaga cgaacttttt aacaatttaa ccgcagattt
     7321 taagctaagc aaaccctttg
//
LOCUS       DAPIWU010000081         7277 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.081, whole genome shotgun sequence.
ACCESSION   DAPIWU010000081 DAPIWU010000000
VERSION     DAPIWU010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7277
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.081"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..2602
                     /locus_tag="RJ285_001380"
     CDS             <1..2602
                     /locus_tag="RJ285_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7384134.1"
                     /translation="KRDYKTLSVEHLGTIYEGLLSYFFEIANEDIYYVSYKEKSKEIE
                     CYFDNYDFKILEKSKKVEKYTFYKKGQIYLKNTSNSRKASASFYTPQSIANFLIQSAL
                     KDKLNNENILKFKILDNACGSGHFLVGVLNAITHIVLSDFDHFTNLKELYEEEKENIL
                     NYIKDFVQDYEVDESDILKRLLLKRIIYGVDLNPFSIELTKLSLWIDSFIFTTPLSFI
                     EHHIKCGNALINSNLSDFKDLIKQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEEQ
                     IKQSKQIYQNEITPKLNKLNLYLNYINTLHFVNKEELQILKALSQDDIQNLSQNEQAK
                     AIISKYQKEFNFFNYELEFPEITENQVFKGFDIIIGNPPWDKTKFSDSDFFPQYKSDY
                     RSLIASKKKEIQDNLLAKDYIKQNYEKQKAYINDLNEYYKKTYPLNKGSGDGNLFRLF
                     VEKNLSLLKQDGNLAYVLPSALMFEDGSLTLRKEILENKTLEYFYSFENRQAIFADVD
                     SRYKFALMLIKNTQANHTHKIKMMFYKTDINSLKNKDEILTLNLKDIKKLSPTHLALM
                     KLKDKQALEILRKSYNAFQNLSFDYIDFRRELDMTNDKDLFIEEFREGLLPLYEGKMI
                     HQFDANFSQATYFLEKAKFDERLKSKELYRAKKATGKELNPKLIKYDREFFRLGYRKI
                     ASDTNERTLIASLLPKNCGGADSTYSNIPKQYVLKDDVICMDIVPYERILFVLALFNS
                     LVVDFIIRNMVQINVSKSYLERIPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDQNRH
                     FDELKQEFNIKNEEIPKTKKAYDILRAKNDLLVKELYGLSDDEFSYMISTFKVLNEKQ
                     SEYITLLKTI"
     gene            complement(2630..3820)
                     /locus_tag="RJ285_001381"
     CDS             complement(2630..3820)
                     /locus_tag="RJ285_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDV7384135.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHCTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFKLNKQRILGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(3834..5339)
                     /gene="pta"
                     /locus_tag="RJ285_001382"
     CDS             complement(3834..5339)
                     /gene="pta"
                     /locus_tag="RJ285_001382"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDV7384136.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSIKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDSAKLSLDLNTIRIINPLKSEYNQEFASILYEARKSKGMSLEEA
                     RKLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPSAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            5429..6127
                     /gene="flgH"
                     /locus_tag="RJ285_001383"
     CDS             5429..6127
                     /gene="flgH"
                     /locus_tag="RJ285_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HDV7384137.1"
                     /translation="MKKVLFYVLPFVFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            complement(6157..7230)
                     /gene="ispG"
                     /locus_tag="RJ285_001384"
                     /gene_synonym="gcpE"
     CDS             complement(6157..7230)
                     /gene="ispG"
                     /locus_tag="RJ285_001384"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDV7384138.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKKRGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
BASE COUNT         2653 a         1224 c          984 g         2416 t
ORIGIN      
        1 taaaagagat tacaaaactt taagtgtaga acatttaggc acgatttatg aaggcttgct
       61 ttcttatttt tttgaaatag caaatgaaga tatttactat gtaagttata aagaaaaatc
      121 aaaagaaata gaatgttatt ttgataatta tgattttaaa attttagaaa aatcaaaaaa
      181 agtagaaaaa tacacctttt acaaaaaagg acaaatttac cttaaaaata ctagcaactc
      241 aagaaaagca agcgcaagct tttacacacc tcaatccata gctaattttt taatccaaag
      301 tgctttaaaa gacaaactaa acaatgaaaa tattttgaaa tttaaaatac tagacaatgc
      361 ttgcggtagt ggacattttt tagttggagt tttaaatgct attacacaca ttgttttatc
      421 agattttgat cattttacaa atttaaaaga actttacgaa gaagaaaaag aaaatatttt
      481 aaactatata aaagattttg tgcaagacta tgaagtagat gagagtgata ttttaaaacg
      541 acttttacta aaacgcatta tttatggggt ggatttaaac ccttttagca tagagcttac
      601 taaacttagc ctttggatag atagttttat ctttacaacc ccactttctt ttatagaaca
      661 ccacataaag tgcggcaatg ctttgataaa ttctaatcta agtgatttta aagatttgat
      721 aaaacaaaac tcaagcaacc tttttacaaa ttccataaca caagaatttg aaattttaca
      781 agaagtattt gaaaaacttg acaacctaaa agataccaac gaagaacaaa tcaaacaatc
      841 caaacaaatc tatcaaaatg aaatcacacc aaaacttaat aaactaaatt tatatctaaa
      901 ctatatcaac acgcttcatt ttgtcaacaa agaagaatta caaattctaa aagccctaag
      961 tcaagatgat atacaaaatt taagccaaaa tgaacaagca aaagctatca ttagcaaata
     1021 tcaaaaagaa tttaacttct ttaactatga gttagaattt cctgaaatca cagaaaatca
     1081 agtctttaaa ggctttgata tcattatagg taatccacct tgggataaaa ctaaatttag
     1141 tgatagcgat ttctttccac aatacaaaag cgattataga agcttaatcg ctagcaagaa
     1201 aaaagaaatt caagacaatt tgctagcaaa agattatata aagcaaaatt acgaaaaaca
     1261 aaaagcatat ataaatgatt taaacgagta ttataaaaaa acctatcctt taaacaaagg
     1321 cagtggagat ggaaatttat ttcgtctttt tgtagaaaaa aatctttctc ttttaaaaca
     1381 agatggaaat ttagcttatg tacttcctag tgctttgatg tttgaagatg gaagcttaac
     1441 tttaagaaaa gaaattttag aaaataaaac tttagagtat ttttatagtt ttgaaaatag
     1501 acaagctata tttgctgatg tggattcaag gtataaattt gctcttatgc ttataaaaaa
     1561 cacgcaagca aatcacactc ataaaatcaa aatgatgttt tataaaacag atataaactc
     1621 attaaaaaac aaagatgaaa ttttaactct aaatttaaaa gatatcaaaa agctaagccc
     1681 aactcaccta gccttaatga agttaaaaga caaacaagct ttagaaattc taagaaaatc
     1741 ttataatgct tttcaaaact tgtcttttga ttatatagat tttagaagag aacttgatat
     1801 gacaaacgat aaagatttgt ttatagaaga gtttagggaa ggacttttac ccttatatga
     1861 aggtaaaatg atacatcaat ttgatgcaaa ttttagccaa gctacttatt ttttagaaaa
     1921 ggctaaattt gatgagcgtt taaaaagtaa agaactttat agagctaaaa aagctactgg
     1981 gaaagaatta aatcctaaat taataaaata cgatagagaa ttttttagac tcggatatag
     2041 aaaaattgca agtgatacaa atgagagaac tttgatagct tctttattgc caaaaaattg
     2101 cggtggagct gatagtactt atagtaacat tccaaaacaa tatgttttaa aagatgatgt
     2161 aatttgcatg gatatagtgc cttatgaaag aattttattt gttttagctt tgtttaattc
     2221 tttagtggtt gattttatca taagaaatat ggtgcaaatc aatgtaagca aatcttattt
     2281 agaaagaatt cccctgcctc aaccaagtga tgaagaaatt caaaacaatg aaatttataa
     2341 aaccctcgct aaaaatgctt tgcttttaca gctttacaat gatcaaaatc gtcattttga
     2401 tgagctaaaa caagaattta atataaaaaa tgaagaaatt ccaaaaacta aaaaggctta
     2461 tgatatctta agagcaaaaa atgatttatt ggttaaagaa ctttatggtt taagtgatga
     2521 tgaattttct tacatgataa gcacttttaa agttttaaat gaaaagcaaa gtgaatatat
     2581 aaccttgcta aaaactatat aaatgaaaga tttatatagt ttttaaaatt taatttttac
     2641 cgataagttc ttctgtaatt ctagcgattt ctaattcttc atctgtagga ataacaagca
     2701 ctttaacttt agaatttgca tgatttatca ttctttcgcc caaaatcctt tgtttgttaa
     2761 gtttaaaatc taactcgata ccaagatgag ctaatctctc gcatactttt tgtcgaacca
     2821 aactatcatt ttctcctata ccacctgtaa aaataatagc atcggttttt ggcaacacag
     2881 caaagtagga tcctatatat ttaacaagac gataacaaaa catatcaaga gccaagcgtg
     2941 ctttatcatt accttgttct atctctcttt ctatatctct aaaatcatta taaccgcaaa
     3001 ttccatatac tccacttttt ttattcatca gtgtatctat ttcttctata gttaaaccct
     3061 taagatgact aacaaaaggt aaaatagcag ggtctaaatc tccacaacgc gttcccataa
     3121 taagtccttc aagtggagta aagcccatag aagtatccat actcttacct ttttctatag
     3181 cacatacact tgcaccattt ccaagatgag cagagatgac atttaattca ttttgatctt
     3241 tttgaagaaa ttttgccgct ctagaactaa cataagcatg agaagtccca tgaaaaccat
     3301 atcttctaat attatgctta tcataaaaat cataaggcaa agcatacata taagcaaaat
     3361 caggcatagt gcaatgaaaa gctgtatcaa aaatagctgc attagcaaca ctaggtgcag
     3421 ctttgatcat tgtttttata cctgctaaat gcgcaggatt atgcaaagga gcaaaaatac
     3481 taaccctatc tatctcttta agaacataat catccactaa acaatgctcg cttaaatttc
     3541 ttcctccatg aactatacga tgaccgcagc catcaagtgc atttaaatct gctaaaattc
     3601 ctgattcttt aaaaagctca ttaactatac taaggccttc ttcgtgatta tttattgtta
     3661 attctctttc aaaactttca ttatttaaag tattttttaa tacaaccttt gaattttgct
     3721 ctccaatttt ttctaccaat ccactggctt taacgatttt attatcaaaa aatttaaatt
     3781 taatcgatga agaacctgaa tttaaaacca aaattttcat ttatcattcc tttctattga
     3841 gcttgtattg cacttaaaat tacggtatct acaatatcat ctaccaaaca tccacgactt
     3901 aaatcattaa caggtttttt aagaccttgc aaaataggac cgattgctaa agcattagca
     3961 gttctttgaa ctgctttgta acaaatattt gctgcgttaa gatcaggaaa aatatacaca
     4021 tttgcatgac ctgctatctt agaatttggc attttctttg ctgcagtttt tggatcataa
     4081 gcgcagtcaa actgcatagg accatctata ttcaactcag gatatttttc tttagcaatc
     4141 tttaatgctt cttttacaag atctacgctt tctcctttac cgctatcacc actagaataa
     4201 gaaagcaaag ctattcttgg ttcaagtcca aaagatttag cagtcatagc acttacatag
     4261 gcactagttg caagttgctc agcacttggg cttggattta cagcacaatc agcaaaagct
     4321 aaaacttgat cttcaagtcc cataaagaaa attcctgaaa cggaactaat accttcttta
     4381 gttttaataa gctgtaatgc agggcgaatc gtttcagccg tagtagttga tgctccacta
     4441 accatagcat cagcttttcc agtgtgtata agtaaagttc caaaataagt tttatcttga
     4501 actagcttcc tagcctcttc taaactcata cctttagatt ttcttgcttc ataaagaata
     4561 gaagcaaatt cttgattata ttctgatttg agtggattta taatccgtat agtatttaaa
     4621 tcaagactta atttagcact atcttgcttg attttttctt catcacccaa taaaataaga
     4681 tcaacaactt tacttttcaa taaaatttca gcagctttta aaattctctc atcattactt
     4741 tctggcaaaa caacggtttt tttatttttt atactttgtt taatcaattc atatttaaaa
     4801 cgatgaggag ttataaaatc atattcttta agtttttgca cttcttcaaa attaaaattt
     4861 tcattaatca aaacataatt acgaccatct agagcatgat cgaaatattt ttgagctata
     4921 agtttatctt catcattgat aatagcagca ataggtgtat taagattttt agctaatttt
     4981 atactaagat caaatccatc aagtattcca aattcgcaaa aactatttac aagcacaaaa
     5041 tcgtatttgc gttttaactc ttcgtattct tctaaaataa cattaaaaaa attatgagga
     5101 tctttgctaa attcttccat tgcctctcta aaggtaaaac cataggcgct ttttacggtt
     5161 tgattgatat taaattcttc caaccaaccc tgcaaaacag gaacgcgatg tatgtatatc
     5221 acagggcaat aaattgcgat atttttgtaa attttgctat aatttttaag caaatttgta
     5281 ctaataatag tatttaactc atcacttcta gatctcatca aataaagatt tgccatcatt
     5341 ttctccttga atttataaat gtggaacact ctttgctttt tctaatttta acaaagaaaa
     5401 ataaaaattc atattttaaa ggacgaaaat gaaaaaagtt ttattttatg tgttaccgtt
     5461 tgtgtttttt ggttgttctg caacggttga tccgcaaatt tcaatgaaac cacctgctta
     5521 tgtagaagaa cttgcaccaa aacaaagtaa taatatagaa agtgcgccag gatcgctttt
     5581 tggcaaagga gataatcctt tattttcaga taaaaaagct atgaatgtaa atgatttagt
     5641 tacagttgtt atacaagaaa gtaccactca aagcacacaa gctaataaag caacaagcag
     5701 aactaatacc tcaaatttag gcggaggtgc tttaacagga agttcaggag tggtagctaa
     5761 tgctcttaat aaagtcaatg cttattctaa tataggcttt caaaccaata gttcaaacaa
     5821 ctacacagga acaggctcgc aaagcagaaa tgaaagtttc aatactacaa tttcaacacg
     5881 tgtaattaaa attttatcaa atggtaatta ttttatcgaa ggttcaagag agcttttaat
     5941 caacggagag aagcaaatca tacaattaag cggtgttatt cgtccttatg acatcggtca
     6001 agacaatact atagatagta aatatatagc agatgctaaa attctttata aaacagaagg
     6061 tgaagtggat agaagcacaa gaaaaccttg gggtagcaaa gttatagaag cgatatggcc
     6121 attctaaaag caaggttaaa ccttgcttct tggcttttat tcttttacag ccctactttt
     6181 aacctcatct tcaacttcag ctaaaaatct atctacaagt tcactttctt tcagtttagc
     6241 tacaacttca ccatgtctta taacaagtcc ttgatttttc ccaaaggcta tagccacatc
     6301 agcgccctta gcttcaccta aagcatttac cacgcaaccc atgacactga tatttaaagg
     6361 ttcttttata tgcttagttt tttcctctac gattttaatc gcacttaaca aatcactttg
     6421 aatcctaccg caagttggac aagagatgat atttactccg cttttttgca ctccgctatc
     6481 ttgtaaaatc gcccttgcta cacgaatttc ttcttcaagc tcacccgtca tagaaacacg
     6541 catagtatcg cctatacctt taagaagtaa atttcctaaa gctatagaac tttttacagt
     6601 gctatgaaat ttagttcctg cttcagttac ccctaagtga aaaggataat cacaaagcgg
     6661 tcttaatctc tcataagctt ctatagtttt ttgagcatct gaagtcttca tggaaatttt
     6721 aatatcaaaa aagtctaaat cctctaaaag cttgatatta tacatcgcac tttctagcat
     6781 ggcatcgaca ccataaccaa atttatcact aaattgtttt tctatggagc cgtgatttac
     6841 accgatgcgt atagggatac cccgtttttt acatgctttt accacttctt taatattttc
     6901 tttagagcct atattgccag gatttatacg cacgccatcg ataaattcag cacaatatac
     6961 agccaaatta tgattaaaat gaatatctac gattaaaggt agaggacttt tagctttaat
     7021 ctcttttaaa gcccttgcat cagccatatc caagcacgcc aaacgcacta tatttgctcc
     7081 tgcaaaataa agacgattga tttgttctaa agaaccttct atatctcttg ttttagtaaa
     7141 aagcatagat tgaactgaaa tgggtgcatc accgcctatt aaaacatttc ctactttgat
     7201 ttgtctggtt ttaaatcttt tatactccat aacttcactc tttgaaaaat tttaatatca
     7261 aattttaact ttttatt
//
LOCUS       DAPIWU010000082         7241 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.082, whole genome shotgun sequence.
ACCESSION   DAPIWU010000082 DAPIWU010000000
VERSION     DAPIWU010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7241
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.082"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..551
                     /locus_tag="RJ285_001385"
     CDS             <1..551
                     /locus_tag="RJ285_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384139.1"
                     /translation="LSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTKGEFKNVEY
                     KFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDTDIKVVFQD
                     VIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSKALKALSDV
                     AAGHGGISWPLVDISFNADLAE"
     gene            complement(567..1133)
                     /gene="rsmG"
                     /locus_tag="RJ285_001386"
     CDS             complement(567..1133)
                     /gene="rsmG"
                     /locus_tag="RJ285_001386"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDV7384140.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNLADIGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(1134..1694)
                     /gene="ribA"
                     /locus_tag="RJ285_001387"
     CDS             complement(1134..1694)
                     /gene="ribA"
                     /locus_tag="RJ285_001387"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HDV7384141.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            1752..2735
                     /gene="hemB"
                     /locus_tag="RJ285_001388"
     CDS             1752..2735
                     /gene="hemB"
                     /locus_tag="RJ285_001388"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDV7384142.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDVTLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPAFAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            2732..3652
                     /gene="argF"
                     /locus_tag="RJ285_001389"
     CDS             2732..3652
                     /gene="argF"
                     /locus_tag="RJ285_001389"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDV7384143.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVVGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSIANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVAKALLCFLDNQRGRE"
     gene            3649..4140
                     /locus_tag="RJ285_001390"
     CDS             3649..4140
                     /locus_tag="RJ285_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HDV7384144.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSESENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            4127..5482
                     /gene="hemN"
                     /locus_tag="RJ285_001391"
     CDS             4127..5482
                     /gene="hemN"
                     /locus_tag="RJ285_001391"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDV7384145.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQSLILKIRSVFGNFSKDAEISCEIDPRFLNEEQAIVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQSFELTQNALNLVRNKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGIGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            5484..6749
                     /locus_tag="RJ285_001392"
     CDS             5484..6749
                     /locus_tag="RJ285_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDV7384146.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKITKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            6746..>7241
                     /locus_tag="RJ285_001393"
     CDS             6746..>7241
                     /locus_tag="RJ285_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384147.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFLSDFKEGKQEVVAIKKHEKLEIFKNLSQED
                     QEISF"
BASE COUNT         2600 a          872 c         1345 g         2424 t
ORIGIN      
        1 ttttaagttc ttgcttgtta gcttcggctt taagtgctgt atcttttaaa gaagatagtt
       61 taaaggtttc ttttgaagga tataaaacta aagatatgat aggaacaaaa ggtgaattta
      121 aaaatgtaga atataaattt tctaaaaata taaaggattt ggcaagttat cttaaaggcg
      181 ctaaagctac tataaagcca agcaatgctt ttatgggtga aggcaatgat attataacca
      241 ataatatcac aaaagtattt ttccctgctt tattgggaga tacggatatt aaagttgttt
      301 ttcaagatgt gattgcgggt gaaaataaag gcgttatttc agcaaaaatt actatggata
      361 aaaaaagtac tattgtacct ttaacttata ccatcaaaga taataaattt gaagctaaag
      421 gacaacttga tttgcatact tttaaaaatg gttctaaagc attaaaagca ttaagcgatg
      481 ttgctgcagg acatggtgga atttcttggc ctttagtgga tatcagtttt aatgctgatt
      541 tagcagaata aaaagtagcc ttagggctac tttaaaatac aatatcttct taaattattt
      601 tcaaaaattt cataatcttt tatattttca agttcttgat aaatttcact acctttccat
      661 aaaataaaaa ctgtattttc atcttttaga tttttgcaaa tttcaagcaa aggcttgaca
      721 tccattaagg ctcttgaagt gatgatatca gctttaaagg tattcttgta ttcttgaact
      781 ttttctttgt aaatatgtaa atttggaagt tcacattcta tttttaatgt ccgcaaaaag
      841 gcagcttttt tgggattggg ttcgaaaaga tgaaaattgc tttgcagtaa aaaagctaaa
      901 aatacagctg gaaatcctgc gccacttcct atatcggcaa gattttttgc tttagaaaaa
      961 tcataaaaat ctaaaatttt aatactatca aagatatttt catctatatt ttttaaatga
     1021 gtaagattgt gaatgcggtt aaatttagat aataattctt tataaatttt taccttttct
     1081 tcaaagtttt ttaaatcgta gttttgcaaa aaatcataat ctttaaaaat catttattta
     1141 agatgtccca tttgagtttg ttttatgttt aaatactcta cattaaaacg attaggttct
     1201 attaaaatcg gtatgcgtgt gatgattttt tctttgatag aatctagctt ttcagggtta
     1261 tttgtgagta aattaacctt agaaatttca tagtgtttga gtataaattc tacaatttca
     1321 taagttctct catcggcttt aaagccaagc tgatgatttg ctttaatcgt atcaaaacct
     1381 ttatcttgta aagcataagc attaaccttg ttaaaaagcc ctatacccct tccttcttgc
     1441 ctaagataaa tcaccattcc gccattcttt tctatatatt ttagtgaaaa ttcaagctgt
     1501 tccccacaat cacactttaa acttcctaaa gcatctcctg ttaagcactc tgaatgaatt
     1561 cttagattga gtgtgtcttt tggagtattt ttaaatatac ataaatgttc tttatcattt
     1621 tctttgaaac tttgtatttg gaaatttccc catttgctag gtaaattcgc aatttctgaa
     1681 atttttattt tcatttacta ctctctataa tcaaatttat gttaagattt tagcaaaaaa
     1741 aggacaaaaa aatgtttaaa agatttagaa gattaaggct taatgaaaac ttaagagcca
     1801 tggtaagaga aaattcttta agtgtaaatg atttgattta tccgcttttt gtggttaatg
     1861 gaacggggat aaaaaaagaa atttcttcta tgcctgatgt gtttcaaatg agtttagatg
     1921 aaattttaaa agagtgtcaa aatgtagtta atttaggcat taaagccatt atactttttg
     1981 gcgttttgga aaatgagaaa aaagacagct gtggaagcga tgctttagat gatgaagggc
     2041 ttgttgcaag aagtataaga gagattaaga aaaattttcc agatcttttt ataatcagtg
     2101 atctttgttt ttgtgaatac acagatcacg ggcattgtgg gattatcgat ccaaaaacaa
     2161 aaagtgtgga taatgatgtc actttagaaa tttcagccaa acaagcctta gttcacgcaa
     2221 gagcaggggt agatatgata gcacctagtg gaatgatgga tggtattatc actactttgc
     2281 gcaaagcttt agataaagaa ggttttgaaa atttgcctat aatggcgtat tctactaaat
     2341 ttgcttcaag ttattatggg ccatttcgag atgtagcaga atcagctcca agttatggag
     2401 atagaaaaag ctatcaaatg gattttgcta atggtaaaga agctttagaa gaaagcttgg
     2461 aagatgaagc acaaggagct gatattttga tggtaaaacc cgcttttgct tatcttgatg
     2521 tggttaaaga aatatccctt cattctaact tgcctttgtg tgtttataat gtaagcggag
     2581 agtatgctat gttaaaggca gctaaaaatg caggagtgat tgattatgaa aaagttttgt
     2641 atgaaactat gatagctttt aaaagagcag gggcaaagct tatcatcact tatcatgcca
     2701 aagaattagc taaaatgtta aaaggagaaa aatgaaacat tttttaactt taagagattt
     2761 ttctaaggag gaaattttaa gccttgtaaa tcatgctagc gagttaaaaa aagagcctaa
     2821 aaaactttta caagataaaa ctttagcaat gatttttgaa aaaaactcta caagaacaag
     2881 aatggccttt gaattagcca taacagagct tggcggaaag gctttatttt taagtagcaa
     2941 tgatttacaa cttagtcgtg gcgagcctgt aaaggataca gctagggtgg taggggcgat
     3001 ggttgatttt gtgatgatga gagtcaataa acatgaaact ttactcgaat ttgcaagata
     3061 ttctaaagcc cctgtgatca atgctttaag cgagctttat caccctactc aggttttagg
     3121 agatttgctt actatcaaag aatggaataa gatgcaaaat ggtatagcaa aagttgcttt
     3181 tatcggagat agtaacaata tgtgcaattc ttggcttatt gcggctgcga ttttgggctt
     3241 tgaatttagt atagctatac caaaaaacta taaaattagc cctgaaattt gggaatttgc
     3301 tatgaaacag gctttgattt caggagctaa aatttcctta agtcatgata aatttgaagc
     3361 cttaaaggat aaagatgtag tcattaccga tacttgggtt tctatgggtg aagagaatga
     3421 aaaagaacgc aagattaagg aatttgaagg atttatgatc gatgaaaagg ctatgagcat
     3481 tgcgaataaa gacgcgatat tgcttcattg tttgcctgct tatagaggtt atgaagtgag
     3541 tgaagaaatt tttgaaaaac atgcagatgt gatttttgaa gaagcaagaa atcgccttta
     3601 tgtggcaaaa gccttgcttt gctttttgga taatcagaga ggaagagaat gaaagagcta
     3661 gaaaagtata gcacttgctt aaagcgcatt gatgaattta gtcaaaatct aggaataaag
     3721 aaaaaagata gaacgatttt taaaatgaag caaagcgaga gtgaaaacga aaaatgttta
     3781 gttcttgaaa atggaagttt tgattctcct gagccttggt ttgtgataga tgaaaacgat
     3841 gaaattcaca ctttgctttc tttacaaagt cttaagaata tacttgaaag tttaaaacaa
     3901 agtcaaaaag agaattttga attgcgttta gaaaaggcga tttatcaaca aattcctgta
     3961 gattttaacg atgtttggac ggttgccatg gatgagatca agcaaaaggc acaaaatggt
     4021 actatggaag ttagtattga tcttgaaaaa ttaatttcta aaatcaaaca agagcatcca
     4081 aatttatttg tagatatgca agcgatgata gaaagggtaa accaaaatga gagattataa
     4141 agcttttgta aaatactcta aagcaggacc acgctatact tcttatccta cagcagtaga
     4201 gtttaataca aatttcaaat acgaagaata tatagaaatt ttaaaaaaac aagatagatc
     4261 tttatcgctt tattttcatt taccattttg taggagtgct tgttattttt gtggttgcaa
     4321 tgtcatctat actgcaaaag aagagagtaa agaaaggtat ttaacttata tttttaaaga
     4381 gcttgatatt ttaagtacca ttttagatac taaaagagaa gtggtgcaaa tgcactttgg
     4441 tggcggaact ccaacttttt ttagcgctaa acaacttcaa agtttgattt taaaaatcag
     4501 atctgttttt ggaaattttt ctaaagatgc agagattagc tgtgagatcg atccgcgttt
     4561 tttaaatgag gaacaagcca tagttttaac gcaaaatggc tttaatcgta tcagctttgg
     4621 agtgcaggat tttgatgaaa aagttcaaaa agaaattcat cgcatccagt cttttgaatt
     4681 aacacaaaat gctttaaatc ttgtaagaaa taaaggcata aagtctgtaa atatggattt
     4741 aatttatggt ttgccttatc aaaatttaca aagctttaca caaactttag aaaaagttat
     4801 gcttttaaac cctgatcgtt tggcgatttt taattacgct catgtgcctt ggcttaagaa
     4861 aaatatgaga aaatttgatg aaaatacctt gccaagtcct gatgttaagc ttgaaatttt
     4921 agaattttgt gagaaatttt taagcaaaaa tggttataaa atgataggaa tggatcattt
     4981 tgcaaaagaa aatgatgagc tttttaaagc tttagaaaat ggaactttgc atagaaattt
     5041 ccaaggttat actaccaaag gcggtgctga tttagtcggt attgggctta caagtatagg
     5101 cgaagggcaa agacattatg cgcaaaattt taaagatatg tcaagttatg aagctgcatt
     5161 agatagagga gttttgcctt ttgaaagagg cgtagcttta agcgatgatg atgagcttag
     5221 aaaagcagtg attatggagt taatggcaaa ttttaagctt gatatcaagt caatagaaaa
     5281 agaattttgc attgattttc aggagtattt taaagaggat ttaaaagctt tagaagaata
     5341 caaagatttt attaattttg atgaaaattt tatcaaagtc aatgaaacag gcgttttgct
     5401 tataagaaat attgccatgt gttttgatgc ttatatgaaa aacattagtg aagataaaaa
     5461 agtattctca aaaacggtgt aagatgaaat ttagtcaaat aagtgatgct tgtgttaaat
     5521 gtggcaaatg tatacctgtt tgtactatac atgaagaaaa tcgcgatgaa attactagtc
     5581 caagaggatt tttagatctt ttagctgctt ataaagaggg aagtttagaa cttgataaag
     5641 aagctaagaa agtttttgaa tcttgttttt tatgcaccaa ttgtgttgaa gtatgtccaa
     5701 gtaaattaag agtagataat gccatagaag aagttcgtta tgatatagct aaaaaatttg
     5761 gtatagcttg gtataaaaaa cttatttttt tctttttaag aagacgcaaa attttagatt
     5821 tggtagctaa gcttggctat gtgtttcaaa gttgtgcgtt taaaattcaa aatgagaatg
     5881 aaaatacagg tatgaaggca agattttcca tgccttttgt taaaaaggga agattactta
     5941 caagttttaa taaaaaaagt ttcttaaatt ctaatccaaa atttatcaat aatgatggag
     6001 aaaaaacaat aggttttttt gtaggttgtt tggcgaatta tttttacata gatacggcta
     6061 atgcagtgct taaaatcact aaggaattaa aaatcaatgt ggatttgatg aaagaacaag
     6121 tgtgttgtgg agcaccgcaa ttttttacgg gtgattttaa aagtgttgaa gttttggcta
     6181 aaaaaaatat tgagtatttt gaaaaaaaat tagaaaaatt agatgctatt atagttcctg
     6241 aggccacttg ttcggctatg ttaaagatag attatgaaca tttttttata atgcaaaatg
     6301 atttagactg ggcaaaacgc gcaaaatgtg tgtcatctaa gatatatatg gctagcgagt
     6361 atttttataa atttacttct ttggaagaaa ttttaaaaac aaaaaataaa tttaattata
     6421 gcattactta tcacgatcct tgccatgcaa gaaaaatgca aggggttttt aaagagccaa
     6481 gagaactttt aaaaacaaat tatcattttg tagaaatgag taattctaat acttgttgcg
     6541 gttttggcgg ggtgggtatg caaacggatt attatgatag agccttaagt gtagggctta
     6601 aaaaagcaca aatgatcgat gaaagtaagg ctagtgtggt aagtgccgag tgttcagctt
     6661 gcagaatgca aatttcaaat gcattagaac aaaattcaag caaggttgtt tttgctagtc
     6721 ctttagaact tatagcaaaa gctttgtgat gatgaagata gtatttaaag gcaaaagttc
     6781 tgaatatgaa attcaaagat cgtgcttttg tgttgatgct tttgtgatta aagataagat
     6841 tgaagaacga gatggtgttg attttatcac ttcaaatgta gatcttttgg aatttagtga
     6901 tgacagtttt acttttgaag aaattgtaaa acattttaat atttgtgata gtgaagatat
     6961 gattatcgtt gaagattttg acatgaaatc aaacaaagat aatcaaaacc aagaagatga
     7021 tatagaacac aacatcctaa aatccgaaaa aataatacat gaaaacacaa aacaaacaag
     7081 tatgcaattt aaaaatttaa aatttttttc aagaattttt aaaaatgaaa attttctttc
     7141 tgattttaaa gaaggtaaac aagaagttgt tgctatcaaa aaacacgaaa aacttgaaat
     7201 ttttaaaaat ttatctcaag aagatcaaga aattagcttt g
//
LOCUS       DAPIWU010000083         7237 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.083, whole genome shotgun sequence.
ACCESSION   DAPIWU010000083 DAPIWU010000000
VERSION     DAPIWU010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7237
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.083"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(481..1257)
                     /locus_tag="RJ285_001394"
     CDS             complement(481..1257)
                     /locus_tag="RJ285_001394"
                     /inference="COORDINATES: protein motif:HMM:NF012993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HDV7384148.1"
                     /translation="MMKIALAQIKTSPKWQENLEKILKLLNETKKQEAHLVVFPETCM
                     AFVPSDGSVNFQDIAQDIQDEFVQTILKESEKLKLAVVFGFFEKGAIKVKNCVLFVNS
                     GKILHKYHKTHLYNAFSYNESKDIEEGQNPIKAFYTPWGKMGMMVCYELRFPEIARSL
                     ALQGAKLILVPTAWVDGKLKKEHFSLLSRARALENTVFLCACSQTKNIYTGESALISP
                     LGIELIKMGEEEALAFVQIDLEEIAQLRKTLPCLEQRRKV"
     gene            complement(1261..2108)
                     /locus_tag="RJ285_001395"
                     /pseudo
     CDS             complement(1261..2108)
                     /locus_tag="RJ285_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009649884.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
     gene            complement(2181..2762)
                     /locus_tag="RJ285_001396"
     CDS             complement(2181..2762)
                     /locus_tag="RJ285_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7384149.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIFA"
     gene            2861..3202
                     /locus_tag="RJ285_001397"
     CDS             2861..3202
                     /locus_tag="RJ285_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDV7384150.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMCD
                     WEEENKKLQGK"
     gene            3203..3754
                     /locus_tag="RJ285_001398"
     CDS             3203..3754
                     /locus_tag="RJ285_001398"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384151.1"
                     /translation="MIKTIKILAFLAIFAFALSIALCFYLFFDYFIEERNIIILTLIF
                     ISMICGILLYFLNIILLSFKLKSISFALIFLGFLFCVLASFGFYQCYIEYNNFLFSQT
                     KGKLAFYFCAFFTTLAFILGYFHFKTMAKISSWNEFLFVYKFFMVALIVSYFNAFFGF
                     FMLGASAILLFISWYNFKTLKES"
     gene            complement(3757..4833)
                     /locus_tag="RJ285_001399"
     CDS             complement(3757..4833)
                     /locus_tag="RJ285_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDV7384152.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYDPSAYMDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITSKD
                     IDKAYENLTSGKAKFRYVIDMRDE"
     gene            4964..>7237
                     /locus_tag="RJ285_001400"
     CDS             4964..>7237
                     /locus_tag="RJ285_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDV7384153.1"
                     /translation="MQNLYSEDDTRVKFIDAKLYDSSWNEENIKRNYYFTDGRKLLGG
                     KRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKI
                     YEYNIRNHSGKYIDKFPSPKELFDRIYGNVKEWQYKLLTQNVMYIPQKELRYYQKIAI
                     DKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANIFFGIYQSLAANSKEQENTQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCANQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKLFQDNDKSYPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIEELKEQDEKEKITKE
                     HIKQTKEESKEKKSVTIHLKGTKLKVLDITTTYVGAQGKPLSTKEFLEFLIGKLGEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLREIFQKDCDIYDVLAHLSFNAE
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDEGLKPLIELSSLG
                     SVRELADEFGGLEILKQS"
BASE COUNT         2504 a         1107 c         1153 g         2473 t
ORIGIN      
        1 ttaataaaat attggctaag gctattggag ttaagaaata aaaacctatt gttttaaatt
       61 tagcatgggt attttttaaa aaatgattaa aaaatattaa aggagtgaga tacaaaataa
      121 gaaaaaatga aacaaatata aatccaatcc atgctattga aaaaatatta gaaaaaatca
      181 aatccttgtt gaaatcagga ataaaatggg cattgaaaat ataatactca gttaaaatcc
      241 aagctcccaa agcaaaactt acaaaaataa tactagtgct tatcacccct aaatattttt
      301 ttaaaaagtc cattatcaaa aaaaattgtt gcttaaggtt ttttaattca ttgatgtttt
      361 cttgattcat aatctgcctt ataaaaaaat gattttacac aaaaatactt tttcaatcct
      421 ttaaaaaatg ctttaatatt aaaaatttta aaagattttc aaggctaaaa agccttgagt
      481 ttatactttg cgtctttgct ctaagcaagg caaagttttt cttagttgag cgatttcttc
      541 taaatcaatt tgaacaaagg ctagagcttc ttcttcaccc attttgataa gttctatgcc
      601 caaaggactt atgagtgctg attctcctgt gtagatattt tttgtttgag aacaagcgca
      661 taagaataca gtattttcca aagctctagc gcgagaaagt aaagaaaaat gctctttttt
      721 aagctttcca tctacccaag ctgtaggcac taagatgagt tttgcacctt gtaaggctaa
      781 gcttctagcg atttctggaa aacgtagctc ataacaaacc atcatgccca ttttacccca
      841 aggcgtataa aaagctttga tgggattttg tccttcttct atatccttgc tttcattata
      901 agaaaaggca ttgtaaagat gggttttatg atatttgtga agaatttttc ctgaattgac
      961 aaaaagcaca caatttttaa ccttgattgc gcctttttca aaaaaaccaa aaaccacagc
     1021 aagttttaat ttttcactct cttttagtat ggtttgaacg aattcatctt gtatatcttg
     1081 agctatatct tgaaaattca cactcccatc acttggcaca aaggccatgc aagtttctgg
     1141 aaaaactacc aaatgagcct cttgtttttt ggtctcattt aaaagtttta aaattttttc
     1201 taaattttct tgccatttag ggcttgtttt aatttgtgct agtgcgattt tcatcatatc
     1261 ttaatatttg tttaatcttg ataaaaagct tactctttca gtatcatgat ggtttgaaat
     1321 ttgatacgca tttgaagcta aagaagcgat tttttcttta tcttgcgtgt ctaagctaaa
     1381 atcaaaaaca ttaaaatttt gtttcattct gtctttactt agagtttttg gtatcacggc
     1441 gatttctctt tctatgagcc atctaagaac gacttgagct acgctttttc catgctttgc
     1501 accaatttgc tgcaaagtga tattattaaa aagattatta tgcccttcag caaaagaagc
     1561 ccaaacttgc atgataatac ctagcttatt catagtattt tgagccgagt tttgttgata
     1621 aaaagggtgg cattctactt gatttaacat gggtttgatt tcattgtgta agcaaaaatc
     1681 aacaagacga tcagggtaaa aattgctcac acctatggct ttactaagtc cttctttata
     1741 aatttcactc atcacacgcc atgctccata agtatcatta aaaggttggt gtatgagata
     1801 aagatcaata taatcaagcc ctaatttttt aaggctttct tcaaaggcct tttttgctag
     1861 cttttcgttt gttttatcca cccaaagttt agtggtgata aaaagttctt cgcgttttat
     1921 cccgcttgct ttgattgcag atcctacggc ctcttcatta ttataaattg aagctgtgtc
     1981 gataagacga tatccaacgc ttaaagcatc ttctacgcaa gcttgggggt ttttttagga
     2041 tcgatttgaa atactccata acctaaaata ggcattttat taccatttgc taaagttaaa
     2101 tattgcatat tatctccttt aatcataatt gtttatatta tactatgcaa ggctaataaa
     2161 ttttaaaaag ttattatttc tcaagcaaaa atttttttca agtgtagttc atactcgttt
     2221 agatattttt ccacttgagg attttttacc acatcattac acataaaagt tggtaaagct
     2281 ttcataccta taaattcatg agccttatgc aaatgccaat acaccatatc tacacccttt
     2341 ccttcaaaaa attcattttt atcattaaag gcttcaagag gtgcattcca agtgagagaa
     2401 aacatgtatt ttttaccatg atctaaacca ccttttccgt agtttttact aggattttca
     2461 tgagttcttc catcattttt aaaaagcact ccagcaccca aaccaaacac ttcatcgata
     2521 tattttttaa ctatccaagg ctcgcccatc caccaagctg gcatttgata gatcacagca
     2581 tcagctttta taaatttttg tatctcttct ttaggatcat atccttgatc tatgtgagtt
     2641 tgatctactt cgtatcctaa tgtttttaaa atttctaaag catgattatg caatgtcaaa
     2701 ttaagttgtc cttttgaatt tccaaattct ttagcgccat taagtaagag tatatttttc
     2761 atttttatcc ttttttaaat ttatgataca attataactt agcataatat cattttcaat
     2821 acagaaaata aagtaatata ctatactaaa ggaatgttaa atgactaaag agaattctcc
     2881 gtgcaatttc gaagaatgtg gatttaacta tactctagca ttaattaatg gaaaatataa
     2941 aatgagtatt ttatactgct tatttcgcta tgaaatcgta cgttataatg aactcaaacg
     3001 ctttttaagc tccatatctt ttaaaacttt aaccaatacc ttaagagagc tagaaaacga
     3061 tggtttgatt atcagaaaag aatacgctca aattccaccc aaggtagaat atagcttatc
     3121 caaacgtgga caaagtttaa ttcctatctt acaagcaatg tgcgattggg aagaagaaaa
     3181 taaaaaatta caaggaaaat aaatgataaa aactataaaa attttagcat ttttagccat
     3241 ttttgcattt gctttaagta ttgctttatg cttttattta ttttttgatt attttataga
     3301 agaaagaaat attattattt tgacattgat ttttataagt atgatttgtg gaattttact
     3361 ctatttttta aatattattt tgctttcttt caagcttaaa agcataagct ttgctttaat
     3421 ttttttagga tttttatttt gtgttttagc aagttttggt ttttatcaat gttatataga
     3481 atataataat tttttatttt cacaaacaaa aggaaaatta gcattttatt tttgtgcatt
     3541 ttttaccact cttgctttta ttttaggcta ttttcatttt aaaacaatgg ctaaaattag
     3601 ttcttggaac gagtttttat ttgtatataa attttttatg gtggctttga ttgtaagtta
     3661 ttttaacgcc ttttttggct tttttatgtt gggcgctagt gcgattttgc ttttcatttc
     3721 ttggtataat ttcaagactc ttaaagagtc ttgaatttac tcatctctca tatcaatgac
     3781 atagcgaaat ttagcctttc ctgaggttag attttcataa gctttgtcga tatcttttga
     3841 agtgatgagt tcagtttctg gataaatttc atgttttaaa gaaaaatcaa gcatttcttg
     3901 agtttctgcg atcccgccga ttagcgaacc atagactttt ttacccgctt tatgtacaaa
     3961 ggttatcacg ctgatacttg gagcaacttc gtgaggtggc aaacccacta tcgccatttc
     4021 accgccaaat ttaagcaaat ccatataagc actaggatca taaggagttg ggatggtaga
     4081 gatgataaga tcaaagcgtt cttttacagc atttttatct gtgcttgtat aaaaagaact
     4141 cacgcccata gccaaagcat cggctttttt gttttcattt ctagcaaaaa cgctaacctt
     4201 tgcacccatt ttaacagcat atttaaccgc catcatacca agtccgccaa atcccgctac
     4261 tgctacgctt gagccttctt tgatatttga aaatttaagc ggagaataag tggtaattcc
     4321 tgcacaaagc aaaggcgcga ctttttccat cggtgcatct tttggcacac aaacggcaaa
     4381 tttttcactt acaactatgt tgtttgagta gcccccataa gtgttttcat tgccatgaaa
     4441 tacatcacaa ctattgtaag taaagatggt tttgccattt tcgcaaaact gctcttgtga
     4501 gcgtttgcaa gcatcgcact caccgcatga atttaccata caaccaaccc ctgcgtaatc
     4561 tcctacttta aatttactca catttttacc cacagcgata acttctcctg ctatctcatg
     4621 cccaggcacg caaggataag tagcttctcc ccactcgctt cttgcggtgt gaatatcgct
     4681 atgacaaatg cctgcatata ggattttaat caaaatatca ttatcgccaa tagcatggcg
     4741 gctaaattca aagggtgtaa atttcgcatc cttgctaagc attgcatagc ctttacttgc
     4801 gatgcgattg ttttctaaaa ttttgtattg catttttgct ccttttttga tttttttata
     4861 attataaaac attagagtag ctataagtca agagtgaaaa taatttttta aaaattagta
     4921 taaatgctat aattataaaa tttaatttca ctttggggta aaaatgcaaa atttgtattc
     4981 agaagatgat actagagtaa aatttataga tgcaaagctt tatgatagtt cttggaatga
     5041 agaaaatata aaaagaaatt attattttac agatggtaga aagcttttag gtggtaaaag
     5101 agcacaaaga aaatttgcag attatttgct tagatatgaa ggaaacaacc ttgctataat
     5161 agaagctaaa aaatttagta aagatccttt agatggttta tctcaaggca tagaatatgc
     5221 aaaaatttta aatgtgcctt ttgtatatag tagcaatgga gaaaaaattt atgaatacaa
     5281 tataagaaat catagtggta aatatataga taaattccca agtcctaaag agctttttga
     5341 taggatttat ggcaatgtca aagaatggca atacaagctt ttaacccaaa atgttatgta
     5401 tataccgcaa aaagaattaa gatattatca aaaaatagca atagataaag tcatagaagc
     5461 cattataaat aacaaaaata gaattttact cactcttgct acaggcacag gaaaaacaac
     5521 catagctttt aatttgtgct atcgtttgtt agaggcaaga tggaataaag aaaacaaaga
     5581 tcaaaagcct aaaatactat ttttatgtga tagagtgagc ttaagagatc aagccttagg
     5641 agaatttaat cctatagaaa gtgattgtaa ggcaattagt gctgaagaaa taaagaaaaa
     5701 tgatggaaaa atcataacaa atgcaaatat tttctttgga atttatcaaa gcttagccgc
     5761 aaattcaaaa gaacaagaaa acacccaaga agaacaagag agcaaatttt atcttcaata
     5821 cccaaaagat ttttttgatc ttatcatcat agatgagtgc cacagaggtg gagcaaacga
     5881 agaaggaagc tggagagctg tacttgagta tttttcttat gcgactcagc ttggtttaac
     5941 cgctactcca aaaaaagaag aaaatataga cacttatgag tattttggtg agagtgttta
     6001 tgattatagt cttaaaagtg gtattgaaga tggattttta accccttata aagtcaaact
     6061 cataaaaaca actttgagtg atggttatac ctataatcct gatgatttga tacaaggtga
     6121 gcttgaaaaa ggcttttata aacaaagtga atttgaaaga aatatctttt taccaaacta
     6181 taatgacttt atcgctaaga aaattttaga gcttataaat cctatggata aaaccataat
     6241 tttttgtgca aatcaagctc atgcaaatga agtaaaaagg gctatagata aatataaaag
     6301 cgttaaaaga gatgattatt gtgtaagagt tacgagtgat gaaggtaaaa tagggcttga
     6361 ttatctaaaa ttgtttcaag ataatgacaa aagctatcct gtcatactta ctagctctaa
     6421 aatgcttaca actggagttg atgcaaaaaa tgtgcgaaat atagtattgc tagcaaatat
     6481 aggttctatg gtggaattta agcaaatcat cgggcgtggc actagggttt atgaaggcaa
     6541 agactttttt accatacttg attttgtcgg tgctactaag cttttttatg atccaaaatg
     6601 ggatggtgaa aaaatagaag aattaaaaga gcaagatgaa aaagaaaaaa tcactaaaga
     6661 gcatataaaa caaacaaaag aagaaagcaa agaaaaaaag agcgtaacca tacacttaaa
     6721 aggcacaaaa cttaaggttt tagatatcac aactacttat gtaggagcac aaggtaagcc
     6781 acttagcact aaggagtttt tggaattttt gataggaaag cttggtgagt attatgatga
     6841 tgaagcaaaa ttgcgtgaaa tttggagtga tcaaaaaaat agagaaagat ttttaaaagc
     6901 ccttgcaaat gatggagtag atgaagatgc tttaaaagat ctaagagaaa tttttcaaaa
     6961 agattgtgat atatacgatg ttttagcgca tttaagcttt aatgccgaga taaaaacaag
     7021 gcaagagcgt gttttacaag tagaaaatgg tgagttttta aaacgctttc aaaaagaaaa
     7081 ggctataaaa tttatagaat ttttactaaa tagatatcaa gaatacggca taaaagattt
     7141 tgatgagggt ttaaaaccac ttatagaact tagttcttta ggtagtgtta gagaattggc
     7201 cgatgaattt ggtggcttag aaattctaaa acaaagc
//
LOCUS       DAPIWU010000084         7174 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.084, whole genome shotgun sequence.
ACCESSION   DAPIWU010000084 DAPIWU010000000
VERSION     DAPIWU010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7174
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.084"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..3231)
                     /locus_tag="RJ285_001401"
     CDS             complement(<1..3231)
                     /locus_tag="RJ285_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDV7384154.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLHEMLSKNSKALRVVDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNESF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLTELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQIYATKA
                     RLIDMMDFEKVEFNKAISLNPKTQREEIKSQYPLVKLKICGDFFMGGTPSRKNINYWN
                     GDIKWLTISDYSNRQVIMDTKEKITREGFKNSNAKMIQKGAVVVSIYATIGRVGILGE
                     DMTTNQAIVAIIPNEEFINKYLMYAIDYFKFQLYNEVITTSQQNINLGILQNMVIPKP
                     PLEIQKQIVAECEKIEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDNQ"
     gene            complement(3240..5450)
                     /locus_tag="RJ285_001402"
     CDS             complement(3240..5450)
                     /locus_tag="RJ285_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HDV7384155.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTIPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLARGGFNHAIKAKIIGRSNGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLVKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTSKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGAGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(5440..5790)
                     /locus_tag="RJ285_001403"
     CDS             complement(5440..5790)
                     /locus_tag="RJ285_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384156.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(5783..7081)
                     /locus_tag="RJ285_001404"
     CDS             complement(5783..7081)
                     /locus_tag="RJ285_001404"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDV7384157.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLGDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMRIENFKPFTSFELKNLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQQYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYTAGEEPIGLDLEAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
BASE COUNT         2282 a         1239 c          899 g         2754 t
ORIGIN      
        1 ttgattgtcc tctataatac cacatttttg aagcattgct ttgattaggt tttgatactc
       61 ttttatactc aaacttaaag tattatactg ctcttctatc ttttcacact ctgctacgat
      121 ttgtttttga atttcaagcg gtggttttgg aataaccata ttttgcaaga ttcctaaatt
      181 tatattttgt tgcgaagttg taataacttc gttatataat tgaaatttaa aataatcaat
      241 agcatacata agatatttat ttataaattc ttcatttgga ataatagcta ctatagcttg
      301 atttgttgtc atatcttcgc ctaatattcc aactctacca atagttgcat aaattgaaac
      361 aacaacagca cctttttgta tcatttttgc attagaattc ttaaaaccct ctcttgtaat
      421 tttttcttta gtatccataa taacttgacg attagagtaa tcgctaattg ttagccactt
      481 aatatcccca ttccaataat ttatattttt tcttgatggt gttcctccca tgaaaaaatc
      541 tccacaaatt ttcaatttaa ccaatgggta ttgagacttt atttcttctc tttgagtttt
      601 tggatttaaa cttatagctt tattaaattc cactttttca aaatccatca tatcaataag
      661 ccttgctttt gtagcataaa tctgcaattc ttgcgggata acatcaagcg tatttaaaaa
      721 agatttgtag attaaagtat taagcttggt ctcattttgt ggattgcctc tttcaaaaag
      781 tgggctcaaa taaggctcgt gcaattcttt taaaccttca tcaccttttc tattactcca
      841 ctcataacct aaaaatttct tttgttcttt tatatcactt ggggatttta tgattaaaac
      901 ttcttgatta agacttagac taaaataaag caatttatcc ttttctattg cctgagcata
      961 agctaaaaag gctttatctt ctaaatcttg cttatcttta ctttctttat aaattttaga
     1021 ttctttaagt tttttataat cacttgtttg cctaaatgca ttgcgataat ctttaaaggc
     1081 ttctagctct gtgagtttag aatctaagtt tccatttaaa aaattgctat aaagctcttt
     1141 atcaaatttt ctaaaatcac aatacgcact tagataattt tgataaaagc tttcattgtc
     1201 ttttaaattt tcagcttcta tgcgttcttt aatcaaacta taatcttgag aaataagatg
     1261 attttcttgt ttaaaagttt cttttttgcg taaaaataaa ataatcgtat ttgtccctgt
     1321 tgctccaaat gtttgattac ctagctctac aatggcaata aaatcaaaat tttgaaataa
     1381 tatttctctt gtatttttat aaatagaatc tttatttaaa atagaacttg gtaagataat
     1441 agcagcttta gcattatcat ttaaaatttg atttgctcgc tcacaaaaaa agcattcgat
     1501 agaattattt gtttctatgt ttatatcatc gttgaaaagt ttataagtat ttttagattt
     1561 atcacttaaa gtttctaaaa atccttttac agaataaggc ggatttgcta taagcaaatc
     1621 aaaactattt gattctattt gtggttttgc tttttctcct tctaaattat ttgtatttgc
     1681 taattcaaaa gaagcaagtg catcagcgta taaaatattg atttcatttt gcccatacat
     1741 tgcacttgat accttagaaa ccttacttaa gcgatactct ttttcaatac cataaatatt
     1801 tttataatgc tctttaagct catcttctgt tagataacgc ttaagctcat tggcataggt
     1861 gtttaaaaaa tgtccagcac cacaagcata atcaaccacc cttaaagctt tagagttttt
     1921 gcttaacatt tcgtgaagcg gtaaagaata cataataaat tcacaaattt gaataggggt
     1981 aaaaaactga ccttcgtctt gcttcatacc tttttgcaaa aaaagttcaa aaagattgcc
     2041 taaaaattga tttgtagagt tttgagtaag cttgtaattt gcaaaaagct ctactatttc
     2101 ttttaataca agtgcatttt ttaagaataa ttctttatta tgcacttcta aaaatgcaaa
     2161 atcattattt gaataaaatt ttaattcttt gatgtaattt tgcattactt cttttaaagt
     2221 ttttatcttt aattgcttaa agtctttttc tatatcttca ttagatacaa aggtaatttt
     2281 ctctcctaag aattctttca tagcttcttt ataaagccac attaatctat cttgcatatt
     2341 tgcataagta tctgccatta caccaaaata tccaaatttg agattgtttt tattaaaagt
     2401 ttcatcataa attttgcaaa gaaaaatatt tacaagttta tcaaaggcat tttccttgcc
     2461 tgatatatta tgcttgcgta aaatttttgc aaattcgtga tatttgcctt cttctttaag
     2521 ttctttaaga ttatcaaaag ttggagtaat ttctaaaatt ttataggcat tgacatttgc
     2581 ttcaaaaata ccttgtttaa aatattgcag ttcataactt tctttccaag ttttaaaaag
     2641 ttctatattg ttattagatt ttttataaga attttgcaat tccttttctt ttagatattc
     2701 ttcgttatcg taagcttgta tgatgtaatt tttatattct aacttatcgc taaaatcact
     2761 tgtataaaga caaagatatt ttacaccttt ttcttgctga aaataagaaa aaagctgtcc
     2821 gccatcttct tgcattctat tccattcttt tataaattca ctatttttag aatctgtggt
     2881 tttacattct ataatcaaat aaggattgtt ttcattatcc tttactaaaa tatcagcctt
     2941 accacctttt ttatccctgc caagattcca ttttggctct aactctaaat gttcagcctt
     3001 ataacctttt tctaaaagtc tatgcacaca ttcaaaaact acaaaatttt cagggtgtga
     3061 aaaattagaa gtagttttat cgtgaatttt tatttctttt ggataattaa tactttggtt
     3121 tttataatct attaaaagag tgtaattatt gattgttttt acataatttt catttttatt
     3181 tttaaagcct aagttttcta aaacttgttt taaattatct tttgtaatca tttatttcct
     3241 tataatctta ccaccttagc accaaagcca ccttgattga tcggtgcgtc attaaagccc
     3301 ttgacacttt tatgagtttt caaaaactct cttacagcaa aggcaagctt tcctgctcct
     3361 ataccatggt aaactaaaac ttcatcaaag cctgcaagca aagcatctga aataaattta
     3421 tcaagccttg aaatagcttc atcactccta agcccgtgca aatccaagct aacactaaga
     3481 ttagtcggtt ttgccacact aatgcttgtt tttggactta ttttagatgt aggagtgctt
     3541 tttttaagca gttttaaagg cacacgaagt ttgatcccat cactttcaac catagcatcg
     3601 tttttagaaa tgcttatgat tttaccctta attttttcat attttacaaa atcccccaca
     3661 cgcaattctt cgttttgctc catacttggc aagatgattt cttttttaag ttcattggct
     3721 ttattaagac ttctttgctt gtcttttata tctttaagct gtatggtttt tttagcttct
     3781 tctatggctt tgtgaaattt aaattctaaa tttctcaaac tcgtacgaaa ttcttgttca
     3841 tttttttctt tttgctcttt taaggaaagt aaaatttcat cgactttttg ctcttttttc
     3901 tcgacatttt caagcttagc ttttagttct aattcaagat tgatattttt acccacaagc
     3961 tcttctaaat tttctttatc ctcgccataa agctttttag cctcgctaac taaattcggc
     4021 ggaatctgat aacgcaaagc ggtttcaaag gcataagatt ttcctatggt gccttttaaa
     4081 aactcgtatt ttgggcgtga aagctcttca tcatataagg cagcgatgag ttcaacttgc
     4141 tcattctttg ctaaaagcat ggcaaggcgt ttgtggtgtg tagtaatgat gattttaaga
     4201 ttattagcta tgagttttga aattaacaca ctatacaaac aagccgcttc ttcaaaatct
     4261 gttccaagct ctatttcatc gatacctaaa agcaaatttt tcctagaaaa aagtctagaa
     4321 aaatgcaaca ttcttcctgc aaaagttgaa atgtcgtttt taacattttg cggatcttct
     4381 atgatggcat caaattcttt aaaagtaccg attttacttt cacttgcttt tatatgcata
     4441 ggcaaaagat gtttagctaa aaatgctgcg cttagcatgg attttaaaag catggatttt
     4501 ccgcctgcat ttacccctgt gatgattaaa acttgttttt taaattccaa actcacgctt
     4561 tttggatttt ttaaggcagg atgagcaaaa tttttaagca ctaaatccgt actttgatca
     4621 cacaaaacaa attcaaaatc ccttttttta gcaagcaaaa ccctagcact ataatgatca
     4681 aaaagatcaa aggctgtatt gataaatttt aaaaaaggta gattttttac taaaaaagct
     4741 gagaaatttt tagcgtattc ataataaatt tcttcttttt gatttttgat tttttctata
     4801 tcattttgca aattttcaac acttaaaggc acgatataaa agccaccgcc attacttctg
     4861 cctatgattt ttgctttaat agcgtgatta aacccgcctc ttgcaagcaa ggcttcaaga
     4921 ttgtttataa gatggatttg tgtatcgata agataaggca ttaaagcttt tgtatagcaa
     4981 aatttcttaa actcagctat tatgctttca ttttttaatc ttagagcggc attaagattt
     5041 acaagtcttt catctaaact ttcttttaac tccccttttt catcgaaatt caaacaaagc
     5101 tccaaagccc cgctaacaaa ttctatcttt tgtagccaag agtctaaatt tgttcctagt
     5161 tttatttttt ttaacttttc aaaataacga aaaattttta caaattcaaa aatttcatct
     5221 aaatgcaaaa ttccttgctt acttaaatga accaaggctt tatcaagatt gctaagctct
     5281 ggtatagtag gaaattccac ctcgcaaagc tcatgtatac gtttaaaatg aagattagaa
     5341 tctccttgca aaaaaatctc cttatctctt gcaaaaaggg ctttaaactc ttctaaatag
     5401 ctgtttaaat caagctttga gatcaattct tcttttgtat cattcatcat ttaacctaca
     5461 atctttaata tctatgatta aagaattaaa actttgatta ttatcctttg aaataaaact
     5521 tcctgtacca aattcataat taaaatacgc cttagaaaca ttgatatctt tacataaaat
     5581 atttttattt tgattaaaag ctacgataat atctgttctt aaatgacttt tttgcgtgtt
     5641 ttcaaattca aaaaataccg ctaaaacaat aaaaatcaca agtaaaatac caaaaaaagg
     5701 tttagttttt ttgcctaatt tttcacgcaa agcaaaagtg attaaggcta aaattaaaat
     5761 aattaaaaaa tataaaaaaa acctactcat ttttttgcct taatttatta ctgatatctc
     5821 ctgcaccaaa acctataata agcccttctt caaaaacttg ccccttagaa gctaccaaaa
     5881 atttaccctc tcttttgata tcttctacaa ataaagcctt aggaaaaacc gcttctaaat
     5941 caagccctat aggctcttct cctgcagtat aaacaggtaa aattataagc tcgtctacac
     6001 cttcaaaagc ctttgcaaat tcctttaaat ttgcagccaa acgcgtgtag cggtggggtt
     6061 caaagatagc tgtgattttc ttatatccgc ctaattttgc gtattgttgt gctgcactta
     6121 aagtcgcttt tatttcggtg ggatgatgac cataatcatc gattaaaacc aaattttcat
     6181 cagcatgtaa aatatcaaaa cgctttttaa taccttgata atttttaagc ctagttctta
     6241 tcgtttctat atctaagaaa tttaaagccg ccaaaatcgc caaagacgca tcaagggcta
     6301 aatgatatcc catgccaaaa accttaaatt cacctaaatt tttcaactca aagcttgtaa
     6361 aaggtttgaa attttctata cgcatggtgc agtttttgat atctttgctc ggataaagct
     6421 tggttgactc atttttataa tttttcaaaa actcatcttc agcattaatc acgcgaattt
     6481 tagccgtatc taaaaactcc gcataagcat gatggagttt tgaaacttca ttgccataat
     6541 gatctaaatg ctctgcttct gcattagtaa ctatagccaa ataaggattt gaatttaaaa
     6601 aagaactatc gctctcatca gcttcaaaaa caaggttttg gctttcttta taaatcatat
     6661 ttgaaccaaa ttcttttaaa atcgctccga tgatcacaga agcatcacca agcaaagaag
     6721 ccaaaatact tgaagttgtg ctttttccat gtgctcctgc aactgcaaaa acgcgcttat
     6781 cttctaagat aagaggtaag gcctccttgc gtgaaaggca tttaatgcct aattctttag
     6841 cgtgtttaaa ttcaggattt tcttctttga tagcagcaga ataaataact aaatctttgt
     6901 ttaaaatatt gtctttatga tgagggatac tgaccttaac cccttctttt tctagttctt
     6961 tagtgatttt actctcttta agatcacttc cgctaatttt aaaacctttt tcttttaaaa
     7021 atcttgctaa agcggaaatt cctataccgc ctatgccgat aaaatggata ttttgcatca
     7081 tttaaacctt tatactttaa aggctaaatt ttagcacttt tttactaaaa agaaaatata
     7141 aaccttagct tctatcagct ctagataact ttta
//
LOCUS       DAPIWU010000085         7148 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.085, whole genome shotgun sequence.
ACCESSION   DAPIWU010000085 DAPIWU010000000
VERSION     DAPIWU010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7148
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.085"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(62..544)
                     /gene="ruvC"
                     /locus_tag="RJ285_001405"
     CDS             complement(62..544)
                     /gene="ruvC"
                     /locus_tag="RJ285_001405"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDV7384158.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            640..1962
                     /gene="dnaA"
                     /locus_tag="RJ285_001406"
     CDS             640..1962
                     /gene="dnaA"
                     /locus_tag="RJ285_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDV7384159.1"
                     /translation="MNPSQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQNNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKILVKSQS"
     gene            2122..3189
                     /locus_tag="RJ285_001407"
     CDS             2122..3189
                     /locus_tag="RJ285_001407"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDV7384160.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMRLYF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            3218..5527
                     /gene="gyrB"
                     /locus_tag="RJ285_001408"
     CDS             3218..5527
                     /gene="gyrB"
                     /locus_tag="RJ285_001408"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDV7384161.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(5553..5894)
                     /locus_tag="RJ285_001409"
     CDS             complement(5553..5894)
                     /locus_tag="RJ285_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HDV7384162.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(5897..7135)
                     /locus_tag="RJ285_001410"
     CDS             complement(5897..7135)
                     /locus_tag="RJ285_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HDV7384163.1"
                     /translation="MKQNNQKEDRRNFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLLPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YISNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNIYGV"
BASE COUNT         2644 a         1073 c         1131 g         2300 t
ORIGIN      
        1 tttaaaggta ttttgggagt ttatgaagct ttgggctttt gtgtaataaa aattactaaa
       61 atcacaccct aactcttaaa tttgctgcat gggttaaagc tactgcaata gcatctgtga
      121 tatccaaagg cttgatatct ttactaagtc ctaaaagcct ttttaccata aaagcaactt
      181 gttctttagt tgctttggct tttcctgtaa cggctttttt tacttgtaag ggagtgtatt
      241 ctgcaaaatc tccatgaatt tgaagaattt ttaaagatag ggctccgcga aattgtgcga
      301 gttttaaaac ggtttttgga ttgtaagcaa aaaagatatc ttctatagcc acttcatcaa
      361 aagaatgatt tttaaaaatc aagtccaaac cctcgcaaag ctctgtgatt tgatactgta
      421 aggtacttgg ctttatcttt ataagtcctg cttctatgag aatgtttttt cctttgtcag
      481 cttctatgat agcataaccg caatttcttg aacctggatc tatacctaaa attttcaaat
      541 tcataccttt tgaaaaataa aatacaaaag cggattttaa ccttttttta tgaaatttaa
      601 gataaaattt atacattatg caaaatttaa agagagatta tgaatccaag ccaaatactt
      661 gaaaatttaa aaaaagaatt aagcgaaaac gaatacgaaa actatctatc aaatttaaaa
      721 ttcaacgaaa aacaaagcaa agcagatctt ttggttttta acgctccaaa tgaactcatg
      781 gctaaattca tacaaacaaa atacggcaaa aaaatcgcgc atttttatga agtgcaaagc
      841 ggaaataaag ccatcataaa tatacaagca caaagtgcta aacaaaataa caaaagcaca
      901 aaaatcgaca tagctcatat aaaagcacaa agcacgattt taaatccttc ttttactttt
      961 gaaagttttg ttgtagggga ttctaacaaa tacgcttatg gagcatgtaa agctataaca
     1021 cataaagata agcttggaaa actttataat cctatctttg tttatgggcc tacaggactt
     1081 ggaaaaacac atttacttca agcagttgga aatgcaagct tagaaatggg aaaaaaagtt
     1141 atttatgcta cgagtgaaaa ttttatcaat gattttactt caaatttaaa aaatggctct
     1201 ttagataaat ttcatgaaaa gtatagaaac tgcgatgttt tgcttataga tgatgtgcag
     1261 tttttaggaa aaaccgataa aattcaagaa gaatttttct ttatatttaa tgaaatcaaa
     1321 aataacgatg gacaaatcat catgacttca gacaatccac ccaacatgct aaaaggtata
     1381 accgaacgct taaaaagtcg ttttgcacat gggatcatag ctgatataac tccacctcaa
     1441 ctagatacaa aaatagccat cataagaaaa aaatgtgaat ttaacgatat caatctttct
     1501 aatgatatca taaactatat cgctacttct ttaggggata atataagaga aatcgaaggt
     1561 atcatcataa gtttaaatgc ttatgcaacc atactaggac aagaaatcac actcgaactt
     1621 gccaaaagtg tgatgaaaga tcatatcaaa gaaaagaaag aaaatatcac tatagatgac
     1681 attttatctt tggtatgtaa agaatttaac atcaaaccaa gcgatgtgaa atccaataaa
     1741 aaaactcaaa atatagtcac agcaagacgc attgtgattt acctagctag ggcacttacg
     1801 gctttgacta tgccacaact tgcgaattat tttgaaatga aagaccatac agctatttca
     1861 cataatgtta aaaaaatcac agaaatgata gaaaatgatg cttctttaaa agcaaaaatc
     1921 gaagaactta aaaacaaaat tcttgttaaa agtcaaagtt aagtgaaagg atgtgaaaaa
     1981 taaattctag agtgtgaaaa aaagaaatta agcaaagtat gataaaatac aaatttgatt
     2041 attttgcttt gaagaatttc acaatttcaa caagcttatt attacaacga atttaaaatt
     2101 aaaataaacc aaggagaaaa aatgaagtta agtatcaata aaaatacttt agaatctgca
     2161 gtgattttat gtaatgctta tgtagaaaaa aaagactcaa gcaccattac ttctcatctt
     2221 ttttttcatg ctgatgaaga taaacttctt attagagcta gtgattatga aataggtatc
     2281 aactataaga taaaaaaaat ccgcgtagaa tcaagtggtt ttgctactgc aaacgcaaaa
     2341 agtattgcag atgttattaa aagcttaaac aatgaagaag ttgttttaga aaccattgat
     2401 aattttttat ttataagaca aaaaagcaca aaatacaaac ttcctatgtt taatcatgaa
     2461 gattttccaa attttccaaa tacagaagga aaaaaccaat ttgacattga ttcaagtgac
     2521 ttaagtcgtt ctcttaaaaa gatattacca agtattgata caaacaaccc aaaatactcc
     2581 ttaaatggtg catttttaga tataaaaaca gataaaatta acttcgtagg aactgataca
     2641 aaacgccttg caatctatac tttagaaaaa gcaaataatc aagaatttag ttttagtatc
     2701 cctaaaaaag ctatcatgga aatgcaaaaa cttttctatg aaaaaataga aattttttat
     2761 gatcaaaata tgcttatcgc taaaaatgaa aattttgaat tctttacaaa acttatcaat
     2821 gataaatttc cagattatga aaaagttata ccaaaaactt tcaaacaaga actcagtttt
     2881 tcaactgaag attttataga tagtcttaaa aaaatcagcg ttgtaactga aaaaatgaga
     2941 ctttatttta acaaagataa aatcatcttt gaaggtataa gtttagacaa tatggaagca
     3001 aaaacagaac ttgaaattca aacaggagta agtgaagaat ttaatcttac tataaaaatc
     3061 aaatatttac ttgatttttt aacttctata gaagaagaaa aattcacttt aagtgtaaat
     3121 gaacctaatt cagcatttat agtcaaatcc caaggactat caatgattat catgcctatg
     3181 attttgtaat aaaacaagta aaagataaag gaaaaatatg caagaaaatt acggtgcgag
     3241 taatattaaa gtcctaaaag gcttagaagc tgttagaaaa cgcccaggta tgtatatagg
     3301 agatacaaac ataggcggac ttcatcatat gatttatgaa gttgtggata attctatcga
     3361 tgaagctatg gcaggacatt gtgatactat agatgtagaa atcactactg aaggaagctg
     3421 tatagttagt gataatggtc gtggtattcc tgttgatatg cacccaactg aaaatatgcc
     3481 aactttaact gttgttttaa ctgtcctaca tgcaggggga aaattcgata aagatactta
     3541 taaagtttca ggcggtttgc acggtgttgg ggtttcggtt gtaaatgcac tctctaaaaa
     3601 acttgtagct acagttgaaa gaaatggaga aatttatcgt caagaatttt cagaaggtaa
     3661 agttatcagt gaatttggtg tgataggaaa aagtaaaaaa acaggaacaa ctatagaatt
     3721 ttggcctgat gatcaaattt ttgaagtgac tgaatttgat tatgaaattt tggctaaaag
     3781 atttcgtgaa cttgcatact taaatccaaa aatcactata aattttaaag ataaccgcgt
     3841 aggcaaacat gaaagttttc actttgaagg tggaatttct cagtttgtta cagacttaaa
     3901 taaaaaagaa gctttaacta aagcaatttt ctttagcgta gatgaagaag atgtgaatgt
     3961 tgaagtagct ttgctttaca atgatactta tagtgaaaat ttactctctt ttgtaaataa
     4021 tatcaaaact ccagatggtg gaacacacga agctggtttt agaatgggtt taactcgtgt
     4081 gataagtaac tatatagaag caaatgcaag tgctagagaa aaggataata aaatcacggg
     4141 tgatgatgtg cgtgaaggtt tgatcgctat tgtgagtgta aaggtgcctg aaccacaatt
     4201 tgaaggacaa accaaaggaa aacttggttc aacttatgtg cgtcctatag tttcaaaagc
     4261 aagttttgaa tatttgacta aatattttga agaaaatcct atcgaagcta aagctataat
     4321 gaacaaagcc ttaatggcag ctagaggaag agaagcagcg aaaaaagcta gagaattaac
     4381 gcgtaaaaaa gaaagtttaa gcgtaggaac tttaccaggg aaattagctg attgtcaaag
     4441 taaagatcca agtgaaagtg aaatttatct tgtggaaggg gattctgcag gaggttctgc
     4501 aaaacaaggt agagaaagat cttttcaagc tatattgcct ttgcgtggta aaattttaaa
     4561 tgttgaaaaa gcaagattag ataaaatttt aaaatctgag caaattcaaa atatgattac
     4621 cgcttttggc tgtggtatag gtgaagattt tgatctttca aaacttagat atcataaaat
     4681 catcatcatg acagatgcgg atgttgatgg atcacatata caaaccttgc ttttaacttt
     4741 cttcttccgt tttatgaatg aacttgtagc aaatggacat atttatctag cacaaccacc
     4801 tttatatctt tataaaaaag ctaaaaagca aatttattta aaggatgaaa aagctttgag
     4861 cgaatacctg atagaaacag gaatagaagg tttaaactat gaaggtatag gaatgaatga
     4921 tttaaaagat tatttaaaaa tcgttgcagc ttatcgtgcg attttaaaag atcttgaaaa
     4981 gcgttttaat gtgatttctg tgatacgcta tatgatagaa aattcaaatt tagttaaagg
     5041 aaataatgaa gaattattta gtgtaatcaa acaattttta gaaacacaag gacacaatat
     5101 cttaaatcat tatatcaacg aaaatgaaat tcgagctttc gttcaaactc aaaatggctt
     5161 agaagaactt gtgatcaatg aagaactttt cactcatcca ctatatgaag aagcaaatta
     5221 tatttttgat aagattaaag atagaggctt ggaatttgat aaagatattt tagaagttct
     5281 tgaagatgtt gaaaccaatg ctaaaaaagg tgctactata caacgctata aaggtttagg
     5341 ggaaatgaat cctgagcaac tttgggaaac cacaatggat ccaagtgtaa gaagactttt
     5401 aaaaatcact attgaagatg cacaaagtgc aaatgatacc tttaatctct ttatgggtga
     5461 tgaggttgaa ccaagacgcg attatatcca agcacacgct aaagatgtaa agcatttgga
     5521 tgtgtaaatt tatcattgaa gaaatgattt cttcaatgag ttttgttttg taagagtata
     5581 gctagaggaa ttcttcttct tgtatcgtat ttttctccat aatatttttc aagataattt
     5641 aaaatttttt cttcatcttc aggttctatt tcccaaagtc cttcactatc ttgcatccat
     5701 cttatagctg ctaaccaagc ttttctactt gcatgcatat tagtaatgag attggatcca
     5761 tgacaagcta aacaatttgc ttccactaaa ggtgaatcag gatcgataat caatcctgta
     5821 tcagggttaa tttcaagatt ttgagcccaa cttgcactta aaaacaatgc taagatcaat
     5881 ataatttttt tcatacttaa actccataaa tattaactct atggcatgca ttattgatat
     5941 atcctcctgg attccactgt gctaaaacca taggttgact gttaccttga ctatcgatag
     6001 ctcttgccca aatttcataa tatccttttg ttggtattga tatttgagca ctccattttt
     6061 gccatgctaa tctatttaat ggtttttcta cctttgcttt agtccatgtt acgccataat
     6121 cattgcttat ataaacttca ctaacttcaa gttctccagc ccaagcttta cctctaactt
     6181 caaatttttt atttgctttt atttcagaac catttttgat attagtaatt acagatctta
     6241 taggcattga ttctatgatt ttcatctcgc ctttatagtt aaaatctcct ggttttaccg
     6301 gatttacagg aactttataa gaaccttcca ttttttcacc atcatgaatt ttatttctta
     6361 ctgaaatttt ataaagccat ttaccacttg tacttgcagg gtaaccacca caaacaagtc
     6421 taagtggata gccattgact aaaggaatat ctttgccttc ataagcccaa gctattagag
     6481 tttcatcttg taaagcttta gaaataggaa ctcctctact aataggtgaa gtttcttcac
     6541 catttaattt tgtatctatg ccataatatc cgatataaac cgcatcattt ttgatgccac
     6601 aatcttttaa aatatctttt aaacgcactc ctgtccatct accgcaagct actgcaccat
     6661 aaccccattg agttcctttt gtgctaggta taacttcgga tctaccattt ccaccgcatt
     6721 caactgttaa ggcataagta taggttttaa atttcttttt taaatcttct atggtgtaag
     6781 attttttatt gataatgctt tctccatcga tttctaaagt ccaacctttg tgaagtcttt
     6841 cttttatcgt ttctaggctt ggtagtaagc cattatttct aacaaagaaa ttttcaggtt
     6901 tggtaaaatc agaatcaaga gcataaattt cagtttctgc tgttaatggt ttttcgccat
     6961 ggtagataag atctttttta ccttctattt taaaatcagg caattctttt gccaaagcct
     7021 tacttcctaa aaaattctca aaagaaaaat ttgacaatac actgatgcca agcaaaccaa
     7081 atcctatatt ttttaagaaa tttctgcgat cttctttttg attgttttgt ttcattgaaa
     7141 tatcctta
//
LOCUS       DAPIWU010000086         6977 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.086, whole genome shotgun sequence.
ACCESSION   DAPIWU010000086 DAPIWU010000000
VERSION     DAPIWU010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.086"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..168)
                     /locus_tag="RJ285_001411"
     CDS             complement(<1..168)
                     /locus_tag="RJ285_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDV7384164.1"
                     /translation="MKKYHSLCPIETTLNLIGNKWKILIIRDLLQGTKRFGELRKSIS
                     FTKNQNISQNVL"
     gene            361..996
                     /locus_tag="RJ285_001412"
     CDS             361..996
                     /locus_tag="RJ285_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDV7384165.1"
                     /translation="MKIAILCASGKVGKEISKEALKRNLEPVCFVRNSSKMNEFLPQA
                     KIVQRDLFELDSKDLIDFDIIIDAFGEWENLSLHKKHIECLSVILQGSKAKLFVVGGA
                     GSLYMDENHTTRLMDMPDFPKEYLDIAKASAEVLEFLRNEKGFKWVYVSPSAIFSPDL
                     PKSNHYKIIGEKFEVNANNESKISYSDYASAMIDIVLNSCYENTRIGVISL"
     gene            1171..2346
                     /locus_tag="RJ285_001413"
     CDS             1171..2346
                     /locus_tag="RJ285_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7384166.1"
                     /translation="MKNLNKASSTQIILVFCLGVFGILSTELGMMGIIPIVSQNFSVS
                     ISDAGWCASIFALVITFCAPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVSEFWQL
                     LILRAIPAFFHPIYIALALSMVANLVEDKKEIPKATAKIFAAVSAGMVLGVPMTSYFG
                     GNFSFKMAMLFFVFLNTLSFIATLFFVPDFKKVNSVKISKQLLILRYPLLWISILCVI
                     CINAGIWGFYSYFSDFLHSVGKMNFTLISIVLAIYGFSNIIGNYIAGKTLVKNANFTL
                     ILTPLIMIGFYILLFSFYSEIILIIFAFILGILAGVMNNGTHFMISYPFPKAANFSNG
                     LFISVANIGLSTGTAICGLVISLSDTRYIIVNTIVLLILGIIMIFVRSRIEKMKLRF"
     gene            2404..2823
                     /locus_tag="RJ285_001414"
     CDS             2404..2823
                     /locus_tag="RJ285_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDV7384167.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGAHIALTGEKEGKNVEWLELVSDEEYENALKEARE"
     gene            2930..3682
                     /locus_tag="RJ285_001415"
     CDS             2930..3682
                     /locus_tag="RJ285_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDV7384168.1"
                     /translation="MQLRQKAREIFEKLLGAKKDQLFASDKEYFINHINFTFDESFIK
                     ANLDTQKYFLITLASTLAVGGKIGFKALLQGAIKNDISPIVIKEVIYQATPYVGFARV
                     CDFLSLCNKVFKKLNIALVLTPQGTTTQENRKIKGREIQNAIFSEANITKMIETTPED
                     KAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQS
                     RKDLLNIIAALIPYIGYPKALNALNLLDDIKK"
     gene            complement(3760..5244)
                     /locus_tag="RJ285_001416"
     CDS             complement(3760..5244)
                     /locus_tag="RJ285_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDV7384169.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNL
                     KDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKN
                     FKNDDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEK
                     LLKDMGSDGGNSGEFYTPRPLIKTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYK
                     NRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK
                     KITDITEKDKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCA
                     IIVPEGVLFQNSNAFMSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKC
                     ICEGDGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY
                     DLSAKNPNVKEEKILRTSEEILNSLEENLKTQQKYLNELKSILK"
     gene            complement(5392..6603)
                     /locus_tag="RJ285_001417"
     CDS             complement(5392..6603)
                     /locus_tag="RJ285_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDV7384170.1"
                     /translation="MSNLPQGWEVKTLSEIGEIVTGSTPSKSNLDFYGKDYPFFKPSD
                     FEQGYFLENAGDNLSKLGFDKARQLPPKTILVVCIGSLGKVALTKVIGSCNQQINAII
                     PHKNIISEYIYYYCISSKFQSILFSKAPQTTLAILNKTEFSKLEIIYPKDIKEQERIV
                     GILDFAFSKIDENIKKAKENLANIDELMQSALQKAFNPLNDNTKENYQLPQSWEWKSL
                     GDTSNYGKTSQVKPSQLKGNDWILELEDIEKESGVLLQKVLFQDRQSKSNKIKFNKGD
                     ILFGTLRPYLKKVIIADDNGACSSEIMPFSTGNSITNHFIYYYLFANFLHDRISSLTY
                     GARMPRLGTKDGKSLQIPLPPLQEQEQIAEHLDFVFEKAKALKELYTKELKDYEELKQ
                     SLLDKAFKGEL"
     gene            complement(6603..>6977)
                     /locus_tag="RJ285_001418"
     CDS             complement(6603..>6977)
                     /locus_tag="RJ285_001418"
                     /inference="COORDINATES: protein motif:HMM:NF019151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDV7384171.1"
                     /translation="KSFSIYSKKATSGNDEKIVKFLLFNIERHLSGGICDEQIATIEH
                     ILPSSLNDEKVHKLGNYILLEAKYNQQLKNKNFKEKIDIYSKSNFKLAQYVAENFKTW
                     DTKSIDQYQNFLAKQALALWKF"
BASE COUNT         2327 a          993 c         1030 g         2627 t
ORIGIN      
        1 aaggacattt tgagagatgt tttgattttt tgtaaatgaa atgctttttc ttaactctcc
       61 aaatctttta gtcccttgca acaaatctcg aataattaaa attttccatt tatttcctat
      121 caaattaagc gtggtttcaa taggacaaag agaatgatat tttttcatta taaatcctta
      181 ttttttaaaa ttataacata ttttttaaaa aaatttatct cattaaaata ctaaaataac
      241 ataatactcc taaaatagat actatattat aaaataatat ctacttgatt tttagtagta
      301 aatatattta taatttctag attgcatttt ttatgtaaaa atacttaaaa aggagatatt
      361 atgaaaatag caattttatg tgcaagcggt aaagtaggca aagaaatcag caaagaagct
      421 ttaaaaagaa atttagagcc agtatgtttt gtacgcaata gctctaaaat gaatgaattt
      481 ttacctcaag ctaaaatagt acaaagagat ctttttgaac ttgattctaa agatctgata
      541 gattttgata ttattattga cgcttttgga gaatgggaaa atttaagctt acataaaaag
      601 catatagaat gcttgagtgt aattttacaa ggaagtaagg ctaaattatt tgttgtaggg
      661 ggtgctggaa gtttgtatat ggatgagaat catactacaa gacttatgga tatgcctgat
      721 tttcctaaag agtatttgga tatagctaaa gcaagtgcgg aagtattgga atttttacgc
      781 aatgaaaaag gttttaaatg ggtatatgtg agcccatctg ctattttttc accagatctt
      841 ccaaaaagca atcattataa aatcataggc gaaaaatttg aagtgaatgc caacaatgaa
      901 agtaaaatca gctatagtga ttatgctagt gctatgatag acatagtgct taattcttgc
      961 tatgaaaaca cacgcattgg ggtaataagc ctataaataa agatgcctta tgcttttaag
     1021 gcatctttta tttcttttaa atacttattt tgaagtttca aatttttcta aagattttat
     1081 ttaatataga taaatatttt tattttaggt tattgactta gacctactct catcttttat
     1141 acttttaaaa atattaattg aaaggataaa atgaaaaatt taaataaagc ttcaagtact
     1201 caaattattc tagtattttg tttaggggta tttgggattt tgagcacaga actagggatg
     1261 atgggtataa ttcctattgt ttctcaaaat ttcagtgtaa gtatttcaga tgcgggttgg
     1321 tgtgcgagta tttttgcact cgtgataact ttttgcgccc ctattgtccc cctgctttgt
     1381 gcaaatttca atcctaaaaa acttatgctt atttgtttag ctgtgtttat cttaagctcg
     1441 ttaacttctg cttttgtgag tgaattttgg caattgctta ttttaagagc tattcctgct
     1501 ttttttcatc ctatttatat agctcttgct ctaagtatgg ttgcaaattt ggtcgaagat
     1561 aagaaagaaa ttccaaaagc tacagctaag atttttgcag cagttagtgc tggaatggtt
     1621 ttgggtgtac ctatgactag ttattttggt ggaaatttta gttttaaaat ggcaatgtta
     1681 ttttttgtat ttttaaatac cttatctttt atagcaactt tattttttgt tcctgatttt
     1741 aaaaaagtaa attctgtaaa aataagcaaa caattgctta ttttaagata cccactttta
     1801 tggattagca tactttgtgt tatttgtata aatgctggaa tttggggttt ttactcttat
     1861 ttttctgatt tcttacatag tgtaggaaag atgaatttta ctttaattag tattgtattg
     1921 gctatttatg gtttttcaaa tattataggc aattatatag ccggaaagac ccttgttaaa
     1981 aacgcaaatt ttactttgat tttaacacct ttaattatga taggatttta tattttactt
     2041 tttagttttt atagtgaaat tatacttata atatttgcct ttatattagg aattttagca
     2101 ggtgtgatga ataacggcac gcattttatg ataagttatc cctttccaaa ggctgctaat
     2161 tttagcaatg gactttttat aagcgtggcc aatataggat taagcaccgg aactgctatt
     2221 tgtggacttg tgatttcttt gagtgatacg cgttatatta tcgtaaatac tattgttttg
     2281 ttgattttag gaattatcat gatttttgta agaagtagga tagaaaaaat gaaattaaga
     2341 ttttaaattt ttacttgact tagagtagct ctcatgtttt ataatactaa aaaaggaggt
     2401 aaaatgcaag aattagaaaa agcaggaatt catggaagtt ttaaaggtga tagtaaattt
     2461 tttagcaaaa atgtaaaagt ttctatgatg tttaaatcaa atgagtggag aaattttagc
     2521 ggggctttgg ttgaatttga agccagtgct agaagtgcgt ggcatactca tcctcaagga
     2581 caaaccttaa tcgtaacaga aggcgaaatt atcacaaaag ttccaggcca aaaagccttt
     2641 atagctaaaa aaggcgatgt gataagctgt cctataggag taaagcattt tcatggtgca
     2701 actaatacaa gtagtggagc acacatagca cttacaggcg aaaaagaagg taaaaatgta
     2761 gaatggcttg agcttgtaag cgatgaagaa tatgaaaatg ccttaaaaga agcaagagag
     2821 taaagaaatt tgtaaataaa acacaaaaat tttataaaaa cttttatgtt tttggagtat
     2881 tttaaatgct cttttttcac aaattttaaa aaccacaaag gataaaacca tgcaattaag
     2941 acaaaaagca agagaaattt ttgaaaaact cttaggagca aaaaaggatc aactttttgc
     3001 aagtgataaa gagtatttta tcaatcatat aaattttact tttgatgaga gctttataaa
     3061 agcaaatttg gatacacaaa aatatttttt aatcactctt gcttctactt tagcagtagg
     3121 tggaaaaata gggtttaaag ctttacttca aggtgcaatc aagaacgata taagtcctat
     3181 tgtcattaaa gaagtgattt atcaagctac cccttatgtg ggttttgcta gagtatgtga
     3241 ttttttaagc ctttgcaata aagtgtttaa aaaactaaat atcgccttag ttttaactcc
     3301 acaaggtact actacgcaag aaaatcgcaa aataaaaggt agggaaatac aaaatgctat
     3361 ttttagtgaa gccaatatca ctaaaatgat agaaactaca ccagaagata aagcttttat
     3421 aaatgatttt ttgagtgcga attgttttgg agactactat acacgcatgg gacttgatct
     3481 aaaaactaga gagcttttaa cccttgtata tcttatctca cttggtgggc tagacaatca
     3541 agtaaaagct cacatacaag gcaatcttaa catggggcaa agtagaaaag atttgctaaa
     3601 tatcattgca gctcttattc catatatcgg ttatccaaaa gctttaaatg ccctaaattt
     3661 gcttgatgat attaaaaagt agaatgcaag caatgaatat ttattgtaaa ttgagcttag
     3721 aagttatttg taaattagtt tttatcaaaa aacttgcaat cattttagta tgcttttaag
     3781 ctcatttaaa tatttttgtt gtgtttttag attttcttct aaagaattta aaatctcttc
     3841 gctagttctt aggatttttt cttcttttac atttggattt ttagcactta gatcatagtt
     3901 tctttcttca agctcttttt tgctaacaag ccaagaatta gcagtgattt ttctttcttt
     3961 gtagcatttt agaaattctt taaaatgtgc gtattctaaa ggcttatttt tagtaagttt
     4021 ataaggcggt ataagttcgt agtaataaac tccatcgcct tcacaaatac attttttacc
     4081 tttagagaaa aaaagcacat tagtcttaac agcactataa ggcaaaaata ccccacttgg
     4141 caaactcaaa acgcattcta aattaaaatc atctagtaaa tcttttttta cactcataaa
     4201 ggcatttgaa ttttgaaaaa gcacaccttc aggcacgatg atcgcacatc ttccgttgtt
     4261 ttttaaagat tttaaaatgt gttgcaaaaa caaaagttca gtagcgtttg attttatagg
     4321 aaaattttct tgaatttgtt ctttttcttt acctccaaaa ggtggatttg caagtattac
     4381 ttcgtattta tctttttctg ttatatctgt aattttttta cttaaagtat ttgtttttat
     4441 gatatttgga cttgaaattt catgtaatat catattcata acgcccattg catagctaag
     4501 aggagttttt tctttaccaa aaagagcatc attttttaaa aattcaagct cttctacgct
     4561 taaatttgct tttttgcctt tggttctgtt tttatataaa atatgtaaaa aactctcaac
     4621 taaaaatcca caactaccac aagaaggatc ataaattctt tcttttggtt taggatctat
     4681 tacttccacc atagtcttta tcaaaggacg aggggtgtaa aattctccac tatttccacc
     4741 atcgctaccc atatctttta aaagtttttc ataaacttca cctaaggcaa atacttcatc
     4801 ttctttatta aaactaatct catcaatgat atttatcact tctcttaaag tatgtccatt
     4861 tgctatgcga ttgtctataa attcaaaaat tccaccgatt ttatactcta tacttttaaa
     4921 atcatcatca tttttaaaat ttttaagata aggaaaaagc tctttattta cgaattcaag
     4981 caaatccgat ccacttaaag cattttttac atcaagtttg ccatcttttt taggcgctgc
     5041 ccaaacactc cagctaaatt tttcttgcaa aatgctttta taatctttgc catctaaaaa
     5101 cgctaaatct tttaaatttg tctcataatc atctaaaaat tttaaaaaaa gtatccagcc
     5161 aatctgctct gtatagtgca tagcaccact tatgccatca tctcttctta gaatatctgt
     5221 gattttatcg attttatttt gcattttctc cctttaaagc ttttaaaata gttttatcaa
     5281 agtttagttt tatttttgta tatttttgtt tttgaactgc aatatgttaa aaaaatcaaa
     5341 aatttttaac atatcaagcc aatgtgttaa aatttggcaa attttttaac attataattc
     5401 tcccttaaaa gctttatcaa gtaaggattg cttaagctct tcataatctt ttagttcttt
     5461 agtgtaaagc tcttttaaag cctttgcctt ttcaaacaca aaatctaaat gctctgcgat
     5521 ttgctcttgc tcttgtaaag gtggtagggg gatttgtagg gatttgccat cttttgttcc
     5581 aagtctaggc attcttgcac cataggttaa acttgagatt ctatcgtgca aaaaattggc
     5641 aaataaataa taataaataa aatgatttgt tatggaatta cccgtagaaa atggcattat
     5701 ttcagaagag caagccccat tatcatcagc tataatcact tttttaagat atggacgcaa
     5761 tgttccaaat aaaatatcac ccttgttaaa tttaatttta ttgcttttac tttgtctatc
     5821 ctgaaataac actttttgca acaaaacacc gctttctttt tctatatctt caagttctaa
     5881 aatccaatca ttacctttta attgactagg ttttacttgt gatgtttttc catagttgct
     5941 agtatcccct aagcttttcc attcccaaga ttgtgggagt tgataatttt ctttagtatt
     6001 atcattaagt ggattaaaag ccttttgtaa agcactttgc ataagctcat caatatttgc
     6061 taaattttct tttgcttttt tgatattttc atcaatctta ctaaaagcaa aatccaaaat
     6121 ccccactatc ctttcttgct cttttatgtc ttttggataa ataatttcga gtttggaaaa
     6181 ttcagtctta tttaaaatag ctaaagttgt ttgtggtgct tttgaaaata atatagactg
     6241 aaatttagaa gatatgcaat aataataaat atactcggaa attatatttt tatgaggaat
     6301 aattgcgttt atttgttggt tacaacttcc aataacttta gttagtgcta ctttacccaa
     6361 agaacctata caaaccacaa gaattgtttt aggcggaagc tgtctagctt tatcaaagcc
     6421 tagttttgat agattatctc cagcattttc taaaaaatat ccttgctcga aatcactcgg
     6481 cttaaaaaat ggataatctt ttccataaaa atctaaatta cttttactag gtgttgaacc
     6541 cgtaacaatt tcacctatct cgctaagcgt tttaacttcc caaccctgcg gtaaatttga
     6601 cattaaaatt tccacagagc taaagcttgt ttagctaaaa aattttgata ttgatcaatg
     6661 ctttttgtat cccaagtttt aaaattttct gctacatatt gtgctaattt aaaattagat
     6721 ttactatata tatcaatctt ttctttaaaa tttttatttt ttagttgttg attatatttt
     6781 gcttccaata aaatataatt tcctaattta tgaacttttt catcatttaa agaagatgga
     6841 agtatatgct ctattgttgc aatttgttca tcgcaaatac ctcctgataa atgtctttca
     6901 atattgaaaa gtaaaaattt aactattttt tcatcatttc cagaagttgc ttttttggag
     6961 tatatagaaa aagattt
//
LOCUS       DAPIWU010000087         6905 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.087, whole genome shotgun sequence.
ACCESSION   DAPIWU010000087 DAPIWU010000000
VERSION     DAPIWU010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6905
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.087"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(49..1727)
                     /locus_tag="RJ285_001419"
                     /pseudo
     CDS             complement(49..1727)
                     /locus_tag="RJ285_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893445.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(1737..2774)
                     /locus_tag="RJ285_001420"
                     /pseudo
     CDS             complement(1737..2774)
                     /locus_tag="RJ285_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895311.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2779..4374)
                     /locus_tag="RJ285_001421"
                     /pseudo
     CDS             complement(2779..4374)
                     /locus_tag="RJ285_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873680.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(4386..6314)
                     /locus_tag="RJ285_001422"
     CDS             complement(4386..6314)
                     /locus_tag="RJ285_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384172.1"
                     /translation="MGVENIYTLPLNGAPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINTKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPSNGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
     gene            complement(6244..>6905)
                     /locus_tag="RJ285_001423"
     CDS             complement(6244..>6905)
                     /locus_tag="RJ285_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384173.1"
                     /translation="CSVVLSSSVCFAAVQATSKDGKIFYISEHSFKDNQVYDPQAEIF
                     KKINGKNFYASKSKYPISNLTMIHNNPKSGNKNLSKLEILTPDTSKEEIITAFSTLGT
                     VSSDTQAVPSSFIPFIVIAYAQNTNATNNKLILENGELSSVYFCKPSIGDCGVPNNSQ
                     KGDRFKYLITAAFTDRRAGGGEFNNQTILKENSYINNGCRKYLHLALKWSSLYFRICS
                     F"
BASE COUNT         2188 a         1217 c          834 g         2666 t
ORIGIN      
        1 tggtgggttt aaaaatgggg ggggggggaa tttccaatca ccccaaagtt aaaagtattt
       61 tcctaggctt gcataaactc ttgctcgatg ttctccatcg tgtttaagcc gataaacagc
      121 tcttgcagca tccattttta cataaaaatt agcacttctt gtatagagta tttgtatacc
      181 cattgcatcc ataagataat gattttcact ttgatatttt ttattttcat accaagaata
      241 ccctatatca taaaaaggag tcgagtaaag cccttctaaa ggtgtttgaa atcttattcc
      301 caaggtgcca gaaacaacat tatccgcact tccctcacct tccaaacaaa cacatacacc
      361 acaaggtcta cctaaagata cggattcact actatctaaa acagtatcgc tgataacttt
      421 ttgataattg agttgaaaaa tgtgagttaa gcgttcttag aattgatatt tgttgcttaa
      481 atttaaattc atttttccaa aatttcctaa atttactcca ttaaatccag aaaaatcacc
      541 atcattttca acattaccat atataaaatt taaagtataa cttaggacat tattctccaa
      601 acctctataa gttctttcta tgcccaaatt tacactattt ctcgcttttt cattgcttac
      661 taaaccatca agataataat ctttaatctt tttatgagta aaacccgaaa caagatataa
      721 agaatactca gtatataaaa acacaggata agaaaaattt actccaacat tcatagagtc
      781 cctataaaaa ctaagatttc tataaattct gccaggaata taatgtcctt gagttgcaaa
      841 tggagtaatt tttaaattcc ctataaaagt actataatta atcccataat ctgtttgatt
      901 tttatcacta tcttgaagat aaaaatttaa gttatcccct tatcttgcta tattgtttaa
      961 actttgactc attcctgctc taaaacgacc tgtttcttta gtcccatagt tgttagaata
     1021 taaagttaaa gttgcactat ctcacctttc tttacttcta taataacatc actttctcca
     1081 caaccatcac ctgattgtaa attagcattg gtttggattc cgtatatttc attgatttta
     1141 taaatttcat tttccacatt tttagttgtg ataactttcc ctttaagatt tttgttcaat
     1201 ttactctcta aagcataatc tctgacacct gagttgtttt taatgattac ttttcctaaa
     1261 agttccaaaa gctatgttaa tttgcacttt gttagaactt aaatcttgcg gtggtatata
     1321 agcagttgcc gaaggatgac tacttaattg acaataataa gctataatgt ttgttatatc
     1381 ttttaaattt tgtaagctta attcttggtt gcgatattca gctattgcat cttgaattta
     1441 tttttcgcta attcttaatt ttttaaatgt caaatcttta ttatcgatat gcaaaacata
     1501 ctctcttaca aaaaccttag cttcattttg atcagtttgt aaatttgcaa tatttgtagt
     1561 attttgctct ttaaaattta cagggctttt ttgatttttt aatgtatttt ttaattttta
     1621 ttttgtggtc catttgcttc agaagagctt tctataagct ctcttatttt attattattt
     1681 agctcttcag catgtgaaaa tacttgcaat aagattaaat ttctcatttt tatttcctat
     1741 tttacattta cacaaatgtt cattgtctta aaattatcac ttacaataca acgcaaacca
     1801 ctacttctag catctgcttt tcctatgtcc acttgatcat catcttcttt ttttgtgtct
     1861 actttagttt gaatttttat aggagcttct acaacctttt caggaatttc aggcggcaat
     1921 acagaaggtt tgtctggatc ttcaccccct ccctcttttt ttgtttatct ggctcataga
     1981 tagatatatt tgatttttct ggcaatgagg ctaattttcc ttcgaaatta tattttccag
     2041 tgtacacttt accatctaca tcgcttccat ttatagcaaa accttgagaa tttagaatct
     2101 cattttcaag cttatagtga aatccttcat ttccactaag atccgcaaac tgcttttcaa
     2161 gagcttcttt ttgttctaaa agttttgcat acataactct aagcgtttca tcgctaacta
     2221 agcctgattc tttgattttt tcatagtttt tattttcttt gtcaagttga gctaaggctt
     2281 cttggtattt ttgtaattct tctttaaaac tagcgaaaca acctttgccg gttttgattt
     2341 tatccatagc agttttcttt tgcgtccatt tttcataaag attggtataa tttttataac
     2401 tttgttcttg cgaaccttgc cataacttta aaaattcttg ttctactcca gtatctttaa
     2461 atgtatttaa gaaatttaaa ctttgagtga tctcactggc ttcattttcc cctgccacac
     2521 ccttgctatc tgcgtaaatc caagttttgg tatcaaaacc ataagtgtat tttccattca
     2581 tcaaatcatc taaaattctt tgaagcaatt tagggtcaaa gtcgtctttg gataatttca
     2641 cagcatctgt taccttggta aaagaatcag caaaagcata agaattatta tcaagatatt
     2701 ttatatcgtt aaatttcttt cttacagcac tatcaaaatc ttttttttcc tgttacttca
     2761 ctattatatt gcacagactt aaaaaaaatt ctgtccttca tcaatgtaac cattttctaa
     2821 attatgataa acataaatat tactaaaatt attatttaca ctaattccag gatcaccaat
     2881 aacttttcca gcttgtgttt tataatttcc agcactcaaa attgctccat ttttataaaa
     2941 taagtaagca ttattaatct ttaaatttcc aacttttcca gtaaatcctc ctgttttact
     3001 atcattccca gaagttataa gtttttctat gtcattaacc acaacattat taaaattacc
     3061 accatcaatt tgtctgccta tgccacccac ataagaacct tcttttgtta ctatacttat
     3121 attattaata acaacatttg taaaattgat agtgttattc cctccactac catttcccca
     3181 gcctattatt ccgccaactt tagtatttac agctgtatta ataacgagat cattaacagt
     3241 cacattttca aaacccgtat aactgtttgc aatattttgc cctactatac ctccaacata
     3301 agcatcataa ccagttgaag caattttcaa tccttgaata ttaaggtttc ttatatagct
     3361 attttgaaca actccaaaaa ttcctacata ttgatttgat gaattaatat taacattttt
     3421 taaagcataa ccagaaccat cgaaagattt agcaaaagca ttgcttgtat tatcacctac
     3481 tatgtatgtt ttcacgccac taaaatcaat atcatcaatc aaacgaaaat gatcaaaagc
     3541 tgttctaaat ttttctttat ttacattcca aaaatcagca aatttattcc attctgttgg
     3601 atccgcaata cttccatatt tagtccagtt tttaacttta ctactatcat caaaactaaa
     3661 tttactacta gaattaccca ataaagctcc attttcttca aaacttgtta tgctttgttg
     3721 aatgatagct tcttgctctg ctttggctac gatatttttt gtatctttta ccactccagc
     3781 atcaacataa actttgttac cttcaagttt taatacatcc aaagtaattt ttcctttatt
     3841 gatttcaacc ttatttccta ttaaaacaat attatctgca ttgatctttc caagatttat
     3901 aatatttcct tgcttgctta catcaaatac tggagaaaaa ttcatccctt gagaaataaa
     3961 attttggaca tctgaatctt ttaaaggtgt tgtgctagct acaaattttc ccgcagtgat
     4021 agttcctgtt ttgccaatca aaactcccat gggattaact aaaaagatgt tattggtgcc
     4081 gccatctagt tttccatcta tcttagaagc atctttttga taagcaatgt ttaggtagtt
     4141 ttattgattt ccgttaaatt ttacagtttc attttgtcct atattaaaac caccacccca
     4201 ttgaataaca gagtttttat tgtttcctat gacattcatc gtgccattgc ttgaacttat
     4261 acttcctgtt gaaccatgag tgaatttacc tccttgtggc aaagcataag cttgagaaaa
     4321 gagcaaagaa ctcaccgcaa atgataaaac tatatgttta ctcatctttt tcatgttact
     4381 ctcctttaaa gtatgttgat ataaattatt tttgcatcat ctgaaacttc aaagctaaaa
     4441 tttacatttt tcaatgtact tttagccaac ttttctatct tgttgtaatt aaatttattt
     4501 ttattatttt tcattttttc taacaaattt tctaattctt gttgatttaa caatctattg
     4561 tcaccatcat aaattccaac atcactttgt atgagaatat attttccttt tgttggttta
     4621 tttttagtaa gaatttccat acttccattt gaaggaagat ttataagttt ttctatagtc
     4681 aagataggat tttttatttt atttggtaaa ataaaagtaa aattttcaaa gttatttacc
     4741 acttctgatt tgacatcttg agtatctata atcaaacgat tatttttaga aaaatcttct
     4801 tgatgcggta gaatttgagt gattattttg ccttttttat ttacttcatg aaaaacagaa
     4861 ccagaaagca aatcgatatt tacatcttta aagaaattta actctccacc taaatataaa
     4921 gtattgttat aagatttaaa atttgaaata tccgaagttc cagatggagc taaaaatata
     4981 gcatcttgat ttttatactc atctatattt aaattaacaa gctccatgat attatcatga
     5041 gaatttgcag acactccagc tatcaacccc acataacctt gtcttttatc tgaggcagta
     5101 ctaaaaactg tgttgttgat gatgatttta ttaaaagcac tttctttgtc tgcttttatg
     5161 atgcacgaac tttccacggc agccgaagaa caatctttaa gctttataag attgttgttt
     5221 gcattttgag ttgcttttaa aataattttt gagccctttc ctaaagaact cgcttcggtt
     5281 aaactctgaa tgagattata atttatttta ttatttgaaa catttttagt attgatcatc
     5341 aaacttaaat ttttagatga tttaatattt tcaaaattta cttcattatt gtttgattca
     5401 tcagcgatat agtctatacc atctagcgta gtttcacttg taataaaagc atataaaggc
     5461 aatgaaataa cagaatcttt tatacttaag gtattattat ttgcttttcc acttaaagtt
     5521 ctagctgcat atacagtaaa tttatcagaa taattttgtg gaactttttc ataggttaaa
     5581 tcattttgta tatcaataat attaaaattc gcaccctccg tagcaaaacc tccgtaaaga
     5641 ttgtaataat tttttccata aaaattatca ctgattttta aaggtttttt aagacgaaat
     5701 acaattttat ttccattagc ttcaccatcg ttagaatacc caccatagag gtttaacgat
     5761 gcatgtgttt taatgttttt atcaagatga tctaatgagt taaaatgata aacttctata
     5821 gaatttttct ctgcattacc ctgtaatgtt cttccgccat aaatttctcc aaataaaaca
     5881 gcatcataaa aagttatttt attttgcgaa tttaccatta aatctaaatt taaattttta
     5941 attattacgg aatttttact tacattgtat tttttaagat tatttacatc agctaaagca
     6001 cctaaaattt caaaggtcga acgagctgta tactcaccat ctggcccatg aaggacgata
     6061 ttggctgaat cgataagaac tttattgttt tgtaaattag aatttatgcc aaaagctccc
     6121 attaaacgag taattctttc atcataaata tccttacctt cttcatctga aaaatactgg
     6181 gaattatgaa ggtcaatttt tgtatttgac tctaagatta atttattgtc tttagcttca
     6241 ccatcaaaag ctacagatcc tgaaatataa ggagctccat ttaagggcaa ggtgtagata
     6301 ttttctacac ccattattaa tataggagtt ttcttttaaa atggtttgat tgttaaattc
     6361 cccccccccc gcccgcctgt cagtaaacgc cgcagtaatt aaatacttaa aacgatcgcc
     6421 tttttgagaa ttattaggta ctccacaatc ccctatgctt ggtttgcaaa aatacacaga
     6481 agataattct ccattttcta atataagttt attatttgtt gcatttgtat tttgagcata
     6541 agctattaca ataaaaggta taaaagaact aggaacggct tgagtatctg aagatacggt
     6601 tcctaaagtg ctaaaagctg ttatgatctc ttcttttgaa gtatccggag ttaaaatttc
     6661 aagcttggat aaatttttat ttccagattt agggttatta tgaatcatag ttaaatttga
     6721 tatagggtat tttgacttag aagcatagaa attttttcca ttaatttttt taaaaatttc
     6781 tgcttgagga tcataaactt gattatcctt aaaagaatgt tcagaaatat aaaaaatttt
     6841 tccatccttg cttgtagcct gaaccgccgc aaaacaaacc gaagaagata aaaccacact
     6901 acaaa
//
LOCUS       DAPIWU010000088         6888 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.088, whole genome shotgun sequence.
ACCESSION   DAPIWU010000088 DAPIWU010000000
VERSION     DAPIWU010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6888
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.088"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            61..285
                     /locus_tag="RJ285_001424"
     CDS             61..285
                     /locus_tag="RJ285_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7384174.1"
                     /translation="MMKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFSKDELSQLKSQNELLKAIKEKLC"
     gene            311..1187
                     /locus_tag="RJ285_001425"
                     /pseudo
     CDS             311..1187
                     /locus_tag="RJ285_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807225.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            1187..2750
                     /locus_tag="RJ285_001426"
                     /pseudo
     CDS             1187..2750
                     /locus_tag="RJ285_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
     gene            2740..3801
                     /locus_tag="RJ285_001427"
     CDS             2740..3801
                     /locus_tag="RJ285_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDV7384175.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPNFFMPSTACY
                     LHQLLNLSPKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLVCGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNETFFELGSDGRHFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGTGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            3801..4022
                     /locus_tag="RJ285_001428"
     CDS             3801..4022
                     /locus_tag="RJ285_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7384176.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFALKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(4036..5263)
                     /locus_tag="RJ285_001429"
                     /pseudo
     CDS             complement(4036..5263)
                     /locus_tag="RJ285_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865679.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            5324..6832
                     /locus_tag="RJ285_001430"
     CDS             5324..6832
                     /locus_tag="RJ285_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HDV7384177.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKKRKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLLKNAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNVLKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKSKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHANIKNSACIFKEDI
                     ICFYESEEEIDLKAFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
BASE COUNT         2578 a          961 c         1027 g         2322 t
ORIGIN      
        1 tgttcaagca atatgtcaag ccttaaccaa tgataaatta gccatatata agaaagatcg
       61 ataatgaaac aattttatga aattttagaa aatatacttg aaaccaaagt agatgaaaat
      121 acaaatttaa gcatggaaaa ctgcaagaac tggacttctt tagctcatat tgatatcatc
      181 atgagtttag aagaagaatt tgaaatcaaa tttagcaaag atgaattaag tcagctaaaa
      241 tctcaaaatg aacttttaaa agctattaag gagaaattat gttaaaaaaa ctaaaaaact
      301 atttaaactc atagaagaaa aaaatgcttt gcataaaaaa tgtttagatg gattgcaact
      361 ttcagatgaa gaatataatg atttagaaaa acttatcatc tattataaag atacattaaa
      421 catcaatcta gaagaacaag ctaaaagtta tatagttgta ctcaatgaca ctctagaaga
      481 aactaaatat tttatagaat ttggaaaata tagatatagc actttagcag aagtaaaaaa
      541 tatggtatat ttcaatgaaa attatatgaa gcaatacatg gtgggacttg ctatatcttc
      601 ttttatttgg aatgctcata ttgaagttag aagatatttt gctaaatata tagataaaaa
      661 acaagatcga aaaagcactt atcttgaaat cggtcctggt catggagaat tttttgttaa
      721 agcactaaga agtcaaaaaa tttatagaat attatggaat agatatttct cctataagtt
      781 gtcaaatgag caaagatatg gtagaaaatc aatttggagc aattaatcaa aataatttta
      841 aatgtgattt tatatgtaaa gatttcacta aatgcaattt caacaataaa gcagatttag
      901 ttgtaatggg agaagtcttg gagcacgtag aacaaccttt acagtttatg aaagatgtaa
      961 aaactttact gaatgatggt ggagaaattt ttgcaaccat ccctatcaac gctcctgcta
     1021 ttgaccatat ttatttattt tcccatcctg atgaagttaa agatttgctt aaaaatgcag
     1081 gtttaaaaat caaagaatgc gaatatttta tggcaaataa ttattcttta gaaaaagcat
     1141 taaaaacaaa aaatgccatt gttatggcag tggttttgga aaaataatga atcttttttc
     1201 acctcattta aaacgcaatg agcttataaa atttgccaaa gaattagact ttagtaaaag
     1261 tcaagatctt cttattaata tccatagaaa tcatactttt gaaggagtgc aaagcatcat
     1321 tgctcctttt ttacattttg ctaatttaag agctgagttt aatttcagct cttatgatga
     1381 tagcttgagt tttgataact ttaaataagc tagtttagaa cttttatggc tagatttaac
     1441 ccgctataaa aataatgtgc aaaattttat agaagaaaga cttttagaac taagaaaaat
     1501 ttcacaaaac cctattttag ttcttagttt aggagaattt aaaacagata aaaaaatttt
     1561 aaattgtgaa atttttaaca tagaaaaact cataaaagag tattttgatg aagaagatat
     1621 tttagactta gctaaagaag aacttacagg ctctaagctt aataataaag ccttgatttt
     1681 cttggcacaa attttaggac ttagtctcat ccctgcactt gtaaaacccg ctcttaaagc
     1741 tcttgtactt gatcttgata ataccttgta tcaaggaatt ttaggtgaag agggtataga
     1801 taatcttaat ttaagtcctt tgcacaaaac cttacaagaa aaaattaaaa cttttaaaaa
     1861 acaagggttt ttacttgccc tagcttcaaa aaatgaagaa aaagacgcaa aaaaactttt
     1921 tgaaataagg aaagatttca tcttacaatg ggatgatttt gatgctagaa tgatcaattg
     1981 ggagccaaaa ggtgaaaata tcttaaaaat tgctaaaaaa tttaatataa atactaacgc
     2041 tatgcttttt atagatgata atatcgccga gcttgaaaat accaaaatta caggcgttaa
     2101 aacactttta tgcgatgaaa atatacttta taaaatcaaa ctttttccta atcttttaaa
     2161 actttcaaat taccaaagaa gatcaaattc gtgccaaaga tatagcagcc aatgctttaa
     2221 gagaagagct taaaagctta agcgatgaag aatattttca aaatcttgaa atcagcttaa
     2281 attttagcaa aaatgatctg caaaatatcc ctcgcattag cgaactttta ggcaaaacca
     2341 atcaatttat cgctaattac acacgcttaa atcaagaaaa agtcgcacaa cacatgcaaa
     2401 aagaactcat tgtaagtgtg agcatgagtg ataaattaag cgatagtggg attatcgcta
     2461 tttttgtttt ttcttgcaaa gaaggaaatt tatttatcga tgatctttgc atttcttgta
     2521 gggctttagg tagaaaactt gaaactagaa tgttttttaa agcctttgaa ctagctttac
     2581 atttctttga tcttaaaaac aataatgcaa ggctttacta tcaaaaaggc gaaagaaata
     2641 tgccattttt aagcttttta gaacaaattt ctaaagaaat tgaaaaaaac tcagcccttg
     2701 tttcatttca aaatttaaac tttaaaggac ttataatcca tgaaaactag atttgataaa
     2761 gccaaaattt caggcatttg cgtaagcgta cctgaacata aaatttgcat tgatgatgag
     2821 ttagaaagcg ttttttcaaa tgatattaaa acccttaaaa gaatgaaaaa agtcataggc
     2881 ttaaacacgc gttatatttg tgatgaaaac acttgtgtaa gcgatcttgg caaacacgca
     2941 gccaatacac ttttacaagg tttaaatata gataaaaata gccttgacgc actcattgta
     3001 gtaactcaaa gtcctaattt tttcatgcct tctacggctt gttatttaca ccaactttta
     3061 aatttaagcc ctaaaaccat agcttttgat ttaggacaag cttgtgcagg gtatttatac
     3121 ggcttatttg tcgctcattc tttaatacaa agtggcttag gtaaaatttt gctcgtttgt
     3181 ggggatactt taagcaaatt catccatcct aaaaatatga atttagctcc aatttttggc
     3241 gatggagtaa gtgcaacttt gattgaaaaa acggatttta atgaaacctt ttttgaactt
     3301 ggaagcgatg gaagacattt tgataaactc atcattccaa aaggtgcgat gagaatacct
     3361 aaagcagata tttttaacga tgattcgctc atgcaaactg aggagtttag acaattagaa
     3421 aatctttata tggacggagc aaatattttt aatatggctt tagaatgcga acctaaaagc
     3481 tttaaagaaa ttttagaatt ttctaaagta gatgaaaaag acattgcttt tcatcttttt
     3541 catcaatcta atgcgtattt ggttgattgt attaaagaag agttaaaact taatgatgat
     3601 aaagttccta atttcatcat ggaaaaatac gctaatttaa gcgcttgttc actacctgcc
     3661 ctactttgtg aactagatac tccaaaagaa tttaaagcga gtttgagtgc ttttggtaca
     3721 gggcttagct ggggaagtgc cgtgctaaat ttcaaggatt tatacacaaa agatatttta
     3781 atttacacaa aggagaaata atgacaaaaa ctgaattttt agaagagctt aaagaagcta
     3841 tgcatagaga tgaagactta aatgaagata tgctacttga tgatatagac gagtgggata
     3901 gtttggcttt tgtatctgtg atggtgcttt ataaaaatct ttttgcttta aaaatcacag
     3961 ccgaggactt gaaaaattgt caaaaagtaa gtgatttaat caatttagca aagcttgatt
     4021 aaaaccttta aggttttaat cttttatcgt taattcaaat ttatctccca catctttaaa
     4081 cataaacact ttatttccac aaggataaga gatggaattt tcttgcatga aagattttct
     4141 tttttgcaat ttttcaagca ttaaaggaag ttcttttcta aataaggctt tatcaggtat
     4201 accacaacca tgatctaaat ttttaataaa ttttccatca attttatttt catctatcaa
     4261 atttaagctt acatcgtaac ctaaaatttt taatatttgc atggtttgtt gtttaaaatt
     4321 ggcaggcgtt agaggatctt tatcgctatg ataactcaca taaataatat ttttattttt
     4381 ttgactttgt aaaattaaat gatctttatt taacaatgtt ctaataaaat aattttcatt
     4441 attaaaaaaa taaggtgaat tttctttacg cgtccagtgg gtttttagaa aacaactcac
     4501 aaaaaaatga tcgccctgca tatacatatc cccattagta tctttgcttt taaattccaa
     4561 ctctctacca ataatataat taagcggtgg aacagccgaa cccgaattat caatcacacc
     4621 atccacatac caaggagcta tctttgctat gagcaaggct aagtatcctc cataagaccc
     4681 ccccccataa atttttggta aatctgcaag ttttggaaag cgtttaacta gatcttttaa
     4741 agcattgata tgatcaatag ctgccataat gccaaaattt tgatattctc cacgcgaagg
     4801 aataaaagtt gcacttagtc tttcttcaaa atcataaggc aatcgattta acatttttat
     4861 tctgtcataa tctcgctcaa atattcacaa tgactaacta cagtattatt ggctaattga
     4921 tcacatggaa tattgtattt acgaagcact ttttctatta attttaaatc atcttttgta
     4981 aaatctgcta atgttgatac ttttcaacat ccgaacgcct ttgacaaaaa caatgataaa
     5041 aaacatgcac tgctacaaca tcaaaatttt tagcaatata atttctataa gagtctaaaa
     5101 aatatatatt tgcattggct ccataacctc ctattataaa aactatagct ttaatctctt
     5161 tttcatcatc ataacttata cggtattcaa gtttgctagt tctttttata tttaattcta
     5221 catcatcaca agaatcaatt tcaaagcttt ggtttatgag tatataaagg ccttttttat
     5281 taatttatcg atattatatt acaaaaaatt aaaaaggtaa atcatgacaa ctcatatcta
     5341 tgatttttta gaaaaaagtt taatcaaatt tagcgaaaaa actgcttttg tagaaccctt
     5401 tgccaaaaaa agaaaggaaa tcacttacaa agactttgat ctcttttcta aaaaactagc
     5461 cagtgaaatt ttaaaaactt taggaaatga taatcctact caagctcctg ttttaatcat
     5521 cttgcctaaa gggattgatt gtttgatttc attttttgga gtagcactca gtggaaattt
     5581 ttatacactt ttagatgaaa aaagtcctaa agaaagagta gaaaaagtta tagaagtttt
     5641 aaaacctaaa ctttttatca cttcaaagga tttaaatttt aatttagatt tgcctacgct
     5701 ttatacacaa gactttgaaa gttttaatat agatgagagt ttgctaaaaa atgctaaaga
     5761 aaaacatata gatactaatt tactctatgt tttctttaca agtgggagca caggcattcc
     5821 taaaggagta agcatagcac ataagagtgt gattgattat actttttggg tgtgtgagac
     5881 ttttaaattt gatgagaatg aaattttagc caatcaagca ccattttatt ttgacaatag
     5941 cattttagat attttttcaa gtgtaaaatc aggagcaact ttacaccttt tacctaatca
     6001 tctttttgcc tttccaaata aaattttaga atgtcttgaa aaagaaaaag taagcactat
     6061 attttgggta ccttcggtgc tgatttattt tgcaaatact gaagctttga ataattttag
     6121 tttaaacgtc ttaaaaaaga tacttttttg tggtgaaatc atgcccaata aacagctaaa
     6181 tatttggcgt aaacacttac ccaatgcttt atttgccaac ctttatggtc caacagaaat
     6241 cactgatgta tgttcttttt atatcatcaa tcgtactttt aaagatgaag aacttttacc
     6301 tataggcaaa gcatgtaaaa acacagaact tttagttttt gatgaaaata tgaatttcat
     6361 aagtcctaaa caaataggtg ttaaagggga gctttttgtg cgtggaactt ctttgtcttt
     6421 agggtattat aatgacaaag aaaaaagcaa acaagctttt attcaaaatc ctttacatga
     6481 taattattta gatttactct ataaaacagg agatatcgtt tcttataatg aatttggaga
     6541 gcttttatgc tacggaagag cagataatca gataaaatat atgggacaca gaatagaact
     6601 tggagaaata gaaagcgtga taaattccca tgcgaatatt aaaaatagtg cttgtatttt
     6661 taaagaagat attatttgtt tttatgaaag tgaagaagag attgatctta aagctttttt
     6721 aaaagataaa ttaccttctt atatgatccc aaaaaatttt attaaactcg acaaatttaa
     6781 gcttaatcaa aatggtaaaa ttgatagaaa ggttttaaaa gaacttgttt aaaaaagctt
     6841 tttataaagg atttaagtta agtaattact atgacaattt tggtacaa
//
LOCUS       DAPIWU010000089         6789 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.089, whole genome shotgun sequence.
ACCESSION   DAPIWU010000089 DAPIWU010000000
VERSION     DAPIWU010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6789
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.089"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            57..341
                     /locus_tag="RJ285_001431"
     CDS             57..341
                     /locus_tag="RJ285_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7384178.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVELGQPSRDNIGADMRSGDTPVFA"
     gene            454..867
                     /gene="ndk"
                     /locus_tag="RJ285_001432"
     CDS             454..867
                     /gene="ndk"
                     /locus_tag="RJ285_001432"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDV7384179.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            868..1221
                     /locus_tag="RJ285_001433"
     CDS             868..1221
                     /locus_tag="RJ285_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384180.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            1245..1391
                     /gene="rpmF"
                     /locus_tag="RJ285_001434"
     CDS             1245..1391
                     /gene="rpmF"
                     /locus_tag="RJ285_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDV7384181.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            1397..2383
                     /gene="plsX"
                     /locus_tag="RJ285_001435"
     CDS             1397..2383
                     /gene="plsX"
                     /locus_tag="RJ285_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDV7384182.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNRTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKSSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            2376..3350
                     /locus_tag="RJ285_001436"
     CDS             2376..3350
                     /locus_tag="RJ285_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDV7384183.1"
                     /translation="MLKAGLKSIASYIPEKILSNADLEKIVDTTDEWITRRTGIKERR
                     IASENENSSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIVGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(3347..3697)
                     /locus_tag="RJ285_001437"
     CDS             complement(3347..3697)
                     /locus_tag="RJ285_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDV7384184.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQILLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3694..4770)
                     /gene="serC"
                     /locus_tag="RJ285_001438"
     CDS             complement(3694..4770)
                     /gene="serC"
                     /locus_tag="RJ285_001438"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HDV7384185.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGICEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            complement(4780..5943)
                     /locus_tag="RJ285_001439"
     CDS             complement(4780..5943)
                     /locus_tag="RJ285_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDV7384186.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGNFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            complement(5940..6647)
                     /gene="ubiE"
                     /locus_tag="RJ285_001440"
     CDS             complement(5940..6647)
                     /gene="ubiE"
                     /locus_tag="RJ285_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDV7384187.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEILD
                     YKSFSFGVSSMFIAKKL"
BASE COUNT         2356 a         1087 c         1007 g         2339 t
ORIGIN      
        1 atttaagaat tttatgctaa aatcttttaa atcttaatat taaataagga gaaaaaatgg
       61 ctgtaaaaat tacagatata tgtattgctt gtggttcttg tattgatgag tgtccagtga
      121 gtgctatcgt tgatgatgct aacaatccag aaggtgaaga tagatattat gtttatgcaa
      181 acaaatgcgt tgaatgcgta ggacataatg atcaaccagc ttgtgccagt gcttgcccaa
      241 cagatggatg tatagtttgg agtgctgtag aattaggaca accaagtcgt gataatattg
      301 gcgctgatat gagaagtggg gacactccag tttttgcata attttaaaaa attaaaaagc
      361 tagagattcc tagctttttc ttttaattta actttcttta aacaaattca agtataattt
      421 taagctttat taaaataagg agttattaca aagatggaaa aaactttatc tataattaaa
      481 cctgatgctg ttaaaaaagg tgttatagga aaaattttag atcgttttga aagcaatgga
      541 ttaagaatcg ctgcaatgaa aaaagttcaa cttagtaaag aacaagctga aaatttttat
      601 gctgttcata aagaaagacc tttttttaaa gacttggttg aatttatgat tagcggtcct
      661 gttgttgttt ctgtactaga aggagaaggt gctgtattaa aaaatagaga tttaatggga
      721 gcgacaaatc ctaaagaagc taaagcagga acaattagag ccgattttgc tgagagtatt
      781 gatgctaatg ctgttcatgg aagtgacagc ttggaaaatg caaaaataga aattgatttt
      841 ttctttaaac caaatgaaat ttgctaaatg aaaatccctt tttctaagat taatacaaag
      901 gaatatcctt ttaaacttaa tcttgaaaat atgatttttg agggaaatct agtaaaaata
      961 aatcctaagc ttgttaaaat aaatgctatt atgcaaggtt ttatctatag accttgtgat
     1021 agttgtggaa ctgagttaga acttgaaatt aaagaaaatt tagaactttt tgcaagtgat
     1081 ggtattttta aagatgaagc aaacgaattg agcaatacta tagaattttt cgatggacat
     1141 attgatttaa tagaagttgc tattagtgag cttgaagctt atttgagtga ttatttttat
     1201 tgcataaatt gcaataatta attaaatttt ataaaggaga aaaaatggca gtaccaaaga
     1261 gaagagtgag caaaactcgt gcagctaaac gcagaactca ctataaagtt agtcttccta
     1321 tgcctataaa agacaaagat ggaagctaca aaatgcctca ccgtgcgaat ccaacaacta
     1381 aggaatatta aaatcaatga ttaacattgc cattgatgca atgggtggtg attttggaga
     1441 aaaacccatt atagaaggcg ttttaaaggc actagaagca aaacctttta acgctatctt
     1501 agtgggaaat tctaaaattc taaaaccttt aataccaaaa aaattagaac aatatataca
     1561 atacgaagaa gctagtgaaa ttttttcgat gaatggaaat gccacagatg ctttaaaaaa
     1621 taaagaaaca accatataca aagctattaa tttattaaaa gaaaaaaaag tagatgctgt
     1681 agtttcagcg ggtcatagtg gagcaagtat gtctttggct accttaaggc ttggaagact
     1741 taaaggtatt tcaagacctg ctattgccac tttaatgcca aatatcgtta acagaacttt
     1801 acttttggat gttggagcta atacagattg taaagctgaa aatttatttc aatttgccat
     1861 aatgggtgaa gtttatgcta gagaaattat gcaaattcaa aaaccacgcc ttgctttact
     1921 ttctaatggt gaagaagaat gcaaaggcaa tgaacttacc aaagaaagtc atcagcttat
     1981 gaaaaaaatt ccaaatttta taggtaatgc tgaaggtaga gatattttca atggtgaaat
     2041 agatgtttta gtctgcgatg gttttgatgg aaacgttatc ttaaaggctt gtgaaggtgt
     2101 agcaacagct atttttcagc ttctaaaaaa cgaagtaaag caatctttta tttctaaaat
     2161 aggtgcttta cttatgaagt catcttttaa aaaattaaaa aaacacacag attggcaaga
     2221 atatggcgga gcaccccttc ttggagttaa tggctgcgtg atcataagtc atggaaaaag
     2281 tgattctaga gctattaaaa atgcaatttt tcaagctata aattttagcc aatctcatat
     2341 caatgaactt atagaaaatg aacttgggaa atacaatgct taaagccggt cttaaaagta
     2401 tagcttctta tattccagaa aaaattttaa gcaatgctga tcttgaaaaa atagtagata
     2461 ccaccgatga atggatcact agacgcacag gtattaaaga aagacgcatt gctagtgaaa
     2521 atgaaaattc tagcgatttg ggcacaaaag ctgcattaaa agccatagaa agagcaaatt
     2581 taaaacctga agatattgat gcgattcttg tagccacttt aagtcctgat tattttacta
     2641 tgccttcaac ggcttgtaaa attgcttcaa atttaggact tgtaaatatt agtgcttttg
     2701 atatttcagc agcttgttct ggttttatct atttgcttga acaagctaaa gccttagtag
     2761 aaagtggttt gaaaaaaaat gttttaatcg taggagctga aaaaacaagt tcaattatgg
     2821 attacaatga cagaagcatt tgcatactct ttggagacgg tgcgggtgct ggagttgtaa
     2881 gtttggacaa tgaaaatcat atccttgatg tacatactgc aagcaatggt aattatggag
     2941 atcttttaat gactcaaaga tcgcaaaaat caagtctatg tcaaacactt tctatgcaaa
     3001 tgaaaggcaa tgaagttttt aaaatagcag taaacacgct tagcaatgat gttgtagaaa
     3061 ttttagctaa aaataacatt ttagcacaag aaattgatct ttttattcct catcaagcta
     3121 atctacgcat cattaaagcc gtccaagaaa aactcaatct aagcgatgaa aaatgtgtga
     3181 ttaccgtaca aaaatatggc aatacttcag ctgcttctat acctatggca atgaatgatg
     3241 cctatgaaga aggacgactt aaaaaaggaa atctgatctt actagatgct tttggcggtg
     3301 gttttacttg gggatctgcg cttttaaaat ttggaggaga gaatttttaa ttctctctta
     3361 gctttccaaa agcttgaatt tctaccaaat aaccctctgc taaagcactt cctacacaag
     3421 ctctaacagg tttaggataa tttttaatcc aagcatcata aatttcattc attgcatcaa
     3481 aatcttgcat attagctaac aagatttgaa tttgaatcaa atctcctttg cttgcgccta
     3541 ttttttcaaa caaagcatca agttctgcaa gtgcttcttt ggtttgtttt ttaatatctc
     3601 cgctaggttc aaaagccact tgtcctgcag tcttaaaata tttatcaaaa acaataattt
     3661 gcgacattct atcgcactca tcaaaacgct ttatcatgca tattttcctt gaaattcttt
     3721 cataaattca cacaaggttt ttacctgatc caaattaagc gcattataaa tacttgcacg
     3781 aattcctcct aaaattctat gtcctttaag tcctatcatt ccagcttctt cggcttcctt
     3841 tacaaaaaga ggctctaaat ctttattttt agcaatatta aaactcacat tcattaaaga
     3901 tctgtccttt ttatctgcat gtcctttata aaatccatta cttaaatcaa tacactcata
     3961 aagcatagca gctttttgag aatttttctc atgtacttta tcaagtccgc cttgatttaa
     4021 aagccaatcc atttcaagat taaacatata aatggcaaag gttggaggcg tattaaacaa
     4081 ggactgattc tcagcatgag tcaaataatt taacatacta ggaatttgtt tatttttaga
     4141 tctttctaac atatctttac ggataaaaat acaacttaaa cccgaaattc cagcattttt
     4201 ttgcactccg ccataaaaaa gagcaatatt tgaaaaatct acttttctag aaaaaaaatc
     4261 actcgatgca tccacaatca aaggagtttt agttttagga taattttgat attgagtgcc
     4321 gtaaatagta ttgttagaac aaatataagc ataatcagca ttatctctaa attccactct
     4381 aggaatatga ttaaaattac tttcctcgct acttgctacg gttttaacat tgacacctaa
     4441 aatttgtgct tctttaattg ctttttttgt ccaaactcct gtatttgcat attcacaaat
     4501 cccatttaaa gccaaattca taggaatcat agcaaattgt aaacttgctc caccttgtaa
     4561 aaataatact tcataatcat catttaaccc gtaaagtttt ttagctttct cttgtgctcc
     4621 aaaatgcact tcttcaaata cttttgtgcg gtgagaaatt tccattatag aataacccct
     4681 accctgataa tcacagagtt ctttttgagc ttgctctaaa atttctaaag gtaaagtcga
     4741 tggccctgca ctgaaattga tttttctcat aatctatcct tataaaattt ttgcttcttt
     4801 ttgagaagtt tgagaactta aaataacgat atcatcactc ttaagatctt ctaaatttgc
     4861 tattttacca ttttttctga tacaaataaa ctttttgctt ttattaaaaa aattctcatg
     4921 ttgcaaataa gcattttgca atttatctaa ttttaattca ttataacgca tttgatttgc
     4981 caatagatga tttaattgct tttctatatt atggctttgt tttatttttt catctattat
     5041 ttttggcaaa gaattaaatt tgaaaaattt gcttaaattt aaaagcaaat tttcataatt
     5101 ttgtatttta taattccaaa gttgcattaa tttttcttcc attaaatcca aactttgctc
     5161 tatatccaac ttagaataaa acaaagtatc tatagcagct gaaggcgttg gagctctaaa
     5221 atctgcaaca aaatcactaa taacataatc aatctcatgt cctatggctg aaataatagg
     5281 agtttttgct ttaaaaatct ctcttgctaa attttcatca ttaaaacaaa aaagatcttc
     5341 tctgcttcct ccaccacgtg ctataataag aacatctaaa tccatatcat cggctttttt
     5401 taaagcttgt ataagagaaa aaggagcatt atttccttga gttaaagcat caaaaatata
     5461 aatttttgcc aaaaaatatt ctttttggtg aataagtttt aacatatctt gcaaagcagc
     5521 agaagttttt gaagtgataa tgcctacttt tttaggaaat tttggcaaag attttttaaa
     5581 gcgtggatca aaaagtcctt ctttttgcaa acgctctttt aaagccaaaa actgtgcttc
     5641 caaatcccca aaacctgctt ttttcatact agtagcgata aattgataac gaccactttc
     5701 aggatataaa cttacacttc cacaaagctc taaaaaattc cccacagctg gtttaaatcc
     5761 gacttttaaa ttagctcctt taaacatagc acaagcaatg cttgatcttt catcttttaa
     5821 atcaaaatac caatgtcctg aaccatgcaa agtaattttt gaaatttctc cacttaaaac
     5881 tatatcatca aaatgtgttt ctaataaagc ctttgcttta agatttaatt ctgttggtgt
     5941 catagttttt ttgctataaa cattgaactc acgccaaagc taaaactttt ataatcaagt
     6001 atttcaaaac cagcattttt aagttctaag atgaactctt ccttacttaa aaatccttca
     6061 atagagtttg gcaaatactc ataagcactt ttatttttac tgattatccc acctatactt
     6121 ggtaaaatat ttttaagata aaaatctcta caagctgcta taaatccacc cttttctctt
     6181 tttgtaaatt ccaaaactac caaaatacca tctttttgaa gtactctagc aaattcactt
     6241 aaggcttttt gtctttctac aacattgcga atgccataac taatgcttaa aatatctaaa
     6301 ctttgacttt ctaaaggtaa attttgcgcc cctgcttcta taaattcgac atttggaaat
     6361 ttttcttttg caacatttag catgccacta cttggatcaa tacctttaat atttagaata
     6421 tttttttcca tttttaaagc actctcttgc caaatctcta tcatatcccc tgtgccacag
     6481 gcaatatcag cgatttttaa atcttttttt aaatacaaac tcatcactct ttgacaagct
     6541 tttttacgcc acgctacatc agctccaaag cttaaaattc tattcgcctt atcataagta
     6601 ggtgcaattt gattaaacat ttctataatt ttttcttgtt tttgcatttt tatcctttgt
     6661 aaattttcaa atttttactt gattttttaa gcaatttgca aaatttattt ttattattga
     6721 ttattttcga aaaaatattt ttatccctat ctttgcaata tttttcataa agtttgttta
     6781 aatttttta
//
LOCUS       DAPIWU010000090         6679 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.090, whole genome shotgun sequence.
ACCESSION   DAPIWU010000090 DAPIWU010000000
VERSION     DAPIWU010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6679
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.090"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            282..869
                     /locus_tag="RJ285_001441"
     CDS             282..869
                     /locus_tag="RJ285_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDV7384188.1"
                     /translation="MVVNGVSENKIKAKNKDVNINNGTKYTNTTKSNNISSSENNTQE
                     KITHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSHVKGVTIGYGHLIGQNEWDLYKNG
                     ITLREADKLFKSDLLPFENAVKNSINSSLAQNEFDDLVILCFNIGIDNFKNSFVAKII
                     NAEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAE"
     gene            898..1257
                     /locus_tag="RJ285_001442"
     CDS             898..1257
                     /locus_tag="RJ285_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384189.1"
                     /translation="MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLC
                     PEGNITCDKVVYVGVNKNNGKYIVLNGKSISDVNMNFKGYVFKNGIYEYNIFNNFLYI
                     SKNKQIIQEYRLKLCEK"
     gene            1524..5456
                     /locus_tag="RJ285_001443"
     CDS             1524..5456
                     /locus_tag="RJ285_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384190.1"
                     /translation="MFISSKTELIQTIKNLTINNKEVKQIDFIYPNFSILHAILKNID
                     FHQRKMLSKNQILAMQILEILKQTCDNHNNIEINIHTLNELDAGQNVNLKDLSSSEIC
                     TKVYLEDLEEEIQDKKQGKDFNLFYHTDKNNLCIEFINTLKELAKDSEDITTLDELIE
                     NIDPDDISSEKFDDFKKKVLEKIGNVMESDFFKNSISPTLKNTYEKFINELLEHIKKL
                     AEEKEYEKIKIILSAIAGVAIATVVAVLTGGAGLAILAAGLFSLMGSASEYYEFAQRD
                     YGTLLTPLAAFLATRCAMFIHYINSRLLSCVLIINKKEIIDLSGFGLYLGSDESNIAS
                     NLAYKITLSEEIKSIENIFSEIFLNPEQKNKGYKNTPNDSKSSNLPAFISTQKLSNLY
                     LKNNAILKNLQEDIKQFIYFSYIESPNFNSSKLAEFFAQKNQNAQIDLNTTKMSKNYL
                     IISNIPNKYNAGLSESLTQEIANYNIQDKYRRIKKNIDTSKKTYDSTRDYSEYSIEMP
                     QDENEPYILQLSPFVKISKEAYENSKKAYEDMQKVYKYLTNFVATPQKLPEFAKTAKE
                     KLAISENEPIIEIVKKTENLRHCERINILAYIDYNKKINDKKWLPYFYIKKFFKQNEA
                     KESIIEKEKKIAHQYLTFLKKEFFEKSDKSSFGNYSLMECLFISFVLYQAKLIFPNIN
                     LDLKKYGGSNFVYIKYLDKTYVLWTDECPIYVNNEPTNITAYEVVSQLLKILDKKDYS
                     FVENDSSITIDDFFNELSKDLDTTNTLDKKIIKLKQMYYLDEQKCIKEFMNLDEETQR
                     AFVAWMDIEKQISDLSKLLEQMYGKEYLNKAKEQKTSEIFTYAMLKILLSASPFISFT
                     AQMLWDFNFLKTIEYVIQACIKINKEGFKEFFKEQLGIFAPPKKNSIYHIHIKSNLII
                     KARLQQIEKELIHTKIQMILAQEIKSNLIIQKNTSGLNLFITKIKEYFNEKQIKIYWS
                     DKYMKQLFIYSNQESNISKIALMHSIDIQTQKYTIYTYAKLNKLDLASIVTGEFVGIF
                     LNYLFPTNFKALQEQYESIVYQLYTFKDDSPLAVIRDHFITYPFAINSKFISFDLKKI
                     FYGIDLCTGVFDTHFSFHYEIDQKLEENKEFLLKRLLSYLIIDEKRNATALEDIKEQK
                     YIIDDYTFYFKELKSLELKKCTMYQLPCNHPLFKEFRNKEKQISAFKKDEDSPIHAYN
                     EALQILQDFANGIYNTSKDKTGRYIEDKNKTRRLLEKLNVIGQNNLKAMYMGINGNEE
                     SLKAIGKRENNTSKASANADITSETKTPPNFIGRLATTIIIEDGLYMG"
     gene            5475..>6679
                     /locus_tag="RJ285_001444"
     CDS             5475..>6679
                     /locus_tag="RJ285_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384191.1"
                     /translation="MSETYKIYTPNGIAVKVDKETNKIYFVESLDSHPPAKGNYTEEY
                     SKALFEAHNIKRNSPYKDYKPQYLDPNFYTGQSSTLLEFKEWQNIYLKDPIKGAIAPW
                     TKAEKAYYKSLKTKRERYKYLAIRSGLRSVVIDIPYDAYANVDEKGNLINEEYAYIYD
                     EVSSHRGTLKSYSFFNEWELSALLLGNIKASPTAAVGFKARQQQALFLQAQLGDKNAF
                     KSLGLAVLCSNSFLTGQHWNKLRAKMIYDLHDHHYESLLDEFGMLPFLDEIIGVDWVI
                     DLNRYKFALDEEGRIIWALYDDIEKGKLKDPRDVDSTSESRKEFDHYMDGYVNGMETR
                     FDADIPNDWGDRQATLFKDTLVLSAKLAALTPPQGYPNAPRYYSPERLEIIYKRHKLD
                     KLLDPRIPA"
BASE COUNT         2763 a          823 c          986 g         2107 t
ORIGIN      
        1 atttttgcat aaccattttt tcctatacta ccatctaaac tcttatcaaa ataagctaag
       61 attctattat atttttcctc actttttgga taattattta atttacataa ccttctaaat
      121 tcccaatagc taggatataa aaaggggtat aaaataatat aattaaaatt attggtgata
      181 atagcactaa aatcttttta tattttttca ttctatcacc ttgactagat gaaatcttag
      241 aagatgaaga tagaaaacaa gagctttatg ttggtaaatt tgtggtggta aatggggtta
      301 gtgaaaacaa aataaaagca aaaaataaag atgtaaatat aaataatggc acaaaataca
      361 caaacactac aaaaagcaat aatataagtt ctagtgaaaa caatacccaa gaaaaaatca
      421 ctcatctaag caatgatggt caaaatcttt taaaaaatat agagaagcta agactcaaac
      481 cttataatga tcaaaatgga aaagaaatta cttcacatgt taaaggtgta actatcggat
      541 atggacatct tatagggcaa aatgaatggg atttgtataa aaatggtatt actttacgag
      601 aagcggataa attgtttaaa agcgatttgt taccctttga aaatgctgta aaaaattcaa
      661 taaactcttc cttggcacag aatgaatttg atgacttggt tatattatgt tttaatatag
      721 ggattgataa ttttaaaaac tcttttgttg ccaaaatcat caatgcagag aaaacgggtt
      781 acaaaacatt aaaggaagct tggatggcgt ggaacaaaag tcaaaataaa gtaatgcagg
      841 gactaattaa taggagaaat gctgaataaa gctttacact caaggaggtt atgaaaaatg
      901 gtaattttta aaaatatatt attgttttta ttttttagta cttatttgtt agcacaagag
      961 gattttactc cactagagca atgtacctat gaaaatgaaa agttttggat aaaaatttta
     1021 aatctatgtc cagagggtaa tataacttgt gataaggttg tatatgtggg tgtcaataaa
     1081 aataatggaa aatatattgt cttaaacggt aagtctatta gtgatgtaaa tatgaatttt
     1141 aaaggatatg tttttaaaaa tggtatttat gaatacaata tttttaataa ttttttatat
     1201 atttctaaaa acaagcagat tatacaagaa tatcgtctga aattatgtga aaaatagacg
     1261 caacaaaggc agcaagcaac aacaaatacc tagaatatgc aaaaagttaa aaagatgcaa
     1321 taagaattac aagaagtttt taaagttata aaaatcctaa ttaatgaaat cttagctcct
     1381 aaattttaca acaaatacaa agatttagaa gtagagattg atgataaggg taatgtgctt
     1441 agatggatag gagagattaa tagagacaaa aaatattagc aaataaaaaa tgatataata
     1501 atgctttata taaggaatct tttatgttta taagttctaa aacagagtta attcaaacta
     1561 ttaaaaattt aacaatcaac aataaagaag ttaaacagat tgattttatt tatcctaatt
     1621 tttctatttt acacgctata ttaaaaaata ttgattttca tcaaagaaaa atgctatcta
     1681 aaaatcaaat attggctatg caaatactag aaattttaaa acaaacttgt gataatcaca
     1741 ataatataga aataaatatc cataccctta atgagcttga tgctggacaa aatgtaaatt
     1801 taaaagattt atcaagcagt gaaatttgca ctaaagttta tttagaagac ttagaagaag
     1861 aaattcaaga caagaaacaa ggtaaagatt ttaatctttt ttatcataca gataaaaata
     1921 atctttgtat cgaatttatc aatactttaa aagaactagc caaagattct gaagatataa
     1981 caaccttaga cgagttaatc gaaaacattg atcctgatga tataagcagt gagaaatttg
     2041 atgattttaa gaaaaaagtt ttagaaaaga ttggaaatgt catggaatcg gattttttca
     2101 aaaatagcat aagtcccact ttaaaaaata cttatgaaaa atttatcaat gagttgttag
     2161 aacacattaa aaaacttgcc gaagaaaaag aatatgaaaa aattaaaatc atactaagtg
     2221 ctatagcggg tgttgcaata gccacagtgg tagctgttct tacaggtggg gcaggattag
     2281 ctattttagc tgctggttta ttttctttaa tgggttctgc aagcgagtat tatgaatttg
     2341 ctcaaagaga ttatggcaca cttttaacgc ctttagccgc atttttagcc actagatgtg
     2401 ctatgtttat tcattatatt aattctcgct tgttatcttg tgttttaatt attaataaaa
     2461 aagaaattat tgatttaagt ggttttggat tatatcttgg aagtgatgaa agcaatatcg
     2521 cttcgaattt ggcttataaa atcactttaa gcgaagaaat aaaaagcatt gaaaatattt
     2581 ttagtgaaat ctttttaaac ccagaacaaa aaaacaaggg atataaaaat acacccaatg
     2641 attcaaaatc gagcaattta cccgctttca tttcaacgca aaaattatct aatttgtatt
     2701 taaaaaacaa tgctatttta aagaatttgc aagaagatat taaacaattt atttattttt
     2761 cctatataga aagtccaaat tttaactcaa gtaaactagc tgaatttttc gcacaaaaaa
     2821 atcaaaatgc acaaatagat ttaaatacaa ctaaaatgag taaaaattat ttgattattt
     2881 caaatatccc caataaatac aatgcaggac ttagtgaaag tttaactcaa gaaatcgcca
     2941 actataatat acaagataaa tacagaagaa ttaaaaaaaa tattgatact tcaaaaaaaa
     3001 cttatgacag cacaagagat tatagcgaat atagcataga aatgccacaa gatgaaaatg
     3061 aaccttatat tttacaatta agcccttttg tgaaaatatc caaagaagct tatgagaata
     3121 gtaaaaaagc ttatgaagat atgcaaaagg tttataaata tttaacaaat tttgttgcta
     3181 caccgcagaa gctaccagaa ttcgcaaaaa cagctaaaga aaaattagca atatcagaaa
     3241 atgagccaat aatagaaata gtaaaaaaga cggaaaattt acgacattgc gaacgaataa
     3301 acattttagc ttatattgac tacaataaaa aaataaatga taaaaaatgg cttccttatt
     3361 tttatatcaa aaaattcttt aaacaaaacg aagccaaaga atccatcata gaaaaagaaa
     3421 aaaagatagc tcatcaatat ttaacttttt tgaaaaaaga gttttttgaa aaatcggata
     3481 aatcttcatt tgggaactat tctttaatgg aatgtttatt catttcattt gtcttgtatc
     3541 aagctaagct tatttttcca aatatcaatt tggatttgaa aaaatatgga ggcagtaatt
     3601 ttgtatatat aaaatactta gataaaactt atgttttatg gacagatgaa tgtccaatat
     3661 atgtaaataa tgagccaaca aatattacag catatgaagt tgtatcgcaa ttattaaaaa
     3721 tacttgacaa aaaagattat tcttttgtgg aaaatgatag ttcgataact atagatgatt
     3781 tttttaatga attatcaaaa gatttagata caacaaatac attagataaa aaaataatca
     3841 aattaaagca aatgtattat ttagatgaac aaaaatgcat taaagaattt atgaatttag
     3901 acgaagaaac gcaacgagct tttgttgcat ggatggatat agagaaacaa atatcagatt
     3961 tatcaaagct tttggaacag atgtatggaa aagaatattt aaataaggca aaagaacaaa
     4021 aaacaagtga aatatttact tatgcaatgt taaaaatttt attaagcgct agtcctttta
     4081 tcagctttac agctcaaatg ttgtgggatt ttaatttttt aaaaacaata gaatatgtta
     4141 ttcaagcttg tattaaaata aacaaagaag gatttaaaga attttttaaa gaacagcttg
     4201 gtatttttgc acctccaaaa aagaatagta tatatcatat acacataaaa tctaatttaa
     4261 taataaaagc acgcttgcaa caaatagaaa aagaattaat tcatactaaa atccaaatga
     4321 ttttagcaca agagataaaa tccaatttaa taatacaaaa aaatacatcc ggtttaaatc
     4381 tatttatcac aaagataaaa gaatacttta atgaaaaaca aattaagatt tattggagtg
     4441 ataaatatat gaagcaatta tttatatact ctaatcaaga aagcaatata tctaaaattg
     4501 ctcttatgca tagcatagat atacaaactc aaaaatatac tatttatact tatgctaagc
     4561 taaataaact tgaccttgct tctattgtga ctggagaatt tgtgggtatt tttttaaatt
     4621 atctctttcc aacaaatttt aaagccctac aagaacaata tgaaagcatt gtttatcagc
     4681 tttacacctt taaagatgat tctcctttag cagttataag agatcatttt ataacttatc
     4741 cttttgcaat caattcgaaa ttcattagct ttgatttaaa gaaaattttt tatggcatag
     4801 atctttgcac aggagttttt gacactcatt tttcctttca ttatgaaata gatcaaaagc
     4861 ttgaagaaaa taaagaattt cttttaaaaa gacttttgtc ttatttgatt attgatgaga
     4921 aaagaaatgc aactgcttta gaggatataa aagaacaaaa atatattata gatgattata
     4981 ctttttattt taaagagtta aaatctttag aacttaaaaa atgcaccatg tatcaacttc
     5041 cttgtaatca tcctttgttt aaagagttta gaaataaaga aaagcaaatt agtgctttta
     5101 aaaaggatga agatagtcct attcatgctt acaatgaagc tttacaaatt ttacaagatt
     5161 ttgctaatgg aatttacaat acaagcaaag ataaaacagg aagatatata gaagataaaa
     5221 ataaaaccag aagattacta gaaaaactca atgttatagg acaaaacaat cttaaggcta
     5281 tgtatatggg gataaatgga aatgaagaaa gcttgaaagc tataggcaaa agagaaaata
     5341 acactagcaa agcaagcgca aatgctgata tcacatcaga aacaaaaact ccacctaact
     5401 tcataggcag attagctact actataatca tagaagatgg tttatatatg ggataaatta
     5461 agaaaggata aataatgagt gagacttata aaatttatac acctaatgga atagctgtaa
     5521 aagtagataa agaaacaaac aaaatatatt ttgtagaaag tttagattca catccaccag
     5581 caaagggcaa ctataccgaa gaatattcca aagctttgtt tgaagcacac aacattaaac
     5641 gaaactcccc ctacaaagac tataaacccc aatacctaga tcctaacttt tatacagggc
     5701 aaagttctac tttacttgaa tttaaagaat ggcaaaacat ttatttaaaa gatcctataa
     5761 aaggagctat agctccttgg actaaagcag aaaaagctta ttataaatct ttaaaaacta
     5821 aaagagaaag atataaatat ttagcaataa gaagtggatt aagatctgtg gttatagata
     5881 taccctatga tgcttatgct aatgtagatg aaaaaggaaa tttaatcaat gaagaatacg
     5941 cctatattta cgatgaagta agttctcatc gtggaacatt aaaatcttat tctttcttta
     6001 atgaatggga attatctgct ttacttttgg gaaatattaa agctagtcct acagctgctg
     6061 taggatttaa agcaagacaa caacaagcat tgttcttaca agctcaactt ggagataaaa
     6121 atgcttttaa aagtttaggt ttagcagtat tgtgttctaa ttcttttctt acagggcaac
     6181 attggaataa gcttagagca aaaatgattt atgatttaca cgatcatcat tatgagagtt
     6241 tattagatga atttggtatg cttccttttt tagatgagat tataggagta gattgggtga
     6301 ttgatttaaa tcgatataaa tttgctcttg atgaagaagg tagaatcatt tgggctttat
     6361 atgatgatat tgaaaaaggt aaattaaaag atccaagaga tgtggattct acttctgaaa
     6421 gcaggaaaga atttgatcat tatatggatg gatatgtaaa tggaatggaa actagattcg
     6481 atgctgatat tccaaatgat tggggtgatc gacaagccac tttattcaaa gatactctag
     6541 tattaagcgc caaactcgca gccttaactc ctcctcaagg ctatcctaat gctccaagat
     6601 actatagccc tgaaagacta gaaattattt ataaaagaca taagcttgat aaacttcttg
     6661 acccaagaat tcctgctat
//
LOCUS       DAPIWU010000091         6578 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.091, whole genome shotgun sequence.
ACCESSION   DAPIWU010000091 DAPIWU010000000
VERSION     DAPIWU010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6578
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.091"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..487
                     /locus_tag="RJ285_001445"
     CDS             <1..487
                     /locus_tag="RJ285_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PcfJ domain-containing protein"
                     /protein_id="HDV7384192.1"
                     /translation="PQKESYQNEFLEIYILINDYIKLSYETNNLINLNINSINRITNE
                     HNVLTIELEKKQIPKNKKLKIKEDFINLKLPEEFKLIETHKELYLHGMEQKNCVYTRR
                     REIEDGLSAIYSLNYEGGVYTLEIFKRKNKFAIKEIKAKYNEFANKEVINFVEKSLKA
                     V"
     gene            506..685
                     /locus_tag="RJ285_001446"
     CDS             506..685
                     /locus_tag="RJ285_001446"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384193.1"
                     /translation="MNTNKITDLHIQISKEDLKILDLLLKANEYSNIVFYCENDEEHF
                     IFTEVKLGNYFCINR"
     gene            1044..2963
                     /gene="tet(O)"
                     /locus_tag="RJ285_001447"
     CDS             1044..2963
                     /gene="tet(O)"
                     /locus_tag="RJ285_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HDV7384194.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIVSKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMYVPTNGELYSSDTACSGDIVILPNDVLQLNSILGNEILLP
                     QRKFIENPLPMIQTTIAVKKSEQREILLGALTEISDCDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTYFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            3015..3188
                     /locus_tag="RJ285_001448"
     CDS             3015..3188
                     /locus_tag="RJ285_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HDV7384195.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            3386..4054
                     /locus_tag="RJ285_001449"
     CDS             3386..4054
                     /locus_tag="RJ285_001449"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384196.1"
                     /translation="MHVPEKGKTFAGEVREETVAWSKDTYQLLKQAEQGKVKSYVQDI
                     ALAVLDCKETATSRETFIRLMNERGYGVDWQDSHKYITYTDLAREQAGEKACKIRDNK
                     LEKYYNMDFGKESMEHEFERNARTAEAEQSKRAASRVKPTEPDRAGKQSAQRSVGDVE
                     RELRGIDEAVKSRTSEGRAEQAERRRAEQEAHQRAEAERRAAEEQQRIASRRYIGRDW
                     EPER"
     gene            4349..4771
                     /locus_tag="RJ285_001450"
     CDS             4349..4771
                     /locus_tag="RJ285_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009247731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384197.1"
                     /translation="MRTEYKHNPPIPYSLHDMRVKKIIIQDKTIVLEFEDGYEKLTEP
                     FEQVEGNITIEGVDFDCTCVMLQSKWGNYGKFNGEKLELERFIKRYKNYSFEIVDELY
                     GYNQVLYSGYLSILETEDLVQMDISIYFTGKIIYDTKE"
     gene            4916..6112
                     /locus_tag="RJ285_001451"
     CDS             4916..6112
                     /locus_tag="RJ285_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repa"
                     /protein_id="HDV7384198.1"
                     /translation="MIRLAVKARGSEVQKTMAKYTKRRDKRGYEWKSAYREKEALMLE
                     RGYPEVSPHDFYRELFPAGSLQQEPEDGKGNIIATQIRPSGKGRTRQWVIDDSLKMLD
                     KVIGDRFGLIPPISFYGKSHTKENAHELFAVVVDVDYVGKQQLKNLLKQFGNGVQLRP
                     TYLVSSGKGVHLYYFLQEPVQLYRNREEVLAELKEAFIRRLWNDTSSIRPDSPDITGI
                     YQGFRCVGSQSKLGVDFPVKAYKLSENRYTLEDIKASIPSCKVDLAPLYEKPRRKSTV
                     TLEEAKELYPEWYEKRIVQGEPKQKSKKQGGTWVCNEALYEWWKRKITEEVKAGGRYF
                     SIMALCSYGLKCGISEQKIRRDAYAFLDHLESLTEDEDNHFSRADVKDGIKKPKMIYF
                     YGILKY"
     gene            6389..6469
                     /locus_tag="RJ285_001452"
                     /pseudo
     CDS             6389..6469
                     /locus_tag="RJ285_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117566.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein CotS"
     gene            6464..>6578
                     /locus_tag="RJ285_001453"
     CDS             6464..>6578
                     /locus_tag="RJ285_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein CotS"
                     /protein_id="HDV7384199.1"
                     /translation="MRSSLEKVIKNYSENFSNKRDNDFTQGLIKYLYENDII"
BASE COUNT         2311 a         1006 c         1550 g         1711 t
ORIGIN      
        1 accacagaaa gaaagctatc aaaatgaatt tcttgaaatt tatatactaa taaatgatta
       61 tattaaatta agctatgaaa caaataattt aattaacctt aacattaatt ctataaatag
      121 aataacaaac gaacataatg ttttaacgat agaattagaa aaaaaacaaa ttccaaaaaa
      181 taaaaaactt aaaattaaag aagattttat caatttaaaa cttccagaag aatttaaact
      241 aatagaaacg cataaagaac tttacttgca cggaatggag caaaaaaatt gcgtttatac
      301 aagaagaaga gaaattgaag acggcttaag tgccatttat agtttaaatt acgaaggagg
      361 agtttataca ttggaaattt tcaaaagaaa aaataaattt gcaattaagg aaatcaaagc
      421 aaaatataat gaatttgcaa ataaagaagt tataaatttt gttgaaaaaa gcctgaaagc
      481 tgtttaaaaa atacaaggag ttaaaatgaa tacaaacaaa attacagatt tacacataca
      541 aatttcaaag gaagacttga aaattttaga tttactactt aaagccaatg agtattctaa
      601 tattgttttt tattgcgaaa acgatgaaga acattttatt tttacagaag taaaacttgg
      661 aaattatttt tgcataaaca gatgattagt ggcaggggga aatcctgccg ctttttctgc
      721 tttagtttgt cagcttgaca aataaagggt taaggaatat aattagattc agtattatac
      781 aaggagttaa taaatatgcg gcaaggtatt cttaaataaa ctgtcaattt gatagtggga
      841 acaaaaagta gcagtcccgt ttcactttta atatggggct tagttttttg tacccagttt
      901 aagaatactt ttatcatgtg attttatatg cccgaaaaca tataagtgtt ttggggctat
      961 tggagttatt tacccagtga taggagtatt tatcactggg tatttttatg cccttttttg
     1021 ggtgttgata ggaggaaaat cacatgaaaa taattaactt aggcattctg gctcacgttg
     1081 acgcaggaaa gacaacatta acggaaagtt tattgtatac cagtggtgca attgcagaac
     1141 tagggagcgt agatgaaggc acaacaagga cagatacaat gaatttggag cgtcaaaggg
     1201 gaatcactat ccagacagca gtgacatctt ttcagtggga ggatgtaaaa gtcaacatta
     1261 tagatacgcc aggccatatg gattttttgg cggaagtata ccgttcttta tccgtattag
     1321 acggagcagt attattagtt tctgcaaagg atggcataca ggcacagacc cgtatactgt
     1381 ttcatgcact acagataatg aagattccga caattttttt catcaataaa attgaccaag
     1441 aggggattga tttgccaatg gtatatcggg aaatgaaagc aaagctttct tcggaaatta
     1501 tagtgaagca aaaggttggg cagcatcccc atataaatgt aacggacaat gacgatatgg
     1561 aacagtggga tgcggtaatt atgggaaacg atgaactatt agagaaatat atgtcaggga
     1621 aaccgtttaa aatgtcagaa ctggaacagg aagaaaacag gagattccaa aacggaacgt
     1681 tatttcccgt ttatcacgga agcgctaaaa acaatctggg gattcggcag cttatagaag
     1741 taattgtcag taaattttat tcatcaacgc ctgaaggtca atctgaacta tgcgggcagg
     1801 tttttaagat tgaatattca gagaaaaggc ggcgttttgt ttatgtgcgt atatatagcg
     1861 gaacattgca tttgagggat gttattagaa tatctgaaaa agagaaaata aaaatcacag
     1921 agatgtatgt tccgacaaac ggtgaattat attcatccga tacagcctgc tctggtgata
     1981 ttgtaatttt accaaatgat gttttgcagc taaacagtat tttggggaac gaaatactgt
     2041 tgccgcagag aaaatttatt gaaaatcctc tccctatgat ccaaacaacg attgcagtaa
     2101 agaaatctga acagcgggaa atattgcttg gggcacttac agaaatttca gattgcgacc
     2161 ctcttttaaa atattatgtg gatactacaa cgcatgagat tatactttct tttttgggga
     2221 atgtgcagat ggaagtcatt tgtgccatcc ttgaggaaaa atatcatgtg gaggcagaaa
     2281 taaaagagcc tactgttata tatatggaaa gaccgcttag aaaagcagaa tataccatcc
     2341 acatagaagt cccgccaaat cctttctggg cttctgtcgg gttgtccata gagccgctcc
     2401 ctattggaag cggagtgcag tatgaaagca gagtttcact tggatattta aatcaatcgt
     2461 tccaaaatgc ggttatggag ggggttcttt atggctgcga gcaggggctg tatggatgga
     2521 aagtgacaga ctgtaaaatc tgttttgaat atggattgta ttatagtcct gtaagtaccc
     2581 ccgcagactt tcggctgctt tcccctatcg tattggagca ggctttaaaa aaagcaggga
     2641 cagaactatt agagccatat ctccactttg aaatttatgc accgcaggaa tatctctcac
     2701 gggcgtatca tgatgctcca aggtattgtg cagatattgt aagtactcag ataaagaatg
     2761 acgaggtcat tctgaaagga gaaatccctg ctagatgtat tcaagaatac aggaacgatt
     2821 taacttattt cacaaatggg cagggagtct gcttgacaga gttaaaagga taccagccag
     2881 ctattggtaa atttatttgc caaccccgcc gcccgaatag ccgtatagat aaggttcggc
     2941 atatgttcca caagttagct taacagcttg caaaagtcat ataaaatgag atttgaaagg
     3001 attagagact aattatgatg aaatgcgaat ggatattgtg tcctgtttgt gggagcaaaa
     3061 cccgtaataa aattaggaag gacactgttt tggagaatta tcccctttat tgtccaaaat
     3121 gcagacaaga aagattgatt aaagttgaca acttgaagat aactgtcatc aaagagccag
     3181 acgcttaaga cgcagagccg atgaaattgt ggaacaattc acgaatcatc ggctcttttt
     3241 gtttcgtatt tgaaagaaca aactcaccaa ataaaaaaaa cgatattcgg gtgggttatt
     3301 ttgttatacc ctaaattacc ctctgagtaa gcacgacctt aaagacttaa aggaacggtg
     3361 caacgagcag agctgggaac agggcttgca tgtgccggag aaaggaaaga catttgctgg
     3421 agaagtccgg gaagaaacgg tggcatggag caaagacacc taccagcttt tgaaacaggc
     3481 agagcaggga aaggtcaaaa gctatgtgca ggatattgcc cttgcggtgc tggattgtaa
     3541 ggaaacagcg accagccggg aaacctttat ccggctgatg aatgaaagag ggtacggggt
     3601 ggactggcag gacagccaca agtacatcac atataccgac ttagccaggg aacaggcagg
     3661 agaaaaggct tgtaaaatca gggataacaa gctggaaaaa tactacaata tggattttgg
     3721 aaaggagagt atggagcatg agtttgagag aaatgcacga acagcagaag cagagcagtc
     3781 caagagagca gcttcaagag ttaaaccgac agagccggac agagctggaa aacagtctgc
     3841 tcaaagaagc gttggcgatg tcgagcgaga actgcgagga attgatgaag cagtcaaatc
     3901 aagaacaagt gagggcagag cagaacaggc agagagacgc agagcagaac aggaagctca
     3961 tcagcgagct gaagcagagc gtagagctgc tgaagaacag caacgaattg cttcaagacg
     4021 ctatatcggg cgagattggg agcctgaaag atgaggttaa ggaaaacacc gtccaagagg
     4081 ttagaaaggc gttacaggcg aatatagagg ctatacagag ggctacaaag cttcttgaga
     4141 agcagtctga tacacttacg agcgtgatga agcagaagat ccgggagctt gaggaaagta
     4201 agaacagttt ttttagatat gagggcttga agttgtacct gttttggggc ggtatggtct
     4261 gcaatatttt agtgtttctt atgctgttgt atggtatgat tagtaagtaa aaagaaatcg
     4321 ataaattaga atttgacggg gaggtctcat gaggacagaa tataaacaca atccgcccat
     4381 tccatatagt ctgcatgata tgcgggtcaa aaagattata attcaagata aaacaatagt
     4441 ccttgaattc gaggacggat atgaaaaact tacagaacct tttgaacagg tcgagggaaa
     4501 catcacaatc gaaggtgtgg attttgattg tacctgcgtt atgttgcaga gcaaatgggg
     4561 aaactatgga aaattcaacg gtgagaaatt agaactggaa cgctttataa agagatacaa
     4621 aaactatagc tttgaaattg tagatgaatt atacgggtat aatcaagtat tgtattctgg
     4681 ttatttatct atcttagaaa cagaagattt agttcaaatg gacatttcaa tttactttac
     4741 gggcaaaatt atttacgata caaaagagta acaaattcca gtttgtcggt acgaagaaaa
     4801 aggtgcaaaa atgtattgat aagattagcg gtcaaggcga gagggagtga ggtgtagata
     4861 ttgacatcaa aaaggcactc ccttatactt gacggaaaaa ggtaaaaaaa actcattgat
     4921 aagattagcg gtcaaggcga gagggagtga ggtgcaaaag actatggcaa aatacaccaa
     4981 aaggagagat aaaagagggt atgagtggaa gtctgcttat cgggagaaag aagcccttat
     5041 gttggagagg ggatacccgg aagtaagtcc tcatgatttc tatcgggagt tgtttccggc
     5101 tggcagtctc cagcaagagc cggaggacgg aaaaggtaat attatagcga cacagattag
     5161 accgtctggc aaaggaagaa cccggcagtg ggtaattgat gatagtctga aaatgctgga
     5221 taaggtcata ggagataggt ttgggctgat accgcctatt agtttttacg gaaagtcaca
     5281 cacgaaagag aacgctcatg agctgtttgc ggtggtggtg gacgtggatt atgtaggcaa
     5341 acagcagtta aagaacctgt tgaagcagtt tgggaatggt gtgcagcttc gtccgactta
     5401 tcttgtcagc tccggcaagg gggtacatct ttactatttc ttgcaggagc cggttcagtt
     5461 gtatcgaaac cgggaagaag tgcttgcgga gctgaaagaa gcctttattc ggcggctatg
     5521 gaatgatacc agctctatcc gtccggacag cccggatata accggaattt atcaaggttt
     5581 ccggtgtgtg gggagtcagt cgaagctggg tgtagatttc ccagtaaaag cctataagct
     5641 gtcagagaac cgttacacgc tggaggacat aaaagccagc ataccgagct gtaaggtaga
     5701 ccttgctccg ttgtacgaga agccgagaag aaaaagtacc gttacgctgg aagaagcaaa
     5761 ggagctgtac ccggaatggt atgagaagcg gatcgtgcag ggagagccga agcagaaaag
     5821 taagaagcag ggcggtacgt gggtatgtaa cgaagcttta tatgagtggt ggaaacggaa
     5881 aataaccgag gaagtgaaag ccggagggcg ttacttttct attatggcgt tgtgctctta
     5941 tggcttgaag tgtggcatat ccgagcagaa gatacggaga gacgcctatg cgttcctgga
     6001 ccatttagag agccttaccg aggacgagga caaccatttc agccgggcag atgtgaaaga
     6061 cggtataaag aagccaaaga tgatttattt ttatggtatt ttgaaatatt agaaaaaaat
     6121 gaaatcaaga tatatcccaa aaaaatgact tataatcaaa tgatggaaga gtgtaagaaa
     6181 aacgatatat acattataaa gccattatac tctttgggat atacctacaa taataatagg
     6241 gaagatttta agaactacaa ctaaaataag tcaaaaggaa taagtttgaa aaatactatg
     6301 tattcatatt tgctcaatga taaaatcaaa aatcattcta tgattttatg cacagaaatc
     6361 gagtgcaaaa aatgcggaga aaagatttat gttgagtttc agccgaatga aaaatttatt
     6421 ttcaaatgtc ctaattgctc gagaaaaaat agaaaggttt tttatgcgtt ctagcttaga
     6481 aaaagtgata aaaaactata gtgaaaattt ttcaaataaa agagataatg attttacaca
     6541 gggtttaata aagtatcttt atgaaaatga tatcatag
//
LOCUS       DAPIWU010000092         6445 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.092, whole genome shotgun sequence.
ACCESSION   DAPIWU010000092 DAPIWU010000000
VERSION     DAPIWU010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6445
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.092"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(8..745)
                     /locus_tag="RJ285_001454"
     CDS             complement(8..745)
                     /locus_tag="RJ285_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7384200.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVNIKNKNYECSKI"
     gene            complement(738..1964)
                     /locus_tag="RJ285_001455"
     CDS             complement(738..1964)
                     /locus_tag="RJ285_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384201.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQGDKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            2091..2675
                     /locus_tag="RJ285_001456"
     CDS             2091..2675
                     /locus_tag="RJ285_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDV7384202.1"
                     /translation="MQTIDQIFQTQIDIKKSIFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNITIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(2719..3102)
                     /locus_tag="RJ285_001457"
     CDS             complement(2719..3102)
                     /locus_tag="RJ285_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384203.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQIEDYSSSGDSDFMDMLNK
                     ADEKSSGDALNSSSSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLAQQGANEQSKNNTLLNDLLNAI"
     gene            complement(3177..3512)
                     /locus_tag="RJ285_001458"
     CDS             complement(3177..3512)
                     /locus_tag="RJ285_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384204.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(3502..5079)
                     /locus_tag="RJ285_001459"
     CDS             complement(3502..5079)
                     /locus_tag="RJ285_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDV7384205.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADALFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            complement(5209..5625)
                     /locus_tag="RJ285_001460"
     CDS             complement(5209..5625)
                     /locus_tag="RJ285_001460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384206.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEINSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
     gene            complement(5638..6270)
                     /locus_tag="RJ285_001461"
     CDS             complement(5638..6270)
                     /locus_tag="RJ285_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HDV7384207.1"
                     /translation="MTKFLSICSLIAMLLSGCGSDFPGQPSDVARVQQNKYPNGNLKE
                     EIPYNKDSRIHGLKRAFYDNGQLRAEENYKNGKKDGISREYSRNGQLLEEVHFKDNRG
                     YGDFASYYENGNMRAKGKLLGYNEDGMPEFEGNYKEYYENGTLMCDYNFDNKGKFDGV
                     QKRYDENGALEDEENYKNGLKNGVFREYKKGEIVREEEYKNGILVAKPKN"
     gene            complement(6279..6428)
                     /locus_tag="RJ285_001462"
     CDS             complement(6279..6428)
                     /locus_tag="RJ285_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HDV7384208.1"
                     /translation="MSRKHSNWLIISLLNLFFGWTIIVWLVCLIWSFTGSFKQTIIIK
                     EKNEK"
BASE COUNT         2283 a         1151 c          751 g         2260 t
ORIGIN      
        1 atgggggcta tattttagag cactcgtaat ttttattttt tatattaaca aattgacttt
       61 taagtgtttt aaaatctgga atataagcat aaccgctaag cgtatctata acgatacaaa
      121 gagcatgctt ttttgataac aaacgtataa tgcaatctga attattcttt gctaaagttt
      181 tttcatatgc ataattggca ttttttaacg gagaatacac tctgcccatt tcatcaaata
      241 ctaatctagt aaatcctgaa caagatcctt tgaattcaac cttttctatt ccgaatcttt
      301 ttgtaagatt aaatctttgt gtagtttttt catcatcttt actaataact ccactttgac
      361 ctgaattcat taatttgtta tgattgatta catcaacagc aatttctcta tctatattga
      421 tttcagtttt acctaaatta gcatttccat cgccattttt atccaagaaa atagtatatg
      481 tttgatcata acctgtggca gctgatttta taaaataaat ctgccattta cttttaaacc
      541 actctctttt tgcgatagcc aactcatcaa ctcttatgcc ttcttgcatc atggctaaac
      601 tttgggtata ttggatatca ttaagaattt gtattgcacc ttctagtaga ttgtcttttt
      661 ttaagtaaag actgcctaaa ttaaaaacta tacctaaaat gagaattata aacacaaatt
      721 ccaacaaact gaaagcttta atcatagttt aaaatctgat atactttttc atattttcca
      781 agttttactt taacaatttt tttgtccata tcatgcttat cgccttgttt taaagctttt
      841 aaataaaact tattgctatt ttttattcca taaaatcgca atcttttttg caaacttggg
      901 gctgttgcaa gttctaaaac atcttgtttt tttaattcta gtgccaattc tttagcaaaa
      961 tgataattat tggcaaaatg acgatttgga ttgtttataa aataatacaa taattgatta
     1021 gcgacgatta aaaagtaaca aaatatcaaa aaaattatag aacattctat aaagatttta
     1081 taccttaatc gaaaaactgg taatctcacc ctataacttt gcattaaagt ttttataagc
     1141 aaaggagtgc aaataacaca aaaaggcaaa aaatcatcta aaaaaagttt ttgtcttaaa
     1201 gaaagcaaca aacaaaatac aaatgttacg ctcattaaaa accataataa atttttatat
     1261 ttttgaaaag tcaaacgata aatagtataa aaaaaataca caaaaaccaa aggagaaaaa
     1321 catgcagcaa aaattcctaa ggtatctaaa aaataacctc ttggacgacc acctgtatca
     1381 aaaccataaa aactgatact cgctccaaac aaaacaagag ataaggtaaa taaaatagca
     1441 tttcttttat aaatcccaaa aaagaaaaaa gttaaaaata aaatattaaa agatttatca
     1501 acaaataata ctataatcaa taatatataa aaaagccatt ttttttcata ttcgtaagca
     1561 cataatatag caagggttaa aaaaatcacc aaagatgcgg cattaaccag taaagcactt
     1621 gcaacagtac ccggcaataa aacaaataac aataaagaaa aaaaagcatc aattttagtt
     1681 ttagtatatt ttaaagctag caaatacaaa agcaaacaac ttaaaaaatg aaaaaataaa
     1741 aaaggaagcc ttaaaccaaa atcattttgc ccaaaaataa aagttccaaa atgagatata
     1801 taataaagca aactatggga aaaaataagt gatttaccct gctcaccaaa ataaatatca
     1861 gcttcatcag cactaatact cagtgttgaa attccataaa gcaaagccaa caaatcaaga
     1921 ctaagtaaaa tgatgataag tttataattt ttgatttttt ccataatgaa aattttacaa
     1981 aattaaactt aaaatatcaa tgcaaatcat ataaatatca aatatcttaa aaattaacat
     2041 caaattgatt ttagttttta taagtataat tttaaacaaa aaaggcaaaa atgcaaacta
     2101 ttgatcaaat ttttcaaaca caaatcgata ttaaaaaatc tattttctta tcttttcttt
     2161 gcccttttaa agattttaaa tttttaatag aaacgctaaa aaaagaacat ccaaaagctg
     2221 ttcattttgt ctatgcttat cgtgttttaa atgattttaa tcaaattgta gaagataaaa
     2281 gcgatgatgg agagcctaaa ggaacttctg gaatgccaac tttaaatgtt ctaaggggct
     2341 atgatcttat caatgcggct ttaatcactg taagatattt tggtggtata aaacttggta
     2401 cagggggact tgtaagagcc tatagcgatg cggcaaatgc cgtgatcaat aattcttctt
     2461 tactttcatt tgaattgaaa aaaaatataa ccattgctat tgatttaaaa aatttaaatc
     2521 gttttgaaca ttttttaaaa acttattctt ttaatttcac aaaagatttt aaggattgca
     2581 aagctatatt acatatcaaa ttaaatgaaa aagaggagca agaatttgaa attttttgta
     2641 aaaattttgc accttttgaa atagagaaat tataaattct tgcaagtaaa tacaaaagct
     2701 ccaaaatgga gcttttgatt aaattgcgtt caataaatca tttaacaaag tattattctt
     2761 actttgttca tttgcacctt gttgcgcaag atcattgtga acgctagcac tttgagctct
     2821 catagacaac tcgccttcat tttgtctaaa acgataagcg taaacatttg acatttgagc
     2881 ataattactt aaatttgaat ttgagttttg cgcattactt tgaaaactgc tgctagaatt
     2941 taaagcatct ccgcttgact tctcatccgc cttatttaac atatccataa aatcagaatc
     3001 tccagatgaa gaataatctt caatctgttt atccacctgt ttatactgac cactaatagc
     3061 atcgtattca tacgagctaa tcgttctata atttacctgc atagttttct cctttcaaaa
     3121 tatgcaaaaa ctatacaagc aaaaagcgtt cctttttatg taaaaatcaa tgttttttaa
     3181 tcatggtgag taggcaaatg ctccacatca agctcattat tggctataaa ttcttccttg
     3241 gcttttttac agttttcatc acgcattttg cggtattcat tacgaatggt gatttcttta
     3301 tcgcttagag gtctatcttc taaaaaactg atatgaaaat aagtatcatc gctctttgaa
     3361 taagttttat aaaaatctat atagtcaaaa taatccttgc cattatcaaa ctctacgact
     3421 tcttctatat aaatcgtagg cccaaaaccc ttgtgatttt gtgtataatg cccaaaacct
     3481 gcgctgtatt gaattctaaa tttagccatc attttctcct aaaaattctt gataagttcc
     3541 acgaaaatct gtaagcttac cattttctaa atgccaaatt ctattagcaa aagcagaaac
     3601 taactcccta tcgtggctga tacaaagcac tacacctttg aaattataca aagcttcacc
     3661 taatgcaata atactttcaa gatctaaatg gttatcaggt tcgtctaaaa gcaagaaatt
     3721 cggacgctct agcattaaac gagaaagcat taaacgatgt ttttcacccc cacttaaact
     3781 tgctgccatt ttttcttgat cgctgccact aaaaagcatt ctacctaaac acttgcggat
     3841 ttcatctaga tctttaaatt tttcactcat cagccattca taaagtttca aattttcaca
     3901 aattaaatta cttgtatctt gaggaaaata tccaagttct atagttgccc caagatgtat
     3961 agatccacta tctggactta tagcatgggc gatgattttt gctaaagtac ttttacccac
     4021 accatttgcc ccaatcaaag cgattttatc atttttttct atttttagct ccaaatttga
     4081 aaacaattgt ttatcataag ccttacctat acctttaatt tctaaaactt cattacctat
     4141 ttcacgattg gttctaaata ctatactagg atctctacgg cttgaaattt taatctcttc
     4201 aagctctagt ttttcaagcg ccttagcacg gcttgtggct tgttttgcct tagaagcatt
     4261 tgcactaaaa cggcgaatga aattttctaa ttcttctctt tcttttaagg ttttatcgcg
     4321 tttaagctca gcttgttttg ccaaaagcgt tgaagccata taccaatcat cataatttcc
     4381 cgcaaaatca cgaatttgtt taaaatccac atctaaaatt cttgtgcaaa ttttatttaa
     4441 aaaatgccta tcatgagaga tgacaaccaa agttccttca tgtcttaaaa gttcattttc
     4501 aagccaagaa atcgcctcta aatcaaggtt atttgtaggc tcatctaaaa aaagcgcatc
     4561 ggcacctaaa aacaaaactt gagctaacaa aactttaaat ttatccgcac tttgtaaggt
     4621 gctcattaaa gcatcgaaat ctttaatctt taaagaactt aaaatttttt cacaacgtgt
     4681 ttcacaatca taatttggat cttcttcagc cgttattatc tcaagctcac ctaaacgctc
     4741 attgatctca tcagtaaatt cctcgctcat ataaagcttt tctttttctt ttaaggcctc
     4801 atataaacgc ttatttgcac acatcactgc atctttgatg gtgtagtttt caaaagcaaa
     4861 ttgatcctgt cctaaaactg cgattttcaa gccttcatca aatactattt caccactact
     4921 tgactcaatt tctcctgaaa gaatttttaa aaaagtcgat tttcccgcac cattagcacc
     4981 gataagtccg tatctttgtc ctcgaacaag ttttaaatta acattttcaa ataaaagctg
     5041 atttgcaaaa cgcatagtaa gattttttac ttcaaccatg attttcctta aattttttac
     5101 ttataaaaat ttttaagaaa ttgtatcaaa aaaagacttg aaattaatta agtataaaat
     5161 attagtaagt catgaaatta attctattga cttactttaa taaaaatatt attggaaatc
     5221 tccattgata taagttatat ctgtaatttt cacttgattt atgttagaaa ccttataaac
     5281 aacactccaa agaccttttc tctgttcccc ttttaatgca gcattaatcg tagccataca
     5341 agaatcaaaa ttaagatcaa aatttgaaat ggaattaatt tcgatcatat cagtgtaatt
     5401 taccattcca tcatgcttgg ctatttcttt gaggcctttt gcataatctt cataatcaat
     5461 cccttgggct ttaagtccgg ataattcata aagattttta aaaatttcac taggaatttt
     5521 ttctttaaga tttgaaacaa ctgccgtatt atcacatttg tctaatgagt tggcctgaag
     5581 caaggcaaac cccattaaga aaaataaaat tactttttta aacatatcta aactcctcta
     5641 atttttaggt tttgctacta aaataccatt tttatattct tcttctctta caatctcccc
     5701 ttttttatat tctctaaaga ctccattttt aagtccgttt ttataatttt cttcgtcttc
     5761 taaggcgcca ttttcatcat aacgcttttg tactccatca aatttacctt tattatcaaa
     5821 attataatca cacattaaag ttccattttc ataatattcc ttgtaattac cttcaaattc
     5881 tggcatacca tcttcattat agccaagtag ttttcccttt gctctcatat ttccattctc
     5941 ataatagctt gcaaaatcac catatccgcg attatcttta aaatgcacct cctcaagtaa
     6001 ttgcccattt ctagaatatt ccctgctaat tccatctttt tttccatttt tataattttc
     6061 ttcagctctt agctgaccat tgtcataaaa agctcttttt aacccatgta ttcttgaatc
     6121 tttattatag ggaatttctt cttttaaatt tccatttgga tatttgtttt gctgaactct
     6181 agccacatcg ctaggttgtc caggaaaatc acttccacaa ccacttaaca acatcgcaat
     6241 taaactacaa atgcttaaaa attttgtcat tttttctcct atttctcatt tttttcttta
     6301 ataataatag tttgcttaaa acttcccgta aaagaccata ttaaacaaac aagccaaaca
     6361 ataatagtcc aaccaaaaaa caaatttagc aaagaaatta tcagccaatt agaatgcttt
     6421 ctgctcaaac caataatagc gggca
//
LOCUS       DAPIWU010000093         6316 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.093, whole genome shotgun sequence.
ACCESSION   DAPIWU010000093 DAPIWU010000000
VERSION     DAPIWU010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6316
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.093"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..361
                     /locus_tag="RJ285_001463"
     CDS             <1..361
                     /locus_tag="RJ285_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384209.1"
                     /translation="ESAKIRIQNQLSYKLGQAMIVSSKSILGYIRMPFVLSYIYDKYK
                     QEQKIYQEKIKKDPSLKLPSLENYPDYKEALTFKNHLSYKLGQALIKANKTWYKGGYI
                     KMLFEIRELKQKAKKGK"
     gene            361..918
                     /locus_tag="RJ285_001464"
     CDS             361..918
                     /locus_tag="RJ285_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HDV7384210.1"
                     /translation="MAIEFDIQESKILKGVFIITPNSFKDLRGEIWSVFSSKDIESLL
                     PSNLKFVLDKFTLSKHNVLRGIHGDHKSWKLVTCVYGEVHQVVVDCRKDSPTYLKWER
                     FIINENNRKLILIPPYFGNAQYVSSKNDALYYYKWAYEGEYVDAKDQFTYAWNDSRIA
                     IDWSTDTPILSDRDIDATINDHIKG"
     gene            923..2017
                     /locus_tag="RJ285_001465"
     CDS             923..2017
                     /locus_tag="RJ285_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDV7384211.1"
                     /translation="MNKQSKIYVAGHTGLIGSTILKKLQQDGFCNIICKTHQELDLMN
                     QEAVKYFFEKEKPDCVFFCAAKVGGMLAQLNQRAEFLYNNLVMQSNVIHYSYLNGVKK
                     LIYLGSICIYPEEVQLPIKESSLLTGKLQYNNEPYAIAKIAGLKMCEFYSLQYGVDYI
                     SIMPVSIYGSNDNFDIQTAHVQAAIFRKIYLAKLLNECNYKELIDDLGVKTKEEAFMI
                     LKQNNINDKSVKLLGTGNSRREFLHCEDLAEASIYIMKNISFNEVVEREGWNQGNAHI
                     NIGTGEDISIKELAYMIKDILEYRGEVLFENKMENDGTARKVIDTNKIRALGWHYKIE
                     LRDGLVRMYHDYKKGVKQNEKIYTSFINLG"
     gene            1980..3146
                     /locus_tag="RJ285_001466"
     CDS             1980..3146
                     /locus_tag="RJ285_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HDV7384212.1"
                     /translation="MKKYTLASSTWDEKELQAIQDVIKSDMFTMGKKVAEFEKDFAKF
                     VGSKYAVMTSSGSTANLIATAALFYTKNPKLKRGDEVIVPAVSWSTTYYPLYQYGLKL
                     KFVDIDLETLNYDLEALSSAISDKTKMIMVVNLLGNPNDFDAINDLIKGKDIILLEDN
                     CESMGAEYKGNQAGTFGIMGTFSTFFSHHMATMEGGFVVTDDEELYHILLCLRAHGWT
                     RNLPKENLVANKSDDWFSESFRFVLPGYNVRPVEMSGAIGIEQLKKLPMFLKHRRENA
                     KLFCEYFQNHPEFIIQKEIGSSSWFGFSLVIRPNSKLQRKDIIKKLEENGIEYRPIAT
                     GDFTQNEVIKYFDYEIHNELKNAKYIHERGFFVGNHQFSISEQINLFKKVLDNL"
     gene            3143..4174
                     /locus_tag="RJ285_001467"
     CDS             3143..4174
                     /locus_tag="RJ285_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HDV7384213.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSIQKLFESKRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRLLKAKDGYDPVVHVCSSSEVYGRAKVGVKLNEDTTFHGASPYSI
                     SKIGTDYLGRFYGEAYGIKTYVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVV
                     KVGNLSSVRTFQDCRDAIRAYYLLSLESEKGKVPCGEAFNIAGEEAFKLPEVIDILLG
                     FSTRKDIKVEEDEERLRPIDADYQMFDNTKIKSYINWKPEIPARKMFEDLLNHWRKEI
                     SMGRIPLNR"
     gene            4178..5197
                     /gene="hddA"
                     /locus_tag="RJ285_001468"
     CDS             4178..5197
                     /gene="hddA"
                     /locus_tag="RJ285_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HDV7384214.1"
                     /translation="MMIIRSQTPLRLGLAGGGTDINLYCDQYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYSEYESKEFLENDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFSEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELETRIVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKTLSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            5185..5790
                     /gene="gmhA2"
                     /locus_tag="RJ285_001469"
     CDS             5185..5790
                     /gene="gmhA2"
                     /locus_tag="RJ285_001469"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDV7384215.1"
                     /translation="MENLNSYIKEHFQESILVKEQILKDENLITLIKNTSLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALSTDTSILTAISNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGASGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            5778..>6316
                     /locus_tag="RJ285_001470"
     CDS             5778..>6316
                     /locus_tag="RJ285_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HDV7384216.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINNKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIQEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEVYVL
                     NGDTFFDIDLSKLKLNGSKICLALKQMNDFDRYGTVNVDGQGFVISFEEKIFKTQGLI
                     NGGIYLLTKDIFNEFDLEK"
BASE COUNT         2352 a          750 c         1220 g         1994 t
ORIGIN      
        1 tgaaagcgct aaaattcgca ttcaaaatca gctctcatat aaactaggtc aagctatgat
       61 agttagctct aaatctatat taggctatat aagaatgcct tttgtgttat catatatata
      121 tgataaatac aaacaagagc aaaaaattta tcaagaaaaa attaaaaaag atccttcttt
      181 aaaattacct tctttagaaa actatcctga ttataaggaa gctttaacat ttaaaaatca
      241 tctttcttat aagctaggtc aagctcttat aaaggctaat aaaacttggt ataagggagg
      301 gtatattaag atgttatttg aaattcggga attaaaacag aaagcaaaaa aagggaaata
      361 atggcaatag aatttgatat acaagaatca aaaattttaa aaggtgtttt tataataacg
      421 ccaaatagtt ttaaagattt aagaggggaa atttggtctg ttttttctag caaagatata
      481 gaaagtttat taccttcaaa tttaaaattt gtgctagata aatttacatt atctaagcat
      541 aatgtattaa gaggtataca tggggatcat aagtcttgga aattagtaac ttgtgtatat
      601 ggtgaagtgc atcaagtggt agttgattgt agaaaagact ctcctactta tctaaagtgg
      661 gaaagattta tcattaatga aaataataga aaattgattt taataccacc atattttgga
      721 aacgctcaat atgttagttc aaaaaatgat gctttatatt attataaatg ggcttatgaa
      781 ggtgaatacg ttgatgctaa agatcagttc acgtatgcat ggaatgatag tagaattgct
      841 atagattggt caacagatac ccctatatta tcagatagag atatcgatgc aacaatcaat
      901 gatcacataa aaggctaaaa ttatgaataa gcaatctaaa atatatgttg caggtcacac
      961 gggtttaata ggatctacaa ttttaaaaaa attgcaacaa gatggttttt gtaatattat
     1021 ttgcaaaact catcaagaat tagatttaat gaatcaagag gccgtaaaat atttttttga
     1081 aaaagaaaaa cctgattgtg tctttttttg cgcggcaaaa gtaggaggaa tgcttgctca
     1141 gttaaatcaa cgtgcggaat ttttatataa taatcttgtt atgcaaagta atgtgattca
     1201 ttattcttac ttaaatggag tgaaaaaact tatatactta gggagcattt gtatttatcc
     1261 cgaagaagtg caattaccta tcaaggaaag tagtttactt actgggaaat tgcaatataa
     1321 taatgagcca tatgctattg ctaaaatagc aggacttaaa atgtgtgaat tttatagttt
     1381 gcagtacggt gtggattata tttcaattat gcccgttagt atttatggct ctaatgataa
     1441 ttttgatata caaacagcac atgtgcaagc tgccattttt agaaaaattt atttagcaaa
     1501 attgttaaat gaatgtaatt ataaagaatt aattgatgat ttgggagtta aaacaaagga
     1561 ggaagctttt atgattttaa aacaaaataa tattaatgat aaatctgtaa aattattggg
     1621 tactggtaat tcacgaagag aatttttaca ttgtgaggat ttggcagaag ctagtattta
     1681 tattatgaaa aatatatctt ttaatgaagt tgtcgaacga gaaggatgga atcagggtaa
     1741 tgctcatatt aatattggaa caggagagga tatatcaatt aaagaattgg cttatatgat
     1801 taaagatatt cttgagtata gaggagaagt gctttttgaa aataagatgg aaaatgatgg
     1861 aactgccaga aaagttatag atactaataa aattagagca ttaggatggc attataagat
     1921 agaattaaga gatggtttgg tgagaatgta tcatgactat aaaaaaggag taaaacaaaa
     1981 tgaaaaaata tacactagct tcatcaactt gggatgaaaa agaattacaa gcgatacaag
     2041 atgttattaa aagcgatatg tttactatgg gtaaaaaggt ggctgaattt gaaaaagatt
     2101 ttgctaaatt tgtgggttct aagtatgctg ttatgacaag ctcaggttct actgcaaatt
     2161 tgatagcaac agcagcatta ttttatacta aaaatcctaa gttaaaaaga ggagatgaag
     2221 taatagttcc tgctgtatca tggagtacta cttattatcc actttatcag tatggtttga
     2281 agttaaaatt tgtagatata gatctagaaa cactaaatta tgatttagaa gcattaagta
     2341 gtgctattag cgataaaaca aaaatgatta tggttgtcaa tttattaggc aatcctaatg
     2401 attttgatgc gattaatgat cttataaaag gaaaagatat tatcttgcta gaagataact
     2461 gcgaatcaat gggtgcagag tataaaggaa atcaagctgg aacttttggc atcatgggaa
     2521 ctttctcgac atttttttct catcacatgg ctacgatgga aggtggtttt gttgttacag
     2581 atgatgagga attgtatcat atattgcttt gtttaagagc gcatggttgg acgagaaatt
     2641 taccaaaaga aaatttagtg gctaataaaa gcgatgattg gtttagcgaa tcatttcgtt
     2701 ttgtattgcc aggatataat gtgcgtcctg tagaaatgag cggagctata ggcatagagc
     2761 aacttaaaaa attacctatg tttttaaaac accgcaggga aaatgctaaa ttattttgcg
     2821 agtattttca aaatcatccc gaatttatta tacaaaaaga aatcggaagt agctcttggt
     2881 ttggattttc attagtgatt agaccaaatt ctaaattgca aagaaaagat attattaaaa
     2941 aattagaaga aaatggcata gagtatcgtc ctatagctac gggtgatttt actcaaaatg
     3001 aagtgattaa atactttgat tacgaaattc ataatgagct taaaaatgca aaatatattc
     3061 acgaaagagg gttttttgta gggaatcatc agtttagcat tagtgaacaa attaatttat
     3121 ttaaaaaagt attggataat ctatgaaaaa aacagcatta attactggtt ttacagggca
     3181 agttggctcg caaatggcag attttttact agaaaataca gactatgatg ttataggcat
     3241 gatgcgttgg caagagccaa tggataatat ctatcattta agcgacagga taaacaaaaa
     3301 agataggatc agcatttttt atgctgattt aaacgattac tcaagtattc aaaagctttt
     3361 tgaaagcaaa agacctgatg tgatctttca tctagccgca cagtcttacc caaaaacttc
     3421 ttttgatata cctatagaaa ctctacagac aaatatcata ggcacagcaa atattttaga
     3481 aaatattaga ttattaaaag ctaaagatgg ttacgatcct gtggtgcatg tttgctcttc
     3541 tagtgaagtt tatggcaggg caaaagttgg tgtcaagcta aatgaagata cgacttttca
     3601 cggtgcaagc ccttatagta taagtaaaat tggcacggat tatttaggaa gattttacgg
     3661 tgaggcctat ggtataaaaa catatgttac cagaatggga actcatagtg gtccaaggcg
     3721 ctctgatgta ttttttgaaa gcactgttgc aaagcagatt gccttgatcg aagcagggta
     3781 tcaagagcct gttgtaaaag taggaaactt atctagtgta agaacctttc aggattgtcg
     3841 tgatgctata agagcttatt atctactttc attagaaagt gaaaaaggca aggttccttg
     3901 tggagaagct ttcaatatag ccggtgaaga agcctttaaa cttcctgaag ttattgatat
     3961 acttttaggt ttttctacaa gaaaagatat caaagtggaa gaagatgaag aaagattacg
     4021 tcctattgat gcagactatc aaatgtttga caatactaaa atcaaaagtt atatcaattg
     4081 gaagccagaa attccagcta gaaaaatgtt tgaggattta ttaaatcatt ggagaaaaga
     4141 aatctccatg ggcagaatcc cacttaatag gtagcagatc atgataatcc gttctcaaac
     4201 acctttgcgt ttaggtttag cggggggggg tactgatata aatttatatt gtgatcaata
     4261 tacaggttat gttttaaatg cgactatatc tttatacata cattgtactt tgatcgaaag
     4321 agaagatgga aaaatcattt ttgattcgcc tgatacaaat tcttactctg agtacgaaag
     4381 caaagaattc ttagaaaatg atggaaaatt agatattttt aaaagcattt acaatcgcat
     4441 tgtaaaagat tttacaaaaa aacctttgag tttttctttg catacttatt cggatgtacc
     4501 aagtggtagt ggcttgggcg gaagctcaac cttagttgta ggtgttataa aagctttttc
     4561 agaatggctt aatttacctt taggggaata tgaaatcgct aagcttgctt atgagataga
     4621 aagagaagat ttaggcatag taggcggagc acaagatcaa tacgctgcaa cttttggcgg
     4681 ctttaatttt atggaatttt ataacaataa aagagtcatt gttaatcctt tgcgtataaa
     4741 aaactggatt gcaagtgagc ttgaaactag aattgtgctt tattttacaa atatcacaag
     4801 agaagcaaaa gatatagaag aacataaaaa aggaaaactt ggagatgaaa aatctctcga
     4861 agctatgcac gccataaagc aagatgcaat aaagatgaaa gaagctttgt ttaaggcgga
     4921 ttttgatact ttggcgaaaa ttttaggaaa atcttggcag tcaaaaaaaa tcatttctga
     4981 aattgttagt aatgatgagc ttgaaagaat ttataaacta gctatagata atggagctta
     5041 tagtggcaaa accagtggag caggagcagg tgggtttatg tttttctttg tggatcctac
     5101 taaaaaatac aacttaatca aaactttaag caaagagcaa ggttatgtgc aggatttttc
     5161 atttacaaaa gaaggggtta aatcatggag aatttaaatt catatataaa agaacatttt
     5221 caagaatcaa ttttagtaaa agagcaaatt ttaaaagatg agaatttaat aactcttatt
     5281 aaaaatactt cattagaagt cataaaagct tataaaaatg gtaacaaaac tttattagca
     5341 ggaaatggtg gcagtgctgc agatgcacag catatcgcag gggaatttgt aagtagattt
     5401 tattttgata gaccagggat cgcaagtatt gcactttcaa cggacacgag tatattaact
     5461 gctatcagca atgattatgg ttatgaaaat ttgtttgcaa gacaagtgca agctcaagga
     5521 gttaagggag atgtttttat aggaatttct acaagtggaa atagtaaaaa tattttaaag
     5581 gctttagagc tttgcaaaca aaaagaaatc ataagcatag gcttaagcgg agctagtggc
     5641 ggggctatga atgagctttg tgattattgt ataaaagtac cttcaacttg cacgccaaga
     5701 attcaagaag cacatatttt aataggacat attatttgtg ctatcgttga agaagagctt
     5761 tttggtaaag gtttttcttg caagcaataa tactttgtgg tggcttagga acaaggctta
     5821 aaagcgttat aaaagacatt cctaagccta tggcacccat aaataataag ccttttttag
     5881 aatttatttt tgagtatctt aaaaagcaag gcataaaaga agttatctta gcagtatcat
     5941 acaagtatga ggtgatacaa gaatatttta aagatgagtt tttaggtata aaaataaaat
     6001 acagtataga aaaagaacct ctaggaacag gcggagccat aaaagaggct ttgaaattta
     6061 taaaaaatga agtttatgtt ttaaatggcg atactttttt cgacatagat ttaagtaaat
     6121 taaagctaaa tggaagtaaa atttgtctcg ctctaaaaca aatgaatgat tttgatagat
     6181 atggcacggt aaatgttgat gggcaaggtt ttgttatttc ctttgaggaa aaaatattta
     6241 aaacacaggg tttaattaat ggtggaattt atcttttaac taaagatatt tttaatgaat
     6301 ttgatttaga gaaaaa
//
LOCUS       DAPIWU010000094         6306 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.094, whole genome shotgun sequence.
ACCESSION   DAPIWU010000094 DAPIWU010000000
VERSION     DAPIWU010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6306
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.094"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(1..769)
                     /locus_tag="RJ285_001471"
                     /pseudo
     CDS             complement(1..769)
                     /locus_tag="RJ285_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(975..2696)
                     /locus_tag="RJ285_001472"
     CDS             complement(975..2696)
                     /locus_tag="RJ285_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HDV7384217.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNYIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            complement(2698..3426)
                     /locus_tag="RJ285_001473"
     CDS             complement(2698..3426)
                     /locus_tag="RJ285_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HDV7384218.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKIRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMES"
     gene            complement(3562..4266)
                     /locus_tag="RJ285_001474"
     CDS             complement(3562..4266)
                     /locus_tag="RJ285_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HDV7384219.1"
                     /translation="MRIFLALFLFFNSLLALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMYESAKGMSKDLNQAYKFYDKACKLGLASACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGESCYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            complement(4266..6095)
                     /locus_tag="RJ285_001475"
     CDS             complement(4266..6095)
                     /locus_tag="RJ285_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDV7384220.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSAEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     ALKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFEALLINKPILTKI
                     AKNFLEQSQILIQEKSKFLDLKKAELRKRRVQILNVRESIKED"
     gene            complement(6085..>6306)
                     /locus_tag="RJ285_001476"
     CDS             complement(6085..>6306)
                     /locus_tag="RJ285_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7384221.1"
                     /translation="EILNSLNINGAFFEFLNDKLKHYEKNQKSKLESLEKVLQSLKNQ
                     DANILNSFEENLEKIEKLKQLEMGLLNAD"
BASE COUNT         2028 a         1156 c          773 g         2349 t
ORIGIN      
        1 tttatatcta taatttttgc cgaagtgttt tgagaaagaa atttattaaa ttctcctgca
       61 ctatcatcac taaatttcat accaaaaaga agttctaatt cttcactttt accaaattta
      121 ttttctaata atttttttaa aagctcgttt ttagcattgt catctttgta agtttctttg
      181 tttttgcttt cgccttgaat ggctttgaag ggtttttcat ctgggttttg accactttca
      241 ttgctttctt gggtagaatt tgagctttgt tgtttattta aaaacctatc tatctcttct
      301 tgagtaagtg gtttaacatc aagtgcgtca ataaatcgtt ttttctttca tctttttcag
      361 caacccatat tcttgcgaat tcacccacac ttgtaagagt ttttagaaga ttgcctttgc
      421 gtattctgga aatcttatct cctggaataa attcaatatt atcaatctca tatgctccgt
      481 taagaatttc ccattcctct tcagttaatt tatcttttcg cattcgctca agcaaggaat
      541 tttcaacttc tttaacatct gggtctccat tatagccgta tttgttcgca tattctttac
      601 taagcatttc tccaaagtat ttttgcacaa aatcttccca ataagcatct tcttcacttt
      661 ttggctcatc ttttttagta taagtatatt cattattttc atctttttta atgcttaaag
      721 cattatttgg ataattgata ttaggatagt gagaattaaa atttaccata gaaaaccctt
      781 tttttatgat attttattaa aataatcttg gattccaacc accaagagca gactccattt
      841 gcctttttgt ataattgtag ctcgaataag aatttatacc attaatcatt tttgccttcc
      901 ttgatattat actatatcgg aagaaaatta aaaatttata atcttgagag ttttcaaaaa
      961 ctctcaagtt attatcaagc taagcttttt ccacttttat gatattttaa aataccttca
     1021 gcacagcgat aagccaaagc tcccacagta tcagttggat tatatccact attgtgttgg
     1081 aaatttcctg ctcctacaac aaaaagatta tccgcatccc agtgttgtaa ataagtatta
     1141 accacactag tttctctatc tgcacccatg gttgttccac ctgtgttatg agtagattga
     1201 taaggcacaa cgctataatc cttaagataa gcaccttttt tgattgattt tactccttgc
     1261 attctttttg ctacctcagc tgttttatct gtgataaatt tatgcaaagc tctatcttga
     1321 tcggtgaaat tataagttaa gcgtaaaagt ggcataccaa aagcatcttt ataagttgga
     1381 tcaagactta aataattatt cttatgaggc aaagaagcac cttgtcctgc tacggtaata
     1441 gctcttgtga aattatagtt taatgctttt ttaaattcag caccccaagt tggagctcct
     1501 gctggaagtg gggctgattg tatagggcga gttccaagct gaacgctata aatcatagct
     1561 ccatgaagga atttttcctt agaatgatca aaattatctc cgttaaaatc atcactcgta
     1621 gttcctaaag cacctgaacc catgaaggtg ttaaattgct catcaaagaa agctgttgta
     1681 cccatgttca tttgataaca ataatttcta cctaaagttc ctttacctgt ttttggatcg
     1741 tattgctcac ctatgttgct taccattaaa agcttagcat tgttaaacat ataacttgta
     1801 agtacaacta tatcagcagg ctggatatac tctttcatcg ttctagtatc gacaaatttt
     1861 acccccgtta cttttccgtc ttttttaaga atttgcgtta cattactata agtgcgtatg
     1921 gtgtatttac ctgtgctcat agcctttgga attactgtgt ttaaaggact tgcttttgca
     1981 ccatactcac aaccaaaacg ctcacaatac gcacagtatt gacaaggagc taaatcttga
     2041 ccatcagggt ttgtatagcc acctttagaa tttgaagctg gcaaacgata agtgtgtaaa
     2101 tttgaacttt ttgctgcact ttcaaatcgt ttaagcattt tagtattttc aagaggttct
     2161 tgtggataag gactggatct aaaagctccc attttttccg ctaaaggatt tggttcacct
     2221 gataccccac aggttttttc aaatctatca taataaggct ccatatcctt ataagtcacg
     2281 ccccaatctt gcaaggtata atcattacct aatttattac catatctttg tttgcttagg
     2341 gtttgaattt caaagtcata aggcataaac ctaaaagtcc aaccattcca atgcacccct
     2401 gcaccgccaa cattattacc caataaaaac gaacccattt tacgataagg taaggctaaa
     2461 ccactaggat catggcgaaa agtcacagtg tcttttgagc aatcttgcat caaaccataa
     2521 ttaatcccat atctccactc atcatggata taattaaaat tttcagtact ttgcatatgt
     2581 ccgcgttcta aactaagtac attcaaacct gctttagtaa gctctgcagc cactatacct
     2641 ccagtccatc ctgctccaac tgttactaca tctacttttt ttaatacttc agccatttta
     2701 actctccata tctgctaaac ccataggttc aatgttaaaa aattcatcac ttgcaatttt
     2761 atccacatag ctcatttgtg cgcctggata ttgcatcatt ctccaaccat ttttattatc
     2821 atttccgcca taaattggat cagctaaaac tccagctact gtcatatctc ttaaaagtgt
     2881 gaaaaaataa gaagatttaa aacctgtagt ttgaattttt cctttttcaa aatcgcttaa
     2941 aattttatcc tgatctccac ctttaagcaa agaaaaagat tttttataac gcttttgagc
     3001 attttcttca agagcatgca cgccttctaa aaaaatatct ttgcgttgca taggagtttg
     3061 atagccttgt tcggctttgc cctccatgaa aggcccttgc atatattctc tatcattata
     3121 accataagca ctagctagct gattatcgat aaaataaggc acgcctaaac ctatagctcc
     3181 ttctccttgc tcatctttag gataaattct ttcacaggct gcacttaagg tatcaaattc
     3241 agtttgagtt tgaaaaaaca ttctacctct aattttattt gattttcctt gtgaagcttg
     3301 atgcgaatgc gtaagttctg ctgcctttaa aacagcaccg ccacctatag tgctagctgc
     3361 tactacagaa ccacctagaa gccctagttt aaaaaagctt ctgcgatcaa taatattgtc
     3421 ttgcattact tctccttgat aataatttaa acaagattat attagtccta ttaatataaa
     3481 tttaacttta aaaagcgata aattttgtgt tattcttaat tttatttaag aatatctttg
     3541 aaagcaatga aaatagaact tttaataaag ctctatatct ttagaattaa gttctttata
     3601 agctgcacaa gcttcttgat gtttttgatc acaagccata ccaaaatatc ttttcgcctt
     3661 tgttaaatct tgtttttcta gttgattata gcgtcctaac aaataacaag actcaccaaa
     3721 acctaaagtg caagatttag aataaaaagc aagggcagat tttacacttg ctttaacaag
     3781 ctctccttta tcatataaag accctaattg ataacaagct cttgcatttt ttaaatcaca
     3841 agatctttta taaaaacttg aggccatttg tccatctttt tctttttcat aaaataaagc
     3901 tatattatta caacttaacg attctcctaa agtacaagct ttattaaaag ccaaaagagc
     3961 ttcattttta taaccttgat tttgcaaaag caaagccata ttagaacacg cacttgctaa
     4021 acctaatttg caagctttat cataaaattt ataagcttga tttaaatcct tactcatacc
     4081 cttagcactt tcgtacataa aagctaaaga aaaacaagct ttagaaatat ctttttcaca
     4141 aaggctttta aaaatttcat aagctttatc aaatttattt gcttcataaa gtttcaaacc
     4201 ttcttctaat tcacttaatg caagtaatga attaaaaaat aaaaataaag ctaaaaatat
     4261 tctcatcaat cttcctttat actttctcta acatttaaaa tctgtactct tctttttcga
     4321 agttctgctt ttttaagatc taaaaattta cttttttctt ggattaaaat ttgactttgt
     4381 tctaaaaaat tttttgcaat ttttgtcaaa ataggcttat taataagcaa agcttcaaac
     4441 tcataaacat ttaattcatt taaaactctt tcataaattt cacttttttt aggataaaaa
     4501 agtacaaatt cagaactatc aagctcataa agaacacggc tttcattgat tttacgacta
     4561 aaaaatgcaa ggcttagttt tgtagcattt tcataatttg taaaagcctt aagatttaat
     4621 ttttcaaaaa ataaatcaag ttctaaaata cttttaaata aaagctcttt aaaatctttc
     4681 aaaaagtact catcgcttgc attgcaaaaa gctcttaatt cactaaaatt tttatcactt
     4741 tggaaaatgt gatctttttg tatgtttgaa aattctgctt taaaaagcaa aatttctctt
     4801 tcaagtatgt ttataaaatc ttttaatttc atcttgattt cttcaaaaga tttataaagt
     4861 tcatttttga tttttttaaa ctctttactc atcacatcac tattataaaa catcgccaaa
     4921 aaagcatcgt cgcttgaaat ataaggcgct ttataatcat atcttgtgta taaatctttc
     4981 tttaaaaatc ctttgctttc tttgtaaaaa taagcatctt tttccttaac acttgcaaaa
     5041 atttcactag aaattctttc gctaatgctt ttaagctgtt ctaaaatctg atgatttaaa
     5101 atttcaatct cttttaaaaa attttcatac gctaaaagta aatgcttttc ataactttga
     5161 aattgattta ataaacgatc aaaaatacct acaaaaagtt ggttttcatc ttctaaaatt
     5221 tcgcataaat ttaaaatttt tcttttaaca aatttttctt ttaaagctgt tgtatctagc
     5281 tgagttaaaa aatcaagcaa agattgaaaa ttagattttt catagctttg ctcatcttta
     5341 gcttctttgc aagaaatagc aataagctca ttaaaatatt ttaaaaacac actttttgca
     5401 taatttaaaa cattatctag ctcttctgcg cttaatttat ctttttgatt taatacacaa
     5461 atgctatttt ctcctaaaag ttctaaattt gcttttatgg catcttcttc acttttttta
     5521 cctgcattat caattaaact taaccaaatc gccccatgaa tatttttaag ttcatcaaga
     5581 gttgttaaag tatcattttc atttgcattt aaacctggag tatctacaag agtgattttt
     5641 tcaagtaaag gaatgggtgc aaaaatatgc aaactttttg cttgttttac ttcatttctt
     5701 tgatccgtat aaaaggctaa tttttctata tttgtgataa tatcacttcc atcttcaaat
     5761 tctactctta aaaaatattc ttttgcatag cgtaaaaaag taggtttaaa agtaacagga
     5821 acaacacccg taggcaaaca atcacgccct aagatcaaat ttagcaaact tgatttacca
     5881 cttgaaaact gccctataat agcgatatta acattcttat ccaaagaaaa cacaagctct
     5941 tttaattcat tttctaaagc ataacttgcg tgcataaaag gctcgttaag ttccttgcaa
     6001 agctcttgaa tacgcccttt aaaactatca tcaaaactca cgctataggt attttcatag
     6061 gcttttataa aatcatttaa aagattaatc tgcatttaaa agccccattt caagttgttt
     6121 taatttttca attttttcta aattttcttc aaaagaattt aaaatattag catcttgatt
     6181 tttcagactc tgtaaaactt tttcaagact ttctaatttt gatttttgat ttttttcata
     6241 atgttttaat ttatcattta aaaactcaaa aaatgctcca ttgatattta aagagtttaa
     6301 aatttc
//
LOCUS       DAPIWU010000095         6217 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.095, whole genome shotgun sequence.
ACCESSION   DAPIWU010000095 DAPIWU010000000
VERSION     DAPIWU010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6217
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.095"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            50..520
                     /locus_tag="RJ285_001477"
     CDS             50..520
                     /locus_tag="RJ285_001477"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDV7384222.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGVTININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEKKGYI"
     gene            522..1724
                     /locus_tag="RJ285_001478"
     CDS             522..1724
                     /locus_tag="RJ285_001478"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HDV7384223.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVAKRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNIEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            1725..2261
                     /locus_tag="RJ285_001479"
     CDS             1725..2261
                     /locus_tag="RJ285_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HDV7384224.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            2267..2866
                     /locus_tag="RJ285_001480"
     CDS             2267..2866
                     /locus_tag="RJ285_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDV7384225.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            2868..4010
                     /gene="folP"
                     /locus_tag="RJ285_001481"
     CDS             2868..4010
                     /gene="folP"
                     /locus_tag="RJ285_001481"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDV7384226.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKQKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            4011..5954
                     /gene="ligA"
                     /locus_tag="RJ285_001482"
     CDS             4011..5954
                     /gene="ligA"
                     /locus_tag="RJ285_001482"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDV7384227.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCINESAFNELVKE"
     gene            5935..>6217
                     /locus_tag="RJ285_001483"
     CDS             5935..>6217
                     /locus_tag="RJ285_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384228.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSFFLAIFGLVSLFLN"
BASE COUNT         2220 a          711 c         1239 g         2047 t
ORIGIN      
        1 gatttgattt aggttaaaat tatatccttg agatttaagg aacaatattg tggaaaacga
       61 gaaaaattat agaccaaatg ttgcagctat tgttttatca agttcttatc cttttgagtg
      121 taagattttt atagctagaa gaagtgatat ggataatatt tggcaatttc cacaaggagg
      181 tattgataaa ggtgaaagtg tcaaaaacgc tttatttaga gaactaaaag aagaaatagg
      241 cactgatgag gttgaaatca ttgccgagta tccagaatgg ttgagttatg attttccgag
      301 taaaattgtt aaaaaaatgt atccttatga tgggcagatt caaaaatatt ttttagtgcg
      361 tttaaaacac ggtgttacaa tcaatattaa taccaagcat cccgaatttg atgattatca
      421 atttgtgagt gttaaacaaa tttttgaaat gattaatcat ttcaaaaaaa atatttatgt
      481 taaagtgatc aaatattttg aaaagaaagg ttatatctaa aatgcttata gttcaaaaat
      541 atggtggaac aagcgttgga acacttgagc gtatcgaagc agtagccaaa agggttatcc
      601 aaagtgcgca acagggtaat caacttgttg ttgtagtatc tgcaatgagt ggggtgacaa
      661 atactcttat tgagcaagct gaatatttta gtaaaactcc taatggtaaa gatatggata
      721 tgcttttaag cagcggagag cgtgtaacaa gcgctttact ttctatcgcc ttaaatgaaa
      781 agggttgtcc tgctatatca ttttctggga gaaaagcagg aattattaca gatagtgttt
      841 ttacaaaggc aagaattcat catattgata caaaagcgat aaaatcagaa cttcaaaatg
      901 gtaaaatagt cgttatagca ggttttcaag gtgtagatga ggaaggtaat gtaactacct
      961 tagggcgtgg tggaagcgat ttaagtgctg tggcggtagc aggtgcttta aatgcggatt
     1021 tgtgtgaaat ttatactgat gttgatgggg tttatacaac agatccaaga attgaaccaa
     1081 aggcaaagaa attggataaa atttcttatg aagaaatgct tgaacttgca agtttaggtg
     1141 caaaagtttt gcaaaatcgc tctgtagagc ttgcaaaaaa attaaatgtt aatttagtaa
     1201 ctagaagtag ttttaacaat aacgaaggaa caatgataac aaaggaagat ggaatggaac
     1261 aagctttagt aagtggtatt gctttggata aaaatcaagc aagagtgact ttaagaaata
     1321 tagaagataa gcctggaatc gcagctgaaa ttttttctgt tttagcaaat gaaaatatta
     1381 atgtagatat gattatacaa aatgttggag ttgatggtgc tacaaatttg ggttttacgg
     1441 ttcctcaaaa tgaacttgaa ttagccaaaa atgctatgca aaaaatttta agctcaaaaa
     1501 caactataga aagtgatagt gctgtagtaa aagtttctat agtcggcgta ggtatgaaat
     1561 cacattcagg agtggcaagt aaagctttta aagctttagc tgatgagggg attaatatcg
     1621 gtatgatttc tactagtgaa ataaaaattt caatgatagt tcatgaaaaa tacggagaac
     1681 ttgcagttag agcactacat gagtgctacg gacttgataa ataaatgagt gattttttaa
     1741 gttttactct tgaaaatatt cgcaatggcg gagcttttat ggcatggttg gagtcgcgtc
     1801 gtttagaatg ggctcctttg atggctgcaa gacttaaata tcttttagaa ggacgcactt
     1861 ttgtattaat gtgtgatgaa caaagatctt ggtatgaaga gtatttttta aaaaatataa
     1921 attcaaaagc cactcgtccc atgctccctt ttgtgtcgtt aaattcttta tgtaagaaga
     1981 aagtacaaag ttcagaagat atagctttac ttaatgactt gcttgacatt tcttttccta
     2041 atggttatgt atatttttat ataggaagtg cttctgataa taaatcttta atcgctaaat
     2101 caagagatga tagtttattg tggctttttg atgagcagtt acaagatagt ttttatttaa
     2161 attctaaaga taaagacttg gatatcaagc ttattagttt atatcaactt tttgatgtaa
     2221 gtttggatgc aatattattt tccaaggtgc aattaggata aatattttgt ttattagtaa
     2281 gattattatc agtgaagatt ttttaggtat taaggaagaa atgattaata attttggtat
     2341 taaaaaatta agatttttta taccacaaaa tgaattttta cttgatgatg caagagcggt
     2401 tgaaaaagaa agctatatcg cagaaactga agaaaaaatt attgttttaa tggcggattc
     2461 ttataggata gaagcacaaa attttttact taaactcctt gaagaacctc caaaaaatat
     2521 taaatttctt attgtgatac cttctaaaaa tttactttta cctactataa aatcacgtct
     2581 tatttgtgaa aaaagaaaag ttgaaaagga agttaaaaaa cttgatttag atcttaaaag
     2641 aatggattta agaatgcttt ttgatttttt gcaaaaaaat gaaaatttgg ataaaaatga
     2701 acttatggat caaatcgcat tgcttgctaa agaatgtgtg aaatataaag attttaacgc
     2761 tgaagaatta gagttttttt atgaaagtta tgagcttgca aaattaaatt ctaaaagcgg
     2821 ggtgctttta gctactcttt tattaaatta ctatacaaag aaataaaatg aaatttttta
     2881 aaatcaatcc aaacaccgat tttaatttgc tttgttcttt cataaaccct cataaaatgg
     2941 gacaaaagat catgagtgaa aaaacaaaaa ttcattttat ttttatcaaa gatatttcta
     3001 ctcctgcggc aaatatttta aaacaagatg ctttaagagt aggagctgaa cttattactc
     3061 ataaagaagt aattactgca aaaatcactc attcaaatgc gcttttaatg gcaagtaaag
     3121 agcaaattca aaagcttgtt gtcaaagaaa aacttcaaga ttttggactt aaaaatttgg
     3181 ctcttttttt gcaaaaagat tttttaaaac agaaaaaagc cgagcttatg gcagtgatta
     3241 atgtcaatga agacagtttt aatgcaaaaa gtcgtgtgag tgaagaagac tttgaaaaaa
     3301 ggcttaatga ctttcttgct ttaaagcctg aatatatcga tataggtgcg gtaagttcaa
     3361 gacctgggag tgagtattgt ggcaaggaag aggaatttaa aagactgaaa aaagtacttg
     3421 acttaattta tgagaaaaat tattacgaac aagcaatttt tagtttagat agttttgatg
     3481 aatattgtct agaatatgct ttaaataagg gttttaaact cattaatgat attacaagtt
     3541 taagaaatct taatctagcc aaacttgcaa gtaaatatgg ggcaaaatat tgcttaatgc
     3601 acatgcaaaa caatccaaat aacatgcaag ataatccttt ttatgaagat ttgcttgatg
     3661 agatgacttt gttttttaaa gaaaaacttg agcttttaga aagttttgga gtaaaagaaa
     3721 gtattttaga tgtaggtatt ggttttggaa agagtgcggg gcataatatg attttaatca
     3781 aacacttaga acattttttg caatttaata aacctttact tataggtgcg agtcgtaaaa
     3841 gtgtgattaa tgcgtatttt caaagcgaga ttaaagatcg tttagcggga actttatatt
     3901 tgcatttaaa ggcttttgaa aatggtgcta gtattataag agtgcatgat ttatatgagc
     3961 ataaacaact ttttgcttta gcgcaggcaa tggataatat aggagtttag atgaaaaaag
     4021 aagagtattt agaaaaagtt gctttagcta atttgtggat gagggcatat tatgaaaaag
     4081 atgaaccctt ggctagcgat gaagaatacg atgctttaat cagagaatta agagtttttg
     4141 aagaacaaaa taaagatgaa atttcaaaag actctccaac gcaaaaaata gctcctacta
     4201 tacaaagcga gtttaaaaaa atagctcatt taaagcgtat gtggtcgatg gaagatgtgt
     4261 ttgatgagag tgagcttaga gcttgggcaa aacgcgcaaa atgtgaaaaa aactttttta
     4321 tagagcctaa atttgatgga gcgagtttaa atttgcttta tgaaaatggt aaattagtaa
     4381 gcggcgccac taggggcgat ggcgaagtgg gtgaggatat aacgcttaat gtttttgaga
     4441 tagaaaatat acctaaaaat atagcctata aagaaaggat agaaattcgt ggagaagtgg
     4501 tgattttaaa agatgatttt gagaaaatca acgaaaaaag agccctttta aatcaaagtt
     4561 tatttgccaa tccacgcaat gctgcaagtg ggagtttaag gcagcttgat acaagcatca
     4621 ctaaagaaag aaatttgaaa ttttatcctt ggggagtagg ggaaaatacc ttaaatttca
     4681 ccaaacacag cgaggtgatg caatttatca gagagcttgg ttttttaaag gatgattttg
     4741 taagactttg cgctaattta gacgaagttt taaaagctta tgatgagctt ttagttctaa
     4801 gagaaaaaaa acctatgatg atggatggaa tggtggtaag agttgatgat cttgcacttt
     4861 gtgaagaatt aggctatacg gtaaaatttc caaaatttat ggcagctttt aaatttcctg
     4921 cgcttgaaaa aaccacgcgt ttaatagggg taaatttaca agtaggaaga agtggagtga
     4981 tcactcctgt ggcggtttta gaacctgtaa atttagatgg ggttgtagta aaatcagcca
     5041 cccttcataa ttttgatgaa attgcaagac ttgatgttaa aatcaatgat tttgtaagcg
     5101 tgataagaag tggcgatgtt atccctaaaa tcactaaggt ttttaaagag cgtagagaag
     5161 gtttagagat ggaaatttca cgccctaagc tttgtcctac ttgccaaagt gagcttttgg
     5221 atgaaggaac tttaataaaa tgtcaaaata tagattgtga agatagactt gtaaattcta
     5281 tcattcattt tgtttctaaa aaatgtctta atatcgacgg actgggagaa aatatagtag
     5341 aacttttata caagcacaaa aaaatcacta cgcttgagag tatttttcat ttaaaattta
     5401 atgattttga aggtttggaa ggctttaaag aaaagaaaat taacaatctt ttaaatgcca
     5461 tagaacaagc aagagaatgt gagctttttc gttttatcac agctttagga atagagcata
     5521 ttggcgaggt tgcggctaaa aaattaagtt taagttttgg taaagagtgg tacaagcaaa
     5581 gctttgaagc ttatgccaat ttagaaggtt ttggagagca aatggcttta agtctttgcg
     5641 aatttacgcg tgttaatcgc acaagaattg atgagtttta caagctttta aatttgaaaa
     5701 tagaaaaact tgaaatcaaa agcgatggtg tgatttttgg taaaactttt gtgattacag
     5761 gcactctttc acgcccaaga gatgagttta aggctttgat agaaaagctt gggggtaagg
     5821 taagcggctc tgtttctaaa aagactgact atgtgctttt tggagaagag gcaggttcta
     5881 aacttagcaa ggctaaagag cttgaagtaa aatgtataaa tgaaagtgct tttaatgagc
     5941 ttgttaaaga atagttctta tattttaacg cttttaagcc tttttggctt tttgctaact
     6001 tggcaaagga gtgctttttc tttatttttt ttaattccta tttttttaac acttttttgg
     6061 gaattctttt tatttttaaa gcttagaaaa aatattataa aagaagctac tttgattaag
     6121 ggaagtttgt tttatcgtat tagtatgggg gatttttatc tttatatttt tagctttttt
     6181 ttggcgattt ttggacttgt ttctttattt ttaaatt
//
LOCUS       DAPIWU010000096         6142 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.096, whole genome shotgun sequence.
ACCESSION   DAPIWU010000096 DAPIWU010000000
VERSION     DAPIWU010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6142
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.096"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            765..3591
                     /locus_tag="RJ285_001484"
                     /pseudo
     CDS             765..3591
                     /locus_tag="RJ285_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
     gene            complement(3859..4140)
                     /locus_tag="RJ285_001485"
     CDS             complement(3859..4140)
                     /locus_tag="RJ285_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
                     /protein_id="HDV7384229.1"
                     /translation="MAKYKIYYHKDFIKAYKKISDEERKITDEVIVKLSNDENLEPKY
                     KDHQLKGVLKDFRECHIKSNLLLIYQKHNNELELNILKLGSHSKLFKKY"
     gene            complement(4127..4354)
                     /locus_tag="RJ285_001486"
     CDS             complement(4127..4354)
                     /locus_tag="RJ285_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384230.1"
                     /translation="MTLIIENVNENFLPAFKGLAKSINAKCKISKPKLSSFESKILNA
                     SKELDKEKKVNTALSFNSHQDFVKAYQNGKI"
     gene            4627..4767
                     /locus_tag="RJ285_001487"
     CDS             4627..4767
                     /locus_tag="RJ285_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384231.1"
                     /translation="MKTTEYNTQQKNNKEYLAEREAVKKNYGKNGKRVRKTCYKCGVS
                     KT"
     gene            4774..5062
                     /locus_tag="RJ285_001488"
                     /pseudo
     CDS             4774..5062
                     /locus_tag="RJ285_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887129.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
     gene            5262..5405
                     /locus_tag="RJ285_001489"
     CDS             5262..5405
                     /locus_tag="RJ285_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384232.1"
                     /translation="MCKDQEYIEQRKVLWEKSFEAFKDDKVYQKEQLELAEAGINDGL
                     EED"
     gene            complement(5959..6099)
                     /locus_tag="RJ285_001490"
     CDS             complement(5959..6099)
                     /locus_tag="RJ285_001490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384233.1"
                     /translation="MIEMMIPAYKDEISNVAKENEKINQMIKLAIEKMFKNDFLNKIN
                     NF"
BASE COUNT         2161 a          869 c         1020 g         2092 t
ORIGIN      
        1 aatataactc aaaagacttt gataaagata gtatcttttt atctaatatg attatgaatg
       61 tgagattgaa gtaagtataa gtaaatgata gatttggtaa atttaaatct tgttaagttt
      121 attatttagt tcaaataaaa atataaaaaa atatagaaat tcaatagaaa gaagagaagc
      181 ttagttaaaa gtttgtttgg taagccacaa gggagtttcg ccccttaaaa aaggggcaag
      241 gctaataagc cttgacagta attatataaa ttagtataat tataagtacg aaacgaaaca
      301 tagtttcacc ccctttctag ggcgtgatta tgccacaggg ttgcagcctt gtggcaaaac
      361 ccttaatgca attataccaa acaaactctt taacttcttt aatatagtcc atgaaaagat
      421 tttacttgtt attccttagc actttgtttt ttgcaccttc atttttattt ggtgcaaata
      481 ttaaaaatat aaaataatat agaaattcaa tagaagaaga gaagcttagt taaaagtttg
      541 tttggtgtaa gccaaaggga ttgttctaaa ccctgcaaaa gcaggggata ctcaataagc
      601 cttgacatag caaagcatta agagtataat tattagaaca attttgagca ttaaactcac
      661 ctcccttctg ggtggtaaat taacgctaaa gggtggcagc cctttggcgt tgcacccttt
      721 tataattata ccaaataaac tctttaactt ctttaatata gtccatgaaa agattttact
      781 ttttgttttt tagcactttg ttttttgcac cttcattttt gtttggtgct acaaacatag
      841 ctaatggaaa tctaatctat acttggggtt atggcgatgt gatgaatgaa atcatgcagg
      901 cggttaaagg tataaccact gaaacagatt atatcgttaa tgcagccttg gctatttcat
      961 tattgctttt cagtatcaaa aaagcaatgg atggacaaac aagtcctgtg tttgaatttg
     1021 gaaaaatgtt tatgcttttt gctgtagtgt ggtacatgtt tttaaaagca ccaaatgaca
     1081 ataatcaccg cttcatgatt cacgatgaag tcactagcaa agattatgtc atttctcaaa
     1141 ttcctatagg tataggaaaa agctttgcat tgatgacgca atttgagaag gttatcctag
     1201 aagctatgga aaaacatttt tcaactccac aatctacaaa tttttctaat gcaggtttag
     1261 gtttttcact tcaagtgatg agtactttgc caagcttaaa gctttcggct attgatgcaa
     1321 ctttgcaaaa aaatattgat ttttatttta gaaactgcgt ttcagtaggt atcttgctta
     1381 atcaacaagg tagaaatctt tttcaaaact ctgataattt aatacaagat cttttcacaa
     1441 acataggcaa tggctctcag cttactcctt tgtttgaaaa taacaataat attgaaaaac
     1501 aaagtgttgt gccttgttct gatgcaggtc ctcaaatcgt tgaaatgatt aaaaacgata
     1561 cagatgaagc tatgaagatt catgctgctt tgcttggtat ggcgaatgat atggcaaatt
     1621 atgagcaaaa gttcttaggc gctgcacaaa tctataacga acaagctgta agtgctagat
     1681 cttatttgca acaatccatg ataatgcttg cttctcaaga tgcaatcatt aataccgcta
     1741 aatcagtagg tttaaatcct gcttctgtgg ctgcaaatac tgcttatgcg gatcagcaat
     1801 tttatgcaag tatgcaagca caaggacact tggcacaaac ttatttgcct ttagctaaag
     1861 cttatttaac agctattatc ataggtttgt cttggcttgt tgctttgctt tctattgtgt
     1921 ttggctctta tgctcatatt aagatgtttt ttactctatg tatttggata gtactttgga
     1981 ctcctatact ttgtattatt aattttataa atgattttaa tcttatgaat gttgcacagg
     2041 tgataacagg tggaaaagca gctttaagct taggagataa cattcttata ttcaaagaag
     2101 tagcaaatag atcaaatttc atgaattatc ttgtaatgag tactcctgtt ttagcttatg
     2161 ctatagctaa agcaagtgaa caaggatttg taacttttgc ttctggatta tctcaagctc
     2221 taacaggtgc ttcaagagct gctggaagct ttgcaaatca gcaagcctta tctacacaaa
     2281 ctagcattgc tgctcctaga ggagatgaag tttgggcgat gaatgcaggg gtgatgagct
     2341 tgcaaagtgc tataagtgca gggggtggta gatttagcat gtctagtata acagggggtg
     2401 gaacaacagc tagagatgtg aatacaggta caagttttgc tttgggaaat catggtgaaa
     2461 tttctaatat gaataggact tgatgcaaaa cacgcacaaa gcgaaactca aactagacaa
     2521 gattctcttg ctaattctat tgccgatact cacaaaacag gcactaatca cggtattacc
     2581 tctgattatc ttagaaatca tggtgcagga gtagaagata ctaaagcaat tgagaaagca
     2641 gaaacgaaag ctttaaaaga aactatgaat gaagcattaa gcgataaatc tagcttctct
     2701 gaaacagaca aaaaagcttt agaaggaagt attagcgctt atgctagtgg ctcagcaggg
     2761 attgaaatct ttggaaatgg tggaaaaata ggtggagaaa ttaaagggac agcttcaata
     2821 ggcacaggct caactgaaac acaagaatat tcaagaagcc taagtaaaga agggtaggct
     2881 gcatttgata aaatgtatgc tgaaaaactt ggcaatatca ttaaatctaa tgatagtgtg
     2941 gcttctgctt attctaatgc tctatctaca agcacaggta gtgaatttgc tgatgccaaa
     3001 caaaaagcac attcttatag tgaagcaagt caatacagtg aagctataca ggcaagtaat
     3061 tttacctaat atggctgaaa attacattgc tgaaaataat ttgggtggaa ctagagaaca
     3121 acaagttgct gctgcagcta aagggttaga aaacttagcc gcaaggggag atttgcaagg
     3181 cttgttgcat tatgctaata tgaatacagc taagccaaat gctgatagaa atcatgatgt
     3241 tagcaataaa tcttattaca gtccttcaag tgtaggagct aataatgctc ataataatga
     3301 tgcagtagct aatcaaaata agttaaacag cttaggaaca acaggggggg ggataatata
     3361 agaaatgaat ttaaccaaca aagtggggct gctataagta atttcaaaaa tcaaggaaca
     3421 agtacttcta atgtggtcaa taatagtgct aaagatgcca tagtagaaca agatgctaac
     3481 aggagaatgg gagtaaatcc tagctcttat ataatacaag atgcaagtaa atcaggtaat
     3541 gagcttgcaa aagaagctca aggtttattt gatgctatga gcaaaaaata agtctagctt
     3601 tttagttagg cttagtgatc tcgtatagca ccgaatatat aatcaaattt acgaggatcg
     3661 ctttctatat atcccccaat ttcacttgtt cccccatgct ttttctcatc atagggaact
     3721 atttttatat ttttagcaag gaataacaca aaagcaaaac aatagctgca actccgcaag
     3781 aaagccaaag aacaagtatg agtttttcgg ttgtagtcac ttttgctttt ttcctacatt
     3841 tatccatctt tattcctttc aatatttttt aaataactta ctatgactac ctagttttaa
     3901 aatatttagc tctaactcat tattatgttt ttgataaatt aataacaagt tagactttat
     3961 atgacattct ctaaaatctt ttaatacacc ttttaattga tgatctttat atttaggttc
     4021 taaattctca tcattagaaa gttttacaat aacttcatca gttattttac gctcttcatc
     4081 gcttattttt ttgtaagctt ttataaaatc tttatggtaa taaattttat attttgccat
     4141 tttgataagc tttcacaaag tcttgatgcg aattaaagct taatgcagta ttgacttttt
     4201 tttctttatc aagttctttg cttgcattta atatcttact ttcaaaacta ctcaacttag
     4261 gcttagaaat tttacatttg gcatttatgc tttttgctaa acccttgaat gcaggtaaaa
     4321 aattttcatt aacattttca ataataagag tcataagcaa ctcctttctc aatttatata
     4381 acataattat accatttttt aataattttt gcaagtattt ttgttacaga atgcctattt
     4441 tttaggggtt tgaaacggat tttttttgac ttgattgttt tatttattgc ttaatgaaaa
     4501 ttaatttggg tataattagc aaattaattt ttttagcttc atattgattt gctaatcaaa
     4561 tataaatgtt aaaatagtct atacagtatt taggatatta attgaaagaa taaagagggt
     4621 agtaaaatga aaaccacaga atataatacg caacaaaaaa ataataaaga atatttagct
     4681 gagagagaag cagttaaaaa aaactatggc aaaaatggaa aaagagttag aaaaacctgc
     4741 tataaatgcg gtgtttcaaa gacttaaaaa taaatgaaat atatagaact aagcgaagct
     4801 attgctatac acgaaaagat tattgaaaaa acaggcggat taagtggtta taatgaaaca
     4861 caaagtagga tatttggcta gtgcattaga gtatataaaa aacgatgatt attatcctac
     4921 aataactgat aaaattacac atttaatatt ttcctgtgta aaatttcatc catttgctga
     4981 tggaaataaa cggacttcga tatttctagg tatgcacttt ttagatttag ataagatttt
     5041 accaaagaat atgaattcat aggtagtcct actttagatg atatagtaaa acacaaacaa
     5101 agtgatgaag tttttaaagt gttttataaa aaagatgata aaataagatt gcttagagtt
     5161 agtaatatgc aagctttaaa tcgttttgat aaacttaaag gtgcaatgac aaaaataatt
     5221 ttagatagtg gttttaaacc tgataaataa aaaggattaa tatgtgtaaa gatcaagaat
     5281 atatagagca aagaaaggtt ttatgggaaa aaagttttga agcctttaaa gatgataaag
     5341 tgtatcaaaa agaacagctt gaacttgcag aagcaggaat taatgatggc ttagaggagg
     5401 attaattata taattagcca tatattttat attagttttt ttaaaaaacc gtttttacta
     5461 tattctttaa tcttttgtat tgtattttga ttgtcttatt tatgtaattt tatatataaa
     5521 aaaagttttt tccaatttta caacaaaatc ctttatggta taataaaaat aaaaattata
     5581 taagaaagga tacaaatggc tataaaaatt gaaattagcg gatttgataa ggatttttta
     5641 cctgtttttg agagtttagc taaaagctta tctcaaaagc ctattttatc aatgtttttt
     5701 cttatttttt gagcaaaaac ttacgcatac ccttttttca ttttttgttt ctttaacttc
     5761 tcaaaaaaat ttgtgcctca ttaaaacttg gaaatacatt attttttctt cctgtgcaac
     5821 ttttaaaacg cacatttccg taaactctct caaccatata ttcctcaaat agagtggtaa
     5881 taatttctat gctataatag cgaatgtttc ctttctcagt tattctgtgc aacaaaacat
     5941 tattcataaa aaacctaatt aaaaattatt tattttattc aaaaaatcat ttttaaacat
     6001 tttttctata gcaagcttaa tcatttgatt aattttctca ttttctttag ctacattaga
     6061 aatttcatct ttgtaagcag gaatcatcat ttctatcatt tttaatgttt tttcatcaaa
     6121 taatactctt tttggaatta at
//
LOCUS       DAPIWU010000097         6126 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.097, whole genome shotgun sequence.
ACCESSION   DAPIWU010000097 DAPIWU010000000
VERSION     DAPIWU010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6126
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.097"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            74..982
                     /locus_tag="RJ285_001491"
     CDS             74..982
                     /locus_tag="RJ285_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HDV7384234.1"
                     /translation="MGILKGTLPALLTPYKDDGSINEKEFIRYCEFGISKGLNGLFCN
                     GSAGDSQALSVEEQVKLMKLTKKATKNNIPIITGITSTIYENTFILAQKAYELGLDAL
                     LLAMPYYYKLSEDALFEYVKYLASEVKLPLYVYNIPLFAPALSLKFIEKVSKLDNVVG
                     IKDSSGDALLLNHILDVVPSNFDVFVGREEFYVGALLAGAKGSMTSIGGVFPELMSEI
                     YKSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPAT
                     KEELNTRFDEAKELIKTIEKETGIKL"
     gene            979..1242
                     /locus_tag="RJ285_001492"
     CDS             979..1242
                     /locus_tag="RJ285_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDV7384235.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            1245..2411
                     /locus_tag="RJ285_001493"
     CDS             1245..2411
                     /locus_tag="RJ285_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDV7384236.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIIGLGCEVIQAKAVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIENGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPALGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILAY
                     ENLVKSFHADIRGANPSPGNMAGGLSTIEEKSLGCVYKAGTKTLMDVIDYAKPVVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAELNEQNDFSVWRLATTC"
     gene            2423..3709
                     /locus_tag="RJ285_001494"
     CDS             2423..3709
                     /locus_tag="RJ285_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7384237.1"
                     /translation="MKHANSIKLELVCKKISWRILPLIVLMFCLSMLDRTNISFVKSH
                     IEIDAGIGEAAYALGAGIFFIGYAIFEVPSNLFLHKLGAKIWLSRIMITWGLVTMAMI
                     FIQGEISFYVLRFLLGLTEAGFSPGIILYLSYFFPAIYRSKAYGIYQMGVPIAFVFGS
                     LISGFILDYTPNIYFKNWQWMFLIEGGITVLVGIFCLFYLDSHPKDAKWLDIKEKDIL
                     LKHIEISNTKAKDYSIKDIFKSILVWKFVFVYFCIQLSVYGVLFYLPSKIAQILQINV
                     GFEVGLLNAIPWIFVFIALPIFTSLADKKHSWNLHAILFLLLASLSMIASTFVTNLAA
                     FLFFISLAAIGFIVIQPIFWNLPTQVLKGKGAAAAIALIGSLGNLGGFVAPTLKTYIE
                     NHFGVEFGLIVLALIAILGVLVLIHLKITLNLDKGE"
     gene            3710..4497
                     /locus_tag="RJ285_001495"
                     /pseudo
     CDS             3710..4497
                     /locus_tag="RJ285_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343919.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            4508..5764
                     /gene="fucP"
                     /locus_tag="RJ285_001496"
     CDS             4508..5764
                     /gene="fucP"
                     /locus_tag="RJ285_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HDV7384238.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHL
                     FLFAFFILACGIGSLETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASKEQIEAALVANMGNVQLVYIGIAVIVILILIAFVANKLPEGSAVSDD
                     YKQKDDSKPIYVFKHRHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYY
                     FSIALVAFMLGRIVSTPLMKIIKGEKILGFYSLINVLICLSLYFVSGFFSIVLLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGTGYL
                     AIAPLFLYVAWYGFIGSKVRKNAKDF"
     gene            5748..>6126
                     /locus_tag="RJ285_001497"
     CDS             5748..>6126
                     /locus_tag="RJ285_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7384239.1"
                     /translation="MQKIFDAHLHLWDLGKIPISWMKDDEKLEQNYDFFRMKQEYKEF
                     EFIGAMYVEVNSDDLEKEILFALEQKKLHNLLLCLADLKHKEKLNSFREVMHVSKKGA
                     KRLFEVDFEEKIEILKTFNIPFEA"
BASE COUNT         2053 a          734 c         1213 g         2126 t
ORIGIN      
        1 cttgattttt ttacaaatat tttgttatat tttttgtata taaatatatt tttgtatata
       61 cgaaatgaaa aaaatgggaa ttttaaaagg aactttaccg gctttactta ctccatataa
      121 agatgatgga agtatcaatg aaaaagaatt tattcgctat tgtgaatttg gtatttctaa
      181 aggcttgaac ggattgtttt gtaatggaag tgcaggggat tctcaagctt tgagcgtgga
      241 agagcaagtt aagttaatga aactcaccaa aaaggctaca aaaaataata tacctatcat
      301 cacgggtatt acctcgacaa tttatgaaaa cacttttatt ttggcgcaaa aagcttatga
      361 attaggtctt gatgccttat tacttgctat gccttattat tataaattga gtgaagatgc
      421 actttttgaa tatgtaaaat atttagcttc tgaagtgaaa cttcccttat atgtttataa
      481 tatacctctt tttgcaccag cactaagctt aaaatttata gaaaaggttt caaagcttga
      541 taatgttgtg ggtataaaag atagtagcgg agatgctttg cttttaaatc atattttaga
      601 tgtagtacct agtaattttg atgtttttgt aggaagagaa gaattttatg taggtgcatt
      661 attagcaggt gcaaaaggtt ctatgactag cataggtgga gtttttccag aacttatgag
      721 cgaaatttac aaatcaatca atgaaaaaaa tataggcaga gctttgctaa tacaaaaaag
      781 tttattaaag gccataagat ttggtatgag catagctttt cctatgggtt ttgctttgct
      841 tttaaaggcc agaggatttg aatttgtaaa tgctagtatt catcctttat cacctgctac
      901 aaaagaagaa ttaaacactc gctttgatga agcaaaagag cttattaaaa ctatagaaaa
      961 agaaacaggt ataaaactat gaaaggatat attatagtca atgaaaaaga caatgttgcc
     1021 acagctttgc gtgactttaa aaaaggcgaa aaagtggcaa atattgagct tttaaatgat
     1081 attgcaagcg gacataaatt tgcactaaag gatataaaaa aagatgaaat tattatcaaa
     1141 tacgcagaag ctatagctag tgcaagttgc gatattagta caggggaatg ggtgcatatc
     1201 cataatactg cgggaattag aggtcgtgga gataaggaat gaaaatgaaa aagataatgg
     1261 gttatagaag ggaagatgga aaatttggct taagaaataa agtcattatc ataccaagtg
     1321 tacattgtgc taataaagtg tgtgaaaata tagctagaaa atgtaatgga gcagtttata
     1381 tcaaccatca gcatggttgc tcccagcttg aatttgatgc tttacaaact agagatgttt
     1441 taataggtca tgggagcaat gccaatgttt ttggtgtttt aattataggg cttggttgtg
     1501 aggtaataca agccaaagca gtagcagaaa aaatcaaaga agcaacgcct tataaaaagg
     1561 ttgaatattt agtgatacaa gaatgtggtg gtagtaaaaa taccattgaa aatggtatca
     1621 aaatagtcaa tgaaatgctt gaaagtgctg caaaattaca aaaaagtgaa ggagatttca
     1681 gtgatttgat tttaggcaca gaatgcggtg gaagtgatag ctatagcgga cttagtgcta
     1741 atcctgcttt aggaagtttg agtgattttg taatcgatga gggtggtgcg gtaattttag
     1801 cagaaactac agaacttata ggttgtgaag ccatactagc taagagagca aaaaacgatg
     1861 aaatagctaa aaaggtatat gataagattt tagcttatga gaatttagtc aaatcttttc
     1921 atgctgatat tcgaggagca aatcctagcc caggaaatat ggcaggcggg cttagtacta
     1981 tagaggaaaa atctttaggc tgtgtttata aggcaggaac taaaacctta atggatgtga
     2041 ttgattatgc taagcctgta gtttctaaag gtttaacttt tatgaataca ccaggcaatg
     2101 atatagaaca acttagtgct atggttgcag gtggagcaaa tatttgtgtt tttactacag
     2161 gtcgtggcac tccaacgggt tctgctatcg tgcctactat caaaatgagt tctaatactt
     2221 tttgttatga aaatatgaat gatgctattg atattaacgc aggaagcatt atagatgggg
     2281 taaaaacaaa agaagaagtg cgtgatgagc ttatagaatt aatcgtgcga atttcagatg
     2341 gagaattggt aaaagccgag cttaacgagc aaaatgattt ttcagtttgg agacttgcta
     2401 caacttgtta aagggtaaag tgatgaaaca tgcaaattca ataaagttag agttagtatg
     2461 taaaaaaata tcttggcgta ttttgccttt gattgttttg atgttttgtc tttctatgct
     2521 tgataggaca aatattagct ttgtgaaatc tcatatagaa attgatgcag gcatcggtga
     2581 ggctgcttat gctttgggtg ctggaatatt ttttataggt tatgccattt ttgaagtgcc
     2641 ttcaaattta tttttgcata aattaggagc aaaaatttgg ttaagtcgca taatgatcac
     2701 ttggggactt gtaactatgg caatgatttt tatacaagga gaaataagtt tttatgtatt
     2761 aagattttta ttgggtttaa ctgaagcagg ttttagtcca ggcattattt tataccttag
     2821 ttattttttc ccagctatat atcgatcaaa agcttatgga atttatcaaa tgggagttcc
     2881 aattgctttt gtttttggtt ctttaattag cggttttata cttgattata caccaaatat
     2941 atattttaaa aattggcaat ggatgttttt aatagaagga ggtattaccg ttttagtagg
     3001 tattttttgt ttattttatc ttgattcaca tccaaaagat gcaaaatggt tagatataaa
     3061 agaaaaagat attttgctaa aacatattga aatttccaat actaaagcta aggattattc
     3121 tataaaagat atttttaaaa gtattttggt gtggaaattt gtatttgttt atttttgtat
     3181 tcaattaagt gtttatggag tgctttttta tttaccaagt aaaattgccc aaatattgca
     3241 aataaatgta ggttttgaag ttggactttt aaatgccata ccttggattt ttgtttttat
     3301 cgccttgcca atatttacct cattggctga taaaaaacat tcttggaatt tacatgcgat
     3361 tttattttta ctgctagcaa gtttgagcat gatagcttca acttttgtta caaatttggc
     3421 ggcattttta ttttttatta gcttggctgc tataggtttt atagtcattc agcctatatt
     3481 ttggaatttg ccaactcaag ttttaaaagg aaaaggagcc gcggctgcta ttgctcttat
     3541 aggatccttg ggaaatttag gaggttttgt agctcctact ttaaaaacat atatagaaaa
     3601 tcattttgga gttgagtttg gacttatagt gttagcattg atagcaattt taggtgtatt
     3661 ggtattaata catttaaaaa taactttaaa tttagataaa ggagaataaa tggatttaaa
     3721 aattaaaaat aaggtttgta ttattacagg aggggctaaa ggtattgggt atggtattgc
     3781 taaattatgg gcaagcgaag gcggaattcc tgtaattttt tcaagatcta tgcctaaaga
     3841 gcacgataaa gaattaaaaa aattatctag tgagtatgaa ttttatgaaa ttgatttaaa
     3901 aaattatgag caaattgaaa agcttgtaaa aaaagttgct atcaaacatg gtggaatcta
     3961 tgctcttgta aataatgcag gtacaaatga taatttacat attgaaaata caagtactca
     4021 agatttgata aaatcttatg aaaataatct ttttcattat tatactatga ccaaagaatg
     4081 tttgccttac attaaaaaag aacaaggcag tattttaaat atagtgagta aaacaggcat
     4141 cacaggacaa ggaagaactt cagcttatgc ttcggccaaa gcggctcaaa tgggttttac
     4201 tagagaatgg gcttgtgctt ttgctaagga taatgttagg gtaaatgcta tagctcctgc
     4261 tgaagttatg actcctcttt atgaaaaatg gctgcaaaat tttcctaatc ctaaagagca
     4321 atatgaaaaa atcgcaaaag ctataccttt aggccatcgt ttactaccat agaggaaatt
     4381 gcaaatacag cggtttttac acttagtccc cttgcttcac atactacagg gcaaatttta
     4441 atgccagatg gaggttatgt gcatttagat agagcattaa attgggatga aaactaagga
     4501 gtaaaaaatg actgattcta aaaatataaa aatagctatt gttttggtaa cttctctttt
     4561 ctttttatgg ggagtaagct atggacttat tgatgtgatg aataaaaatt ttcaaaatca
     4621 tcttcatatt agccagcatg aaagtggttt tttacagttt gcttattttg gtgcttattt
     4681 tatcatagcc ttacccgcag gttatatagc caatagattt tcttataaaa tgggaatcat
     4741 ttttggctta gctctttatg ccataggagc tttgcttatt atacctgcta caaatttggc
     4801 ttcttttcat ttgtttttgt ttgcgttttt tattttagct tgtggtattg gttctttaga
     4861 aactagtgca aatccctaca tgacaaagct tggtgatgaa aaaaatgcga gttttagaat
     4921 caatgctgcg caaagtttta atggtttggg gcaatttgta ggacctatta taggcggagc
     4981 tttattttta tctattacta aacaagaaga gggtgcgagt aaagagcaaa tcgaggctgc
     5041 attggtagct aatatgggaa atgtccagct tgtttatata ggaattgctg tcattgttat
     5101 tttgatttta attgcttttg ttgcaaataa gcttccagaa ggaagtgcgg taagtgatga
     5161 ttataagcaa aaagatgatt ctaagcccat atatgttttt aaacacagac attttaactt
     5221 agggctttta gcacagtttt tgtatatagc caatcaagtt gcagcaggag ctttttttat
     5281 caattatgtt gtggaacata atgaaggttt aaaagatgcg caaggtgctt attatttttc
     5341 tatagctttg gttgcattta tgttaggacg cattgtttct actcctttga tgaagataat
     5401 caaaggtgaa aaaattttag gattttattc tctaatcaat gtgcttatat gtcttagttt
     5461 atattttgtt agcgggtttt ttagcatagt gcttttaata gctttatttt tctttatgtc
     5521 tatttctttt cctactattt ttgcggtagc aacaaaaaat ttacctttaa atcaagtaaa
     5581 actaggcgga tctttgcttg tgatgagtat agtaggtgga gcgattatgc ctataattat
     5641 aggctttatt aatgatcatt atggtacagg cactgggtat ttagcaatcg cacctttgtt
     5701 tttatatgtg gcttggtatg gctttatagg ttcaaaagtg agaaaaaatg caaaagattt
     5761 ttgatgctca tctgcacctt tgggatttgg gaaaaatacc tatttcatgg atgaaagacg
     5821 atgaaaaatt agagcaaaat tatgattttt ttaggatgaa acaagaatat aaagaatttg
     5881 aatttatagg tgctatgtat gttgaggtta atagtgatga tttggaaaag gaaatcttgt
     5941 ttgctttgga acaaaaaaag cttcataatc ttttgctttg tctagcagat ttaaaacata
     6001 aagaaaaact taattctttt agagaagtaa tgcatgtaag caaaaaagga gctaaaagat
     6061 tgtttgaagt agattttgaa gaaaaaatag aaattttaaa aacttttaat ataccttttg
     6121 aagctt
//
LOCUS       DAPIWU010000098         6119 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.098, whole genome shotgun sequence.
ACCESSION   DAPIWU010000098 DAPIWU010000000
VERSION     DAPIWU010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6119
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.098"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..734)
                     /locus_tag="RJ285_001498"
     CDS             complement(<1..734)
                     /locus_tag="RJ285_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7384240.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNCKKYKDFKKPP"
     gene            complement(736..1422)
                     /locus_tag="RJ285_001499"
     CDS             complement(736..1422)
                     /locus_tag="RJ285_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7384241.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKIKRFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            1501..2310
                     /locus_tag="RJ285_001500"
     CDS             1501..2310
                     /locus_tag="RJ285_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDV7384242.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKDFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            2452..3219
                     /locus_tag="RJ285_001501"
     CDS             2452..3219
                     /locus_tag="RJ285_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HDV7384243.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHCKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            3229..3969
                     /gene="pxpB"
                     /locus_tag="RJ285_001502"
     CDS             3229..3969
                     /gene="pxpB"
                     /locus_tag="RJ285_001502"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDV7384244.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSTYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLTEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            3950..4915
                     /locus_tag="RJ285_001503"
     CDS             3950..4915
                     /locus_tag="RJ285_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDV7384245.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(4912..5805)
                     /locus_tag="RJ285_001504"
     CDS             complement(4912..5805)
                     /locus_tag="RJ285_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDV7384246.1"
                     /translation="MKESYLFILLFIAMFLWGSSWPTSKILANYTDTSIITFWRFFFV
                     VSGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTTM
                     IPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFNI
                     LFLTCSFIWALIAVFNHKAKGAHPLAINFYINLISVLMFSWVLFDVKSYEIFHFEFKF
                     WISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNALT
                     LLGCALAIGAIYFINIYGKKA"
     gene            complement(5823..>6119)
                     /locus_tag="RJ285_001505"
     CDS             complement(5823..>6119)
                     /locus_tag="RJ285_001505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384247.1"
                     /translation="PISFIPAFIFLLVLLNPYIIRISKIGNYNQSFALYNKTEVKELL
                     NSKHIPIFKENNATLFVKDLYIVSNLGEKYLIKNDQNETFTLNKQDIFSLLDKI"
BASE COUNT         2310 a          849 c          991 g         1969 t
ORIGIN      
        1 ggaggttttt taaaatcttt atatttttta caattactaa aatctataaa attacaaaat
       61 ttcacacctt gattttctag ttcaaaaaca ttagtatttt caaattctaa aatttctcca
      121 ctgtgtaaat aaagcttttt ttgcgccaaa gaatctaaaa aatgtttatc atgacttgcg
      181 attaaaaaac ctgtattgaa attttcatgc attttaagaa tagctttttt aaataaaagt
      241 gtagtatttt tatccaaaaa agcacttggt tcatcaagta aataatactt cgctcttacg
      301 cttaaagcta tagcaaaagc tattttttga ctttgtcctg atgaaagttc attaggatgt
      361 ttacttaaaa gactttcatc taaatttaaa aacatcaaac tttcttttat gcgttcttca
      421 atatcttctt taatcccata agtttttaag gtaaataaaa aatttgccct tacactacga
      481 tttaacaaaa taggctctgg aaaaagcaaa taaatttcac gcttttgttt attattaggt
      541 ttaaaatttc caaaataaga aatatttttt gaaaaatctc cttctaaaaa ttttaatatt
      601 cttaaaaatg tagattttcc acttccattc gctcccatta agatgctaat tttacttgta
      661 tcaagtttta aatttttgat ttttaaaact tctttgtttt gatagttgaa aaaaagatta
      721 gaaatttcta tcattttatg ttcttttgag tttgtgcgtg atgaaattta aacaaaaggc
      781 aatgagaatt aaaaccaaag ccaaagctat accgctagca aattcgcctt tgtttgtttc
      841 aagagaaata gctgtggtta tggttctagt atcgtatttg atatttccac ctactatcat
      901 cgctactcct acttctgcta caatgcgtcc ataagctagt gcaacgacgc taatcaaagc
      961 aaagcgtaat tcataaatca tcgttaaaac aagttttaaa ggacttaggt gaaaagattt
     1021 tataagtaaa aaatgttttt tattcatatt ttctatcaaa tttgaaaaaa gtgcgatcac
     1081 tataggaagc gctaagataa actgccctaa aattaaagcc tttatagtaa aaagtagtcc
     1141 aaattctccc aaaggtcctc gacttgaaat cagcgcataa agtataagtc ctactgcaac
     1201 tgttggaaaa gagaggctag tatctatgat aagttttata aagcgtttga ttttaaaatc
     1261 aaaaaagcct aagataaatc ccaaaggaaa acctataagc aaagctaaaa ctatagaaat
     1321 acttgagctt aaaagtgtag tttttatagc tgaaattacg ctttcatcag cattgaaaag
     1381 taaaaataaa gcctgtttaa aaccatcaaa aatataatcc aaaaatatcc tttttaaaat
     1441 aagtaatttt agcataatta tgctaaaata tttttttatg taaatttata aggaaaaaaa
     1501 atgaaaaaaa tcatttcttt agcccttgct ttagctttaa gtgcaagtgc agcagaactt
     1561 aaaatggcaa ctacaacaag cactgacaat acaggacttt tagatgctct aaaacctctt
     1621 tatgaaaaag aaagtggcaa taccttaaaa tgggttgccg taggaacagg tgcggcttta
     1681 aaaatgggtg aagattgcaa tgctgatgtg ctttttgtgc attctccaaa ggctgaaaaa
     1741 gaatttatga aaaaagactt tggcgtagat agaactcctg tgatgtataa tgattttatc
     1801 atcatcgcag ataaatcttt agcttctaaa tttaaaggta aaaatttaaa agaaagctta
     1861 gaacttatca aaaatgaaaa gcttactttc atctcaagag gtgataaatc aggcactgac
     1921 aataaagaaa aaagcctttg gaaaaatctt ggtggtgttc ctgaaaagca aagctggtat
     1981 caacaaagcg gacaaggtat gttagcaagc attaaaatcg ctgaagaaaa aaaaggtgtg
     2041 attttaaccg atcgtggtac ttatatcaaa tatgaagcca atgaaaaagg caaaccaaac
     2101 ttagttattg taaatgaagg cgatgatagt cttaaaaatt tttattctgt tatagcgaca
     2161 aatcctaagc attgtaaaaa tgtaaattat acagaagcta gtaaatttat caaatgggta
     2221 acaagtgata agactttaaa tttcattgct gattttaaac ttcttaataa acctttattt
     2281 gtaattgatg caaaaacaag aaaagactaa aaattaagca ggttttaacc tgcttaaaat
     2341 atcatttttt acttattgta acttttttat ttatttttca aaacttttag tttatttaaa
     2401 attcttcttt agatataata aaatcaataa ttaaatatac aaggtcaaat aatgttcaaa
     2461 gtggatttaa atagtgattt aggggaaagt tttggcgcct ataaaatggg aatggatgaa
     2521 gaaattttaa aatttgtaag ttcagtaaat gtcgcttgtg gctttcatgc gggtgatcct
     2581 tgcgtgatgg atgaaacctt aaatttagcc aagcaaaatg gtgtttgcat aggagcacat
     2641 ccatcttatc ctgatctttt gggttttgga agacgcaata tgcaaataag ctttgaagag
     2701 gctaaaaact atgccttgta tcaactagga gctttatttg gctttgctaa ggcaaaaggt
     2761 atgaaaatac agcattgtaa agcccatggg gcgctttata atatggcagc tattgatgaa
     2821 aatttagcct tagcactttg tgaggcagtg gcgagttttg atgaaaatat tatttttcta
     2881 gggcttagta attctgctat gaatgaagca gctaagaaaa agggtttaag atatgctaat
     2941 gaagtttttg cggatcgtgc ctataatgat gatggcactt tagtttcaag aaaattagaa
     3001 ggggcgttaa tacacgatga aaatttagct atcaaacgcg tgataaaaat gataaaagaa
     3061 agcaaagtta caagcataaa tggcaaagaa attgatttaa aagccgatag tatttgtgtt
     3121 catggggata atgcaaaagc tttagaattt gttaaaaaaa tcaaagaaaa tttaaaaaaa
     3181 gagcaaattc aaatttgtgc tttggaaaat tttatataag ttttagcaat gtttagtgtg
     3241 cattttagtg gaagtaaagc tttgcttttg cgttttgagc aagaaatttc acctcaaatc
     3301 aatgcctatg ttttaagcac agaacaaagg atacaaaaag ccctaaaaga aggtgaaatt
     3361 tatggtattg atgagttggt aagtacttat gcaagtttgt tgatatactt taatccttgc
     3421 gtgctttctt taaattcttt gcttgatttt ttggaaaaaa ttaaaaagga tatcaaactt
     3481 acggagcaaa actcaagtct ttgtatagaa gttccacttt gttatgatga agaatttggg
     3541 ctggatttag aatttgtgtg caaacacaat caaatttcaa aagaagagct tatatctctt
     3601 cacactaaac cttattatct tgtttttatg ctaggtttta tggcaggttt tccttatctt
     3661 ggaggtttag atgaaagact ttttacccca cgcctttcaa gccctagagc aaaaatagaa
     3721 gctggaagcg taggcatagc cgataaacaa acaggagttt atcctatatc aagcccaggg
     3781 ggttggcaaa tcattgctag aacacctttg gaattttttg ataaagaaga tgaaaaaaat
     3841 cccactcttt taaaagcggg tatgttttta aaatttaaag ccatttcaaa agatgaattt
     3901 ttcgatatcc aagagcaagt tgctaaaaaa gtctatcaaa aggaaattta tgagtataaa
     3961 aatcattgaa gcgtctataa attcaagttt gcaagacttt ggtagaaaaa aatttgctaa
     4021 atttggcata gcaagaagtg gagctatgga tgaagatgct ttaagaatgg caaatatctt
     4081 gcttggaaac aaacaagatg aagcaggaat tgagctttgt ttaaagggtg gaaaatacga
     4141 atttttagat gagaattatt ttgttttaag tggagctgaa tttgaggcaa agcttgataa
     4201 tcaaaaaatc aaaacttgca aagtatatca agcaaataaa ggcgatattt tagaacttga
     4261 tttagcaaaa ataggttttc gtgggtattt atgcgtagcg ggtggctttg aagtaaaaag
     4321 ttttttaaac tctaaatcca gtgatgctaa aatgggagct ggagtttttg aaggaagagc
     4381 tttgcaaaaa gatgatattt taaatactca taatactttt atacctttta atttagaagc
     4441 tagagaatgt gaaaaccctc tttttaaaag ccctaaagag cctattatac gcgttatttt
     4501 aggaacaaat gaagatgctt ttacccaaaa aggcatagaa acctttttaa atactactta
     4561 taaagtaggt ttaaaaagcg atagaatggc aatttatgca gaatctagtg aaagtataga
     4621 gcataaaaac tcagcagata tcatctcaga tcctgcagtt tttggaagca tacaagtgcc
     4681 aaaaagtggt attcctatca ttttaatggc aggaagacaa agcacaggag gctatacaaa
     4741 aatagccacg gttatagaaa atgatctaag cttactcgca caagctaagt taggttctag
     4801 ctttaaattt caaagcatta gcatgcaaga agccttagaa ctttataaac aaagagaaat
     4861 gaaatttaaa gctatggatc aaaaaatcaa tcttgatttt gaaaatttaa tctaagcttt
     4921 tttaccataa atattgataa aatatatagc acctatagcc aaggcacaac ctaacaaggt
     4981 aagtgcattt ggcacctcgt ctagtataaa ataactgcaa attaaagcac tagcaggagt
     5041 gattaaaaca aaagaatttg ccttaacgct tcctaaaatg tgaatcccat aataataaat
     5101 actagttcct ataatagttg ataaaaaagc cacgacaaac atactgatcc aaaatttaaa
     5161 ttcaaaatga aaaatttcat aactttttac atcaaacaat acccaagaaa acattaaaac
     5221 agaaatgaga ttaatataaa agttaatcgc caaagggtga gctcctttgg ctttatgatt
     5281 aaacactgct atcaaagccc aaataaaaga acaagttaaa aataaaatat taaatttacc
     5341 aaataaatct tctaaactcc ctaaatttag caaacaaaat ccagataata aacctaaaaa
     5401 taagcctaga atttcactct ttgtgatctt gtgagttgat tttttgtttt tttgaaaaaa
     5461 tatcgctatc ataaatatca aataagaaaa aataggaatc atagtggtta ctaaaactcc
     5521 tcctttgcct gccaagccgt gctttatagc gataaaaaat acaaaggcat aaagcccatt
     5581 taaaactcct gctatcaata cccattttaa ggcagttttt tcgattttaa gaggaatttt
     5641 taagaagttt aaaacaaaaa atgaacccga tacaacaaag aaaaaacgcc aaaaggtaat
     5701 aatagaagta tccgtataat ttgctaaaat cttagatgtt ggccaagatg agccccataa
     5761 aaacattgcg ataaaaagca agatgaacaa ataactctct ttcatttttt ccttaacttt
     5821 tattaaattt tatctaaaag actgaaaata tcttgtttat ttagggtaaa agtttcattt
     5881 tgatcgtttt taatcaaata cttttctcca agatttgaaa ctatgtataa atcttttaca
     5941 aataaagttg cattgttttc tttaaaaatg ggaatatgct tggaatttaa taattcttta
     6001 acttcggttt tattataaag tgcgaaactt tggttgtaat tgcctatttt acttattcta
     6061 ataatataag gatttaaaag cacaagtaaa aaaataaaag ctggtataaa agatatggg
//
LOCUS       DAPIWU010000099         6027 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.100, whole genome shotgun sequence.
ACCESSION   DAPIWU010000099 DAPIWU010000000
VERSION     DAPIWU010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6027
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.100"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            343..2337
                     /locus_tag="RJ285_001506"
     CDS             343..2337
                     /locus_tag="RJ285_001506"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384248.1"
                     /translation="MEALNQKNSLNIRLLSSNNILLHNQEFKLYEIAQGNKNEIKTIF
                     TTNRMGEAHLNASEIFSKEAQSFELILNQSSVYKNKPIYNHRFLLRSYEYGHWCEIKF
                     ERKADKGSINSIRLKSKEFTLENNEKIVRNFYTFGDIVEFEAIYEDAKIKEEQIKWGY
                     VFIQDKNTLDKLNKNQLTNDKKESSLFDEEILKDCFYIEKEEDKALLSSSIIYRHLEN
                     NKAYCGKHLSLQLPNPKDTQEQKTLLVFAYKEIPNYNASYLIRINDYPQITIDCTLAE
                     TLRAHTNKDEISRLGWGGVSYICQRLWHDNPSDAKELKDLTFRSSTSQDFIDTIPNET
                     MKTIVKEILPRVEMQQLKTDNTKSRDKARFYAELDWDSFYMKFPIMQELKGEYMNLKK
                     LFGEESDFQKQFEDFLNDTLLDIKNIKNTQEYTMALNIQAMKENKTKNAEVFKLYKKE
                     ETLPETHKAIKDLQKPSDIIDNSLYFQRFDIKNDVFLPHLDLSKFDAFSLQNSIQHEK
                     EVLDKFHSNPKYKQNFALYSIAGAFNILYIPSLIQITRVTRFYNYHSLYAACKKVRAF
                     IIDTVNFNNNGSDQPIGAWDYEKVGFDLYNSIMQYRNTKFHFKYTSPKSFLFPLYNSD
                     FLKTKQYFNLGLDFFLYSSTFLDMDFSHTQMQDTAFIVGK"
     gene            2339..2950
                     /locus_tag="RJ285_001507"
     CDS             2339..2950
                     /locus_tag="RJ285_001507"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384249.1"
                     /translation="MFFAGGDYEPFIYGLSLIAYYFLPLYCLTLLLYKYKPQYVNLTL
                     HIGASVLLYLAMWVIFVDTTIISLFEIFQMFLIPIILQIIHLTFILYAIIYTYFDMQK
                     ISFTKRLGRYIVSFFIGIGLLILSFVMMYAIGYYISSWCDRYYLKIDERNEAIRTITF
                     YVLVVVFPSIIALLLSYILYKNHKSFFTKILYRILSMIGKDKP"
     gene            3131..3574
                     /locus_tag="RJ285_001508"
     CDS             3131..3574
                     /locus_tag="RJ285_001508"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384250.1"
                     /translation="MTDGFGFLAYVFTLPVLILGGISYVCIVFLIRFQSFCGFVCSKS
                     FWIAWLFSYYLLFLIICITCEWELLIMYICGISLPLVYFLRKFFMQSHSNLALNEFSL
                     WIIPMSIFSLCIHSSLCVAIAWMLIFFQTNYDTQTLQSWLRFLFI"
     gene            3659..3909
                     /locus_tag="RJ285_001509"
                     /pseudo
     CDS             3659..3909
                     /locus_tag="RJ285_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910301.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3959..4966
                     /locus_tag="RJ285_001510"
                     /pseudo
     CDS             3959..4966
                     /locus_tag="RJ285_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902830.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
     gene            5461..5781
                     /locus_tag="RJ285_001511"
     CDS             5461..5781
                     /locus_tag="RJ285_001511"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384251.1"
                     /translation="MHKIGNVAIVSLSSADKKGGSYTFTNKVSMQDFGENLYLDTEAN
                     GYEKQIKNSRENLYITNLKAYKEKEQQNTTDKIPYNETIFIRAYLNNEENFSSMRQLN
                     GHIV"
BASE COUNT         2324 a          825 c          907 g         1971 t
ORIGIN      
        1 aaaataaatt attaatagaa aagtctttaa cccaaacaat agaaaaagaa tttttcctta
       61 atattcatca aaatttatcc gcccacatac aagataatac atccttaaag tccaattcca
      121 tgcagacaaa ggtagaggaa caatattctt tagaatcaga taattcaact tttgactttc
      181 aaacagattg tgaagtaaaa caggcagtca aatcctccat caagtaggtg atactcaaat
      241 tgttactaag ggagattgtg ttataattaa agcaggtgga gttgaagtaa ttatagattc
      301 taatgggctt gtagttagag gtggagagct taggacagag taatggaagc acttaatcaa
      361 aaaaatagtt taaatattag gcttttaagt tctaataata ttcttctgca taatcaagaa
      421 tttaagcttt atgaaatagc acagggcaat aaaaatgaaa tcaagactat ttttacaacc
      481 aatagaatgg gggaagctca tttaaatgct agtgaaattt ttagtaaaga agcacaaagc
      541 tttgaattaa ttttaaacca atctagtgtt tataaaaaca aacccatcta taatcataga
      601 tttttattaa gaagttatga gtatgggcat tggtgtgaaa taaaatttga aagaaaggca
      661 gataaaggct ctataaactc tattaggcta aaatccaaag aatttacctt agaaaataat
      721 gaaaaaatag tgcgtaattt ctatactttt ggtgatatag tagaatttga agctatttat
      781 gaggatgcaa aaatcaaaga agagcaaatt aaatggggtt atgtttttat tcaggataaa
      841 aacaccttag ataagttaaa caaaaaccaa ttaactaatg acaaaaagga aagttcttta
      901 tttgatgaag aaattttaaa agattgtttt tatattgaaa aagaagaaga taaagcccta
      961 ttatcttctt ctatcattta tagacattta gaaaacaaca aagcttattg tggaaaacat
     1021 cttagtttgc aactaccaaa ccctaaagac acacaagagc aaaaaacact attagtcttt
     1081 gcttataaag aaatacccaa ttataatgcc tcttatctta taagaattaa tgattatcca
     1141 caaattacca ttgattgcac tctagcagaa acactaaggg cacatacaaa caaagatgaa
     1201 atctcaaggc ttggttgggg gggggtaagc tatatctgtc aaagattatg gcatgataat
     1261 ccaagtgatg ctaaagaatt aaaagattta acctttagaa gctctacttc acaagatttt
     1321 atagatacta tccctaatga aacaatgaaa acaatagtaa aggagatatt gcctagagta
     1381 gagatgcaac aattaaagac tgacaacaca aaatcaagag ataaagcaag attttatgcg
     1441 gaattagatt gggatagttt ttatatgaag tttcctataa tgcaagagct aaagggcgag
     1501 tatatgaatc tcaaaaagct ttttggagaa gaatctgatt ttcaaaaaca attcgaagat
     1561 tttcttaatg atactttact agatataaaa aacattaaaa atacacaaga atatacaatg
     1621 gcactcaata tccaagcaat gaaagagaat aagacgaaga atgcagaagt ctttaagcta
     1681 tataaaaaag aggaaacact cccagaaact cataaagcta taaaagactt acaaaaacca
     1741 tcagatatta tcgataatag tttatatttt caaaggtttg atataaaaaa tgatgtgttt
     1801 ttaccgcatt tagacttaag taaatttgat gcattttcat tgcaaaactc catacaacat
     1861 gaaaaagaag ttttagataa attccactct aacccaaaat acaagcagaa ttttgctcta
     1921 tactctatcg caggggcttt taatatctta tatataccaa gccttataca aatcacgaga
     1981 gttacaagat tctataatta ccattcttta tatgctgcgt gcaaaaaggt gcgtgctttt
     2041 atcattgata ctgtgaattt taataataat ggtagcgatc agcctattgg ggcatgggat
     2101 tatgagaagg taggatttga tttatataat tcgataatgc aataccgaaa tacaaaattt
     2161 cattttaaat atacctcacc aaaatcattc ttatttccct tatataattc agactttcta
     2221 aaaacaaaac agtattttaa tctaggctta gatttctttt tatacagctc tacatttttg
     2281 gatatggatt ttagtcatac gcaaatgcaa gatactgctt ttatagtggg gaagtaagat
     2341 gttttttgct ggtggtgatt atgagccttt tatatatggg cttagtctta ttgcatacta
     2401 ttttctaccc ctttattgtc tgacgctttt attgtataaa tataagcctc aatatgtgaa
     2461 tcttactcta catattggag cttcagtgtt gttatactta gctatgtggg taatatttgt
     2521 cgatacaact attatcagcc tttttgaaat ttttcaaatg tttttaatcc ccattatctt
     2581 gcaaattata catcttacct ttatactcta tgctattatc tatacttatt ttgatatgca
     2641 aaagatttca tttacaaaga gactaggcag atatatcgtt tcatttttta ttgggattgg
     2701 actacttatc ctttcttttg taatgatgta tgctattgga tattatatca gctcatggtg
     2761 tgatagatat tatcttaaaa tcgatgagag aaatgaggcg attcgcacta taacttttta
     2821 tgttcttgtt gtggtttttc ccagtataat tgcactactc cttagctata tcctctataa
     2881 aaatcataag tcatttttta ctaagattct atatagaatc ttatctatga taggcaagga
     2941 caaaccataa tgcaaaaact tatatatcaa aaccacgact accaacaaat acaaatccaa
     3001 caaacacaga aacatttcaa tcttggttgt gattttatag ttacaagcaa aggttttaaa
     3061 aatattaaga ttccaaataa tttggataca aagaatctat tgaggattat agtaaaagtg
     3121 aggcgagata atgactgatg gatttgggtt tttagcatat gtctttacat tgcctgtatt
     3181 gattcttggt ggtatatctt atgtatgtat agtatttttg ataagatttc aaagcttttg
     3241 tgggtttgta tgttcaaaaa gtttttggat tgcttggctt ttttcatatt atttattatt
     3301 tttgattatc tgcattactt gtgaatggga gttattaata atgtatatct gtggtatttc
     3361 tttacctttg gtatattttt taagaaaatt ttttatgcaa tcacattcaa atctagctct
     3421 aaacgaattt tcattatgga ttatcccaat gagtattttc tctctttgta ttcatagtag
     3481 cctgtgcgtt gctattgcat ggatgttaat attttttcaa acaaattatg atacccaaac
     3541 acttcaatct tggcttagat ttctttttat atagctctat atttttagat attgtgctag
     3601 aggagtagtt attatgtttg aagcgacaaa aaatacagag taaattaaag gagttcttat
     3661 gcaaaagttt ttaatagttt taaggatttg tgttacttta agtattaata ttaatgctca
     3721 atctccagaa gaagctaaac ctagctttaa ttgtgctaaa gcaaaaagca aggttgaaaa
     3781 gatgatttgt agtgataaaa gtggggagtt acaaaaactt gatagattat attctaaact
     3841 ctatttttca atactaaaga gtatccctaa agatacaaaa aggggcaaaa aacaagagaa
     3901 aaactgaaat attttaatca tcctgttatg agtaatagaa atatatttca atgctatttt
     3961 gcaaaataat ataaaaatct acaaccaaaa tcctgaaaat atcaaccaaa aacttaatga
     4021 aaatatggtt tttgagcttg cagataatga agcaaaagaa gttaaaaaaa tcatttcttt
     4081 tgagaaaata cataatctaa gaaaaaaact tcaaaaatgg aatgcaaact atcttacttc
     4141 ttttagtaag acagaattaa ccaatccaca agagtttatt cccttattgt ctatttatta
     4201 tcagcgtcca gcaagattta acccagagag tggactcatc ttgcttcaaa aagtccttaa
     4261 agataagaat agatttttag tgtggtttct gtgcgttatt atgctgatat acgacaattc
     4321 aaaaaccctt attattctcg cagaatccaa gaatctaact ttagagaagc caataccaag
     4381 caaggactga agctgccaga taaatacact tatctttctt ttatgcaaac ttataagaaa
     4441 tgcaaagaag ttgatgaaaa aaacagagta tctcttaaga gaatacaata catattatac
     4501 taaagacaaa cactattatt cttatgttgc taaagaagaa tttcagggta tagctgatat
     4561 tctcgctccc tatcttaatt acctaaacac cctcactcaa aaaaatttta gcttagataa
     4621 tatttattgt attgctaatt attgtgagaa tttaggcgct aataaattgg ataatgttgc
     4681 cttgcttaat aaaactttaa gacaaaagtt tgaaaaacta gaagcaaata caccccataa
     4741 tattcttatc ctctatccaa atcccactcc atctattata caaatagaac aacctaaaaa
     4801 tacttttatt actttactta taggagcaaa agcaaaaata gattgcacta aattgataga
     4861 agatcaatgc gagctaatgt atttaaaata tgatccaacg caagaagaac aacaaacaag
     4921 taatccgcaa gctttttctt gtagcaccca agaagaactt atttaaaaaa aagaaaatga
     4981 aatatacttt aaagcagtaa aaaacaatat atcatatttt attaataaaa acgatgggat
     5041 tttaaaagtt gctcttgctg gtaatgaaga aaatgctata gaattataca gttttgctaa
     5101 agaaaatcaa tttaaaattt tgcaagataa aacctcaaag atgctaaaaa tctatttaaa
     5161 actagaaaga tatagtagcg aagagatttt atcgcataga gggggaattt tgaattaaca
     5221 cttaataatc ttaagatttt agatgaaaat ggaaacaatt atgaaaccat cactaaagta
     5281 tttcttcata attgtgagaa tagaaggatt tatgaaagtt taaagttaga acatcaagaa
     5341 ggcatttata agagcagttt caagattgat ttaattttag atacaaactc ttcttttttt
     5401 aaaagggcta caaaatgtat tatagctaca aaaaccttag aaggctttag cacaagtcaa
     5461 atgcataaaa ttggaaatgt ggcaatagtc tctttaagtt ctgcagataa gaaaggtgga
     5521 agctatactt ttacaaataa ggtaagcatg caagattttg gagaaaatct ttatttagat
     5581 actgaggcaa atgggtatga aaaacaaata aaaaattcaa gagagaattt atatatcaca
     5641 aatttgaaag cttataaaga aaaagaacag caaaatacta ctgataaaat cccttacaat
     5701 gaaactattt ttattagagc ctacttaaat aatgaggaga atttttcttc gatgagacaa
     5761 ttaaatgggc atattgtata aaaaaagaag aggaattaga atgtaatcaa tctaaaatta
     5821 aaattttaga aaatcttcaa ggaaatgata taacctttaa tacttctatg ctttcacaag
     5881 atgataggaa taaactttat aatatgaatg aaaaatatca attaatctta tttgcttatt
     5941 ttagtgcacc tgcatttaaa acaacacaag gaataacgca tttagtgtta aaatgactaa
     6001 agatttaaac tatacaaaac aaagcca
//
LOCUS       DAPIWU010000100         5896 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.101, whole genome shotgun sequence.
ACCESSION   DAPIWU010000100 DAPIWU010000000
VERSION     DAPIWU010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5896
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.101"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            61..756
                     /locus_tag="RJ285_001512"
     CDS             61..756
                     /locus_tag="RJ285_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDV7384252.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLSEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            753..2006
                     /locus_tag="RJ285_001513"
     CDS             753..2006
                     /locus_tag="RJ285_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HDV7384253.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHKCGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     ESKFESSKYEKEITTLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            2007..2501
                     /gene="purE"
                     /locus_tag="RJ285_001514"
     CDS             2007..2501
                     /gene="purE"
                     /locus_tag="RJ285_001514"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDV7384254.1"
                     /translation="MNFVSILMGSKSDYETMKEAVKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2511..3047
                     /locus_tag="RJ285_001515"
     CDS             2511..3047
                     /locus_tag="RJ285_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HDV7384255.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3059..3922
                     /gene="glyQ"
                     /locus_tag="RJ285_001516"
     CDS             3059..3922
                     /gene="glyQ"
                     /locus_tag="RJ285_001516"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDV7384256.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3909..4634
                     /locus_tag="RJ285_001517"
     CDS             3909..4634
                     /locus_tag="RJ285_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDV7384257.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMICKNISLISMHTNYDL
                     SHLNIYFTEEILGFKISFKDEFLIYVENSISFEALCDWVKKKLNLQILRVSNCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            4644..5360
                     /locus_tag="RJ285_001518"
     CDS             4644..5360
                     /locus_tag="RJ285_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HDV7384258.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINRTLKDAELKIGKINT
                     DLEKIDEEIKDIENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVGEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            5357..>5896
                     /locus_tag="RJ285_001519"
     CDS             5357..>5896
                     /locus_tag="RJ285_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HDV7384259.1"
                     /translation="MIFFYYFLTWAAFLFCAVFILLLSFLKSKYKTSLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKTLVLKFDSRITTITQTGFEYAKEFCKKVNYLAFENFL
                     PFWFKPCKVLVIFEAEYWLMLVFMAHIYKTKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSELDKVRLESL"
BASE COUNT         2191 a          680 c         1115 g         1910 t
ORIGIN      
        1 ataaaattga ttataatttt gagcaattat tgaaaatcta gatttaaaaa agggaaaaaa
       61 atgactcaag aagagcttga tgctttgatg aatggtgatg ttgatcttga ttcagagaca
      121 gaagcagagg taaaaaccga agaatcgaat accgaagaag atgctttgat gttagaagat
      181 gtcaaaatag ctgattacaa acctaatcct agcgtggtat ggccaccacc cccaccaaat
      241 caggagcata aagttgtaca tcagttagat gatgttacaa aagatagcga gcttaaagca
      301 acggaaatga tggataagct tgaaagtatt aataattttt ttgcggattc tgaaagttta
      361 ctcaaagaga taaataaagc aatagaaaaa aatattgata ttttttctaa acttagtgaa
      421 aaatttccta atgtggaaag tttcagtgaa gctttagaat taaacaatca agctaaaaaa
      481 agttctaagg agattgtcgg aaatcttcaa agcggacaag atgaagtgat gatggcaatg
      541 gatgcaatgc agtatcaaga tatacatcgt caaaaaatcg aacgtgttat taatgtaatg
      601 cgtgctttaa gccgttatat gagttcctta tttgaaggta aaattgatga taaaaaacgt
      661 gtaagttctg cagtgcatat tgaaggtgat agtactgctg atgttgtaag taatgatgat
      721 atagaagctt taattgcaag tttagggcaa aaatgatcat tcctgaaata gtagctcctg
      781 caggaaattt cacaaaatta aaaattgctt tagcttatgg cgcagatgcg gtttatgcgg
      841 gtgtgaataa tttttcttta agatcacgca ctgcaagaga atttaattat gaaagttttg
      901 aagaagctat taaatatacc cataagtgtg gtaagaaaat ttatgttact ttaaatggtt
      961 ttcatttaag ctcccaaatt gaaggtttaa aaagacatat tttaaaattg cgtgagatga
     1021 aacctgatgc ttttattgta gcttctgttg gagctatgcg tcttgttaaa gaacttgcac
     1081 ctgaaatttc tttacatgtt tctactcagg caaatatttt aaattattta gatgctcaag
     1141 tttataagga tatgggtgct aaaagggttg taattgccag agaattaggg cttaaagacg
     1201 ctaaagcttt aaaggaaaat tgtgatattg aacttgaagc ttttgtgcat ggttctatgt
     1261 gttttgctta ttcagggcgt tgtttaataa gctctgtgca aagtggaaga atgagcaatc
     1321 gtggatcttg tgcaaatgac tgtagattta attatgagct ttatgctaaa aatccagaaa
     1381 atggcacttt atttcgctta gaagaagatg aaaatggtac tcatgtgttt aattctaagg
     1441 atttaaatct ttgttcttat atagaaaaaa tcatgcaaga aaattgtatc agtgctttta
     1501 aaatagaagg gcgtactaaa agcgaatatt atgttgcgct tacaacaagg acttataaaa
     1561 tggccataca agatgcttta gagagtaaat ttgagtcaag taagtatgaa aaagagatta
     1621 ctacacttaa aaatcgtggt tttacagatg gttatcttgt ttcgcgtcct ttagaaaaaa
     1681 ccgacacgca aaatcataat acaagcatag aagaaggttc tcatcaagtg catgctataa
     1741 gcgaagatgg aagctttttt aaatgtaaag ggaaaatcgt tttaaacacg ccttatgaaa
     1801 ttttagcccc tttaggcgat gtgattcaaa cttgcgataa tgaactaggt aaaatttatc
     1861 aaaaagagga taaatatttt atagagttta aaaaactcat tgctaaaaac aataaagaat
     1921 ttagcgaaat tcatagtggc aatgaacatg aaatccaatt accaaataaa atcagtgcat
     1981 taagtttttt aagaaaggaa atatagatga attttgtttc tattttaatg ggaagcaaga
     2041 gtgattatga gactatgaaa gaggctgtta aaactttaga aagttttggg gtaaagtatg
     2101 aacttatcat ctcatcagct catcgtagtc caaaaagaac aaaagagtat attgcaaatg
     2161 ctgaagaaaa aggtgcgaaa gtttttatag cagcagctgg aatggcagcg catttagctg
     2221 gagctgttgc agcttataca acaaaacctg ttttgggagt gcctatgtca ggaagcaatc
     2281 ttgcaagtat ggattcttta ttttctacgg tgcaaatgcc tagtggaatt cctgtaggaa
     2341 ctttagctat tggtaaggct ggagcgatca atgctgctta tttggctatg caaattttag
     2401 ctatttatga tgttgattta gcacaaaagc ttaaagaaga tcgtcttgaa aaagaaaaaa
     2461 aacttgtatc tgattcaaaa gaagtagaag ttttattata agggataaaa atgcaaacct
     2521 atcttgaact tgaagaattt tgtaaacttg tgcatttaaa tgaagatgtg gttaagggta
     2581 tgatggccaa tggggcttta aattttaaag aagaagaggg taaaatttac atcgaagctc
     2641 atcaaggtac ttttagtgta gtacctagtt ctgcaaaatc tcaaactgca atggtaaatt
     2701 caatgacttt agcaggagaa agttttgttg aaaaaacaat aggaactatt ttaaatttgc
     2761 atgaaaaagt tttagatgct aaagatgaaa cacttgaagc attaaaaaat gagaataaat
     2821 ttttaaaaga cgctctttat tctatgcaag aactttatga tgaagataga aaaactatag
     2881 aaaccttaaa caatgagcta aaacatgcgc gtgaagagat agaatttctc aagcgtaaat
     2941 ataaattaat gtggagtaaa accgcagaaa tttttggagc taagacagag cctgatttgg
     3001 aaatgaataa aaatttagaa aaacctattg aaaatatgga acaataaaga gagatgcaat
     3061 gactttttca caaatgatac ttaatttaca aaattattgg caagagcaag gttgtgcgat
     3121 tatgcaacct tatgatatgc cagcaggtgc aggaaccttt catccagcaa cttttttaag
     3181 aagtttagga aaaaaacctt gggcagctgc ttatgtggct ccaagtagaa ggcctactga
     3241 tggacgttat ggtgaaaatc ctaatcgctt aggtgcttat tatcaatttc aagttttgat
     3301 taaacctagt cctgataata tccaagaatt atatcttaaa agtcttgaaa atttgggttt
     3361 tgatttaaaa agtcatgata ttcgttttgt tgaagataat tgggagagtc caagtttggg
     3421 tgcttggggt ttaggctggg aagtatggct tgatggtatg gaagtcactc aatttactta
     3481 ttttcagcaa gttggcggta tagcagtaga tttagtaagt gctgaaatta cttatggtct
     3541 tgaaagaata gccatgtatc ttcaaaatgt tgataatgtt tatgatatag tttggagtga
     3601 atttaatgga gaaaaaatta aatacgcaga tgtgcataag caaagtgaat atgaatttag
     3661 taaatacaat tttgaagtaa gtgatgttaa gatcttaaat gagcagtttg aaaattctta
     3721 caaagaatgt aaaaatattt tagaacaagg actagcttta cctgcttatg attattgtat
     3781 gcttgctgca catactttta atcttttaga tgcaagagga gcaatttctg tagcacaaag
     3841 acaagattat atgttaaaaa ttcgtgaact ttcaaaaaat tgtgctgaaa tttataagaa
     3901 aaatttaaat gaagctgagt gaaatttata attttttaga tcaattaagt ccctttgata
     3961 tccaagaatc atgggataat agtggaattt tgcttggaga tagggatagt gaaatttcaa
     4021 ctgtttattt aagcttagat attgatgaaa atatcattaa agaagcgagt gaaaattctt
     4081 taattatcac acaccatcct ttgatattta aaggtttaaa agatttatat gacaagactt
     4141 atcctagagc ttttattaaa gaaatgattt gtaaaaatat ttctttaatc agcatgcata
     4201 caaattacga tttaagtcat ttaaatattt attttacgga agaaatttta ggttttaaaa
     4261 tttcttttaa agacgaattt ttaatttatg tagaaaattc tatatctttt gaagctttgt
     4321 gtgactgggt gaaaaaaaag ttaaatttac aaattttacg tgtaagcaat tgtggtaaaa
     4381 aagacattaa gcgtattgct atatgtactg gaagtggcgg ggatttaatt tctaaagtag
     4441 atgcggattg ttttttaagc ggagatttta aatatcatca agctttagag gcacttagta
     4501 atcaaatcag tcttattgat ttgggtcatt ttgaaagtga gagatatttt tctcaatgtt
     4561 tagcaaaaga cttgaaaaat ttgccgctac aagttataat aacagtttca aaaaatccat
     4621 ttcaatattt ttaaggaaaa taaatgaata aatatctcga acaattagtg cttttatcaa
     4681 aaatagatca agaaattgat agttatgaac caaaaataga cagtattaat aggactttaa
     4741 aagatgctga gttaaaaata ggaaaaatca acacagattt agaaaaaatc gatgaagaaa
     4801 tcaaagatat agaaaatcaa aaagtacaaa ataatgctca tatttctgag ttttcggcaa
     4861 aaattaaaga gctttctaaa aaaagtggtg cagtaaaaac agaaaaagaa gctaatgctt
     4921 taaaaattga agaagatatt gcaaaagagc aattagacgc tgcaaatgat gaaattgtaa
     4981 gactggataa aattttagag aataaagaaa cttataaaaa agaacttgaa gaagaaaaaa
     5041 ttaaacaaga gcaaaatatt aatgagatta gagtaagcat taaatctgaa atggaagttc
     5101 ttgaaaaaga tagaatgagt gtttatgata aaaaaaccaa acttgtgggc gagatgaatc
     5161 aaaaagtttt aagtttttat gaaaaaattc gcaaatgggc gaaaaatact gctgtagttc
     5221 ctgttaaaaa acaagcatgc tatggatgtt ttatgaaaat ttacgataag acttatctgt
     5281 ctgttgtaaa aggtgaagag attgtaactt gccctcattg tggaagaatt ctttataaag
     5341 agcaagaaga acaaaattga tcttttttta ttatttttta acttgggcgg catttttatt
     5401 ttgtgccgtc tttattcttt tgctttcttt tttaaaatcc aaatacaaaa ctagtttaaa
     5461 atcccgattt tttctttata aaaatttaca tcaagaaaaa gctgatgtac attttcatgc
     5521 ttgttcttac ggggaggtaa gaagtattaa aactttggtt ttgaaatttg attcaagaat
     5581 aactactatt actcaaacag gttttgaata tgcaaaagaa ttttgtaaaa aggtaaatta
     5641 tcttgctttt gaaaattttt tgcctttttg gtttaagcct tgtaaggttt tggtaatttt
     5701 tgaagcagaa tattggctta tgcttgtttt catggcacac atttataaaa ctaagattat
     5761 tttgcttaat gcaagaatat ctgataaatc ttatcattct tatcaaagat tttctttttt
     5821 ttataaaaaa attttttctt atattgatga agtttttgct caaagtgaat tagataaagt
     5881 aagacttgaa agtttg
//
LOCUS       DAPIWU010000101         5825 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.102, whole genome shotgun sequence.
ACCESSION   DAPIWU010000101 DAPIWU010000000
VERSION     DAPIWU010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5825
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.102"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            30..479
                     /locus_tag="RJ285_001520"
     CDS             30..479
                     /locus_tag="RJ285_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDV7384260.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            544..1581
                     /locus_tag="RJ285_001521"
     CDS             544..1581
                     /locus_tag="RJ285_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7384261.1"
                     /translation="MKVLNFFYENHPKFEVSYERKIQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKI
                     PIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKILKTSKDSVYQAIKKLENTYV
                     IYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNF
                     YSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFE
                     VISFDKFSLGF"
     gene            complement(1578..2309)
                     /locus_tag="RJ285_001522"
     CDS             complement(1578..2309)
                     /locus_tag="RJ285_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HDV7384262.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(2284..3033)
                     /locus_tag="RJ285_001523"
     CDS             complement(2284..3033)
                     /locus_tag="RJ285_001523"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDV7384263.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEKVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(3030..3635)
                     /locus_tag="RJ285_001524"
     CDS             complement(3030..3635)
                     /locus_tag="RJ285_001524"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDV7384264.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKTRLD
                     SQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM"
     gene            3696..4685
                     /locus_tag="RJ285_001525"
     CDS             3696..4685
                     /locus_tag="RJ285_001525"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDV7384265.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIGDKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            4897..5139
                     /locus_tag="RJ285_001526"
     CDS             4897..5139
                     /locus_tag="RJ285_001526"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384266.1"
                     /translation="MHNLNEALFQKKIKEIRLKAIASIICGFLGIIPYLGVLFVLASW
                     ILFFIVLYDLKIYGDAKNLFKNFLISVGIGFFWSSC"
     gene            5257..5611
                     /locus_tag="RJ285_001527"
                     /pseudo
     CDS             5257..5611
                     /locus_tag="RJ285_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779492.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1938 a          768 c          910 g         2209 t
ORIGIN      
        1 aattttaaaa atcaaaaaag gagtcaatta tgtcagttac aaaacaatta ttacaaatgc
       61 aagcagatgc tcatcatcta tgggttaaat ttcataatta tcactggaat gtaaaaggtt
      121 tgcaattttt ttctatacac gaatacacag aaaaagctta tgaagaaatg gcagaacttt
      181 ttgatagttg tgctgaaaga gttttacaac ttggcgaaaa agccatcact tgccaaaaag
      241 ttttaatgga aaatgcaaaa agtccaaaag ttgcaaaaga ttgctttact ccacttgaag
      301 tcatagaact gatcaaacaa gattatgaat atcttttagc agaatttaaa aaactcaatg
      361 aagcagcaga aaaagaaagt gataccacaa cagctgcttt tgcgcaagaa aatatcgcaa
      421 aatatgaaaa aagtctttgg atgataggcg ctactttgca aggtgcttgc aaaatgtaat
      481 ttaaggggct ttatgcccca attatacaaa ctaggttata atatcctttt ttaaaggata
      541 aaattgaaag tacttaattt tttttatgaa aatcacccta aatttgaagt aagttatgaa
      601 agaaaaattc aaatttcaaa accaaatatt atcataaaag gcccacgatt ttgtggtaaa
      661 aaaacactta tttttaattt tttatctcaa tttaaagcaa gtgaaatttt gtttttagat
      721 ttatatgata cacgctttga aaaacaaagt ttagaaagac ttgctgattt tctgaatgaa
      781 aatttacaaa ttaaaattct ttgcctttat aatttggatt ttatccctaa tttagaaaaa
      841 attaaaattc ccatcatctt aagtacaaat ataaaagatt taaatataaa tgggtttgaa
      901 gaacttgaac ttgattattt tgattttgaa gaatttatta gtgtaagtaa gaaaaattta
      961 cctataaata atttagtagg tcttttttta caaagtggac gcagtaaatt tggagaaaaa
     1021 aacatacttc taagacaaag ctttactctt ttagaattag aaattttaaa gtatttagct
     1081 ttaaatttgg gtcagcaaat cagtatttct aagatattta tagaacttaa aaaaatatta
     1141 aaaacttcaa aagatagtgt ttatcaagct ataaaaaaat tagaaaatac ttatgtgatc
     1201 tatactttaa aacatgatga aaaaaaactt caaaagattt attttaaaga ttttggccta
     1261 agaaataatc tttgtatttc aaaggatttt tcgcatttat ttgaaaattt agttttaagc
     1321 gagttgttta aatttaaaga agattttttt tataacaaat actttaactt ttatagccaa
     1381 atatctaaaa ttgcttatat ttcaagtcca actttagata ttgatttgat taaattacgt
     1441 gctaagaaaa ttttaccaaa ggctttagaa cttggaattt ttcatgtgat ttttatcact
     1501 ctttcaagcg aggatagttt ttttgagcaa ggggttaaat ttgaagtcat atcttttgat
     1561 aaattttcac ttggatttta ggtgttgttt gagtttgtat cgtatttttc aaggttgtat
     1621 cgtttgatga tttttgtaat aagattgata taatatccct tgcgttcaga ataagaatct
     1681 aaagttttaa tagcctctag tcctgttatc tctttgcctt cgcttgcaaa tttagctctt
     1741 gcatcgcgaa acttttcata agcaaaatga cgatttaaat ttaaaacata agagtaaaca
     1801 ctatcttgca gactatcaaa aatcttaatt ttatgttttt tatctggatg tcttaaatca
     1861 ggaattaaac ctttctcacc ccaagtccat tctccaaaaa gattatttgc ttctcttgcg
     1921 aagcgacttg tacctgtagc actttcaact aaagcttggg ctatacccat ggattttgga
     1981 attttttgaa tacgtttttt atattctgca aaatcataaa gattttcaat gcgatatttg
     2041 ttttttatcg tgataagttt ttcaagattt gtttgatttg aagtcctaaa gcctgttttg
     2101 taagcatctt taaaaaaggc ttcgataaaa gctctttctt gttcaatttt tttaaagctt
     2161 tgatcaaaca tttcattcat ttttataaaa aaaatttgtc ttttttgatc tatatcaagt
     2221 ttgtaatatt cctctccaaa gccatttttt agatcatcag caaaaagtgg gattagaaaa
     2281 agactaagaa aaattataat tggcttcaaa acaatacttt acctttcctt caaaaaacaa
     2341 ttcttcattt ttatatgtaa acccaacctt ttcaccactt ttaggagtta ttttaacttt
     2401 attttgtact tttttattta aaaatgccag ataaaaacaa gcccccattc ctgtgccaca
     2461 agctaaggtt tcatcttcaa ctccgcgttc ataggtacga acttttaaat gattttcatc
     2521 taaaattttt acaaaattaa cattggcatt atatttttgt ctcatttttt gacaaagtat
     2581 tgtatcaaat tcatctaaat tttgacaaaa atgcactaga tgtggaactc cagtgtcgca
     2641 aagttgccaa gtttttccta attcttcaaa agtattttgc acgcttttta ttttgcctaa
     2701 agatacttca actttatctt gatttacctt tgcttttatt attcctgcac cggttaaaaa
     2761 actcatgtta ggatttattt tgttaatatg atgtgcaaaa tgtgccgcag cccttgagcc
     2821 attgccacac atagcagccc ttgagccatc gttattataa aattcccatt caaagtcgta
     2881 tttttcatga ggcaatatca cgataaagcc atccccacct atgccctcat aacgattgca
     2941 aagttcttta gctaaagcac ttctatcttc ttttctatca gcatttgtta tgacaaaatc
     3001 attcccactt gcacaatatt tataaaattt cacatttttc ctttagaaat ttcttgtatt
     3061 actttaacac attcttgcct aaaatcgaca taagaattag tatttttaat gataaaatct
     3121 gcttttttaa gtttttcttc aatatctatt tgagaatcaa gtcttgtttt tgcagcttct
     3181 aagctgagct tatctctttg catgattctt ttaaggctta attctttagg tgtgtaaatt
     3241 acaatgactt tgcctaaatt ttcataagca ccgctttcaa aaaaaagagg aatttctaca
     3301 aaaaaagctt tattttcttt atctagaatt tgcatttgtt ctaaaatttt agctcgaatt
     3361 ttaggatgag tgaaattttc taaggttttt ttagcttctt tgttgttaaa aacaatttct
     3421 ccaaggattt ttctatcgat tttcttttct tttgtgagta aattttttaa gttaaaggga
     3481 gaaaaaatct tttcaagttc taaagcattt tcatctaaaa ttttatgagc aattttatct
     3541 gcgctaatgc ttttaaagcc taaagaattc gctatttcta taaaagtgct tttaccacaa
     3601 gcaattgaag cggttacaaa aaaagcattt ttcatcttat gccttattaa aacttttttc
     3661 gttaaaatac ctttttagtt cttaaaggaa aataaatgaa aatttcatat gaagatgcag
     3721 gcgtaagtat agataatgga aatgcctttg tagaggctat aaaacctttg gttaaagaaa
     3781 cttttaatga taatgttgta ggcggaattg gttcttttgc tggtgctttt agaatgccaa
     3841 gtggttttaa aaagcctgtg attttaggtg caacagatgg tgttggtacc aagcttcgct
     3901 tggcaattga tgctaaaaaa tatgatacta tagggcaaga tttagtagca atgtgtgtga
     3961 atgatttgat ttgtaatttt gctacgcctt tgtttttcct agattattat gctacagcta
     4021 agctcgaagt agaagtagca aaggctgttg tatcaggcat tgccaaggga tgtaagatgg
     4081 caaattgtgc attaatcggc ggagaaactg ctgaaatgcc tggaatgtat gcaaaagatg
     4141 attttgatct tgcgggtttt gcagtgggta tggctgaaga agatgagatc gatagaagta
     4201 aatttgttaa aaatggtgat attttattgg cacttcctag ttcaggactt cattcaaatg
     4261 gttattcttt agctagaaaa gtactttttg aaagtttaaa attaaaattt gatgacaaga
     4321 taggggataa aaatttaatt gatattttat tagagcctac aaggatttat gtgcgtgatt
     4381 ttcttacatt aaagccttat attagtgctc tagctcatat tacagggggt ggtttagtag
     4441 aaaatttacc acgcgttttg cctcgtggta tgggtgcaac tatacgcaaa catcatctta
     4501 aaactcctga aattttttat actataggac aggctgtaga agaaagcgaa atgtatagaa
     4561 gctttaacat gggagtgggt ttagtaatgg ttgtagatcc ttctaatgta agtaaggttt
     4621 tagaaaattc agatgccttt attatcggcg aaatttgcat taatgaaggt attgttttag
     4681 agtgaaaaca aattattatg attatttatg tgctaaaatg tatgtaattt tgcccataaa
     4741 agcccataaa gacaaactaa aattttatct ttcttatgta aataagaaag ataaaatttt
     4801 tagagttaat gtgtggaaat gggcggtttt gataaaaatt gccaaagatg ataaaacgaa
     4861 atatttttgt tcgaatgtat taaataaagg ataaaaatgc acaatttaaa tgaagctttg
     4921 tttcaaaaaa agataaaaga aattcgctta aaagcaatag cgagtattat ttgtgggttt
     4981 ttaggtatca ttccttatct tggagtttta tttgttcttg cgagttggat tttatttttt
     5041 attgtgcttt atgatttaaa aatctatggt gatgctaaaa atttgtttaa gaatttcctt
     5101 attagtgtag ggattggatt tttttggtct tcttgttaat acaagtattt tatttgcaat
     5161 gctaaagcct agaactggca tttttggtgg gctttatttt aatcaagata atattttatg
     5221 gctattgcta tatttttagt attacatttt gctattttgg ctttgatttt tccttttttg
     5281 aaagcttttt cttatgaaat cgctagagta acaaagcaaa agtattttat ttatgctttt
     5341 aatacttgtt tttttagggc ttcttacttt gattatcggc ataggcttgg tgtttttgct
     5401 agcaagtttg gttttttgga ttttagcgtg ggtcaaattt aaagaatttg atgagcaaga
     5461 actttcaaat ttagaagaaa gattggcaaa agcacaaaaa aaggtttttg attttgattt
     5521 aaaatggatt aaaatcacaa tggcttcatt tataatttta aacttgctcg ttttaacatt
     5581 ttcgtttata ttagaaatta ttagctttga agattttagg ttttactaca caaaaaaaac
     5641 tttattttac acagccataa ttctagcttt gcttagtgtg tttttgtttt gtaaaaagat
     5701 aaaaaattac aaacttttta tttatttttt tatatggcaa ggtttaagtg tttttggtag
     5761 tcatcttctt tttattcctg attttatggt agatcaacga ccagaaattg tatatggaag
     5821 tttaa
//
LOCUS       DAPIWU010000102         5757 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.103, whole genome shotgun sequence.
ACCESSION   DAPIWU010000102 DAPIWU010000000
VERSION     DAPIWU010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5757
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.103"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..2457
                     /locus_tag="RJ285_001528"
     CDS             <1..2457
                     /locus_tag="RJ285_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HDV7384267.1"
                     /translation="EQAFKSLLMRVFGGENEKEDVGKSEPIAPKLNILQDSIYGNLQI
                     NKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEIDKQSLKESRSFV
                     HEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKLEDIKQIDTNKNL
                     DEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKAYQNEILENKVKQ
                     EIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESDKINENKNLDKADNIFEFAPI
                     VEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQEIKLQKAVLAKE
                     IAINQALLREIEQGEVEKPKDFTLPPLDFLANPKEHKQEINESEIDKKIYNLLEKLRR
                     FKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAKSIRIQAPIPGKD
                     VVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFVTDLKKLPHLLIA
                     GTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIPHLLTPVITDPKK
                     AVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIVVIIDELADLMMT
                     AGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSRISYKVGQKIDSK
                     VILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDFLKDQQSVEYDES
                     FLKDQQSVGVTTNESFDGEVDELYEEAKRVILEDGKTSISYLQRRLKIGYNRSANIIE
                     QLTQNGILSEPDAKGQREIL"
     gene            complement(2543..2815)
                     /gene="rpsO"
                     /locus_tag="RJ285_001529"
     CDS             complement(2543..2815)
                     /gene="rpsO"
                     /locus_tag="RJ285_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDV7384268.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            2990..3400
                     /locus_tag="RJ285_001530"
     CDS             2990..3400
                     /locus_tag="RJ285_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HDV7384269.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            3387..5561
                     /gene="flhA"
                     /locus_tag="RJ285_001531"
     CDS             3387..5561
                     /gene="flhA"
                     /locus_tag="RJ285_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HDV7384270.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTATPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            5570..>5757
                     /locus_tag="RJ285_001532"
     CDS             5570..>5757
                     /locus_tag="RJ285_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-to-5' oligoribonuclease B"
                     /protein_id="HDV7384271.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVKFYNSNYGKEINENFNS
                     IIGDIEKDENFGKAIILIT"
BASE COUNT         2139 a          789 c         1014 g         1815 t
ORIGIN      
        1 gagcaagctt ttaaatcttt acttatgcgt gtatttggtg gagaaaacga gaaagaagat
       61 gtaggtaaat cagaacctat agctccaaaa ttaaatattt tgcaagatag tatttatgga
      121 aatttacaaa taaacaaaaa aggggaaacc aataacttag aacagataat taaagatagc
      181 aatatcaatg caagtaaaaa ttcaattacc acggccaagg aaaattttga aaaactaaaa
      241 aatcaaattt tagatgaaac catagagatt gataaacaaa gtttaaaaga atcaagaagt
      301 tttgttcatg agcattctca acaagtgcga aatttcgcac aaaaggctag taaaatgagc
      361 attagtcttg atgaagattt taattttatt tcagaagaag aggtagatat gattcctgaa
      421 cgttttttaa aacctaaaaa acttgaagat ataaagcaaa tagatacaaa taaaaattta
      481 gatgagccaa gttataaacg taaaaatatt gaaattccag tttctaatca agaagttaaa
      541 ccaaaaattt ttacaaaaga gcttgaactt agagagaatt tgataaaaaa agaaaaacta
      601 gaacaagaat acaaagccta tcaaaatgaa attttagaaa ataaagtaaa acaagaaatt
      661 aaaaaattag aagaatatga tgcgataaat tcaagcgata ttatagaagg gaataaatat
      721 agttttaata gcccaaaaac aattaaaaca gaaacagaag aatcagacaa aataaatgaa
      781 aataaaaatc tagataaagc agacaatatc tttgaatttg ctcccattgt agaagagtta
      841 aatcatcctt atatagaacc tactcctata aaaaatataa atgaaatagt tatagaagaa
      901 aaaaatacac tcgattttat ccaaaataca gaaactaaaa tcgataatga aaaaacaaat
      961 gatcaagaaa ttaaacttca aaaagcagtt ttagccaaag aaattgctat taaccaagct
     1021 ttattgcgtg aaatagagca gggcgaagta gaaaaaccaa aagatttcac cttgccgcca
     1081 ttagattttt tagctaatcc aaaagaacac aaacaagaaa tcaatgaaag tgaaatagat
     1141 aaaaaaattt ataatcttct tgaaaaattg cgtcgtttta aaataggcgg cgatgttata
     1201 agcacttatg ttggtcctgt ggtaactact tttgaatttc gtcctagtgc agatgtgaaa
     1261 gtaagtcgta ttttaaattt acaagatgat ttaactatgg ctttaatggc aaaatcaatc
     1321 cgtattcaag ctccaatacc aggaaaagat gttgtaggta tagaagttcc aaatgatgaa
     1381 attcaaacca tttatttaag agaaatttta caaagtgaag tttttaaaaa cgctaaaagt
     1441 cctttaacca tagctttagg taaagatata gtaggcaatg cttttgtaac cgatcttaaa
     1501 aaacttccgc atttactcat cgcaggaacg acaggtagtg gtaaaagtgt ggggataaat
     1561 tctatgcttt taagtctttt atatcgcaac tctccaaaaa ccttgcgttt gatgatgata
     1621 gatcctaaga tgcttgaatt tagcatttat aatgacattc ctcatctttt aactcctgtt
     1681 atcacagatc caaaaaaagc agtcaatgcg ctttcaaata tggtagctga aatggaaaga
     1741 cgctatcgct taatggctga tgcaaaaacc aaaaatatag aaaattacaa tgaaaaaatg
     1801 aaagaattag gcggagaaga acttcctttt attgtagtaa ttatcgatga acttgctgat
     1861 ttgatgatga ctgcgggtaa agatgtagaa ttttatatag gaagacttgc gcaaatggca
     1921 agagcaagtg gaatccactt gattgtagct acacaacgac cttctgttga tgttgtaaca
     1981 ggactaatta aagcgaattt accaagtaga atttcttata aagtagggca aaaaattgac
     2041 tctaaagtta ttttagatgc tatgggtgct gaaagtttac ttggaagagg ggattgttta
     2101 tttactcctc ctggaacaag ctctatagtg cgtttgcatg cgccttttgc aagcgaattt
     2161 gaaatagaaa aaatcgtgga ttttctaaag gatcaacaaa gcgtagaata tgatgaaagc
     2221 tttttaaagg atcaacaaag cgtaggtgtt acaacaaatg aaagctttga tggggaagta
     2281 gatgagcttt acgaagaagc taaaagagta atcttagaag atggaaaaac aagcatttct
     2341 tatttacaac gccgtttaaa aatcggctat aaccgctctg caaatattat tgaacaactt
     2401 acgcaaaacg ggattttaag cgaacctgat gccaaaggac aaagggaaat cttgtaagat
     2461 ttttcttgtg tttttgatat ataaaactga ttacaaaaga agaaatttaa aaggcaaaag
     2521 ccccgtaaaa agggcttaaa aattatttat ctctaagatt taattcagta attaacttac
     2581 tataagaatt ataatctttt cttttaagat aagataaaag tctttttctt tgacctacaa
     2641 gttttagaag tcctaatctt gatgaaaagt cttttttgta gatttttaaa tgttctgtaa
     2701 gttctgcaat tcttgcagtt aaaagagcta cttgaacttc tgttgaacca gtatcacctg
     2761 gttttttagc gaatttcgca actatttctg cttttttggc cgaatccaaa gccatgatag
     2821 acctcctgat tggtaaaata ataaaattaa agaactgtaa ttttatctta aaaagcaaaa
     2881 aataaactga atttatcttt tttagaaggt tttgtcaaaa tttaagtctt tttctaagaa
     2941 ttatttatta taattacagc tatttctgta gttataacaa ggagaatctg tgctatttac
     3001 caaagctagc gaatacgctt tactttcttt aatttatatt tctcaaaaag aaacacctca
     3061 agatgtagat tctttagctt tagagcttga tattcctaaa agttttttag ctaaaatttt
     3121 acaaacttta gctaaagatg gcttgttaaa atcttttaaa ggggcaaaag gtggttttgt
     3181 tttaatcaaa gaaccaagtc aatatactat aaaagaaatt gttaatagtg ctgaaaaaaa
     3241 ggatatcagt gtatttgaat gcagtggtgg cacttgtcca aataataaag aagaaaattg
     3301 caccttaatg cctatgttag taaatttaca aaataaagta gatgaatttt tagattctat
     3361 tactttagaa gatattatga aaaataatgg caaaaaataa aatagtcgat ttagtttttc
     3421 ctttcttggg gcctttaatc gctcctgttt taaaagctaa aagcttgact attgttggtt
     3481 ttttagtttg tattttagct attattatag ttcctttacc aagtcctatt ttggactttt
     3541 tcttggcttt aagtatagct ttatcggtat taattatttt aatttctatt tatataccca
     3601 aaccgacaga tttaacaact tttccaactt taatcttgat tatcacttta tttaggcttt
     3661 cattaaatat agctaccaca aggatgattt taagcgaagg gcaaaacggc cctgaagctg
     3721 tgagtgagat tatagcagca tttggagaat ttgttgttgg tggaaatatg gtcattggcg
     3781 tgattgtatt ttgtatttta gtattgatta atttcatggt tgtaacaaaa ggtagtacaa
     3841 gggtttctga agtacaagca agatttacac ttgatgcgat gccgggtaaa caaatggcta
     3901 ttgatgcgga tttaaatgca ggacttattg atgaacaaac cgctagagca agacgtcaag
     3961 aagttattgc tgaggcaaac ttctatggtg caatggatgg ttcttctaaa tttatcaaag
     4021 gagatgctgt tgcaggaatt atcataacta ttataaatat cataggtggt tttttaatag
     4081 gatcttttca gcacgatatg gctttaagcg atgctgcttc tacctatact attttaacca
     4141 taggtgatgg acttgtatct caaattccag ggcttattac ttctactgca accgctataa
     4201 ttatcactcg tgcaagcaaa gatgaggaaa attttgcaga aggaacttta actcaacttt
     4261 taagcgaata tcgcacgctt ttaatagtag gttttgtact ttttatcttt gcgttagtgc
     4321 ctggtttgcc aactttatcc ttgggcttta tggctttagt atttttaagc cttggctatc
     4381 ttaccaagca ggttaaggaa ggtaaaattg atataactac agttaaaaaa agcaaaccaa
     4441 gtgccgcagc tgcatctcaa agtggagcag gtgggacaac ggcaacgcct gctaagaaaa
     4501 gcgaagaaga aattctcaaa gaagaagagc acaagattaa cgatatactc aaagttgaaa
     4561 ttttagaact tgaacttgga tacggactta ttaagcttgc tgaaaacgaa cttacagaaa
     4621 gaattcgctc aatgagaaga agtattgctg aaagtttagg atttttaatg ccaaaaataa
     4681 gaataagaga taatttaaga cttaaaccaa atgagtatag ttttaaactc aagggcgtgt
     4741 ctatagcaag tgctgaaatt tatccggata aatatttagc catggatagt ggttttatca
     4801 cagaagagat agaagggatt gctacaaaag aacccgcttt taactctgat gcactttgga
     4861 ttgatgcgaa tttaaaagat gaagcaacat taaatggcta tatagtaata gatcctgcaa
     4921 gtgttatttc aacacatatg agcgaactta tcaaagcgca cgcaagcgaa cttctcacac
     4981 gccaagaggt acaaaatctt cttgataagg ttaaaaatga ttatccaatc atcgtagaag
     5041 gtgctttagg tgtcgcacct gtaagtctta ttcaaaaaat tctcaaagac ttgcttaagc
     5101 atcacatacc aattaaagat atgcttacta ttttagaatc tgtaagtgat atagcagaag
     5161 taagcaagag ttttgatatg attattgaac atgtaagggc gtccttagct aggatgatta
     5221 caaatatgta tttagatgat aaaggaaatt tggatatttt tatcttagac tctgctagtt
     5281 ctgcggtttt aatggaaaat gtacaattta gagatggaag ttatcacttg cctttaagtg
     5341 tagctcaaac aggtacttta gtagatactc taagggctga agttgccgca gtagcaaatg
     5401 gtcgtatcaa gccttttata ctttgcgttg aaccgcagct tagaaaattc attgctgata
     5461 tttgttataa ttttagcatt aatatagtag tgttaagttt tgcagaaatt gcagaaaata
     5521 caaattttaa taccgagggt attattagga tagaacttta aggaatataa tgaaaattta
     5581 tcatctttca catacagatc ttgatggcta tgcttgtcaa tttatagtaa atttttattt
     5641 taaaaatgtg aaattttata attctaatta tggcaaagaa attaatgaaa attttaactc
     5701 tattataggc gatatagaaa aagatgaaaa tttcggaaaa gctattattc taataac
//
LOCUS       DAPIWU010000103         5747 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.104, whole genome shotgun sequence.
ACCESSION   DAPIWU010000103 DAPIWU010000000
VERSION     DAPIWU010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5747)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5747)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5747
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.104"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            63..1589
                     /locus_tag="RJ285_001533"
     CDS             63..1589
                     /locus_tag="RJ285_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDV7384272.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            complement(1597..2775)
                     /locus_tag="RJ285_001534"
     CDS             complement(1597..2775)
                     /locus_tag="RJ285_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDV7384273.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(2785..3681)
                     /locus_tag="RJ285_001535"
     CDS             complement(2785..3681)
                     /locus_tag="RJ285_001535"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDV7384274.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILVELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQSLLKQND"
     gene            complement(3678..5096)
                     /gene="gatB"
                     /locus_tag="RJ285_001536"
     CDS             complement(3678..5096)
                     /gene="gatB"
                     /locus_tag="RJ285_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HDV7384275.1"
                     /translation="MFEVVIGLEVHAQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHESNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKVRFIDKLGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            5211..5705
                     /gene="luxS"
                     /locus_tag="RJ285_001537"
     CDS             5211..5705
                     /gene="luxS"
                     /locus_tag="RJ285_001537"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDV7384276.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSIAK
                     AWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
                     LENA"
BASE COUNT         1921 a         1025 c          791 g         2010 t
ORIGIN      
        1 aaaaataaaa ttagcaaatt taaagtaaat aagtgtataa ttaaaataaa aaagggttat
       61 taatgcaaaa agacaacctc atagcttttg ttatttttat tatcagtact atcgcatttg
      121 ttatttgggg atttggttat atttcgcaac atcaactgat tctttttatt cttgcttcta
      181 tatttggtat ttttatggca tttaatatag gtggaaatga tgtagccaat tcttttggaa
      241 caagcgttgg cgcaaaaaca gtaaccatta aacaagcttt aattatagca gctgtttttg
      301 agctaagcgg ggcaatcttc gcaggcgcag aagttactaa aaccatacgc agcggtattg
      361 ttatttttcc aaattcttta gatcctatgc tttttgttat cattatgctt gctgcacttt
      421 taagctctgg ggtttggatt tttattgcaa ccaagaaagg cttacctgta tcaaccacac
      481 acagtatagt tggtgggatt gtaggtgcta gcattatgat ggggctttta aaatttgatg
      541 ggatccaaac actctctatg gttaaatgga gtgaaatttt aagaatagct atttcttggg
      601 tagcttcgcc tcttttaggg ggtattgtag cttatattat ttattcatat attgataaaa
      661 aaattttaaa accatcagaa aaactaaatg atgatttgaa aaatatcaaa aaagaaagaa
      721 aaaaattcaa agaagaatat tttttaaatt taaaaacaaa atcccaagaa gaacaaatca
      781 aagaactttc cgctatagct ttggatgaag aagaacaaga aaataatttc tatagaaata
      841 aaatgaagga atttaaggat caagaaaaag atatagatat ttactctatt ttaaaaactc
      901 atatgccaat cattgcttgt attgctgctg ctatcatttc ggcaatgttt ttatttaaag
      961 gtttaaataa tgttagcact ttggatattt tacaaaactt ttggattatc ggaattatag
     1021 gaactataag ttatgttgta acatttgcta tagtcaaaat cgttaaaaaa acagaactta
     1081 ataaaactac tgatagaatt ttctcatggt ttcaaatatt tacagcctct agttttgcat
     1141 tttcacacgg agccaatgat atagccaatg ctataggtcc ttttgcagcg attttagatg
     1201 tcttaaaaaa cggtacaatt aacgcgactt ctcctgtacc ttttgcagct ttagctatgt
     1261 ttggagttgc tctagttgta gggctttggt ttttaggtaa agaagtgatt actacagtgg
     1321 gttcaaaact tgcaaccata cgccctacta ctggattttc tgcagaactt ggtgcaagca
     1381 tagttatact cttagctaca caatttggaa ttcctgttag ctccacccat atactcatag
     1441 gtgctatatt gggtatagga gtgtataata aaaacgcaaa ttggattatg atgaagccta
     1501 taggattggc ttggattatc actttaccag ccgctggtat tatggcagca cttgtatttt
     1561 taggatttaa actatcttta ggaatttaag taaagcttat ttttctaaaa tattttttcc
     1621 tttaattata tgcattttaa tctttccaaa aagtttatcc tcagaataaa gagaactttt
     1681 tggagcaaaa atttcttcat tctcatcaaa aagaactaga ttagcttctt tgccaacttc
     1741 tataactcca ctatttaaac ctaaaaattc actaggattt ttacttgtaa atcgacaaag
     1801 ctcttgccaa tttaaaaatc cttctttgat taaaaaagta taacaaagac ttataaattc
     1861 gcatacgcta tgaattccaa aagccgcttc atcaaaagct aaatctttta aagaaattga
     1921 ttttgcacta tgcagggaag ttaaaaagct aatctttcct tcttttaaag cctctcttaa
     1981 agccaaaaca tcttctttgc ttcttaaagg tggcataagt ttcgcagccg tattaaaatc
     2041 ttcacaagca ctatcatctt tgataagatg atgaatgctt acaagtttta aatccttttc
     2101 atctaataat actaaagaat ctttcaaact taaaagatca aaaataactt tatttttata
     2161 aaatttagcc aattctttca ttttagctat ctggctagtt tcagcgattt tactcatgcc
     2221 tataagccct agctcaaaac tcatttcaca atcattcatc actccattat catcaaaatc
     2281 cttatcataa caacgcacaa aaattggaga gtctttcata aaagcatatt gtgaacttac
     2341 ttttaaagta tttgcatcta aagagctgtc aagttctaga gcacaagcac ctttatttaa
     2401 aagagtggct aaatttttaa gcttgccgtt tgcatcctta acccgcacac ttgaaaaaat
     2461 ttgcatcttt ctttgagcta aattttgtaa aaataaagca aaactttctt catcaaaatc
     2521 catgcaatca cgcaaaacta tactagaaat tcctcctttt agacactcat tttctaaaag
     2581 ctctaaatta gctaaagaaa atttatcgtt ttttaaactc acacacaaat ccacaaaaga
     2641 tggaagtaaa gtcatacctt tagcatctaa aatttcttcg ccttgtaaat tagaaccaat
     2701 attggtaatt tttccttctt taatctctat atcttgtaaa gaatctccat aaatttttgc
     2761 atttttaatt atcatgattt ttccttaatc attttgcttt aataaactct gcgttgcttc
     2821 ttgcacgctt ttacccttaa aaattgccac tacttcattt acaataggtg tataaattcc
     2881 tttcattttt gctagttttt ctatagcata agcagttttt acaccttctg ctacttcatt
     2941 aagttcgact aaaatactat ctaatttttg attttgcgcc agttttaaac ctactctata
     3001 atttcttgat aaaacactcg ttgcagttaa aaacaaatcc cctgccccac ttaaccctaa
     3061 aaaagtttct tctttagcac caaaaaattt accaaaacga tgcatttcta taagccctct
     3121 tgaaatcagt gccgctcttg cattattgcc aagttttaac ccatcactaa tcccacttgc
     3181 aattgctaaa acattcttat aagcaccaca aatttcagca ccacgaacat cattatcaat
     3241 ataagtttta ataaaatcag ggaaaaaact tgcaaatttt ttacaaagct cttgatttat
     3301 cccgctaatc atcaaagcag taggaagttt ttgcattact tcagcagcaa aagaaggacc
     3361 gcttaaaaca caaaaatttt cttttggtac aaaatctaaa aaaatttcat ctaaaaattg
     3421 acaactttga tcttctatac cttttgaagc aattaaaatt ttttgcccct tgttgatgaa
     3481 attttcttta agccaagcac gcatcccttg agaacttaaa gcaaaaacaa gatattcaca
     3541 ttctaaagct tcttttatgc taacaaaatc ttctaaatca cgctgatgca aagaactgat
     3601 aaaacaattg tgattttctt ttaaggctag atgtaaagca ctgccccatt ttcccgcacc
     3661 aataaccgct atacgcatca accaagcttt gtttttaaaa tttcatttac ttttgcagga
     3721 ttaaaagctc ctttgccttc tttcattgtt tgacccacaa aaaatccaaa aagcttgtct
     3781 ttaccacttt tatactctgc aaccttatcg gcatttgcat ttaaaatttg ttcaatcacc
     3841 gcttctatgg ctgaatcatc acttacttgc ttaagtccta gcttttctat agcttcatca
     3901 atttccacgc tagtattttc aaatacaaaa gctaagacat ctttagccgc ttttgcactg
     3961 atagtgccat cttctatgcg tttaattaaa actccaagct tttgagcatc tacaggagaa
     4021 ttttctatag tcaattctcc ttttaaaagt cccataagtt cagtatttaa ccaatttacg
     4081 caaagtttag gatttaaatt ttgagaaata agactttcaa aaaaacgact catttctaaa
     4141 gaactgatta aaacctctgc atcactttct tttataccaa gcttgtctat aaagcgtact
     4201 ttcttctcat caggaagctc agggatttta atatccaaaa actcatcttt taataaaaca
     4261 ggcaataaat caggatcagg aaaatagcga tattctgccg cttcttcttt gccacgcata
     4321 cttcttgtaa ctaaatttgt cgtatcaaaa agtctagttt cttgaactac ttcttgttcg
     4381 taagttccat cttcccaagc ctcactttgt ctttttacct catattctat agctttttgg
     4441 ataaaacgaa aagaattaag atttttaatc tctactctag tataaagttt tgtatcgccc
     4501 ttaggtctta tactaacatt tgcatcgcat ctaaaacttc cttcttgcat atttgcatct
     4561 gaaatgtcta aaaagcgtat aatagaatga agttttttaa gataagctac tgcctcatcg
     4621 ctacttctaa gctcaggctc actgacaatc tcaagcaaag gagttcctgc acgatttaaa
     4681 tctactttag aaaaattact ttcatggata tttttacctg catcttcttc caagtgcgct
     4741 cttgtaatac ctatgcgttt attttcaccc tttacattga taaaaagctc acccttttct
     4801 actataggga tatcaaattg tgaaatttga taagccttag gtaaatctgg ataaaaataa
     4861 ttcttacgat taaaaacact ttttttatta attgttgcat tgacagcttt tccaaaagct
     4921 atagcttttt ttacagcctc ttcatttaaa acaggcaaag ctcctggtaa ggccaaacaa
     4981 gtgggacaaa cattggtatt tggagcttct ccaaaagaag ttgcacatga gcaaaagatt
     5041 tttgtttttg tatttaactg agcatgaact tcaagaccta taactacttc aaacataaaa
     5101 tttccttgaa tttttaaatg ttttatttta tctttttttc ttttagaaag gctttaaata
     5161 ttaactttaa atgctataat tcttagacaa tttatattta aggagttaaa atgccattat
     5221 tagacagctt taaagttgac catactaaaa tgccagctcc tgctgtgcgt ttagctaaag
     5281 ttatgaaaac acctaagggt gatgatatta gcgtatttga tttgcgtttt tgcataccaa
     5341 ataaagacat tatgagcgaa aaaggtactc ataccttaga acatttattc gcaggattta
     5401 tgagagatca tcttaattca aattcagttg aaattattga tatttcacct atgggttgtc
     5461 gcacgggttt ttatatgagt ttaattggaa cacctgatga gaaaagtatt gcaaaagctt
     5521 gggaagcagc catgaaagat gttttaagcg taagcgatca aagcaaaatt cctgaactta
     5581 atatctacca atgcggaact tgcgcaatgc attctttaga tgaagccaaa caaattgccc
     5641 aaaaagtttt aaatctaggt attagcataa taaataacaa agaattaaaa ctcgagaatg
     5701 cttaaaaaga atctttattt tttaaatgat taagctttaa ttaatat
//
LOCUS       DAPIWU010000104         5680 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.105, whole genome shotgun sequence.
ACCESSION   DAPIWU010000104 DAPIWU010000000
VERSION     DAPIWU010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5680
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.105"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            10..126
                     /locus_tag="RJ285_001538"
     CDS             10..126
                     /locus_tag="RJ285_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384277.1"
                     /translation="MPMKKIILFLLCFGFAFACSEHSHTDFKDLNKTEYNSQ"
     gene            137..1141
                     /locus_tag="RJ285_001539"
     CDS             137..1141
                     /locus_tag="RJ285_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7384278.1"
                     /translation="MKKIFLMFLTAFSFLGASELNIYSARHYDADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEIGFR
                     "
     gene            1141..2757
                     /locus_tag="RJ285_001540"
     CDS             1141..2757
                     /locus_tag="RJ285_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDV7384279.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSNLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRMDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYSKIHLNIDEASLNLRASYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2741..3649
                     /locus_tag="RJ285_001541"
     CDS             2741..3649
                     /locus_tag="RJ285_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7384280.1"
                     /translation="MMLEIKNLSKNFEKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            3685..4890
                     /locus_tag="RJ285_001542"
     CDS             3685..4890
                     /locus_tag="RJ285_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HDV7384281.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     TFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDKFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKKIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(4918..5580)
                     /gene="sodB"
                     /locus_tag="RJ285_001543"
     CDS             complement(4918..5580)
                     /gene="sodB"
                     /locus_tag="RJ285_001543"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HDV7384282.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQVA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         1942 a          719 c          965 g         2054 t
ORIGIN      
        1 aaggaattaa tgcctatgaa aaaaataatt ttatttttac tgtgctttgg ctttgctttt
       61 gcttgctctg aacattctca taccgatttt aaagatctta ataaaaccga gtataattct
      121 caataaagga taaaatatga aaaaaatctt tcttatgttt ttaacggctt tttcattttt
      181 aggtgctagt gagcttaata tttactcagc aagacattat gatgctgatt ttgaaatcat
      241 aaaaaaattc gaagaaaaaa caggtattaa ggtcaatcat actcaagcta aagcttcaga
      301 acttattaaa agactttctc ttgaaggaag taattcccct gctgatattt tcatcacagc
      361 tgatatttca aatcttacag aagctaaaaa tttaggactt ttatcccctg tttcatcaaa
      421 atatttagaa gaatttatac ctgctcattt aagagataaa gataaagagt ggtttgcgat
      481 tacaaaaaga gcaagaatta ttgcttacaa caaaaacgca aatatcgata ttagcaaaat
      541 gaaaaattat gaagatttag caaaagctga atttaaagga gaaattgtta tgagaagtgc
      601 tacagctcct tatagcaaaa ctcttttagc atctattata gctaatgatg gaaataaaga
      661 ggctaaagca tgggctaaag gtgtgcttga aaatcttgcg acaaatccaa agggtggaga
      721 tagagatcaa gccagacaag tatttgcagg cgaagctaaa tttgcagtta tgaatactta
      781 ttatataggg cttttaaaga attctaaaaa tccaaaagat gtagaagtgg gcaattcttt
      841 gggtattatt tttcctaatc aagacaatag aggaacgcat attaacatta gcggtattgc
      901 tatgacaaaa tcaagtaaaa atcaagatgc ggctaaaaaa tttatggaat ttatgttaag
      961 tcctgaaatt caaaaaattc ttactgatag taattatgaa tttcctataa gaaatgatgt
     1021 agaattaagc caaacggtaa aagattttgg aactttcaaa gaagatcaaa tccctgtgag
     1081 taagatagca gaaaatatta aagaagcggt taaaatttac gatgaaatcg gttttagata
     1141 atgtataaaa ccttaaaata ctataaactc ggggcaattt tacttgccct ttttcttgct
     1201 ttgcctattt ttggtatttt tgctgaactt ttttatattt tatttcaaaa ttttaataca
     1261 agtaatttaa cccaattttc atctattaaa gaaaatttga gtcatttttt tgattattta
     1321 tttttaaaat tcatcaaaga tacttttata attagcgtgg gagtattgtg tttaagcttg
     1381 attttgggtg taagttctgc ttatttgatc gcaaattatg atttttattt ctgtaaaatt
     1441 ttagaaaaat tactcatttt acccttagcc atacctgctt atattttagc ctttgtttat
     1501 gtgggaatta tggattttca aggatttttt cacgaaaatt ttggctttag gatggatttt
     1561 ttcaatcatt atggtgttat ttttgttttg gctatttctt tatatcctta tatttattta
     1621 tttgctaaaa cagcttttaa aagtgaagct aaagaggctt atgaagtagc taaaatcatg
     1681 aaatattctg aatttagaat ttttacacgc gtggcacttt tgagtgcaag acctgccatt
     1741 ttttctggag ctttattggt tttaatggaa actttgagtg attatggtgc aagtgcttat
     1801 ttgggagtgg atactttttc ggctggaatt tttaaactct ggtatgattt gaatgattct
     1861 tattcttcta gtgttttatc gggtatttta atgctttttg tatttttgat tatgtatgtg
     1921 gattattatt ataaaaataa acatcattat agttttaatc aaaatttagc tctttttatc
     1981 aaaaaaagaa aattaaatcc tattaaacaa attctatcct gtatttattg ttttatgatt
     2041 gcttttgtag gttttatttt accttttatt tggctagttt attgggggct aaaagatcat
     2101 aagctttttg aatcgcaatt ttatattatc agttttcaaa ctataatctt agctttaatc
     2161 actgctttaa ttaccacttt tttagcttat tttttgatgt ttagctctag gatagttaaa
     2221 aatcattttt ttaatttatt tattttaaaa ataagttctt tgggttattc tatacctgct
     2281 gctgctttag ggattagcat tatagtgctt tttgtatttt tggataaatt ttttcacatg
     2341 agtttattgg gaaattcttt acttgttctt gtttttgctt atataattcg ttttttagcg
     2401 agtgcaattt attctttaga aggaggatat agtaaaattc atctaaatat tgatgaggcg
     2461 agtttaaatt taagagcgag ttattttatt ttatttttta aaattcacac acctttaatg
     2521 aaacattttt tatttttggc ttttattatt gtttttattg atacgattaa agaacttcct
     2581 ttaagtagaa ttttagcgcc ttttggcttt gaaactttaa gtgttaaagc tttctggttt
     2641 gcaagtgatg aaagaattta tgatgcagct ttgccttcct tgtttatcgt ttttctttct
     2701 ttaatggttg ttgtttggat ggataaaatc acaaggaaag atgatgttag aaattaaaaa
     2761 tttatctaaa aattttgaaa aaatacaagc tttagaaaat atcaatcttc atgtcaaaga
     2821 aggagaattt ttaagcattt taggaggtag tggaagtgga aaaagcacgc ttttaaggat
     2881 tattgctaag cttgaacaag ctagttctta tgatttgttt tcttgcaaag gtgaagtggc
     2941 tttgatgttt caaaattatg ctttatttcc tcatttaaat gttgagaaaa acatactttt
     3001 tgcactttac gataaaaaag ataaaaatca aattttaaat catttgctta aaacttttga
     3061 aattgaagat ttaagatata aaaaaatcga tgaaatttca ggagggcaag cgcaaagagt
     3121 ggcttttgct agagctatag caagaggatg tcagcttttg cttttagatg aacctttttc
     3181 taatttggat caaaatttaa aacaggattt aagaagagaa ttgaaaaaaa tgatagaaaa
     3241 tcaaggcatt acggctatta tggtaactca tgatattgaa gatgcttatt gtatgtctga
     3301 tcaaatcgct tttttagaaa aaggaaaaat tttagctcat gcaaatccta aagagcttta
     3361 ttttaagccc gattttaaaa gtgcgcaaat tttacctgat ttaaatatca tagaagaaaa
     3421 acttgattta gaagatgaat tttttgcttg gatagcttca aaaaattata tttttggtta
     3481 tgcagaactt aaaataggaa atcgctttga ggctaaaatt ttacaaaaag aatttttagg
     3541 ggctttttat agacttaagt taagatataa aaatatagaa ttttttatgt tattaagctc
     3601 aaattataac ttagaagaaa aaataaattt tgatattatc aatttttagt taaaattcct
     3661 aaaaatcttt taaggacaaa tttcatgaaa aatcttttaa tcataggcgc aggtggagta
     3721 agtcgtgtgg ctactgtaaa atgcgcaatg aattctgata cttttagcaa aatcacttta
     3781 gctagtagaa caaaaagcaa atgtgatgaa atcgctactt ttatcaaaga gcgtttaggg
     3841 gttcaaattg aaacagcgca aattgatgct gatgatagca atgcggttgt agaacttatc
     3901 aagaaaacag gagcgcaaat tttactcaat gttgctttgc cttatcaaga tttgagttta
     3961 atggatgctt gtataaaagc agggattgat tatatagata cggcaaatta tgaacatcct
     4021 gatttagcta aatttgaata caaagagcaa tgggcgagaa atgataagtt taaacaagca
     4081 ggaattttag gacttttagg aagtggattt gatcctggtg taactaatgt tttttgtgct
     4141 tatgcacagc aaaatttatt tgatgaaatt tcttatatag atattttaga ttgcaatgca
     4201 ggtgatcatg gctatgcttt tgcgacgaat tttaaccctg aaatcaatct gcgtgaggtt
     4261 tctgctaaag ggcgttattg ggaaaatggc aagtggatag aaacgcagcc tatggaaata
     4321 aaaatggagt gggattatcc agaagtagga gtgaaagata gctatttgct ttatcatgaa
     4381 gaacttgaaa gcttggtaaa aaatatcaaa ggtttaaaaa aaatacgctt ttttatgact
     4441 tttggacaaa gttatttaac tcacatgaaa tgtcttgaaa atgttggaat gctagggatt
     4501 aaacctgtga tacaccaagg taaagaaatc attcctatag aatttttaaa aaccttgctt
     4561 cctgatcctg caagtttagg accacgcact aaaggttata ccaatatagg ttgtgtgatt
     4621 cgtggtaaaa aagatggaaa agacaaacaa gtttatattt ataatgtttg caatcatgaa
     4681 gaatgttaca aagaaactgg cgcgcaagct gtgagctata ctacaggtgt tcctgctatg
     4741 ataggtacga aattaatcgc taaaggaatt tggcaaggaa aaggcgtgtt taatatggaa
     4801 gaatttgacg ctaagccttt tatggaagag ctgaattctc aaggacttcc ttggaagatt
     4861 atcgaaatga ctccaagctt aggagagtaa aaaaggcatc gttttgatgc ctttaaatta
     4921 ttttacaggg tgaagttcat ttgcataaaa gctaactgat cccatgcctt cttttaaagc
     4981 ccattcgtaa gcttttgcaa caaattccca gttaatatga gcatagaatt tttctaaata
     5041 agcagggcgt gcattacgat gatctacata ataagcatgt tcccaaacat ctacaacaag
     5101 taaaggaact ttatcttcag taattggtgt agctgcgttt gaagtaccta caaattctag
     5161 tttttgattt ttagtattat aaactaacca aaaccatcct gaaccaaaaa ctcctgtagc
     5221 acctttgatg aattcagctt tgaaattttc taaagatcca aattcttttt ctagtgccac
     5281 ttgtaaatta gcatctatac tttgacatga accgccacag ccacagcctg tacttggctt
     5341 aatgcaatca aaataaaaat catgattata aacttgagct gcgttattaa atacgccccc
     5401 atttgaagtt ttgataatac ttacaagatc tttacctgca aattcagtat ctttaataag
     5461 attatttaga tttgtaacat aagtattgtg atgttttcca tgatgatagc taaaagtttc
     5521 agcactcaaa aaatcaccaa aagcattggt atcataaggt aattttctta attcaaacat
     5581 aatttctcct ttatttttag tttgatattg aaaatattac cataataata ttaaaaagag
     5641 taaaaatatc ttaaaagctt agtgggtaaa atttctattt
//
LOCUS       DAPIWU010000105         5602 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.106, whole genome shotgun sequence.
ACCESSION   DAPIWU010000105 DAPIWU010000000
VERSION     DAPIWU010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5602
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.106"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(186..2438)
                     /gene="flgL"
                     /locus_tag="RJ285_001544"
     CDS             complement(186..2438)
                     /gene="flgL"
                     /locus_tag="RJ285_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HDV7384283.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            2620..2706
                     /locus_tag="RJ285_001545"
     tRNA            2620..2706
                     /locus_tag="RJ285_001545"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2654..2656,aa:Leu,seq:caa)
     gene            2717..2791
                     /locus_tag="RJ285_001546"
     tRNA            2717..2791
                     /locus_tag="RJ285_001546"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2749..2751,aa:Gly,seq:gcc)
     gene            complement(2822..4753)
                     /locus_tag="RJ285_001547"
     CDS             complement(2822..4753)
                     /locus_tag="RJ285_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDV7384284.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFAKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(4757..>5602)
                     /locus_tag="RJ285_001548"
     CDS             complement(4757..>5602)
                     /locus_tag="RJ285_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7384285.1"
                     /translation="VFILMLLLGRRIEKNFNKILDFLDSIGDHKVVILEKGMFKEFNL
                     LNEKLLKTKDKILKNTQKNKKQSDKITLKNTQLASVISAISHELKNPLSVIDLSLEML
                     KDEKLEDKKLKKELLEKISRQSVKLNALTHKLNFVFNLNSEALQMQEFDLFSLCEKIT
                     KNPGFERVALQGKSTKVKADEFLIEQVIINLLSNALKYSQKKVILTARDQKIIVQDFG
                     KGIEEDKIKLITKKFYKIDVKSDNSFGLGLFLVKKILNIHKSYLEISSTLGYGSSFSF
                     KLSQG"
BASE COUNT         1720 a          973 c          742 g         2167 t
ORIGIN      
        1 gataataata cccaaattct ccaaataaaa ataaattagc cttgtaaacc cattctccca
       61 tgccaggtgc tagcatacaa agacaaagat aaaaaataac aagcgtggag ctggtaaaaa
      121 tggcttcttt tttaatattc tttccttgaa aataaaatca aagccaaatt ataccataaa
      181 aaattttaca tataatttaa taagctaagt tgagaaattg ttgtactagc tttaagagaa
      241 gcttgatatg caagttgaac ttgcattaaa ttcatcattg cctcaccata atctacatca
      301 atcacatttg attttatact ttggacatta acgcttaaaa atgatgtgcg tgtattaaca
      361 ccttcgatag tattatgata tgctcccata gttgtattaa gcttgctaac atgatctgct
      421 aaatgatcaa gtctttctaa agctccttgc atacctgtat ttctagggtt ttcactttcg
      481 gagtctgctc tcatattgcc ttttaaaaca gcatcaatca ttgaatctaa atctttaata
      541 atatccacat ttggctcatc tatagttaaa gaattattcg cgctaaaact aaaatttgga
      601 ccattttgta cagtagaagt tgtggtaaaa ggaggtgctg gaaattggcc actttgagaa
      661 tcactaagag aaatttctat attggttcct gatgaaagtt tatcagtaac actaatacga
      721 cctttataat ccatacttac atcaacagta gcttgtgaat ctttcatgag ttgttgtatt
      781 tgggtataat ctgcattatt aatttgacca ttattggctt gtatggttgt tgtaggaatt
      841 ttatctgcag caaacatacc tataatatca ttaatttgac cataagtaat atcatttgat
      901 cctgtaacaa ccccactatt tccagttgca ggattagtat gcataatagg aaagcttatg
      961 gtttgacctg gattattagg atcaggatag cttacagttg aagtttgtaa atttatagta
     1021 acatcgtaag aatttccacc tttggaattg acttttaaat ttaaagtagt accatttagg
     1081 ctatctcctg ccattacctc gctaagtttg gttgaatcag tggcataagc attgcttcct
     1141 ttgataactt gagaaacatt accataaaca gtattgccat ttttttcaaa atacacatta
     1201 tcgtaatcag ctccattagc agcatttcca tctgtatctg tcattttact tttgataaaa
     1261 tcagtttgtt ttaaatcaat ttcaaagttt tgtccgttaa tttgaatggt tacaggatta
     1321 tttaaatttg taatatctcc attattggga tttcctagtg cagcagtcat aaccctgttt
     1381 gtaacatctt ccattgtaat gccttcatcc tgtgctgctt ggataatatt atttaattca
     1441 gttttatcat cagcttgtgg tgtgaaagct acagcatgaa aatcgagttt attattacct
     1501 tgctttagat ctgtaatttg aatttgacca ctatcattca tacttacttc tactacttta
     1561 ttatttggag tattaccata aagagctcca atattttcca ttacatcttc taaagtatct
     1621 tcgggtttga cgagtacagc acttttaaaa cttgttccat cgggtcttgt accttgaaca
     1681 taaagagttg ttggaggaaa atctagtttg ctatcatcat actcaaagtc tttgtcagca
     1741 tctaagctat tatcttttac ataaccttgt ccgataagtt gttgccattt agaatctcct
     1801 gtgagatatt tagttttatc agggtcttta tttaaatccc aacgattatc tgtaaaacta
     1861 acattagtgc ttatttgttt tttatagtct ccatctgctt taaaaaataa atcccaacct
     1921 ggtatattgt atgggctttc agttccagct ccagttacta cattaatatt atttttatct
     1981 ccataataat ttccattaga atcaaaaggt ttgtttgcaa cttgagaacc tgcaaaaaga
     2041 tactgaccat taacactggt atttgcaagc tgaactatgc tttcttttat acgttctagt
     2101 tcttttgcta tagcttctct tgaggtttga gaattgctat cgcttgcagc ttgggttact
     2161 ttaactttaa aatcttcaag aagtttaacc atatcttgta aagctttcat actattttga
     2221 gtcatttctt gagctctact tgttgattct tttacttgtt ctaatgtttt aatttcatat
     2281 tcaagacgcg tattatctat ataagtgctt gcatcttcat atgaattttg tattttcaaa
     2341 cctgaagcaa gttgttgaga tatctgatat aaagcacttt gaccgcccat agaattattc
     2401 acactatttg tgaagttaag tttatttgta attctcattt ttttcctcta aagtattaaa
     2461 gttaaaatct tttcaaacat tgctaataaa caaaagcaat aactgttcca aaaatttaaa
     2521 ttatataatt ttatattgtc tttttgaaaa tactttttat ttttaaagta ttttttagcc
     2581 taaaaaagta taattttagc tttaaatctt ataaaatgag cccgagtggt gaaactggta
     2641 gacgcgccag actcaaaatc tggtaagggc aaccttgtgt cggttcgagt ccgacctcgg
     2701 gcaccactta ttttttgcgg gaatagctca ggggtagagc acaaccttgc caaggttggg
     2761 gtcgcgagtt cgaatctcgt ttcccgctcc atagagtaaa aaaaatataa aatctcttta
     2821 attataaatt ctcgcttttc tctaatacta aaaaatactc attttctaga atttcaagtt
     2881 ctttttgcat tacttcaagc tcttgataaa gcttgttaat acctatttct tgatatacat
     2941 ttggatcgga taaatcttga tttaatttag ctatcttttg ctctaaaaaa tctatttttt
     3001 caggatggtt ttttaatatc tcattttctt tgtagctcaa ttttttggag cttttttctt
     3061 tttggttatt attttgctct tgggtttgaa gctctaaagc aaaattatcc aattcttcaa
     3121 tttctttttc attttcaaga tattcagtat aaagagtgtg taaaatattt atatatccat
     3181 ttccctcaaa agcataaagt tttgttgcga ttttatcaac aaaatatcta tcgtgtgata
     3241 ctagcaaaat agccccttca aaactaagta agtattcttc taatatatta atcgtagcta
     3301 tatcaagatc attagttggc tcatctaaaa tcaaaacatc atattcttta gcaaaaagca
     3361 aggctaaagc aacgcgattt ttctctccgc cgcttaaaag agccacgctt ttatctaaaa
     3421 attccttagg aaatagaaaa tttttcaaat atccataaac atgcatattt ttaccacgaa
     3481 cttcaaccct atctccacca ttgggacaaa aaatttcaag caagctttta tcagaattta
     3541 ccaagcttct agcctgatca aaatatccta tcttaagctc tccgcgtttt atttcaccgc
     3601 tatcttgttt tatttgccct agaagaattt ttaacaatgt tgattttcca caaccatttc
     3661 ttcctacgat agctatgcgt tcaccttgta aaatacgcgt tgaaaaatct ttaaaaagat
     3721 ttttattgtt tatatttttg cttatatttt taagctcaaa aagcattttt ttacgattga
     3781 tcgttttttc tccattaaaa tttaaagccg ctcttgaaat ttcaagtttt aagcgtttga
     3841 ttgccccagg attttttttc gcttcttcac gcattttaaa aatgcgttct tttcgtcctt
     3901 catttctttt aagtcttgct ttaacccctc ttctaagcca ttcttcttcg ctttttaatt
     3961 gctttaaaag agtttcatgg ctcttagcaa ggctttgcaa aatttgtgtt tttttctcta
     4021 aatagtttgc atatccgcct ttaaaaatac taagcttacc ctgctctact tctacacact
     4081 tgtgtgctat agcgtcaata aaatatctat catgggaaat aaaaatcaca cacatctttg
     4141 aattttttag caattcttcc aaaaagcttg tcatatatac atctaaatga ttagttggtt
     4201 catcaagcaa taaaatatca ggatttttta gtaaaagtat gcaaagccca acgcggcgta
     4261 tttctccacc acttaaagta gatataatgc gattttcata ctcaagtaaa ctaaattctt
     4321 ttaaaacgcg tattatttta gattctatac tccaagcatc tttactatca atcaaagtca
     4381 taagcgtatc tattttttga agataatctt tattactagg atcttcttct aattttttat
     4441 gcagtatttc atattcttct aaggtattgt aaatttctac aagctcttgc ttgatggctt
     4501 cttttacgct taaatttgca ttaaaatcaa cggtttgtga aagcatggct atgctttttc
     4561 cattttgtct tattattcta ccgctatcta aaggaagtgt gcctaaaagc gtttttaaaa
     4621 aagtagattt tccttctcca tttttgccta taatagcaat cttttctccc tcgtttgcgc
     4681 taaaatttac ttcatttaaa actattttgt ctccaaattt ttttgaagct tcaattaaat
     4741 ctataagagc cattttttat ccttgactga gtttaaagct aaaactagaa ccataaccta
     4801 aagtgctaga aatttcaaga taacttttat gtatatttaa aattttcttt actaaaaaaa
     4861 gtcccaaacc aaaagaatta tcacttttta catcaatttt ataaaatttt tttgtaatca
     4921 attttatttt atcttcttct atgccttttc caaaatcttg cactattatc ttttgatctc
     4981 ttgccgttaa aatgactttt ttttgactat attttaaagc attagaaagc aaatttataa
     5041 tcacttgctc gattaaaaat tcatcagcct taactttcgt gcttttacct tgcaatgcaa
     5101 ctctttcaaa gcctgggttt ttagtgattt tttcacatag agaaaaaaga tcgaattctt
     5161 gcatctgcaa ggcttcacta ttaagattaa aaacaaaatt aagcttatgg gttaaagcat
     5221 taagtttaac gctttgacgt gaaatttttt ctagtaattc cttttttaat tttttatctt
     5281 ccaatttctc atcttttagc atctctaagc taagatcaat cacgcttaat ggatttttaa
     5341 gctcatgaga aatagcagaa atcacgctag caagctgagt attttttaaa gtgattttat
     5401 cgctttgttt tttatttttt tgggtattct ttagaatttt atccttagtt tttaaaagtt
     5461 tctcatttag taaattaaat tctttaaaca ttcctttttc taatataaca actttatgat
     5521 cccctataga atccaaaaaa tccaaaattt tattaaaatt tttctctatt cttctaccta
     5581 acaacaacat taaaataaaa ac
//
LOCUS       DAPIWU010000106         5318 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.107, whole genome shotgun sequence.
ACCESSION   DAPIWU010000106 DAPIWU010000000
VERSION     DAPIWU010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5318
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.107"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..1233
                     /locus_tag="RJ285_001549"
     CDS             <1..1233
                     /locus_tag="RJ285_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HDV7384286.1"
                     /translation="NFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELSFSEFKA
                     KYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKAYLIYEK
                     NSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKAKEYLLS
                     GDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPEFLLKIK
                     KREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKFGTQTRV
                     ENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALEITSELE
                     DCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQKEYAEIC
                     AKRKALLVAFENLKKENQ"
     gene            1230..2831
                     /gene="trpD"
                     /locus_tag="RJ285_001550"
     CDS             1230..2831
                     /gene="trpD"
                     /locus_tag="RJ285_001550"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDV7384287.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQLAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEVRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            2818..3417
                     /locus_tag="RJ285_001551"
     CDS             2818..3417
                     /locus_tag="RJ285_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HDV7384288.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFALAGGIGLDN
                     IHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            3414..4592
                     /gene="trpB"
                     /locus_tag="RJ285_001552"
     CDS             3414..4592
                     /gene="trpB"
                     /locus_tag="RJ285_001552"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDV7384289.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            4585..>5318
                     /locus_tag="RJ285_001553"
     CDS             4585..>5318
                     /locus_tag="RJ285_001553"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDV7384290.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSETFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGMDIHSVFKLLARIKIKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIE"
BASE COUNT         1873 a          593 c         1047 g         1805 t
ORIGIN      
        1 aatttttatt atagacaaat ccttgaaaaa tttgaaaatt cttattttgc agaggatttg
       61 actaaggtaa ttatagggat tgattgtgat tatttagatg ctaatgaatt atcctttagc
      121 gagtttaagg caaaatatta tgaagcttta agcaagaata aaatttgcga ctttgctgga
      181 ttttttggag tttttagtgc aaattttgta tctttgtttg aaaaaattcc actttcttct
      241 aagaaaaatt atgattttcc tttattttta tttgccaatg ctaaggctta tttgatttat
      301 gagaaaaata gcaagatgtt ttttaaattt ggtgcttcaa aatattttga atatttaaaa
      361 gatgatattg aaccaatgaa aaagaaacaa aaaaatgatt ttgaaatttt aaattcttta
      421 gaagatgaaa aaaatgattt tttaaaaatg tgcgaaaaag ccaaagaata tcttttaagt
      481 ggagatattt ttcaagtggt cttaagtaag caactttgta tcaaacatca agtaaatgct
      541 tttgattatt atgagagttt aagtgcttta aatccaagcg cttatatgtt ttattttcca
      601 agtaaatatg gtgttgtttt gggttcttct ccagagtttt tattgaaaat taaaaaaaga
      661 gagatttatt tagcccctat tgctggaact agaaatttgg aaaataactg tgatctttta
      721 gctttagaaa aagatctttt aagtgatgaa aaagaactta gtgaacataa gatgcttgta
      781 gatttagcaa gaaatgatgc ttctaaattt ggcactcaaa caagagtgga aaatcttttt
      841 tctattatta aaaataaatt tgtaatgcac atagtgagtg aagtgtatgc caatatgaaa
      901 gaagatgcga gtatttttga tgtgattgaa gcagtttttc cagcgggaac tttaagcgga
      961 gctcctaaaa taagagcttt agagatcact agcgagcttg aagattgcga tcgtggaatt
     1021 tatggtggtg cggtaggatt tttaaatttt aacgaagaca taactttagc gattttaatc
     1081 cgttgcgctt tttttactca agataaggct tatttggcaa gtggggcggg tattgttttg
     1141 caaagtgaga gtcaaaaaga atatgcagaa atttgtgcta aacgcaaggc gcttttggta
     1201 gcttttgaaa atttaaaaaa ggaaaatcaa tgatactttt aattgataat tatgattctt
     1261 ttgtttttaa tgttaaaagc atgttagagc aactcagcaa tgatgaaatt ttagtaagaa
     1321 gaaatgatgc aatttctctg agtgaaatta aaaatttaaa tcctactcat attattttaa
     1381 gtcctggtcc aaagcatcca agtcaaagtg ggatttgtct tgaaattttt aaagcaaggc
     1441 ttaatatccc tgttttgggc atttgcttag ggcatcaagc tttagcttta gcttttgatt
     1501 ctttagtggt taagatgcaa gagcctatgc atgcaaaaaa ttctttgata aaacagtgca
     1561 gggaaaatga attattttct aatttgcctt caaattttag tgtaatgcgt tatcattctt
     1621 tagaggttaa acagcttagt gatgagcttg aaattttagc ccttgatgaa aagggtgtga
     1681 ttatggcttt gggacataaa aatttacctt attatggtgt gcaatttcat cctgaaagct
     1741 attttagtga atatggctta caactttttt ctaatttttt aaaacaagat ataaaaaaac
     1801 cacaaaaaca agaaaatcct ttaagttttt atttgcaaaa aatgagtgaa aatcattttt
     1861 tacaaagcga tgattttgag caaatttgta agattattat gtctaaagat tatgaaattt
     1921 tacaattagc ggctttgttg attttaatca ctgaaaagtc tttaaacgaa aaatctttaa
     1981 gtgcttttgt aagacaaatt ttaagatatt ctcaaacttt tagtgatgag agtgagatga
     2041 ttgatatttg tggaacaggt ggagatggtt ttaaaagtat caatgtttct acgactagtg
     2101 cttttatttt agcagcttta ggagtaaaag tagccaaaca cggaaatcgt gccatttcaa
     2161 gttctagcgg aagtacagat gtgttagaag ctttaaatat aactactcca aacactttag
     2221 aatcagtttt aaaacaacta aataatcaag ggcttagttt tttacatgct ccattttttc
     2281 atcctttggt aggagaactt aaagaggtca gatcaagact tggagtaaga acggttttta
     2341 atgttttagg tcctttattg caccctaatt taaagttaaa atatcaactt atgggaaatt
     2401 atcacgcacc tgtgcatagg cttttgatag aggttttaaa aaatttagga cgcaaaaaag
     2461 ctttagtggt aagaggaaat gatggtatgg atgagcttag tatttgcgat gaaagtaaaa
     2521 tttatgagct ttgtgaagga gaaattttag agtattctat ctgtcctgaa caatttggtt
     2581 ttaaaagagc ttttcatagt gaaatcatag gatctagtgc atatgacaac gctaaagatt
     2641 taaaagatat tttaagcggt agaatgcaag gggcaaaatt tgatttggta gttttaaatg
     2701 ctatgtttgc actttataca gccaataaag caagttcgcc tttagtggct aaagatatga
     2761 ttttagaagc catttattca ggtaaggtta tagaatattt taaggagtat caagcttatg
     2821 ctaaagctta aaatttgtgg tattaaagat gaaaaaaatg ccaaagattt agctttttta
     2881 aatattgatt tttttggact tatttttgct aaaagtccaa gaagagtgag tttagaacaa
     2941 gcaagaaatt taagtgcaat ttttcatgaa aaagataaaa aagttgtcgg tgtttttgta
     3001 gatgaaaatt tggaacaaat tttaagatgt attaaagaag ctaagcttga tgggatacaa
     3061 atttatcgca ctattaccaa agaagaattt gaaattttaa aggtgcaaaa tgtttttgtt
     3121 tggcaggtga ttagtgtgga aaatagttta gatttaaaaa gtgaaatttt tgctaattta
     3181 gtactttttg atgctaaggg aattttaaag ggcggtaatg gaataagttt tgattggact
     3241 ttattaggtt cttatactaa agattttgca ttagctggag gcataggttt ggataatatt
     3301 cataaggctg tacaaacggg agctaaaatt ttagatctta attcaaaact tgaagatgaa
     3361 aaaggcttaa aagatatcaa caaaataaaa caaattttaa aggagttgaa aaaatgaaaa
     3421 aagcgtatta tggggatttt ggtgggcagt ttttgcctga aagtgcaatg tttgctttaa
     3481 atgagctaga aggtgctttt ttgaaatttt ctaaagataa actctttaaa aaagaattaa
     3541 acgagctttt aaaaacttat gtagggcgtc ctactccact ttattttgct agaaatttaa
     3601 gcaaaaaata tcagcatgaa atttatttaa aacgcgagga tttaaatcat accggagcac
     3661 ataaaatcaa taatgccatc gctcaagccc ttttagcaaa aaaaatggga aagaaaaaaa
     3721 tcatagcaga aacaggagca ggtcaacacg ggcttgcaac agccactgca gcagcacttt
     3781 taggacttga atgtgaaatt tatatggggg caaccgatgt gcaaagacag gctttaaatg
     3841 tttataaaat ggagcttttg ggtgctaaaa ttcatgcagt acaaagtggg cttaaaactc
     3901 taaaagaagc tactactgcg gctattcaag cttgggttgg agatattaaa aatatttttt
     3961 atgtggttgg aagtgcggta ggtccttatc cttatcctaa aatggtaatg cattttcaaa
     4021 gtattatagg aaaagaatgc aaaatgcaac ttcaaaaact caataaaaaa gtagattata
     4081 ttatcgcagc tgttgggggt ggaagcaatg cagctgggat tttttatgat tttatcaaag
     4141 atgaaaatgt taaacttata ggtattgaag caggggggct tggcattgat acgccttatc
     4201 atgcagcgac tttaaataag ggaaaaacag gcattattca cggtatgaaa accaaggttt
     4261 tacaagatga tttaggcaat atcttgcctg tacatagtgt ttctgcaggg cttgattatc
     4321 caggaattgg tcctttgcat gcttttttat ttgaaagcaa aagagcgcaa tatcatgcta
     4381 taagtgatga agaatgtatg caggctttaa aattactttg taaagaagaa ggtattattg
     4441 cagcgattga aagttcgcat gctttggcat ttttagaaaa actttgtcca actttaaaaa
     4501 agaaaagcgt gatagtagta aatctttcag gcaggggaga taaagatatg caaatgatta
     4561 gagattataa aaaaggggtg atttatggtt gattttagaa aattttataa agaaaatgca
     4621 aatgtggctt atacggtttt aggttatcca aatcttcaaa caagtgaaac ttttttgcaa
     4681 agattggatc aaagccctat tgatatttta gaacttggtg ttgcttatag tgatcctatt
     4741 gccgatggtg agattattgc agatgcggca aaaatagctc ttgatcaagg catggatatt
     4801 catagtgttt ttaagctttt agctaggata aaaattaaaa aagctttggt ttttatggtt
     4861 tattataatt taattttttc ttatggcttg gaaaaatttg tgaaaaaagc aaaatcttta
     4921 gggatttgtg ctttgattgt gcctgaattg agttttgaag aaagtgatga tttaattaaa
     4981 gagtgtgaaa gatataatat agctttaatt acacttgtaa gtgttacaac ccctaaagaa
     5041 agggttaaaa agttagtaaa acatgctaaa ggttttattt atttattagc aagcataggt
     5101 attacaggta cgaaaagtgt cgaagaagca atcttacaag ataaagtaaa agaaatcaga
     5161 tcttttacaa atttgcctat ttttgtaggc tttggcattc aaaataatca agatgtaaaa
     5221 agaatgagaa aagttgctga cggagtgatt gtgggaacta gcatagtaaa gtgttttaaa
     5281 caaggaaatt tggatataat aatgaaagat attgaaga
//
LOCUS       DAPIWU010000107         5184 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.108, whole genome shotgun sequence.
ACCESSION   DAPIWU010000107 DAPIWU010000000
VERSION     DAPIWU010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5184
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.108"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..127)
                     /locus_tag="RJ285_001554"
     CDS             complement(<1..127)
                     /locus_tag="RJ285_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlfA"
                     /protein_id="HDV7384291.1"
                     /translation="MDNMKEFKIFCDESNHLFYKDNPTLCSKVMVLGALKVPSSEI"
     gene            complement(132..2195)
                     /locus_tag="RJ285_001555"
     CDS             complement(132..2195)
                     /locus_tag="RJ285_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDV7384292.1"
                     /translation="MIEEILKDSDYKLDLFSKKAIAELETKIIAKTNKNNQIIYYTNC
                     LIRDKEIKLTPEEIVRQLYIDKLLNEYNYPKDMIKIEFGVHFGREVKRADIVIIDKIQ
                     ITVPYIIIEVKKPKLKDSKEQLKSYCNATGATMAVWCNGKEISYYHRKDPNYFESIPN
                     IPASNQTLPDLLKVKITFDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECF
                     KLIFIKLFDELEGARDRTKSLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKI
                     KLSPSHLSVCVSSLQNVKLFNSNLEVIDDAFEYLVNKSSKGEKGQYFTPRYVIDMCVK
                     MLNPKKDESMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVK
                     EKVFGIDFDEKSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEG
                     FKRLKNLRVTKNQNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGRD
                     ILFIERNLDMLKPGGRMAIVLPQGRFNNSSDKYIREFIAQKARILAVVGLHGNVFKPH
                     TGTKTSVLFLQKWDDKLCPKCEDYNIFFATMNEPSKDNSGEKIYYPLLDSHDHLVVKH
                     DLFHPHLEGDEPIKQKDESQEEFDKRIQEYRLNVEKYKDLQKDGIAEAFIEFAKAENL
                     SFWKE"
     gene            complement(2205..3302)
                     /gene="dapE"
                     /locus_tag="RJ285_001556"
     CDS             complement(2205..3302)
                     /gene="dapE"
                     /locus_tag="RJ285_001556"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDV7384293.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSSDAFVPMEKEGFIYARGAQDMKSGVA
                     AFVDAAKNVDFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(3306..3905)
                     /locus_tag="RJ285_001557"
     CDS             complement(3306..3905)
                     /locus_tag="RJ285_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HDV7384294.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSYVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            complement(3898..4599)
                     /locus_tag="RJ285_001558"
     CDS             complement(3898..4599)
                     /locus_tag="RJ285_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDV7384295.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKFTDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLHQTSLFISIGTSGAVLPVGQYASMCEKSILNIYEKDVNLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(4642..>5184)
                     /locus_tag="RJ285_001559"
     CDS             complement(4642..>5184)
                     /locus_tag="RJ285_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDV7384296.1"
                     /translation="FLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPVYSAN
                     VLEVFGFVNKEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDTKINA
                     KYISFILNEAGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQIADITDKIEKKINEYK
                     IELDRLEKEKEKILQKYLFS"
BASE COUNT         1670 a         1034 c          587 g         1893 t
ORIGIN      
        1 taatttcaga tgatggaact ttaagcgctc ctaataccat aacctttgaa cacaaagttg
       61 gattatcttt gtaaaataaa tgattgcttt catcgcaaaa aattttaaat tctttcatat
      121 tatccattca cttattcttt ccaaaaactc aaattttctg cttttgcaaa ttcaataaaa
      181 gcttcagcta tgccatcttt ttgcaagtct ttatattttt ctacatttaa tctatattct
      241 tgtattcttt tgtcaaactc ttcttggctt tcatcttttt gttttatagg ctcatctcct
      301 tctaaatgcg gatgaaataa atcatgtttt actactaaat gatcatgaga atctaaaagt
      361 gggtaataaa tcttttcgcc tgaattatct ttactaggct cattcatagt agcaaagaag
      421 atattatagt cctcacactt tggacataat ttatcatccc atttttgtaa aaataaaaca
      481 cttgtttttg tccccgtgtg tggtttaaag acatttccat gaagtcctac aaccgctaag
      541 attctagctt tttgtgcgat aaattctctt atatatttat cgcttgaatt attaaaacgc
      601 ccttgtggca atacaatagc cattctacca ccaggcttta acatatctaa atttcgttcg
      661 ataaataaaa tatctcttcc taccttactt tgaggtttgc cattttcttt tttgcctagc
      721 tcatatctag ctaaaattct actctctttt atatctcctg caaaaggcgg atttgccatt
      781 aaaacatcaa aattaaaatc cctattttga tttttagtta ctcttaaatt ttttaagcgt
      841 ttaaaacctt caaaatacac atcttgccaa tcttcatcat cttttaccca ctcatcccat
      901 ctatcaaagt caatggaatt taaatacaaa acatttgtat gcccatcacc tgcaattaga
      961 ttaagcattt ttgatacgcg cacactcttt tcatcaaaat ctataccaaa cactttttct
     1021 tttacataat cttgacactc agaaatcttt tcttgggctg taaagagatg acttgcttct
     1081 atgcctcttt ctttataaat tgaacgccac acataaaaac aagtatgtat cggaaatcca
     1141 caacttccac ttgcagtatc tatcatactt tcatcttttt tgggatttag catttttaca
     1201 cacatatcta ttacataacg cggagtaaaa tattgccctt tttcaccttt tgaggattta
     1261 ttcactagat attcaaaagc atcatcaatc acttctaaat ttgagttaaa taactttaca
     1321 ttttgcaatg atgatacaca tacacttagg tgcgaaggag aaagtttaat tttctcatca
     1381 ttattaaata caccttccca ttttttcttt gctttatcaa agagtttttc tattttttgc
     1441 ttaagttcag aatcagactc tccataattt ctaaactcta agctctttgt tctatctctt
     1501 gcaccctcta gctcatcaaa aagttttata aatataagct taaaacattc ttcaaataca
     1561 tcaactccag catttgccaa cacctcatct tccatttctg taactaaatt ctttaaactt
     1621 cgcttttgac tttttaaaat atcttcttta atcaaatcat caaaggtaat ttttactttc
     1681 aacagatccg gtaatgtctg gtttgatgca ggaatatttg gaatagattc aaaataattt
     1741 ggatcttttc tatgataata gctaatttct ttaccattac accacacagc catagttgca
     1801 cctgtagcat tacaataact ttttaattgt tctttgctat ctttcaactt tggctttttt
     1861 acttctataa tgatgtatgg gactgtgatt tggattttat caattatcac aatatcagcc
     1921 ctttttactt cgcgtccaaa atgcacacca aattcaattt ttatcatatc tttaggatag
     1981 ttatattcat ttaaaagctt atcgatataa agctgacgca caatttcttc tggcgtaagt
     2041 ttaatttctt tatcgcggat aaggcaatta gtatagtata taatttggtt atttttgttt
     2101 gttttagcta taattttagt ttccaattca gcaatagctt ttttactaaa tagatctagc
     2161 ttgtaatcac tatcttttaa aatttcctca atcatcctaa acctttaaaa attttctatc
     2221 aagtctttaa aaacaaggca aagtttttca aattcttcta tgcttactct ttcatcaata
     2281 gcgtgaattc tatcattaca aaccccaaat tccactactt ttacaccata ttttgcaaaa
     2341 taccttgcat cacttgtgcc gcctttagta ttaagctctg gcacttcatg agtgattttt
     2401 tgaacgcttt cattcatttt ttgaacgatt ttattatcga tatttgtcaa aaaagcttcg
     2461 cttgattgtt ttagctctaa ctcatagttt aaaccatgac aaattttttc tacataactt
     2521 tttacatctt ctaagcttgt atcaggggaa ttgcgaacat taaacataag ttttaaatca
     2581 tttggcgtaa cattacacac ccccatacct ccgcgaatat cggtaataac aatttttgaa
     2641 ggactaaatt cagcactacc tggatcgaga tcaaaacccg ctaaaagctt taaaactggt
     2701 gcaaaatcat gcacaggatt gatacatttt tcaggataag caacatgccc ttgttttcca
     2761 cggattaaaa gttttccatt gatagaacca cgacgcccta ttttaatact atcgccgatt
     2821 tttttaacac aggttggctc ggcaaccaca gcataatcag gtaacatatc tctttcttgc
     2881 atccattcta aaacagcctt agttccatat atagcttcac cttcttcatc acttgttaaa
     2941 ataagactca gtcttgctcc tttaaaatct acattctttg ccgcatctac aaaggctgct
     3001 actccgcttt tcatatcttg agcacccctt gcatagataa agccttcttt ttccataggc
     3061 acgaaagcat cgctactcca accctcgcct gcaggcacca catctacatg cccaccaaaa
     3121 gctaaatgct cgccttcatc tttaaatttt ttagtgagta aaaggttttt aatgccttct
     3181 ttttctatga aaaaagcttc aaaatcactc agttccatag cgatgaaatt taaagctcca
     3241 tcatcatttg gcgtaacaga tttaaatttt aaaagttcga ttaaaaattc ttttgcattc
     3301 attttttatc ctaagaaagt tttatataat aaattaagag caaaatactc tataattata
     3361 gctgaaatta tattgattat aaaaacaact tttgcactaa aaacataact atatcttgcc
     3421 accacaaagg ctaaagcact tacccaaaaa agtatagcca caacaagtcc taaagtcatc
     3481 aaataagcat gatcgctgct taaaaccaca cttgcagcac taagccaaaa tcctatcaca
     3541 aaaggatttg aaccatttaa aaaagctcct ttaatataac ttttcaaaag actttcttta
     3601 aattctttat gctctaaatt taagctttct ttcttttttc ttagcatcaa atacgccata
     3661 taagttaaaa aacaaaaacc aaaaatcgcc aaaaaacgca taaaaatgac attgtctaag
     3721 aaatttaaaa gcccaaattg aagcaaaaaa agataaagca tatctatact aaatgctcca
     3781 agtcctacag ctatggaatt tttaaaagct tttagtgcat aagttaaaat caaaatattt
     3841 acaggtccaa aaggcacact cactccaaag cccaaaaaaa ctccacttaa aaaagaatca
     3901 aacattacca tctttcataa aattttctat atcaagtgcg attttatcaa tagcgcttat
     3961 aatatcttct atatagattt tatcaaaata tcgctctaaa ttcacatctt tttcataaat
     4021 atttaaaata cttttttcac acattgaagc atactgcccc acaggcaaaa ccgccccact
     4081 tgtgcctatg ctaataaata atgaagtttg atgaagtaaa gaataaagcg tagcataagc
     4141 aggagcttgc tcttcaaaca tgactatatt gtgtcttaaa tccttacttt tgcattttgg
     4201 gcattgttta tctgtgaatt tttcatagcc tatattaaaa attccttcac attttaggca
     4261 acgaagttcg ggcaaaaagc catgcaaatg tactacatct ttacaccctg cacgctctag
     4321 caaatcatct acattttgcg tgatgacaaa aaggttttta ccccattttt cttttaactg
     4381 tgcgattttt tcatgggcgt gatttggctt tacattttga agttgtgccc ttcttgcatc
     4441 gtaaaaatca agtacttttt taggattttt tctaaaacct gttgcagagc aaacctccat
     4501 cacatcgtat tcttcccaaa gtccatcatt atctctaaaa gttttaagcc cacttggagc
     4561 agacaaaccc gctccgctta atatcataat gtttttcatc gctaaacctt ataaaattta
     4621 caaagtttag cgaaaaatgc tttaagaaaa taaatatttt tgcaagattt tttctttttc
     4681 tttttctaat ctatcaagtt ctattttata ttcattgatt tttttctcaa tcttgtcagt
     4741 tatatctgct atttgatctt gaaattctaa agaaggaagt ttaactctta atgcttttat
     4801 tctatctatt gaagctctaa gttttcttga aaatccttgt tttttaccag cttcatttaa
     4861 aataaaactt atgtatttag catttatttt tgtatcatca acccttaata ccccacaatg
     4921 atcagttgga taaaactttt tattttttgg tataaatccc accatccaat ctccatctat
     4981 accccacaaa acagaatcat tatcataatc ttgcaaaatt tctttattaa caaatccaaa
     5041 tacttccaac acatttgcac tataaacagg aatttgtcca ttttcaagca gctcattatt
     5101 taaaactctt tttccaatac ttagtttaaa aattggattt gataaagcat attctttaat
     5161 tgttttatta aatgatgata aaaa
//
LOCUS       DAPIWU010000108         5032 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.109, whole genome shotgun sequence.
ACCESSION   DAPIWU010000108 DAPIWU010000000
VERSION     DAPIWU010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5032
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.109"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(166..669)
                     /gene="ctf"
                     /locus_tag="RJ285_001560"
     CDS             complement(166..669)
                     /gene="ctf"
                     /locus_tag="RJ285_001560"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HDV7384297.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            849..1844
                     /locus_tag="RJ285_001561"
     CDS             849..1844
                     /locus_tag="RJ285_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDV7384298.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVKDRKILNDELVKAGKVF"
     gene            1854..2768
                     /gene="pstC"
                     /locus_tag="RJ285_001562"
     CDS             1854..2768
                     /gene="pstC"
                     /locus_tag="RJ285_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDV7384299.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            2765..3853
                     /gene="pstA"
                     /locus_tag="RJ285_001563"
     CDS             2765..3853
                     /gene="pstA"
                     /locus_tag="RJ285_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDV7384300.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            3850..4590
                     /locus_tag="RJ285_001564"
     CDS             3850..4590
                     /locus_tag="RJ285_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HDV7384301.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDDEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            4652..>5032
                     /locus_tag="RJ285_001565"
     CDS             4652..>5032
                     /locus_tag="RJ285_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7384302.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PGGAEDMNSYIYIDDYLTRNYKVAVININYHCIGNRPHLGSSFYLDDIDKFILDTSLK
                     AINLKCINVYGINSYENLNNAFIRI"
BASE COUNT         1703 a          670 c          910 g         1749 t
ORIGIN      
        1 ataaataata taagagaaaa ttaaaattaa aatattttgt attttgtaat catttttaaa
       61 agtccaataa atagcaaaaa aagctatcat taaaatacta aattctagag aaaaataagt
      121 cataccttca atccaaagcg agatttgccc atagtagggc aaagattatt tttttctgct
      181 taatgcaata tttttgatgt attgatcagc taaataaagt ccatttccgt gttctccgat
      241 taacttaatc ttgtcaacta taccgcggaa aagtgcttct tcttcgtgtt gttcgcttac
      301 ataccactgt aagaaattaa aagtagaata gtctttatgt gttagcatgt gttcaactaa
      361 agtattgatt gactttgtga taaattgctc atgttcatag gttttttcaa aaacatcaag
      421 taaagatttg aaattttgtt caggctgttt tacttcttga agctctacat gagaatctgt
      481 ttcattaaga taagtgataa gctttttagc atgatcgctt tcttcgcttg catgtgcaaa
      541 caagaaggct ccagctccat caagactgtt ttcatagcac caagaactca tactaagata
      601 taagtttgcc gcatacattt ctttgtttat ttgttcattg agtaatttta caacttcttt
      661 agaaagcatt cttatctcct tattaaaatt taaaatgttt tataatgata tattattttt
      721 ttaaaaacaa gctaaatttt ttgatagtta aaaattatat ttaagaaaaa tacaaaataa
      781 aaaatgtttc caaaatgttt ccaagttttt ttaaacttcc attacttttt taaagttaag
      841 gagaaaaaat gaaaaaaatt ctatctttaa gtgtggcaag tcttgcactt tgtggtgctt
      901 taaatgcagc agatttaaaa atcgcaggtt catcgactgt gtatcctttt acttcttttg
      961 tagctgaaga atatgcttcg atcaaaaata caaaaactcc tatagtagag agcttgggaa
     1021 cagggggtgg atttaaggta ttttgtgaag gaactactga tatttctaat gcttcaagac
     1081 ctatgaaatt aagcgaattt gaaacttgca aaaaagcagg ggtaactgat atagtaggga
     1141 tgatgatagg ttatgatggt atagttttag ctcaaaataa aaccaatgct ccattaaata
     1201 tcacaaaaaa agaacttttc ttagcattag caaaagaaat tccacaaaat ggaaaactta
     1261 taccaaatcc ttatacaaac tggaatcaaa tcaataaaaa tttaccaaat cgtaaaatta
     1321 gtgtttatgg tccaccatca agttcaggaa caagagatac tatagaagag cttgtaatga
     1381 gtgatgtgtc taaaaaaatt cctgagtata aaggcgagta taaaaccata cgccaagatg
     1441 gtgcttatat cccaagtggt gaaaatgata atctaatcgt ttccaaactt actattgata
     1501 aggatgcttt tggaattttt ggttatagct ttttagtgag caattcagac aaaatcaatg
     1561 ctgctaatat cgatggtgtt acgccaagcg aagaaagcat cgcagatgaa aaatacgaac
     1621 ttgcaagaag tttgtttatt tatatcaatg ctaagaaaaa tccaaaagaa gcctttgatt
     1681 ttgcaaaaat ttatatgagt gatgatttgg caaaaagtgg tggagagctt gaaaaaatag
     1741 gacttgttcc tttgagtgat gataaattaa aagcttctca aaaacacgta aaagatagaa
     1801 aaattttaaa tgatgagctt gtaaaagctg gaaaagtttt ttaaggaaaa actttgttaa
     1861 aagaaaaaat aatcaaattt gcactttttt tatgtgcttt tgtaagcgtg atagtaagtt
     1921 ttgctatcat gcttacaatt ttaattgaag ctttaaaatt ctttcaaaaa gaaagcgttg
     1981 ttaccttttt attctcaagt cagtgggcag ctgatgcagc ttttatgaat gcagatggca
     2041 cgagtaaaca aggtgttttt ggggcgctat cgcttttttg gggaactttt tatatttcat
     2101 tgattgctat gctaacggct ttacctttag gggttatgtg tgctatatat ttaggtgttt
     2161 ttgctggcaa aaaatctaaa aattacttaa aacctatttt agaaatcatt gcagggattc
     2221 ctactgttgt ttttggattt tttgcggcta tagttgtagc gccttttata gtgtggtttt
     2281 tttctttatt tggcatacaa gcaagctttc aaagtgcttt aggcgcaggt tttatcatgg
     2341 ggatcatgat agtacctata gtggcttctt tatctcaaga ttgcattgaa gcagtaagcg
     2401 agaaaaggat taatggcgct tatgctttag gtatgacaaa aaaagaagtg gtttttgccg
     2461 tgattttacc tgaggctatt cctggtatag ttgcagcttg tcttttagga ctttcaagag
     2521 ccttaggcga aactatgata gtggtgatgg cagcttcttt gcgtccaaat ttaactttaa
     2581 attttttaga agatatgaca acggtaacgg taaaaatcgt agaagcttta agtggagatc
     2641 aagcttttga tagttctttg gctttaagtg ctttttcttt aggtttggtg ctttttgtca
     2701 tcactttaat catcaatatg tttagcgttt atcttatcaa tcgctttcac aaaaggaaaa
     2761 atttatgaaa aaacttttta aaaaaagaca aaaagcttca aagtctttta aaagactttg
     2821 taaaatgggg ctttatatta atttaatttt tctttgtatc tttttaggaa gtgtggctta
     2881 tcttggattt cctgctttta agcaaactta tatttttgta gaggctaata gaaattctcc
     2941 tgcttatgat cttttatctc gcgcagaaca aagaaaaata agaacaggac aaatcactga
     3001 aaaatcttgg cttttggcaa attcagaagt agatcaatat atgaagcaaa aatataatcg
     3061 ccttagtgaa aaacaaagaa ctttagtcga tgatcttgtg caaaaaggcg agatagagct
     3121 taaatttaat agcaatttct ttttaaatgg ggactcaaaa tctcctgaaa attcaggaat
     3181 tttatcttca gttgtaggga ctttgcttgt tatgcttgtt tgtatggttg tgagtgttcc
     3241 tataggcgtt gcagcggcaa tttacttaga agaatttgca ccacaaaata tccttacaca
     3301 ttttatagaa gtgtgtatta acaaccttgc aagtattcct agtatcttgt ttggactttt
     3361 aggacttgga gtgtttatca atctttttgg aatgcctcgt tcaagtgctt tagtgggtgg
     3421 gcttactttg gcgatcatga gtttgcctat tatcattgtt tcaaccaaag cggccttaaa
     3481 aagtgtggat atcaatatga aaaatgctgc ttatgcctta ggtatgacaa aggttcaaat
     3541 ggtaaaaggt attatgttac ctttggctat gcctatgatt ttaacaggtt ctattttgac
     3601 tttagcaggg gctataggag agactgcacc tttgatgatt attggtatga tagcatttat
     3661 ccctgatgta gcaagttcga tttttgatcc aactagcgtt ttacctgctc aaatttactc
     3721 atggtcggct atgccagagc gtgcattttt agaaagaacc gcagcgggta ttattgtgct
     3781 tttaggactt ttagtcgtgt taaatcttag tgcgatatta ttaagaaaat attttcaagg
     3841 aaaattaaag tgatagcaaa aacaacaaat ttaaatttat tttatggaaa aaaacaagct
     3901 ttgtttgata tcaatatgca aatagaacaa aacaaaatta ccgcactcat cggtgcttca
     3961 ggatgtggta aatccacttt tttgcgttgt tttaacagaa tgaatgataa aatcgcaaaa
     4021 atcgatggtt tagtagaaat tgaaggaaaa gatgttaaaa atcaagatgt agtagcctta
     4081 cgcaaaaatg taggcatggt ttttcaacaa cctaatgttt ttgtaaaaag catttatgaa
     4141 aatatctctt atgcaccaaa gcttcatggt atgattaaaa acaaagatga tgaagaagct
     4201 ttagtggtgg attgcttaca aaaagtaggg ctttttgaag aggttaaaga taaattaaag
     4261 caaaatgccc tagctctttc aggcggacaa caacaacgcc tttgtatcgc aagagctttg
     4321 gcgataaaac ctaagctttt acttttagat gagccaactt ccgcacttga tcctattagc
     4381 tcaggtgtta tagaagagct tttaaaagaa ttaagccata atctttctat gatcatggtt
     4441 acgcataata tgcaacaagg caaacgcgta gctgattata cagcattttt tcatcttgga
     4501 gagcttatag aatttggtga aagtaaagaa ttttttgaaa atccaaaaca agaaaaaacc
     4561 aaggcttatt taagcggtgc ttttggataa gatttatttt ttggaaattt gatgatataa
     4621 ttaattaaaa atttccaaaa aaaggtttaa tatgattata aaccaaattt attctataga
     4681 ttcttgtgat gatgtagaat taaatatcaa aaggggaagt aaattagaat ttagattgac
     4741 ttatgatgat agtaaagaaa tagaagctat tgtttgtatt attccaggtg gtgctgaaga
     4801 tatgaatagt tatatttata ttgatgatta tttgactaga aattataaag ttgctgttat
     4861 taatattaac tatcattgta taggaaatag acctcatttg ggttctagtt tttatttgga
     4921 tgatatagat aaattcattt tagatactag tttaaaggct ataaatttaa aatgtataaa
     4981 tgtttatggt ataaattctt atgaaaatct aaataatgct tttataagaa ta
//
LOCUS       DAPIWU010000109         5013 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.110, whole genome shotgun sequence.
ACCESSION   DAPIWU010000109 DAPIWU010000000
VERSION     DAPIWU010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5013
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.110"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            279..1267
                     /locus_tag="RJ285_001566"
                     /pseudo
     CDS             279..1267
                     /locus_tag="RJ285_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(1302..1943)
                     /locus_tag="RJ285_001567"
     CDS             complement(1302..1943)
                     /locus_tag="RJ285_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HDV7384303.1"
                     /translation="MRKFFCKFVLTLVFCSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSYKLADVYFVSYFLNKQRNFSNLNEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(2027..3450)
                     /locus_tag="RJ285_001568"
                     /pseudo
     CDS             complement(2027..3450)
                     /locus_tag="RJ285_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(3486..4286)
                     /gene="dsbI"
                     /locus_tag="RJ285_001569"
     CDS             complement(3486..4286)
                     /gene="dsbI"
                     /locus_tag="RJ285_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HDV7384304.1"
                     /translation="MSYIKMKDNCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKSNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            complement(4283..4945)
                     /locus_tag="RJ285_001570"
     CDS             complement(4283..4945)
                     /locus_tag="RJ285_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HDV7384305.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYHCTHCYDHHKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFATFK
                     DGVNKIDPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADFE
                     NFLKTPETAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAINSPEALIEITKELSK
                     QK"
BASE COUNT         1748 a          839 c          709 g         1717 t
ORIGIN      
        1 tcttgccttc caagattttg aaaaacgcag ttgtctaagt cttttttttc ttgaatgctt
       61 aaatttttca ttaacctaac ctttaaaaat attgcaagat tttattatag cgaaaaaact
      121 ttatttttgc tttaaatata taagttctat tttaaatata aacgaatatt attttaaggt
      181 ttaaagcttt tttcttaaaa tgtaattagg ttttattgac tttttctaaa taaagtctta
      241 taccgaattt aaattacgca aaataaggag ggaaattgat gaataaattt tctatagttt
      301 taactttgtt gttatgtgga agttgtgctt tagccttaga tccaaatttg gaaaaaacta
      361 agagtgcaac aggtattgat ctgcctactg ccaaatggaa tttacctaag gaattaaatg
      421 aagatggcac tatagatgaa actaaaatgc caaaaaattc agaatatagc aaaatggtta
      481 ttttgggaaa taaaattctt aatgaaacaa gcaaatatgt gggtccacaa gccaaagatc
      541 ctaaaaaaag atttgcggga aataatcttt cttgttcaag ctgtcatgct aatggtggaa
      601 gtgtgcaaaa tcaatcgggt tttgtaggaa tttgggcaag atttccacaa tataatgcaa
      661 gaggagataa agtaattacc ttagcagata ggatcaatgg ctgttttgaa cgctctatga
      721 atggcaaaag aatgccttag tgatacacct gaaatgaaag ccatgctaac ttatatgcaa
      781 tggttatctc aaggagttcc agtaggagct aagatagaag gatagggact taagaagata
      841 gatttcatct taagagcagc tgatcctaaa aaaaggtaag gcaatttata tggataaatg
      901 tgccgtttgt catcaagaaa atggcttagg gcttaaaaat gaggatagca caggggcgta
      961 ttatctttat ccaccacttt ggggtgatga tagttataat acaggagctg gaatgtatcg
     1021 tcttatcaaa gctgcttctt atattaaaga aaatatgcct caaggtgcgc ctgacttaag
     1081 tcttgaagat gcttatgatg tagcagctta catgaattca caagctcgtc ctattaaagc
     1141 aaatagaaat aaagactttc cagatagaaa ggttaagcct ttagatatgg atgtaggacc
     1201 ttatgatgat agcttttcta caacccaaca tcgctatgga ccttatacaa atatgatcaa
     1261 aaaataattt ttaaggcaat ttttattgcc ttaaaaattt attatttcat attacttaat
     1321 tttttaacta gatcttctaa atcttgcatc gaattgattg cacttgggtt aatttgatat
     1381 tttccattaa caacaaaagc aggggtgcca taggttttag ctatatcatt agctctttga
     1441 aactcgctta aaatttcttt agcttttggg gtatttaaaa aatttaatac ttcattttta
     1501 tttacattca tagcctttaa acctatgtcg taaaattcat ttaaatttga aaaatttctt
     1561 tgcttgttta aaaaataaga aacaaaataa acatcagcaa gtttataaga taaactatca
     1621 gaataactcg cgtctttacc attttgctca tctttgtatt gagcaaaggc aaaaagctca
     1681 ttcatttctt tggaaaattc cccattcatt aaacttacag gatagagttt aaaatgtaaa
     1741 tttggaaaag cttctctcag tttttcaagg gttccaaatt tatgatgatt ataacaatgt
     1801 atacatttat aagaaaatgc ttctattaca ctattttcag agctaggtaa acttggatta
     1861 agagtaataa aactattatt tgctaatgca aaacttgaac aaaatacaag cgttaaaaca
     1921 aatttgcaaa aaaatttacg catattatat ccttggttaa ataaaatttt caaagataat
     1981 tttatttaaa aaaaataaat aaacccaaaa ataaatttgg gcttatttat tttttaggat
     2041 tgaatgcttg atcaacacta aaaggcattg cttgataacc cgtgcctgaa ccgctgaatt
     2101 gaatttgaac cgaaggctcc ttagcgcccc agttaaattc atcaatttta ggttttggtt
     2161 ctccaagact tacaccttta ctaagattaa aagccattcc agcgttgcac tataaaccat
     2221 aatagaatct ttatctggtt catattgagt taaagaagtt acaggataaa accattcatt
     2281 gccattttta tctacaggtt gcaataaata tttttgaaat tctttattcc accctttata
     2341 tgcgcccaat tcctacctat acctgctata tctccaaatt tgtcgctttc atccattttg
     2401 gcaagctctt catcgcttaa agttttaccc actttacttg catctatatt taaacacact
     2461 gcactttgat ctaaagtttt gataatagta cttctataag gatctaaaat cttatacaat
     2521 ctccaatcat caacaacatt accatcctca tctacttcta taatagtatc acacactgtg
     2581 cgtacatgct tactatcttg gacgcaaagt atttgttgaa gaaataatgc ccattttttg
     2641 catattgtcc atagcatgag aaaaaatcta tatagacagc aggtaatttg cgattgaaaa
     2701 tttctcttcc cagacatcgt attttacata tctttgacca aatccccaag ttaaagctcc
     2761 atctttgtta tcataattcc acgattgtaa atattacccc agttcattag tttattgtta
     2821 tcataatacc atctgatttc acccttggta tcttataata aagacatttg aattttcatc
     2881 ccattccata gcaccaccta caagattatt ccatacagat tatgagtctt tgccagatta
     2941 ttttccagga gcattattta ctaaatatag cctatctgaa aattttggat ccatttttaa
     3001 tactttcaca ttttcaaaaa gagttcctct ttgatcagtg ccttccgctt ggttctatgc
     3061 tagcccatgg agttgtaatt ttataaatct catcaatgac tttttgactt ttaccatttg
     3121 cggttttagt ataacttacc tttactataa gaaggataaa gtccaaaaat aggaattcca
     3181 ccatacgtct tagccatttt agaattcaca ttattaagaa atagtttgac catttgattt
     3241 ttttatatcg cttaagacat aaccattatt catgataata gcggtcaaag gagacaatcc
     3301 ataaggattc attttaatca tacccatttg tccttgaatt tgccaatcta ttttcactcc
     3361 actaggacca cccatggcca ttaaagcatt aggtgcaagt agggtagaac ccgccaaaat
     3421 tgccatgcaa agagttttgc taagtctcat gatcaatcct ttaaaattat ttaagacatc
     3481 ctattttaag agtatcttaa aacgacttga tttaaactag ctatattttg attcggattt
     3541 tttgattcgc ctataaattt aagcaccaaa accaaagcaa caatcaccaa tgcaaaaatt
     3601 ttagcattag atttattttt atctaaaaca taggctataa acattgcaaa aagcacgaca
     3661 aaacaacata aaaatgctat aagacagcaa attgccatat tcataaactt taaactagga
     3721 atcaaatacc aaccattact ataaagccca ttttcaaaat caggtggagt tcctataaaa
     3781 aatttttgaa aagcattaag atgattataa gcattttctg gaactacagg ggtatccatc
     3841 ccgcattctc ctgttggcaa aaaccaacta ggagcccatt tatacaaagg taaattaaat
     3901 ggataaatag gaatttcacg acatccatct acgcctgcaa aaggattttc agaatgaacc
     3961 acttcatgga tatgatttaa agttagacaa tgctccaagc caagccaaat tccataaaaa
     4021 gctaagctat aagaaaaaat ttttataata ttatttgcag ggttgattaa tgcaatcata
     4081 ccacctatag ccataacaag catatcaaat cttatataca cacattgttc acaaggtttc
     4141 ataaaaagat attcttgaaa taaaaaatgt gctatacaag taagtcctat agtaactata
     4201 atcaaaatca accaaggttt gcgcgtatct tgccatttgg aaagtgaaaa atttctgcaa
     4261 ttatctttca tttttatata actcattttt gcttgctaag ttctttagta atttcaatca
     4321 aagcctctgg agagttgatt gcacttggaa cgatttgata ttttccatta acaacaaaag
     4381 caggggtgcc ataattttgc gaaataggat tggcaatttc ataacttttt aaaagctctg
     4441 cagtctctgg agtttttaag aaattttcaa aatcagcttt acttacattc attgctttta
     4501 aaccgacact ataaaaagct tcaggatttt taccattttc ccatctttgt tttttcttaa
     4561 aatatgcatt aaaataagct tcagcaactt tatgagttaa gctattttta tccgtaggat
     4621 caattttatt tacaccatcc ttaaatgtcg caaaagcaaa aatttcatta gcttgccttc
     4681 cataatctcc catagaactt acaggataaa atttataagt taaattaggt aatttttctt
     4741 taactttacc catggtatta aatttgtgat gatcataaca atgagtacag tgataagaaa
     4801 aaatttcaat caatgaatta tcagcgttag caataggatt tttaagaatt acatattctt
     4861 taccttcact taatgcgcta gcacttatac ctgctaaaaa agcacataca acaatagatc
     4921 ttgctaattt tactggaaat ttcattaccc tctccttgaa atttggtttt gataaaactt
     4981 tttattaagt ttttatgtaa taactattat aaa
//
LOCUS       DAPIWU010000110         4989 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.111, whole genome shotgun sequence.
ACCESSION   DAPIWU010000110 DAPIWU010000000
VERSION     DAPIWU010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4989
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.111"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(20..529)
                     /locus_tag="RJ285_001571"
     CDS             complement(20..529)
                     /locus_tag="RJ285_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HDV7384306.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            complement(529..1059)
                     /locus_tag="RJ285_001572"
     CDS             complement(529..1059)
                     /locus_tag="RJ285_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HDV7384307.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQFQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(1071..2159)
                     /locus_tag="RJ285_001573"
     CDS             complement(1071..2159)
                     /locus_tag="RJ285_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HDV7384308.1"
                     /translation="MPADLNDYFNKKNRNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(2171..3085)
                     /gene="ilvE"
                     /locus_tag="RJ285_001574"
     CDS             complement(2171..3085)
                     /gene="ilvE"
                     /locus_tag="RJ285_001574"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HDV7384309.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQNTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     PVTKKLQDAYFNVVYGRNEKYASMLTYI"
     gene            3260..3466
                     /locus_tag="RJ285_001575"
     CDS             3260..3466
                     /locus_tag="RJ285_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HDV7384310.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITKLLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKAIK"
     gene            3463..3918
                     /gene="bcp"
                     /locus_tag="RJ285_001576"
     CDS             3463..3918
                     /gene="bcp"
                     /locus_tag="RJ285_001576"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDV7384311.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDETGKIVQIYSNVRVKDHALKVLESL"
     gene            3918..>4989
                     /locus_tag="RJ285_001577"
     CDS             3918..>4989
                     /locus_tag="RJ285_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDV7384312.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECELYRVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQ"
BASE COUNT         1697 a          683 c          816 g         1793 t
ORIGIN      
        1 ttaaaactat ttaacaatat caaatacatt ttaaggtgtg ataaaattca ggattattaa
       61 aagttggagg aaaaggaacg ctagctctaa attctttata ggtattaccc gggagtgtgt
      121 ctatgatttc tatagtataa gaaacacttg tattttgcat tttagcgtta cggatatttt
      181 tatcattgaa aatttcacct cctacttgtt gttggtttaa tatgctaagt atcaaatagc
      241 attttttgat ttcaaattta gtaagatttt gaacttttcc acttactata acgctttcat
      301 gtcttagatc tcttgtgtag gttagtttgc taagatcggc ttgagtggtg aattgattga
      361 ttgtcagaaa aatagaatat atcaaaagtg cggtaaaaat agtagctatg gtataagaaa
      421 tcaaagccat ttctttttgt ttgactttta gaaagattaa aatacaaatc aaggcaaagc
      481 aaataagtaa aatgataaaa gctataatat gaaaaatcgt aaaatgcatt aaaaacactc
      541 cgaaactaag cgtatggtat agttattttc atagttaaaa ttttcaaaag caattctttg
      601 aaattgggtt gcgtttttct ttagatcttt aatttctcta cttttttgtc taaaagggat
      661 aaatttcttt ttatattctt ctatgatatt atcattaggt attttatctg caaaaatttt
      721 agctgtaatt ttacattctt taaaattatt ttttgaatta tttgtaatgt taaaatcaac
      781 aattaaatca tttgagcttt gtatcatttt ttgatctgta atagcgattt ttcgagttct
      841 tacttcattg tctattagtt tatacccata gatataaact aaaaaacaaa taataatatc
      901 aaatgcaata ataaaaagtg ctgctatagg tctatggcgt aaaaatacgc aaagaagtaa
      961 aacacaagtg aagagaaaaa aaactaataa aatcagcata taatctacta aatataaatg
     1021 agtagtgtaa aaaagcacga tttctcttag tttctccact tgcgtatcct ttagttcatg
     1081 ttggcagcac tttgcttttt agcatcttta gtatcaaccc aaatgtttgg cactgctcca
     1141 cctggagtta agaaaatttt agcatcttga ttgactttta aggcttcatt aaattctttt
     1201 tgagtttcaa tttgttttaa atttagcaaa ggggtgttta agctgtttgc gatttcttta
     1261 ttagaataag cttgtgcatc tgcttctatc ttaacagcca tagctttacc tttggcgctg
     1321 attatggttg catttgcttc cccttcagct aaagcagctt tttttaaggc ttcttgatta
     1381 gctctttcta cttcatattt agttctttca gcctcttgtt ttgcaatttg cacgcgttcg
     1441 atttgttctt ttacttttga aggtaaaata atttctctaa gttgtacagc gcgaagttct
     1501 acaggttcat ttggttgggc ttctatggtt tttcttatac cttcttctat ttgagcggct
     1561 attgtattac gattagtagg aagttcttcg gctgtatatt ttcctacaac acttcgcact
     1621 acatcacgaa caactggatc gataatttta ttttcccaat ttaagctcca agtagctata
     1681 gtttgaggaa cttgcagagg atttaagcgg tattgtactg taacatcaat agatacaggc
     1741 aatccacgag agtcaagtac agaaatgcta tttttattaa taacacctga acctgaagat
     1801 aaattttcat tacttccctc tatagaagca tagttgattt gtcttactct agtatcgatt
     1861 atggttattt tttgtacaaa aggtaagaaa aagtgaagtc ctggttctaa tggatttggg
     1921 tcatatttac ctgttgttga tttaatcccc atttccccag aatttatcac cataaaaggt
     1981 tttgcaacga ttaaaaataa gataataata atcaccccat aaacaaatgg agagaatttc
     2041 ccaaaacctt taaaattaaa ttctggtgct ttgaaattga aattttgacg gttgttgttt
     2101 ccgttattgt tagaatttct atttttttta ttgaaataat catttaaatc agctggcatt
     2161 tatttccttt ttaaatataa gttagcatag atgcgtattt ttcattgcgt ccataaacta
     2221 cattaaaata agcatcttga agttttttgg ttacaggtcc tcttaaacca tttcctatta
     2281 ttcttgcatc aatattgtta ataggtgtga tttcagcggc tgttccggta aaaaatgctt
     2341 catcagcagt ataaacttca tctcttgaaa ttctttggcg aagcacagtg ataccaagat
     2401 catgagctat tttaagcact gtattttgag taatgctttt taaagaaaaa tcatttggag
     2461 gtgtgattaa aaccccgtct tttacaataa agaaacattc tcctgttcct tctgcgataa
     2521 aaccttcttc atcaagcatt aaagcttctt catagcctgc ttcaatagct tcaaattttg
     2581 caatttgaga gttaagataa tttgcacttg ctttagcttt tcccatgcat gatttaacac
     2641 tatttcttgc aaaagacgaa atttttactt ttatgccttt ttctaaacct tcttctccaa
     2701 ggtaagcacc ccattcccaa gctgcaattc caactcttac aggagctttt atatgataaa
     2761 gtcccataac tccatcgcct aagaaaatca aagggcggat atagacattg cttttaaagt
     2821 tgtttgcttt taagagttca atttgtgcat tttcaagctc tttttgagaa aaaggacaat
     2881 ttaaaagagt aatttttgca gactctaaaa gtcttttggt gtgatcttca agtctgaaaa
     2941 ttgctaagcc tttatctgtt ttataggctc tagttccttc aaaaacagca ttgccataat
     3001 gcaaagaatg ggttaaaaag tgcaaagttg catctttaaa atcaactaat tttccatcca
     3061 tccaaatttt atctgctgag atcatttttt accttttata gttgtttatt tcttaaaaaa
     3121 tattatttta agaataaatc gggattttat caaaaatata ctaacaataa gcttttatta
     3181 aattaaggtt ttttattaaa aaaaatatta ggtatttttt gaaataatta tgaaaaatta
     3241 tcgttaaaaa ggagaaatta tgccattagt aaatattaaa ttagcaaagc cgtctttaag
     3301 caaggaacaa aaagcggagc ttatagctga tattaccaaa cttttaagca cgaaatataa
     3361 taaaagtaaa gaaagagttg tggtggtttt agaagatgta gaaaattatg atataggctt
     3421 tggcggagaa agcgttgaag ctatcaaagc aaaggcaatt aaatgagttt aaacatagga
     3481 gataaagcac ctcagtttga gcttttaaat caagatgggg taaaaatagc attaaaagat
     3541 tttattggca aaaaggtgat tttgtatttt tatccaaaag ataatacccc aggttgcact
     3601 acagaagctt gtgattttag cgcaaattat gataaatttg gtggtaaaaa tgcggtgatt
     3661 attggtatca gtcctgatag cgtggcaagt catgaaaaat ttatctctaa atttgattta
     3721 aaacatattt tacttagcga tagtgaaaaa gaagttgcta aagcttatgg agcttggggg
     3781 cttaagaaaa attacggaaa agaatacgaa ggtcttattc gttctacttt tgttatcgat
     3841 gaaacaggta agattgttca aatttatagt aatgttcgtg taaaagatca tgctttaaaa
     3901 gtgcttgaaa gtctttaatg ttagtgcata tttgttgcag tgtggatagt cattatttta
     3961 ttgaagaact tagaaagact tatcctgatg aaaaaattat aggatacttt tatgatccaa
     4021 atatccatcc tttaagcgaa tacgaactaa gatttttaga tgtaaaaaga tcttgtgata
     4081 aacttggtat taagctttat aaaggtgagt atgagtatga aaaatggctt aatgctgtgc
     4141 gtggttatga agatgagcct gaaaagggtg caaggtgtga aatttgcttt gatgtaagaa
     4201 tgggatctag tgttaaattt gctgctaaaa taggagaaaa aaagcttact actacgcttt
     4261 taaccagccc taaaaaagat ttagaacagt taaaaaatgc tttacaaaaa gaatgtgagc
     4321 tttatagagt agagttttta gctcctgatt ttcgtaaaaa tggcggtact caaagacagt
     4381 ttgctttagc aaaaaaggaa atgctttatc atcaaaacta ttgcggctgc atttatgggc
     4441 ttaaaaaaca aaaacaagat aagaatttta ttgatgaatt aatgtctcct gtaaataagc
     4501 aaattttacc tgcaagtata gaagcaagaa tagctcttta taaaaaagta gttttatggg
     4561 aaaaaaaagg tataaaattt gaaattttaa gagagaaatt tttaaattat cgtcttttaa
     4621 gtgctttgat aaaattagat aaaaagcccg ttaaatctca tattttattt tattcgcatt
     4681 ttaaaaacgc ttatacaaga ttttctttgg atgaggaaaa tttaaaacaa aatttaaaag
     4741 aaggctttta tagaagtact aaagatgaaa tagttttagt ggaattttgg cgttttaatg
     4801 cattttttaa aaacaaatgg aaaaattttg aagatttttt aaaaaaacct ttaagtgttc
     4861 aagcagaaat taaatggcgt aataaattgt ttggaactta taatcttagt cctattatca
     4921 tcctcgaaaa tattttacct tcaagatatg aagtgatagc aaaaagtgaa atttatcatg
     4981 ataatcaag
//
LOCUS       DAPIWU010000111         4925 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.112, whole genome shotgun sequence.
ACCESSION   DAPIWU010000111 DAPIWU010000000
VERSION     DAPIWU010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4925
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.112"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..400
                     /locus_tag="RJ285_001578"
     CDS             <1..400
                     /locus_tag="RJ285_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384313.1"
                     /translation="FTGVFSSGKLYESQFEKSLNDLNASAIINLAKISFKEFNLNQEY
                     KNISFTELNSAKALIVANKENLLKLNDANLNRAKEVLGEKYTELLKTINQDKITENTI
                     KSTSVLYSIILLLCIFSLQKTARKNSIVPS"
     gene            complement(430..1131)
                     /locus_tag="RJ285_001579"
     CDS             complement(430..1131)
                     /locus_tag="RJ285_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDV7384314.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEINYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILEKISSLAKFGIVTKIDDYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1128..2330)
                     /locus_tag="RJ285_001580"
     CDS             complement(1128..2330)
                     /locus_tag="RJ285_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HDV7384315.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCMIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGVNALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGFISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            2433..3782
                     /locus_tag="RJ285_001581"
     CDS             2433..3782
                     /locus_tag="RJ285_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HDV7384316.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(3806..4849)
                     /locus_tag="RJ285_001582"
     CDS             complement(3806..4849)
                     /locus_tag="RJ285_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7384317.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNILNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         1791 a          816 c          809 g         1509 t
ORIGIN      
        1 ttttacaggt gtattttcat caggcaaact ttatgaaagt caatttgaaa aaagtttaaa
       61 tgatttaaat gccagtgcca ttataaatct tgcaaaaatt tcttttaaag aatttaacct
      121 aaatcaagag tataaaaaca tttcttttac agagttaaat tcagctaaag cattgatagt
      181 agcaaacaaa gaaaatcttt taaaattaaa cgatgcgaat ttaaatagag ccaaggaagt
      241 tttaggagaa aaatatacag aacttttaaa gactataaat caagacaaga ttacagaaaa
      301 caccataaaa tccactagtg ttttatatag cattatcctt ttgctttgta tattttcact
      361 ccaaaaaacc gcacgaaaaa attccatagt gccaagctaa gctttaaagc ttagcttgaa
      421 attttatcat cagtccttta agtagtattc tatagtagaa accactctta tggttttgat
      481 ataaggggtg tttttatctc tgttgctgat gctaaattgt ccttgagaag ccttttttat
      541 cttgcctaga tggctgtttg aatcttgtgc gaattttatc gctgcgtttc tagcattgag
      601 cgttgcttct tctatcattt gtggttttat ctcatttagc ttggtgtaaa ggtattctat
      661 gtcataatca tcgatttttg ttactatacc aaattttgca agacttgaaa ttttttctag
      721 tatgcttttt ccaagcttta cattttgagt atagatgagt aaattcgcag tgcctatgta
      781 tcggtatgca gcttgagtgt cgttgctata aggatcactt aaacgatcta tgatatttgg
      841 cgagttgtag ttgatctcat cctcttttac gccttgttct tttaaaaatt tgatgatatt
      901 ttctttatct tgttctagtt cttcgtataa atttgtaaga ttgttgtttg atcttgtgaa
      961 ttttatagga agtatcaaag tatccgcttc gacttctttt tgacttaaac cctttacgct
     1021 tacacttctt tcaagtgttt taaaatcgct taaagccttg ttaaatccaa aagctagaat
     1081 caaacttgct aaaactatgg ctaaagccat aaagatatta tttgttttca ttttttctcc
     1141 tttattttga ttagaaaata tatcatattt gcaaccaata cgcaagcaca cattacaaaa
     1201 gcaaggatta tcggcgtatt tgcgttaata gccccaacca cgaaggagat aaaacctgca
     1261 aaaccaaatt gcaccgttcc aagcaccgca gaagcagttc cgctatgttc tttaaacctt
     1321 gccatagcca aagtcgtggt attgggtgcg atgaaaccaa gcatagcgat acttgtaaaa
     1381 atactaagct caaaaagcaa gaaatttggg tgaaaaaagg catttgcaag taaaatcaca
     1441 gtcgatataa acattatcat caaagctttt gccaaaattt tttcgctttc gtattttaaa
     1501 accaatctcg cattgatatt tgcacagatg acaaaaccta aagcatttac cccaaaaagc
     1561 aaagcaaatt tttgctcact taagctaaaa aactgcgtaa aaacaaagct tgatcctgtg
     1621 atataagcaa acatcgccgc caaagcaaaa gaagcacata gtatataaac caaaaagcgt
     1681 ttatcgctta aaacaaattt gtagcttttc atcgcttcat gatgggaaaa ttttttgttt
     1741 ttaagatgag gtgcggattc ttttaaacca aaaagtatca tcaaaaaaag caaaattccc
     1801 aaagcaaaca aagtcgcaaa aatactatgc catgaaaaat actctagcaa aattccccca
     1861 aaagttggcg aaagcatagg agcaagagaa ctaaaaacca tcatcaaagc aaaaatccct
     1921 gcagcttctt tgatctcaaa caagtcattg acaatagccc ttgcgataac cacacctgca
     1981 caacccccaa gtgcttcaaa aaatctcaaa gcgataaaag cataaatatc atcgataatc
     2041 atacaaaaca aactcgaaac gatgaagaaa aatatcccta ccaaagctgg aattttacgc
     2101 ccaaaaatat cacttaaagg cccatatata agctgtccta aggcaaaagc gataaaaaaa
     2161 cttgcaatac taagttgggt taaaaaagaa ttagtttgaa aactttgctc cacatgagaa
     2221 agtgcaggta gatacatatc tgtagaaagt ggtgctatgc ttgacatcaa agcaaggata
     2281 acgatgagtt taaatttagc aaagccgtga attttggtgt gtttttgcat ttgtaatcct
     2341 aattattcta aaagaatgat tttaacaagt caatcttaga ataatctttg tttttctatg
     2401 ttaaatttag ggaaaaattc taaggaaatt ttatgcaaaa tttaaaccaa aatgaacaaa
     2461 tcaaatgccc aagttgtgga agttttatcg atatcagcac tgctttatat gctcaaattt
     2521 tagataaagc caagcaagaa atgctaaaac aaaaaaaaga atttgatgat gaggtaaatg
     2581 ctaaaagagc tgaatatacc aaagctttaa atgatttaaa aactcaaaag atagaacaag
     2641 aaaaactcat aaacgagcaa gtaagccaaa agcttctttt agaaaagcaa aaatttgaac
     2701 aagaacttct tatacaaaag caaaatttcc aaaaagaatt cagcgagaaa tttaacaaag
     2761 agcatgaaaa tgaaatgaaa atcatgcaag aagaactcga gaaaaaaagc aaagaactta
     2821 gcgagttttt aagcataaag gctgaaaatg aaaggctaaa aagagagcaa aaagaaaatg
     2881 aagaaagatt gaaatttcaa gccaaagaag aggcttttaa agaatttaaa gaacaagaaa
     2941 gcaaaaattt ggaatttgaa agagaaaaaa tgcgtcttga atttcaaaaa agtactcaag
     3001 agcaagatct taaatacaaa gaactagaaa cgaattttaa aagtgtagct caaaagctag
     3061 aagacgcaca acgcaggata gaacaaggct cacagcaact ccaaggcgaa gcagccgaac
     3121 tactcataga agaatacata caaagtgagt atttaagcga tgaagtaaaa gaagtgccaa
     3181 aaggcgtaaa tggagctgat tgtctgcata tagtaaagga taattttgga aatatttgcg
     3241 gaagtatttt gtatgagagc aaacgcacta aagaatttaa taaagaatgg cttgataagc
     3301 ttaagctaga cagcatagcc gcaaaaagtg atatagcggt tttgatcaca aaaactatgc
     3361 caaaagataa agaaaaaacg cattttaaag aaggaatttt gatctgtact tttaatgaat
     3421 tcaaaggtgt tttagcagtg cttagagaaa gcattataaa cgcttataaa ctcaaaaatg
     3481 ccttgcaaaa caaagatgaa aaaaatcaca ttttatacga atacttaaat tctaaggaat
     3541 ttaacacgca aatcactttt atactcaaaa cttaccaaaa tatgaaagaa gagttagaag
     3601 ctgaaaaaag ggctttgcaa aatatatgga aaaaaagaga aagagctata gaaaatctaa
     3661 gttttaattc cactgccata gtgagttctt taaatgcgat atttagcgac ttacaaggtg
     3721 gaaatttgat aggcgaagaa gggattaaaa gtcttgaaaa tttagcaaaa gatgaggatt
     3781 aattttgggc taagcccaaa attaatcatt ctcctgggaa gtgatttgga tttttccaag
     3841 gtccgtattt tacttttatg tattctttag ggtctaaatt ttgttgcggt gaggcaaaat
     3901 actcaggttt taatgatggg gatttgctat aagctgtatc aagtcctgca cgattttctg
     3961 tagtggttat aggcattctt acaaaacctg tattgacata agctgctata tctagtgcat
     4021 cttcatcgct taatatagga ttatccgcac tcgcaccaaa aggcatggct gattttaaaa
     4081 atcttgctaa aaatggtatc atagccatgt gtccaccatc aggatagata agtaaagatg
     4141 gatataaatg tccgctacct tgttcgtaat tatcattttt taccccaagt cctctttcgc
     4201 catggcaagc aacgcaattt tcttcaaaga gctttttccc acgcacaggg tcagctgggc
     4261 gatttggaaa attcatctta gcaaaaaaat ctccttcaag ttttacaccg tctttgatac
     4321 cataagcttc ttttagccat ttaaaataag ctaaaattgc tttcatttct ttagaatcat
     4381 taggaaatct atgagagtca gttccgccca ttccgcgaat tctatcttca acagagatga
     4441 ttttcatcgt ttctatgtca agtcttggat aattgtttag gatatttaaa aatggaataa
     4501 catatttttt tgtccctggc aaaccattgc cgtcattgtc catgtgacag gaaatacaat
     4561 ttacttcgtt gcttgtcttt tttagcttgc tatagggtcc tagagtactt tctgtcttgc
     4621 ttaaaagctc tatgccataa cggattaaat ccccttgctt gccttttgga acatcattga
     4681 tgcttaaatt tttatttggc cattcttgca caggtctttt ggaaagttcc ttaaaatact
     4741 ctactccttc cttgtcgctt aattcttctc ctactttgta atcactcacg cttttagcac
     4801 taagactcaa actaagacat aaaccaagca ataaaatgtg ttttttcatg attttcctcc
     4861 tttttatttg cagttcaaat tgattttagt gtattttttc ttaaatatta agcataataa
     4921 gaata
//
LOCUS       DAPIWU010000112         4870 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.113, whole genome shotgun sequence.
ACCESSION   DAPIWU010000112 DAPIWU010000000
VERSION     DAPIWU010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4870
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.113"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            26..634
                     /gene="plsY"
                     /locus_tag="RJ285_001583"
     CDS             26..634
                     /gene="plsY"
                     /locus_tag="RJ285_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDV7384318.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            619..936
                     /locus_tag="RJ285_001584"
     CDS             619..936
                     /locus_tag="RJ285_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDV7384319.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLK
                     KKY"
     gene            1015..1686
                     /gene="hsrA"
                     /locus_tag="RJ285_001585"
     CDS             1015..1686
                     /gene="hsrA"
                     /locus_tag="RJ285_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HDV7384320.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            1799..2044
                     /locus_tag="RJ285_001586"
     CDS             1799..2044
                     /locus_tag="RJ285_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDV7384321.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            2044..3504
                     /locus_tag="RJ285_001587"
     CDS             2044..3504
                     /locus_tag="RJ285_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7384322.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDSYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(3501..4298)
                     /locus_tag="RJ285_001588"
     CDS             complement(3501..4298)
                     /locus_tag="RJ285_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384323.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTVNNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVIFDHANKRYTMIIGNSNV
                     LLESVEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(4299..4607)
                     /gene="fliN"
                     /locus_tag="RJ285_001589"
     CDS             complement(4299..4607)
                     /gene="fliN"
                     /locus_tag="RJ285_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HDV7384324.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(4607..>4870)
                     /locus_tag="RJ285_001590"
     CDS             complement(4607..>4870)
                     /locus_tag="RJ285_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384325.1"
                     /translation="KEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDA
                     KGDDEYKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
BASE COUNT         1781 a          716 c          661 g         1712 t
ORIGIN      
        1 tttaagatga tttgaaaagg atattatgga aaatttaata atttacgctt ttatatatct
       61 tttaggttca atcccttttg ggctaatcct agctaaattt tttgctaaaa ctgatatcaa
      121 aaaagaaggt tcaaaaagta taggagcaac caatgtttta agagtagtaa aagaaaaaaa
      181 tcccaaacta gcaaaaaaac ttgccattgc tacaataatt ttagattttg caaaagcagc
      241 tattccttta ctaatcttga aatttcttca ttatgatcaa gctttgcttt ggagcgtcgc
      301 agttttggct atttttggac actgtttttc aatttacttg ttatttgaag gagggaaagg
      361 catagcaaca ggagcaggcg ctatgatagt tttacttcca ttggaagtgc ttacagcatt
      421 tattgtgtgg gtagttattg gaaaaatttt taaaatatct tcgctagctt ctttagcagc
      481 gttacttgct tttgttataa gttcttttat atttaattat gacttagaaa ttcatacaca
      541 tgcacccgtt ttcattatcg cttttattat agtatataaa catctaccta atattaaaag
      601 attgattttt aaagaagaat gcaaagtcat ataaaaataa aatttcactt taagtgtatc
      661 attggtatat tagatttcga aagaagaaaa aaacaaaaaa ttattatcaa gcttaaagct
      721 aaagcaaatg aatttttaaa ttatgcagag gtaattacca aaattaaaac atggtataaa
      781 aaagaagaat tttacaccct tgaagagtct ttagactttg taagcttaaa tttaaaaaaa
      841 gattttccta atttaaccaa tcttaacata aaaattttca aaccccatat aataaaaaat
      901 gctacagttg gggttaaatt gaaaaaaaaa tattaatttt tttttaaaga tatctaaaca
      961 tttacttaag ctatgatata attctttaaa tttttcttaa taaggataga acaaatgaga
     1021 attttagtta tagaagatga gattagccta aataaaacaa ttatagacaa tcttaatgaa
     1081 tttggttatc aaactgattc ttctgaaaat tttaaagatg gagaatactt tatcggcatt
     1141 agacattatg atttagtttt agcaaactgg actttacctg atggagatgg agcggaactt
     1201 gttaacacta ttaagcataa atctccaaga acttcggtta tgattatgtc ttcaaaaaca
     1261 gacaaagaaa cagaaatcaa agctttgaaa gctggagctg atgattttgt taaaaaacct
     1321 ttagattttg atattctact cgcaagaatt gaagcaagac taagacttgg cggaaccaat
     1381 gttattaaaa ttgaagactt agttattgat ccagatgagg aaaaaattac ttataaaggt
     1441 caagatatag aacttaaagg aaaacctttt gaagttttaa cgcacttagc aagacattcg
     1501 gatcaaattg tatccaaaga acaactttta gatgccatct gggaagaacc tgagctagta
     1561 actccaaatg ttatcgaagt agctatcaat caaattcgtc aaaaaatgga taaaccatta
     1621 aatatatcta ccatagaaac agttcgtcgt agaggatacc gtttctgctt ccctaaaaaa
     1681 tcttaacaat tttgcacctt cggtgcaaaa aatttatctt tatttctatt tttatatttt
     1741 atttaagttt ggttattgta taaactaaaa ttatttttta aatttttgaa aggttatgat
     1801 gtctctttta attacaaaag actgcgtatg ttgtgatgct tgcagagaag aatgtcctga
     1861 tgaagctatt tatgaaaata gtccaattta tgtaatagac cctgatcttt gttcagagtg
     1921 cgttaatgat ttttcagagc ctgcctgtat tgttgcttgc ccatatgaat gtatcattcc
     1981 tgatcctgat aatgtagaaa ctatagaaga attaaaactc aaacatagag atagagaatt
     2041 ttaatggcaa aaaaaacagc cgttgttgat cttggctcaa actccattag aatggtgatt
     2101 tttgaaaaaa cttctagata tggtttttat acaacttgcg aatacaaacg caaagtaaga
     2161 cttggagaaa atgcttataa taatggcaaa attctccaag aagaagccat gcaaagagcc
     2221 gaagatgcct tagctttttt caaacaatgc gctttaaagc ataagtgcaa aaaaatattt
     2281 atagtaggca catcagcctt aagagatgcc ccaaattcaa aaaatttcat taaaagaatc
     2341 aaagataatc tgtctttaaa tatacgctgt atagatggaa aaagcgaaag ttacttaggt
     2401 ggtcttgcag ctctaaattt attaagtcct tttaaagatg gaaccacttt agacataggt
     2461 ggtggttcta gtgaattgtg tttaataaaa aataatagaa ttatttcttg catatctctt
     2521 gatattggca ctgttaggct aaaagaattg ttctatgata ctggaaaaat ggattcttta
     2581 gaagaattta taaaaccaat tttagaacaa attcctaaag aattttgcaa tcaaaacctt
     2641 attgcaatag gtggaagctt aagagcaata tctaattcca tcatgcaaaa aaattcctat
     2701 ccactgaaaa atttacatga ttttcgctat atgctagatg aagaaaaagg acatatttta
     2761 aaaattttta attcaaactt agactcttta atcaattttg gcataaaaaa ggatcgtttt
     2821 gataccatta aagagggtat atttattttt ttaaagattg cggaaaaaat aaaagccaaa
     2881 caagttatca cgagtggggt tggaatcaga gaaggagttt atttgcaaga tttgcttcgt
     2941 cctaaaatca cttttccacc aaattttaat cctagcttaa aatgtttaca agataaattt
     3001 ttacaatcaa aacaaaaaaa taaaactcca cattttgctc tgcaaatttt tacaaccctt
     3061 aaaaatcttc ataaacttaa cgatagctat aagcatactt tactaaatgc tgccaaatta
     3121 tgccatattg gagaatattt aaatttctat tttgctaatg aacactctgc tcattttgta
     3181 ctaggtggat taaattatgg attttcacat aaagaaaaag ctttaattgc tagcattatt
     3241 aagcttaatg gaaaaaaagt taacccttat aatcttgaac cctataagca acttttaccc
     3301 aatattcata ccatttcatg gcttaatttt attttgtgcc tagctaaaac tttaagcaca
     3361 aatgaagata agattgattt tgcttttgca aacaatactc tttatatata tcaagaaaac
     3421 aaaattctta atttacccaa agatgagctc aaaaaaattg caaaaccagc taccatagca
     3481 ttagcaatca atcaaaaaat ttaagatttt ttaccttttt gacgctgctc tataagattt
     3541 tgaattcttt ttttattctc ttcaaaaaaa gaatcaaaat ttttctctgt tttttctgta
     3601 tgttttattg tttgttcctc tggaatttca acactttcta aaagcacatt ggaattacct
     3661 attatcattg tataacgttt attagcgtga tcaaaaataa caagttgatt atttttatct
     3721 aaaaatcttt ggaaaatcat agtaaaatct ctagaaacat tgttattttt ataaaccata
     3781 gtctttttaa accaccaaag cactattaac aaaataacta aaattagcat tactaagata
     3841 taatttgtat aatcataccc ttctaaactt gtactttttg gtttaggcat taattcttga
     3901 gaattattca cagtagttgt aggtacagat tcgatatttg cttttccttg ctctatagct
     3961 cgtatcctta ctccaaattt atcattgata gagctaagtt ctaaattaat attttgtttg
     4021 ttttgtagca taatataggt attattattt ttagaactaa tactaatttt atctacaagt
     4081 tgagagttaa gttcttttaa ttcatcttta gaatacgtta aatcactaaa agttaaaaga
     4141 gttaaatttt tttctttttt ttgagaaatc ttgccattat aggcattatc aaaagaaagc
     4201 attaaatcta ctcgatcatt tctatcgtag atattaaaac taatcagctc aacactatat
     4261 aaaggtaaaa ttaaaaaaaa taatactagc aatctcattt aaatttcttt tttaaagtat
     4321 tgaagcacag tcttagaatc caaaatttca ttaattctta tagcgagatt tttttcataa
     4381 accataacct cgcctttgcc aaaaattctt ttattgatat aaagctcaac gctttctcca
     4441 gcaggctttt caagatcaat aaccgaacct acttcaagtt ttaaaagctc cgctacactc
     4501 atatttgtag ttccaagctc gcttacaaaa tctactgtaa tatctaagat atcttcataa
     4561 gattgtaaaa gcccatgatg aatgttaaac tctatatcat cgctcattat ttgcaatatc
     4621 ctattctaaa ataacaattt tcaaatttat aagttaaagc ttcatctaaa actatttcag
     4681 aaaaatcaac ttttcctaaa tattccggaa ttccgagttt atactcgtca tcacccttgg
     4741 catcatttaa caaattttta gcataaccta taatctgatt ggcacattct ttagttaaat
     4801 cgcaccagtc atcttcttta aatttttcat cattaattaa aatttctgca atttttttta
     4861 aaaattcttt
//
LOCUS       DAPIWU010000113         4807 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.114, whole genome shotgun sequence.
ACCESSION   DAPIWU010000113 DAPIWU010000000
VERSION     DAPIWU010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4807
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.114"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(148..1203)
                     /locus_tag="RJ285_001591"
     CDS             complement(148..1203)
                     /locus_tag="RJ285_001591"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDV7384326.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCEGSFLK
                     TLSSRELAAGMAEFIKMAAMFDDSILDFIEKIDEKSFLNATCENEIFTQIIARSIELK
                     SRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGF
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(1249..2649)
                     /locus_tag="RJ285_001592"
     CDS             complement(1249..2649)
                     /locus_tag="RJ285_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HDV7384327.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFGRNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            2679..3800
                     /gene="tgt"
                     /locus_tag="RJ285_001593"
     CDS             2679..3800
                     /gene="tgt"
                     /locus_tag="RJ285_001593"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDV7384328.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAIAYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            3802..4569
                     /locus_tag="RJ285_001594"
     CDS             3802..4569
                     /locus_tag="RJ285_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HDV7384329.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQNEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILNKNTKEHLTR
                     IDTLYTLTSAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYYSKKTKEFDLDEGKKAKKQTK"
     gene            4622..4698
                     /locus_tag="RJ285_001595"
     tRNA            4622..4698
                     /locus_tag="RJ285_001595"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4656..4658,aa:Arg,seq:gcg)
BASE COUNT         1739 a          753 c          602 g         1713 t
ORIGIN      
        1 ttataaaatt ttcataacgt atattccaaa tactagcact gattacagta tttaaagtat
       61 taattttctc atttatatta ttaataatag tccgatttac atcaccaaaa gcaaaaacaa
      121 caaaaaaggt taaaataata atttttttca ttggaattct cttaaagttg caattatatc
      181 ttctttagaa atatcacctt ttatcaaacc cttacccaaa ggactagcaa gaacaaaatt
      241 gattttttta ttagagcttt ttttatccat gaaaaaagct tcataaaatt catctacatt
      301 gttgatttta tatgatattg gcaaaccgaa tttaagtaaa atatctttta ttctttgact
      361 ttgcatttta tccaaaaacc ctaaatttaa agccaattga tttgccataa ccatacctat
      421 agccaccgct tctccgtgta aataaagctt ataatctgta aaattttcta taacatgagc
      481 aaaagtatgc ccataattta aaagcattct aagccctgat tctttttcat cttgttcaac
      541 aacccttgat ttaagttcta tgcttcttgc tataatttga gtaaaaattt cattctcaca
      601 agtagcattt aagaaacttt tttcatcaat tttttctata aaatcaagta tactatcatc
      661 aaacattgct gccattttaa taaattcagc catgcctgca gcaagttctc tagagctcaa
      721 agtctttaaa aaagaaccct cacaatatac agctttaggt tgataaaaag tgccaataag
      781 atttttacca aaattattat taacacctgt ttttccacct actgctgcat caacgcaagc
      841 taaaagtgta gtaggaatat ttataaaatc aatacctctt tgataaatac tagcagcaaa
      901 tccgcccata tcactaatca cgccaccacc aaaacttata agcacgcttt ttctatccaa
      961 tttagaatta aacatttggt ttaaaatttc ttccatggtg cttaaatttt tatattcttc
     1021 accatctttt acagtggcaa taaaaatttc ttttgcctta attttagaaa gtaatgtttt
     1081 caaatgaaga cctgaaatct taggatttga aagtataaaa accttactat caaattctaa
     1141 ttcttcaagt tcatcaatat aaaccttata agcattttct tttaacttaa cttctacttg
     1201 cattgaacta ctctttttgc gtttattcta tcacatttaa ttaattattt attctactgg
     1261 tatgaaaagt tggtaatttt gtctcatttt ataataatgc ctatttaaat ttgtacttaa
     1321 atttctgcca aaatctctat ttagtaattc tttttgaaaa ctcacaaatt gtaacaaatc
     1381 ttcgcgatat tgcaaattta aaagagggtt ttcatcattt ttattaataa tttgtatatt
     1441 tttatcataa agcttagata aacttctaaa atactcctcc atatctgtag tattttgaga
     1501 atttggatta taataatata aaataactcc aaaatcaagc tgtttactta aatcagtaat
     1561 gacatttgca ttgttttcaa gttcactctc atcagcactt aaaataatcg cttctttaag
     1621 ctcatcaaaa gaagcttcac ccactttcat aataggaatt tttaaatcaa aaaaagcttg
     1681 tttttctttc tcaaaatttt ttatatcagt tacaactaat cctatatcat tattttgcaa
     1741 ccatgtggaa atttgtttaa aatccgtgtt gaaataatca aaaaacacac cttctttatc
     1801 ctcagaaagt ttttttaatt tttcatacat tacccctaat ttaggattga taacatgtat
     1861 aaaaaatctt tttgcattgc ttttttgagt taattttaaa gtagtatcaa gcactctttc
     1921 ttgcatattt tgattcatat ttttcatatc aattaaagca aaaacattac ttccaaaagg
     1981 cataggaaat tgccctgctt tgcctcttat attatgaaaa atactttgta aaacaacagg
     2041 atctccaacg atcaaaatgc tatcatttgg ctctaaaaca aaagatggtt ttacaaaata
     2101 aattttagaa tttctataaa taaggactat gcgccacctt ttttgttgta ttgaacttat
     2161 gtgcctataa gcaaaaatag accctgctgg aatttttact tccataatct ccccaactcc
     2221 aagtcctata tactgagctg ttaaagcaat atctggtaaa aaatccataa atctacggct
     2281 taaagtcatt ctagcatcag ctaaatttgc atgagtatca ttaacactta acccccaaaa
     2341 atccattatt tctatttcta aatttggatt taaagaacgc aaagcctcat aacttttttt
     2401 agtttcaaat tcatcttgca tataaataaa agcctgttta aaatccttac tcataatatt
     2461 ttcaagacgc gctgtgcttg taggatcaaa ataatgcaag tcaatatact cactagaaat
     2521 atttaagtta tttttttcac tattttgaca cactactgta aaaaagtaac ctaagccttt
     2581 ttcaaaacaa agcctttcta agaaatgctt tgctaaaata ccatctatta taattaaaat
     2641 attattcatt ttaaactcca aaaaggaaat tataacaaat ggaatttaaa ttaaagcata
     2701 aagatggaat ggcaagggtt tgtgaaatca ctaccgcaca cagcactttt ttaacccctg
     2761 tttttatgcc tgttggcaca gtaggagcgg ttaaaagtct tgatgctaat gatatgaaaa
     2821 atgagcttga tgcaaaaatt attttagcaa atacctatca catgtacttg cgtccaactt
     2881 ccaaagtagt aaaagatttt ggaggtttac atggatttac gaaatttgat agaagttttt
     2941 taaccgatag tggtggtttt caagcttttt ctttaagtaa aaattccaaa cattttaatg
     3001 aaggtataga atttaaaagt cacattgatg gaagtcgtca tctttttact ccaaaaagtg
     3061 ttttagatac ccaatatgat tttaactctg atattatgat gattttagat gatttagtag
     3121 ccctacctgc aaccaaagaa agggttaaaa tttctgttga tcgcactata ctttgggcaa
     3181 aagaagctat tgcttatcat aaaaatatgc aaaataaagg tataggtata gggcaaaata
     3241 tttttggtat tatccaaggt ggcacagatt atgaagaaag aaagcgttgt gctttaagtt
     3301 taaacgaaat gccatttgat ggtttagcta taggtgggct tagcgtgggc gaagaaaacg
     3361 ccttgatgta cgaaacagtc caaaacttaa acccttatct agatgaaaat cgtccaagat
     3421 atttaatggg cgtaggaacg cctgaagatt tagtagaaaa tgttgagcga ggagtagata
     3481 tgtttgactg tgtgatgcca actagaaatg caagaaatgg aacatttttc acaagttttg
     3541 gaaaatttaa tatcaaaaaa gcagaattta tcaacgatca tgaagttata gattctactt
     3601 gctcatgtta tacttgtcgt aatttttcaa ggggttattt aaaccatctt tttaaagcta
     3661 aagaacttac tttttttcgt ttggcaagtc tgcacaatct acattattat cttgaacttg
     3721 caagaaagat gcgtgaagca attttgaaca attcttttac gcaatttaaa agaaattttt
     3781 atcacttaag aggcaaataa aatgctagag ctacacgaaa atctaaaaaa aatcctgcaa
     3841 gcaaagaatt tagaaacttt ctatagcgaa atttatggac aaaaaatttt tgtttacgtg
     3901 ggattaaatt tagaaacttg gctttttaat gatgaaaaaa tttataaact tcaaaatgaa
     3961 gaatttaagc tttctagcat agaagaattt tcaaatttta ttaaatctat tttagaagat
     4021 tttaaagtac aaaatactca ttttcaaaac cttttagaac acaaagaagg tattatctta
     4081 aaaggtggtt ttgttaaaaa tttttacaaa aaatcctttg ttttaagaca aaaaattaac
     4141 aaaaatctaa agcaaattaa tcttctaagt gaagctttca atcttttgct tagcgaacaa
     4201 gcacaataca aaaaacattt aaaaattcta aatttatcca tcagcatctt aaataaaaat
     4261 accaaagaac atctaacaag aattgatact ctttatacat taacaagtgc aattaaaaat
     4321 gaaaaaatga ataaaagtat ttatctttta agcatacttt cttctatttt cttaccttta
     4381 aatttgatcg taggattttt tggaatgaat actaataatc tttttttcaa agatagccct
     4441 tatggtacac tttatatttt ttctttgatt tgctgtattt tgattgtagg ttttatattt
     4501 tattattcaa aaaagactaa agaatttgat ttagatgaag gtaaaaaagc taaaaaacaa
     4561 acaaaataag caaaattttg cttattttaa gaatatttat atataatttt aacttatttt
     4621 tgcgctcata gctcagctgg atagagcatt tgattgcggt tcaaaaggcc agaggttcga
     4681 atcctcttga gcgcaccatc acttcttttc ttaaataatc ttgaatcatc tgaaataatc
     4741 atctaaagca tgatatagca atgtttgaaa gcttctaaaa taatctcaaa taatcaattt
     4801 tgacaat
//
LOCUS       DAPIWU010000114         4755 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.115, whole genome shotgun sequence.
ACCESSION   DAPIWU010000114 DAPIWU010000000
VERSION     DAPIWU010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4755
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.115"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..751)
                     /gene="map"
                     /locus_tag="RJ285_001596"
     CDS             complement(<1..751)
                     /gene="map"
                     /locus_tag="RJ285_001596"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDV7384330.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPTDKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILS"
     gene            complement(761..1504)
                     /locus_tag="RJ285_001597"
     CDS             complement(761..1504)
                     /locus_tag="RJ285_001597"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDV7384331.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKEKENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNL"
     gene            complement(1506..1964)
                     /locus_tag="RJ285_001598"
     CDS             complement(1506..1964)
                     /locus_tag="RJ285_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDV7384332.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTTKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(1973..3142)
                     /gene="nhaA"
                     /locus_tag="RJ285_001599"
     CDS             complement(1973..3142)
                     /gene="nhaA"
                     /locus_tag="RJ285_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDV7384333.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(3139..4287)
                     /gene="nhaA"
                     /locus_tag="RJ285_001600"
     CDS             complement(3139..4287)
                     /gene="nhaA"
                     /locus_tag="RJ285_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDV7384334.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEHADKLAILIASFLSAIVGFIYLKIVK"
     gene            complement(4431..4613)
                     /locus_tag="RJ285_001601"
     CDS             complement(4431..4613)
                     /locus_tag="RJ285_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HDV7384335.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         1800 a          905 c          578 g         1472 t
ORIGIN      
        1 tagaaagaat ttcagcacgc ccattaatca cggcaacaca atgttcataa tgagccgcat
       61 tcagcccatc aatacttcca gcatcccatt ttccattata atgctttggt gttccatctt
      121 tttggcatat cataggctct atgcaaaaca ccattccatt tttaatttta gggccacttt
      181 ttgcactcgc acctttttct aaatagttta aaatttcagg ctctccatgg ggctttcgtc
      241 ctataccatg cccgcaatat ccacgaagcg ggacaaaacc tcttgcatgg ataaattcgc
      301 ctaaagcagc tgaaagttcc ttaaaacgca ttccatcacg aataatatct atagcatgat
      361 ataacgcgtc tttagcacaa gagattaaag ctttatcagt gggtgaaact tctcctatag
      421 caatagttct tgctgcatcc ccataatacc catcaatcaa acttcccaca tcaagaccta
      481 aaatatcacc ctctttgata attttatcat ctggaattcc atggatacaa acttgattta
      541 aagatgtgca aatggcacct ggaaaaccat aaagtccctt aaatgatggc ttggcgccaa
      601 ggcttaaaat ataatcttct gccattttat cgatttgttt taagctcatt cctattttaa
      661 tttcattctc taaaaaattt aaagtttttg ctacaatttg atttgctatt cttaattttt
      721 ctatttcatc tggttttttc aattctatca ttttatttcc ttataaattt agccaaattt
      781 tagcagtatt ttttaaagat tcaacatcgc ttgaagcata aaaatgtaat tttgctttat
      841 gatttttcaa atctatattt tctttttctt taagaaattc aactatagca tctcctgaat
      901 gaattaattt tgttttatca ccaaaatact tacttaaaga acgacctagt aaagggaaat
      961 gagtgcaagc gagtatcaaa gcatctggag ttgtgatatt tttaaaataa tactccatag
     1021 cactttgcaa aaaatctcct tcaaaaatac cttcttcaac cataggcaca aaaagccctg
     1081 tagctaaagc atttatattt gtatatcctt gggataataa acgcttttgg tattcttctg
     1141 atttaatggt tgcttttgtt gcaatgacta aaatttcttt atttttatca tgcaaagctt
     1201 ttatcgttgc ttcaacccct gcatcaatta caccatatac tggaaaatgt gcttttgtcc
     1261 ttaaagcatc taaagcataa gcactagcag tattacatgc aatgataagc atatcaattt
     1321 gaaattgttc aaaaaattcc aatgcttcaa gacagaactt tataatagta tctttatctt
     1381 ttactccata aggaactctt gcagtatctc cataatagat aatttcatca aaaagtctag
     1441 cttcataaag agattttaaa acgctaagcc cccctacccc gctatcaaat acacctattt
     1501 tcactttaat accttcttgc tcctatataa cgagccttcc aataagaact atttagctcg
     1561 acttctttta ctccaccttt agtagataaa tgtataaatt ttcccttgct catataaata
     1621 ccaacatgca taccatttgg ccctctacct gtcttaaaaa ataccaaatc tcctgtttgc
     1681 aattttgatt tagaaacttt tcttccagaa cctaattgag tttttgtagt gcgaggtatg
     1741 cgtatattaa gctgagctaa tgcgctctgt gtaaatcctg aacaatcagc acctttttta
     1801 gtagttccac ctaaaacata aggggttttt ttccattcat ttgcaataac cttgagcctt
     1861 gcttctttat ttgtgttgta actaggacga tagtttagat tctgataaaa actacatcca
     1921 cttataaaaa atataatcgt aataataaaa aaaatatgcc tcatcaatcc ccttaagatc
     1981 gagtagtaaa gaatttaaga taaataaaac cccaaatccc agaacaaaat gaggctataa
     2041 gaatagctaa gttatctgca taattaaaaa tatcactaac ttcatacgcc aatccatcaa
     2101 taaacaaact cattgtaaaa ccaattcctg taagtatgca aaccccataa agttgtttca
     2161 aatttgaacc ttggggcaaa gctgcaaatt taaagcggat tgccaaataa gaaaataaaa
     2221 atacacccac ttgtttaccc acaaaaagcc ctaagaaaat acctatactt acacctgaaa
     2281 aaattgctcc tatatcgata ttggataaat ttactccagc gttagcaaaa gcaaataaag
     2341 gtaaaataat aaaagcaatc caaaatttta agctttcata aatttcttct aaaaatgctt
     2401 ccccattttt agtttgcatc ggtataaaaa atgctgttac aattccagct aaagttgcat
     2461 gtactccact ttttaaaaca ctaatccaaa gaataactga gcaaataaaa taaaaagact
     2521 ttcttgttat ccctaaaaga tttaaaataa gcattaccaa aatagcaagt cctgcaacga
     2581 caaaagcaac tattgataat tttgtcgtat aaaaaatagc tataattaaa atagcaccca
     2641 catcatcaaa aatagccaaa gaaagtaaga aaatttttaa acttgatgga atgtgcttgc
     2701 cacacatcat taaaatcgct aaggcaaacg ctgtatctgt ggctgtaggt atagcccaac
     2761 cttttaaagt ataagcatct cctatattta ccaaagcaaa caacatcgca ggtataagta
     2821 taccccctaa agcagccata aaaggtaaaa caatattttt aggattttta aaatccccat
     2881 gcaaaaattc cttcttaagc tcaagcccta tagcaaagaa aaatatagat ataagcccat
     2941 catttatcca aagtaaaaaa ggcttgttaa gctcaaattc acctacacta aatccgactt
     3001 ttaaatttag aaattctcga taatgttcgc taaaagaccc gttttgcaca agcaaagcaa
     3061 gcaaagtaca aactataagt aaaacaccac caaaagcctc gtttaaaact aaagttttta
     3121 atttatgtac tatattattc atttaacaat cttaagataa ataaaaccaa caatggcact
     3181 taaaaaactt gctattaaaa tagcaagttt atccgcatgt tcaaaaatat cactattttt
     3241 ataagccaaa ccatcaataa acaaactcat cgtaaaacca atgcctgtta aaatacatat
     3301 accataaaat tttccatatt taatattttc aggtagtttt gcaagcttaa gtttgatagc
     3361 aataaaacaa aaagtaaaaa cacctagttg ctttcctaaa aataatccta gaataattcc
     3421 aaggcttaca ggcgagaata ccgaaccaag atgcatatct ctgatatcaa tcccagcatt
     3481 ggcaaaagca aataaaggta aaataaaata aaccacccaa ggatttaaat ccttaagaac
     3541 ttcatgcaaa taaggttttt tattttttgt atcaagcggt ataaataaag aaataatcac
     3601 accagccaaa gtcgcatgta ctccactttt aagcatagct atccacaata caacacctac
     3661 taacacatac aaagaaagat gggtgatgtg ataataattt aacaaaagca gagcaaatat
     3721 acaaaacaaa caaataataa tcgccaaagc tgaaagctga tctgtataaa ataaagcaat
     3781 aataacaata gcacccaaat catcaaaaat agctaaagaa agtaaaaaaa gctttaaact
     3841 tgtaggaatt ttatttccta aaagcatcaa aatacccact gcaaaagcta tatcagttgc
     3901 tgtaggtatt gcccaacctt tcatagcaaa atcatgagaa taattaatag caataaaaat
     3961 taaagccgga gtaatcatac cccctaaagc tccaaatata ggtaaagata cagctcttat
     4021 atttttaagt tgcccacgta aaatttcata ttttaactca agccctatac atagaaaaaa
     4081 tatagctatc aaaccatcat ttatccataa atccaacgac tttgaaattt gaaaatgatc
     4141 aaatcctact gtaaaattag catgaaaaaa atctgtataa ataacactta aagaagaatt
     4201 tttacataat aaagctaaaa atgtaaaaaa tataagcaaa ataccaggga aagtttcact
     4261 taaaaccatc ttctttatca tttgcatcct tgctcctaag taaatatttg taaaaaattt
     4321 aatacgataa ataaaatggt aaaattataa cgaaaaaata ctaaagaaat aattatttaa
     4381 aaaaacaagc ccaagatacc aaaaagttct taagcttgtt cttaagatat ttaagcgtaa
     4441 atatctaaac cactagagct agaagcttgt ggagcggagg cttgagagac accttccata
     4501 ccttcgatga gttcattcat caatgcctcg tttgtgtcca tagatttttt caaaactgaa
     4561 gtattaacag cagtcattaa attaacatta cccatagaaa catctgaaac catacatcct
     4621 ccttttagat tgagtcttaa gactttattt aaatcggatg atatttttaa aacttaatat
     4681 tttttactaa actttttaaa atttttcaag gaagccaata tctgaaatta aaaatcataa
     4741 atttttaaga taaaa
//
LOCUS       DAPIWU010000115         4652 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.117, whole genome shotgun sequence.
ACCESSION   DAPIWU010000115 DAPIWU010000000
VERSION     DAPIWU010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4652
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.117"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..335
                     /locus_tag="RJ285_001602"
     CDS             <1..335
                     /locus_tag="RJ285_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HDV7384336.1"
                     /translation="KKEVVEGHYNINISDKMQVLSEKEMDYKSKDNILFTSNESIGFE
                     SDKNTSMVADNITTIHELKADSEATIQVGETIINAKPDCVIIKAGGVEVIIDSNGLVV
                     KGGELKAE"
     gene            346..1125
                     /locus_tag="RJ285_001603"
     CDS             346..1125
                     /locus_tag="RJ285_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384337.1"
                     /translation="MKKPFYKLKRFYIPCGVLIALIIFISLTYHFLQRPLELIFWDRY
                     YYEKEYQNAKDMYKLFKSNEEEFKKVFKEQNLNEELKTNQKELLNYMHHFKRDSNFMQ
                     ILGLDNAYLKALRDKTSIFGRKSENNLNYFYLASNSTTNLDEMNNFISIIDKYIIFIN
                     KIDTLPDTYTLMKIAFNADYFLFNLVPFASSLDKNFICSIPQKEQLLENMINSYEKMD
                     LLYKTKLKTEIQEMIYPAIYATKKLNHFIDIAKGRLNACGK"
     gene            1109..1282
                     /locus_tag="RJ285_001604"
     CDS             1109..1282
                     /locus_tag="RJ285_001604"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384338.1"
                     /translation="MHVENNLSPEDRQGIENYLIILNTISFLGDLNIKYNNHNAKIKN
                     YSSGYCKYYCKIA"
     gene            1298..2158
                     /locus_tag="RJ285_001605"
     CDS             1298..2158
                     /locus_tag="RJ285_001605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384339.1"
                     /translation="MKKLFYRLNFLFNTKLKKLTWIVAILFIGYKLLFYTEIKNGYVK
                     VTLRPIVTLNQEGYCIKEGRRLSQNELFERATKDWLEKLYNQAHDPLVMNADGDWLDI
                     TNCYYSSKEKAKKGLNCQFYSNGKQFGIDDIAKQINLNKSQEENMQKIMQGFSIVRPF
                     EEEKILTDDLELKYSLLLQDRLGDFTFMPYDIRFIVVGGDTGYYSKFGYSVFALMIQK
                     YFIGNDHDFKFKKGTVEYWKNKDNKNNHEYIYYPITNCGEVEMRYDFDPPGLYYQLFH
                     DMQWRDEWHR"
     gene            2146..4089
                     /locus_tag="RJ285_001606"
     CDS             2146..4089
                     /locus_tag="RJ285_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384340.1"
                     /translation="MASLNLKGDYGVEILSYYLWGQSTPPSDLARKDNRVLIGKDYQA
                     RDEKEIIIQASALDYMKYVDRYTNATNFGIFQNFFKSVFSEKELGEFKDKIENETYIL
                     ELDDIIKTKVYGGVNPFLDEDNKNKDKSTKDKENNEENKYEKYDENKMAVRIIHYYLD
                     TNSGNYAKRAFAFGSTSIAFNKDVKFHISAKTYEPVCISNLKLYPLKDNFDFESDSSL
                     AEFVNFFLEKELDPLKIGRTVNIHFIDQEKITPMVIYKRVFQILQNQSFNSLTPSITS
                     LREYYKTRILPSGVLYLQDDNTNSQTNLEQTILYNNTSFNKISKEPLNKSSSSAKKPC
                     FITLYLKDEHNKPIANAKIIIKGFKHDEALRVVNLKRRSDEKGKIKFDKEKYFSDCYS
                     FKVKLDESEAYFPTPLQNAKRIFNNYTHHKVGLILKFKAKGHLVYDGFNLYHYKGNEL
                     INSYMARSGTAKADNEKRSKKQIANYFYQDEKDTSKGKKAYFYYDDESIKDRFGTLPE
                     GEYYLKINEIAKDTNPSFLKDYPFEIGKTWGKCCVRLYTNKECSKTFKELKIKESNEK
                     ENKKSKKEQSIIKDNLYLYSINEKGEFGNNGSIGMAQAQLLEDLSKQVKFVQSEGENI
                     ISLKVAYPEKIDNKIIFVGKVYE"
     gene            4082..>4652
                     /locus_tag="RJ285_001607"
     CDS             4082..>4652
                     /locus_tag="RJ285_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384341.1"
                     /translation="MNKTLIFHENSHIDLNASFAPGTYIELQLEKESDKTLNWSYVEC
                     NSEKKMRSLLDVDCRSIEAKDLKFIASFKGNICGFHLPISRDNEPIKDIKDYKYYIIV
                     FAYDEKKAIPSLEDFHIVIDMSFRVGVGRDEDVKESKLRNDFNSDIIQTNCIFSVLEA
                     VEFLKACQSFKEKAKETNNYEFFKNYPQLA"
BASE COUNT         1913 a          514 c          739 g         1486 t
ORIGIN      
        1 ataaaaagga ggtggttgag ggacattata atattaatat cagcgataaa atgcaagtat
       61 taagcgagaa agagatggat tataaaagca aagacaatat tctttttaca agtaatgaat
      121 ccataggatt tgaaagtgat aaaaatacaa gcatggtagc tgataatatc acaactattc
      181 atgagttaaa agccgatagc gaagcgacta tacaggtagg agaaacaatt attaatgcaa
      241 aacctgattg tgttatcatt aaagcaggtg gagtagaagt aattatagac tctaatggac
      301 ttgtggttaa aggtggagag cttaaagcag agtaaaggat aaacaataaa aaaacctttt
      361 tacaaactta aaagatttta tataccttgt ggtgtgctta tagctttgat tatttttata
      421 agcttaactt atcatttttt acaacgacct ttagagctta tcttttggga tagatattat
      481 tatgaaaaag aatatcaaaa tgctaaagat atgtataaac tatttaaaag taatgaagaa
      541 gaatttaaaa aagtttttaa agagcaaaac ttaaatgaag aattaaaaac aaatcaaaaa
      601 gaattgttaa attatatgca tcatttcaaa agagattcta attttatgca aattttaggt
      661 ttggataatg cttatcttaa agctcttaga gataagacaa gtatatttgg aagaaaaagt
      721 gaaaataatc ttaattattt ttatcttgct tctaatagca ctactaattt agatgaaatg
      781 aataatttta taagcattat agataaatat atcattttta tcaataaaat agatacattg
      841 cctgacactt atacactcat gaaaatagcc tttaacgctg attattttct ttttaatctc
      901 gtcccatttg cttcaagcct agataaaaac tttatttgct ctataccgca aaaagaacaa
      961 ttattagaaa atatgataaa ttcttatgaa aaaatggatt tattatacaa aacaaaacta
     1021 aaaaccgaaa ttcaagaaat gatataccca gcgatatatg caacaaaaaa acttaatcat
     1081 ttcatagata ttgccaaagg aagattaaat gcatgtggaa aataatttaa gtcctgaaga
     1141 tagacaaggt atagaaaatt accttattat tttaaatacg ataagttttc taggcgattt
     1201 gaatataaaa tataacaatc ataatgcaaa gattaaaaat tattctagtg gttattgtaa
     1261 gtattattgt aaaatagctt agattttagg attataaatg aaaaaacttt tttatagact
     1321 taatttttta tttaatacaa aattaaaaaa attaacttgg attgtagcta tattatttat
     1381 cggatataaa ttactttttt ataccgaaat taaaaatggt tatgtaaaag tgactttacg
     1441 tcctatagta acacttaatc aagagggtta ttgcataaaa gaaggtagaa gattaagcca
     1501 aaatgaatta tttgaaagag ctactaaaga ttggcttgaa aaactttata accaagcaca
     1561 tgatccacta gttatgaatg cagatggaga ttggcttgat atcactaatt gctattattc
     1621 aagcaaagaa aaagcaaaga aaggtttaaa ttgtcaattt tacagcaacg gcaaacaatt
     1681 tggtatcgat gatattgcaa aacaaattaa tcttaataaa agccaagaag aaaatatgca
     1741 aaaaataatg caaggcttta gcattgtaag accttttgag gaggaaaaaa ttttaacaga
     1801 tgatttagag cttaaatatt ctttactctt acaagatagg ttaggtgatt ttacttttat
     1861 gccttatgat attagattta ttgtcgttgg tggtgatact ggttattatt caaaatttgg
     1921 ttattctgtt tttgctttaa tgatacaaaa atattttatt ggaaacgacc atgactttaa
     1981 atttaaaaaa ggcactgtag aatattggaa aaataaagat aataaaaaca atcatgaata
     2041 catatattat cccattacaa attgtggcga agttgaaatg cgttatgact ttgatcctcc
     2101 tggattatat tatcaattat ttcatgatat gcaatggagg gatgaatggc atcgttaaat
     2161 ttaaaaggcg attatggagt agaaatttta tcctattatc tttgggggca aagcacaccg
     2221 ccaagtgatt tagccagaaa agataaccgt gtgcttatag gtaaagatta tcaagcaaga
     2281 gatgaaaaag aaataatcat acaagcttca gcacttgatt atatgaaata tgtagataga
     2341 tataccaatg ctacaaattt tgggatattt caaaattttt tcaaaagtgt ttttagtgaa
     2401 aaagaacttg gggaatttaa agataaaata gaaaatgaaa catatatttt agaattagac
     2461 gatatcataa aaactaaggt atatggaggt gtaaatccgt ttcttgatga agataataag
     2521 aataaagata aaagcactaa agataaagaa aataatgaag aaaataaata cgaaaaatac
     2581 gatgaaaata aaatggcagt tagaataatt cattattatt tagatacaaa ttcaggcaat
     2641 tatgctaaaa gagcttttgc ttttggaagc acaagtatag catttaataa agatgtaaaa
     2701 tttcatatta gtgctaaaac ttatgaacct gtttgtattt ccaatctaaa actttatcct
     2761 ttaaaggata attttgattt tgaaagtgat agcagtcttg cagaatttgt aaatttcttt
     2821 ctagaaaagg aattagatcc cttaaaaata ggtagaacgg ttaatattca ttttatagat
     2881 caagaaaaga ttacacctat ggttatttat aaaagagtat ttcaaatact tcaaaaccaa
     2941 tcttttaatt ctttaactcc ttctataact tcacttcgtg aatattataa aacccgtatc
     3001 ctgccatctg gggtattata tttgcaagat gacaatacaa actctcaaac caatttagaa
     3061 cagactatcc tctacaacaa tacaagtttt aacaaaattt caaaagaacc cttaaataaa
     3121 tcctcatcca gtgctaaaaa accttgcttt atcactttat atttaaaaga tgaacacaat
     3181 aaacccattg ctaatgctaa aatcattatc aaaggtttta aacatgatga agctttaaga
     3241 gtagttaatc taaaaagacg cagtgatgaa aagggtaaaa taaaatttga taaagaaaag
     3301 tattttagtg attgttatag ctttaaagta aagcttgatg aaagtgaagc ttattttcct
     3361 actcctttac aaaatgctaa aaggatattt aataattata cccatcacaa agttggactc
     3421 atacttaaat ttaaagcaaa aggtcattta gtttatgatg gatttaatct ctatcattat
     3481 aaaggaaatg aattaattaa ttcttatatg gcaagaagtg gtactgctaa ggcagataat
     3541 gaaaaaagaa gtaaaaagca aattgcaaat tatttttacc aagatgaaaa agatacaagt
     3601 aaaggtaaaa aagcttattt ttattatgat gatgaaagta ttaaagatag atttggcact
     3661 ttgcctgaag gagaatatta tttaaagatt aatgaaatag ctaaagatac taaccctagc
     3721 tttttaaaag attatccctt tgaaatagga aaaacttggg gaaaatgttg tgtaagatta
     3781 tataccaata aagaatgttc taaaactttt aaagaattaa aaataaaaga aagtaatgaa
     3841 aaagaaaata aaaaaagcaa aaaagaacaa agtataataa aagataatct atatctttac
     3901 tctatcaatg aaaagggaga atttggcaat aatggtagca taggtatggc acaagcacag
     3961 ttattagagg atttaagtaa gcaggttaag tttgtgcaga gtgaggggga aaatataatc
     4021 tcactcaaag tggcttaccc tgaaaaaata gataataaaa ttatatttgt aggaaaagtt
     4081 tatgaataaa acactaatat ttcatgaaaa ttcccatatt gatttaaatg cttcttttgc
     4141 accagggact tatatagaat tgcaattaga aaaagaaagc gataaaacgc taaattggag
     4201 ttatgtagag tgcaatagtg agaaaaaaat gcgatctttg ttggatgttg attgtcgttc
     4261 tattgaggct aaagatctta aatttatagc gagttttaaa ggtaatattt gtggatttca
     4321 tttacctata agtagagata atgaaccaat aaaagatata aaagattata aatattacat
     4381 catagtcttt gcttatgatg aaaaaaaggc tatacctagt ttagaagatt ttcatatagt
     4441 tatagatatg agctttagag taggagttgg aagggatgag gatgtaaaag aaagcaaact
     4501 aaggaatgat tttaatagtg atataattca aacaaattgt atttttagtg ttcttgaggc
     4561 tgtagagttt ttaaaagctt gccaaagttt taaagaaaaa gcaaaagaaa caaataatta
     4621 tgaatttttt aaaaattatc cccaacttgc ag
//
LOCUS       DAPIWU010000116         4649 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.118, whole genome shotgun sequence.
ACCESSION   DAPIWU010000116 DAPIWU010000000
VERSION     DAPIWU010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4649
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.118"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..609)
                     /locus_tag="RJ285_001608"
     CDS             complement(<1..609)
                     /locus_tag="RJ285_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDV7384342.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILKQKPYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKNNISYIF"
     gene            complement(602..1312)
                     /locus_tag="RJ285_001609"
     CDS             complement(602..1312)
                     /locus_tag="RJ285_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7384343.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKKNASKIISILEELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(1309..2103)
                     /locus_tag="RJ285_001610"
     CDS             complement(1309..2103)
                     /locus_tag="RJ285_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7384344.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLAPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKVVFIGAWWIILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2090..3034)
                     /locus_tag="RJ285_001611"
     CDS             complement(2090..3034)
                     /locus_tag="RJ285_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7384345.1"
                     /translation="MLKRLVFSIVVAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLATFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3034..4569)
                     /locus_tag="RJ285_001612"
     CDS             complement(3034..4569)
                     /locus_tag="RJ285_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7384346.1"
                     /translation="MLRFLIFAMLLFVNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDEHMSLKPDLAASWNVSKDGLSYDIFLREDVLWHDGVKFSADDVK
                     FSLEAFKNPKNNSSIYVNFEDIKSIEILNPYHLKITLSKPFPAFLDALSIGMLPKHLL
                     SDKDLNTASFNQNPIGTGPYKFVKWKKGEYVEFKANENFYLTKVKTPRLIIKHIFDPS
                     VASVELKNGKIDAALIDVSLLNIFKKDENFKILRERSADYRALMFNLENEFLKDIQIR
                     KALNYAIDKQSIVKNLLHDYGFVANHPLERSWADSKAFKTYEYNPKKAQDLILALGFK
                     KNDEGIFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKARTLGHHGVGFTWNVYE
                     WSK"
BASE COUNT         1849 a          828 c          505 g         1467 t
ORIGIN      
        1 aaatatataa gaaatattat ttttttgctg atagtcatat aaaaaagtta aaatttcttt
       61 agaagtttta atatcaagtg ctgaagtaat ttcatctaaa atcaacaatt taggatttaa
      121 aaccaaagca cggataagac ctacacgcgt ggcttctcct ccacttaact catagggttt
      181 ttgttttaaa atttgctttt ttagactaaa aaaatcaaaa aattctaaaa tcaagtcatc
      241 attcttttgt aaattaaaat tttccaaacc atcttgtata agatttttga tttttttata
      301 agggtttaaa gccatttttt gatcttgaaa gcaatactga atttgctttc ttaaaagtct
      361 ttgtttgttt ttatcaagct tgtgcaagtt aagattttca taccatacct caccttcact
      421 tggatcttct aaaaaacaaa gaattctagc taatgtgctt ttacctgcac cacttttacc
      481 taaaattatt aaattgtcat tttcatttaa agaaaaattg acattatcaa aaataatatg
      541 tctttctttt tttaaatacc aatgcttttt aagctcataa aacttactta aattacaaac
      601 tttaagcatt ataatacctt aaaaactcat ctaagctata taaatttgaa ctattttttt
      661 ctagcataag aatttcatct gctaaagaat ttaccaaatt taaatcatga gtgatacaaa
      721 ctaaggctgt agtatttttt aattcttcta aaatcgatat gatctttgaa gcgttttttt
      781 tatccaaaga agctgtgatt tcatcacaaa ttaaaatttg gggttgattt aataatgcca
      841 aagctaggct cacccttctt gccataccca aacttaattc attagcataa gaatgccaca
      901 aacgatcaag attttcaaat cctaattttt gaaaataaga aaaagcgtaa tcttttcttt
      961 ctttttgttt taattttgta tgagttttta aaacaagatg acataaattt ccaatatcca
     1021 aataaggata aagactaagc tctgcatctt gcaaaacaag tgccacctta gaacgaaaat
     1081 ttctaagctc ttctttgtta aaattaaaaa tacaagaatt atgaaaactt aattcatcaa
     1141 aacttattgt gaaattagaa tctaaaagtc ttaccaaagc ttttcccaac aaacttttac
     1201 ccactccact ttgtcctagt atcattaaag ttttgcctgt ttttatatct aaattaatat
     1261 ccttaagcaa taaattattc ttcaaactga tatttaaatt tcttaccttc aagatcttat
     1321 accccaaatt ttttgtaaaa aattacccaa ccataaaaga ggtaaaaaca acaaaagcaa
     1381 gcttaaaagt ggaaaaagta ttatccacca agcacctata aaaactactt ttgaagactc
     1441 actcaaaaga gtacctaaag ttggaatttc aaatcctaaa cccagtccaa aaaaactcaa
     1501 agtagcttct gtggctatag catgaacgat attaaatata aaaagtgtaa aaatcagtgt
     1561 ttttaaagca ggtattaaat ctttaaaaaa agctctaaat ttagttcttc caagcactat
     1621 atttgctttg taaaaatcta aattttcaag tctttttaat tcactttcta taattcttgc
     1681 tatgaaacac caatgaatta aagcgattaa aaaaatcatc aaaaacacat cagaagttat
     1741 catactttga aaaaacatca taagtaaaaa agcaggcaag gctaaaaaaa actctaaaat
     1801 acgcatccaa aaaacgtaaa aaaaacatcg cgctaaaaac aaatagcaca aagcaaagat
     1861 aatagacaat aaagatccac caacacctat aatcaaagaa tttctcaaag caaaaagcaa
     1921 acgagaaaac aaatctctgc ctaaaaaatc agtccctaaa atataagtaa aattaggagc
     1981 ttgatgcaaa ttttctaaat gagtgcttaa aatatcaaaa ggagccaaaa aaggtgcaaa
     2041 caaggcgcat aaaaacaaaa aaattaaagg cgcaagaatg ataagaaatt taaacaaaat
     2101 caagccttct taatctagga tttaaaatcc tagctacaat atcacttaaa aatgtaaaaa
     2161 atgttgcaag caaaacgcta aaaaatataa gtgcaagtac aacaggataa tctttaaaaa
     2221 taatactttt aaaaagtaaa gacccaagcc cctcgtaagc aaagacactt tctaccacat
     2281 aagttcccat cataaaactt aaagcacttc ccccaaaata agccacaata ggacttaaag
     2341 aatatttcaa aactaaaaaa taaatatctt tctcccttaa agctctagcg tataaatttt
     2401 gaataaaaat ttgagaaaaa ctttcattga taaaatttct agcaatcctt aaaaataacg
     2461 ccaaatgtga taaaacgagc accaaaacag gcaaaatcaa atgctctaaa cgatttaaaa
     2521 aatcatcttc aaagcctata tcactacttc ccataacagg caaaattttc caaaaaattc
     2581 caaaaatcaa aacaaacaat aaagccaaaa caaaaggagg taaagcaaaa aaattaaaag
     2641 ctaaaaaagt gatgatttta tctataaaac tttctttata ataatatccc aaaagtgcca
     2701 aaaaaacact gagtaaaaat aaaagcatta aggcactaaa acccaaaata aaagtattaa
     2761 aaattctttc ttttataagc tttaaaacac tttctccact taaaaaagaa actcctaaat
     2821 ctccttttaa agccttaaaa agccaaattt tatactgctc tagcaaaggc ttatcaagcc
     2881 ctaaattttg ttctattctt tgaacaaatt ctttactttg tgaattaact ccattagcat
     2941 aagctatact gcctttacta aaatgaagta aaacaaaaca taaaaaagtg ctaaaaaatg
     3001 ctacgacaat actaaaaact aagcgtttta gcactattta ctccactcat aaacattcca
     3061 agtaaaaccc actccgtgat gacctaaagt ccttgctttg atacctttta aatctttatt
     3121 ataaactaaa gcaaaatcaa gataggctaa aaaaataaaa ggaggatttt catacaaagc
     3181 atctataaaa tctttataat atttttttct ctcttccaaa tttgaagtgt ttcttgcttt
     3241 ttgcaaggct atatccactt ttttatcatg ataatgtcca aaattccaac cctcatcatt
     3301 taaagcacta tcttgcgaac tttcaaatac cctaaaagtg tgaaaatcag gatctaaagg
     3361 acttccccag cctattaaaa aactatctac tttagaataa tcaaaacttc cagcaggttt
     3421 agccaccacc ttgcttacaa ctcctatttt tctaaattcg ctttgcaaaa ttccagccaa
     3481 acttaccctt aaaggatcat tactcatcgc ccaaatttca aattctaaaa tcttgccatc
     3541 tttttcaaaa ataccctcat cgtttttctt aaaacctaaa gccaaaatca aatcttgggc
     3601 ttttttagga ttgtattcat aagttttaaa agctttagaa tccgcccaag aacgctctaa
     3661 aggatgattg gctacaaaac cataatcatg caaaagattt ttgactatac tttgcttatc
     3721 aatagcataa tttaaagcct ttcttatttg aatatctttt aaaaattcat tctctaaatt
     3781 aaacattaaa gctctataat cagcagatct ttcacgcaaa attttaaaat tttcatcctt
     3841 tttaaaaata ttcaataaag aaacatcaat caaagccgca tcaattttgc catttttaag
     3901 ctctacgctt gcaaccgaag gatcaaaaat atgtttgatg ataagtcttg gggtttttac
     3961 ttttgtaaga taaaaattct cattagcttt aaactctaca tattcgccct ttttccattt
     4021 tacaaattta taaggacctg tgcctatggg attttgatta aaagaagcag tatttaagtc
     4081 tttatcacta agtaaatgtt taggaagcat tcctatactt aaagcatcta aaaatgcagg
     4141 aaaaggttta gaaagcgtga ttttaagatg ataaggattt aaaatttcta tacttttaat
     4201 atcttcaaaa ttcacataaa tagaagaatt atttttagga tttttaaaag cttcaagact
     4261 gaatttaaca tcatcggcac taaatttcac tccatcgtgc cacaaaacat cttcacgcaa
     4321 aaagatatca tagctaagtc catccttgct aacattccac gacgcagcta aatcaggctt
     4381 taagctcata tgctcatcaa aacgcgtaag tcctgaaaat acaagattaa tcactgcatc
     4441 gtgatcctca ctataagcag gatttatcct tgcgatttca ttttcaactg ctataataag
     4501 tgtatctttt gggatttttg cttctaaatt cacaaacaac aacattgcaa aaattaaaaa
     4561 tctcaacata aaaaaccttt ttattttaat aacgcacaaa attataaaac aaaaaaactc
     4621 aactcgcaag cctatacggg ggataaagt
//
LOCUS       DAPIWU010000117         4216 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.119, whole genome shotgun sequence.
ACCESSION   DAPIWU010000117 DAPIWU010000000
VERSION     DAPIWU010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4216
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.119"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..355
                     /locus_tag="RJ285_001613"
     CDS             <1..355
                     /locus_tag="RJ285_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDV7384347.1"
                     /translation="AELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLTQIPVE
                     ILGKEPKSKDLQKLITLMKNKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDW
                     ENELLKTADAFSHNL"
     gene            368..1222
                     /locus_tag="RJ285_001614"
     CDS             368..1222
                     /locus_tag="RJ285_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDV7384348.1"
                     /translation="MLFFEISNLNYAYNNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQKKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            1215..2018
                     /locus_tag="RJ285_001615"
     CDS             1215..2018
                     /locus_tag="RJ285_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDV7384349.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKRYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKKLGFI
                     MVLASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLMHLIGKFLKR"
     gene            complement(2007..3344)
                     /locus_tag="RJ285_001616"
     CDS             complement(2007..3344)
                     /locus_tag="RJ285_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HDV7384350.1"
                     /translation="MKTSNTFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNEN
                     LLGFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYEL
                     DNISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFL
                     DEFDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAP
                     NRLIKSTLNFLKSKTSLNKFRLIKSMQILDEVEFSKNYEKDFSYKISRHFDYYENLLL
                     WCKIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLI
                     SKNDENCFMLKPDLYIENKMILDTKWKIPNDSEDEKKQGIEQSDLYQMFAYACKFKIY
                     DIKLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVCFAPLPF"
     gene            complement(3344..>4216)
                     /locus_tag="RJ285_001617"
     CDS             complement(3344..>4216)
                     /locus_tag="RJ285_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7384351.1"
                     /translation="FELPNTKYSIQYRNGKTFRIKFDDMSKNHKDYPVSIDNIEKLYK
                     TSNIDEIYNSAYVRAILNYLKLQGLEDYKEKDEKVNLPYIIIIDEINRGNVSKIFGEL
                     ITLIEASKRIGEKEELKVTLPYSGKEFGVPKNVYIIGTMNTADRSITSLDTALRRRFE
                     FIEMMPDVSKLSMDCEGINLQELLKAINTRIEYLLDREKTIGHAFFISVENLEDLKKV
                     FKNKIIPLLQEYFYNDYALIDAVLNKNGMLEISVENKDYLKNMTEFIESDKIVYKFSD
                     SNNWSKDTFIKIYE"
BASE COUNT         1402 a          621 c          556 g         1637 t
ORIGIN      
        1 agcagaatta gatagtttaa atttacaaat tgcctcaaaa ttagaaaaat taaaaaatag
       61 agaatttgta gtttatcatc cttcttggac atattttgca aaacgctata atcttacgca
      121 aattcctgta gaaattttag gcaaggaacc aaaaagcaaa gatttgcaaa aacttatcac
      181 tctaatgaaa aataaaaatt taaaagtcat ttttgttcaa aatggtttcc ctgaaaatgc
      241 agcaaaaaca cttgctaaag aatgtgatgc aaaaatttac aaaatagatc atttatctta
      301 tgattgggaa aatgagcttt taaaaactgc tgatgccttt tctcataatt tataatcagg
      361 ttttttgatg cttttttttg aaatttctaa tctaaactac gcttataata atgaaatcat
      421 cttaaaaaac atcaatctta gctatgacaa taaagacttt ctctctatca taggtccaaa
      481 tggcgcagga aaatcaacac tcgtaaaact tatcttagga cttttaaaat ccaaaaatga
      541 aatccatttc aaagctcttc aaaaaaaaga aataggctat gttcctcaac acactctagc
      601 caatcctaat ttttgtccaa gagtacttga aatcgttctt atgggacttg taagtaaaaa
      661 aatttttggt ttttatggga aaaaagataa agaaaaagct atgcaagctt taaaaagtgt
      721 aggaatggaa aaattttgga acaaaaccat tgattctcta agtggaggac aaaggcaacg
      781 tgtttttatc gcaagagcct tagctagtga atgcaaaatg cttattttag atgaacctac
      841 cgcaagcgtt gataacaagt ctgctataca aatttttgaa cttctaagct ctttgcacca
      901 aaaaggcatg ggaattttac tcatttgtca cgatatcaac cttgtattag cttatagcga
      961 taaaattgca catttaaaca aagaactttt cttgcatact aacactaaag aaaaagaaaa
     1021 aagttcattt ttaaaacatt tatacgaaaa tcactctcat ttttgtgatg tagaaatgag
     1081 tttaaatact tgtttttgcg atgaaaaaaa ttgcgatagc aaaaaactat gcgaacaaga
     1141 atttacaaga agaaatttga aaaaaacaga atttaaaaaa gaaaattttt gtttaaaatt
     1201 ttcaaaggaa aataatgctt gaaattttaa atttcacctt ttttcaaaac gctttactag
     1261 gagcgatttt agtcagtata gcttgtggga tcataggtac tttggtgatg ataaatcgcc
     1321 ttttttctat ggctggaggt ataacacatg gggcttttgg tggtataggt atagcttttt
     1381 atttctcttt gcctatttta ttaagcacgg gaatatttac tttatttttg gcttttttag
     1441 tagctttttt agctaaacgc tatgaacaca gaagtgatag tattatcgct gtaatctggg
     1501 cttttggaat ggctgttggg attattttaa tcgatttaag ccctagttat aacacagatt
     1561 taatggctta tctttttggg agcattttag ctgtagggac gcaagattta tggcttatgg
     1621 ctttggttga tagcgtggtg gtgcttttga tctttttatt ttatagacaa tttgaagcat
     1681 taagctttga tgcggaattt gcaaaagttc gtggtatcaa tacaagtttt tttcattatc
     1741 ttttaatcgc ccttatggct ttttgtatag ttatttctat acgccttgta gggcttattt
     1801 tggttatggc tttacttagt atcccaagct ttattgctga aaatttcacc aaaaaacttg
     1861 gctttatcat ggttttagca agttttttaa gtatgatttt ttgtgtttta ggacttatac
     1921 ttagctatta tcttaacctc tcaagcggtg cttgtatcat agctgtagct tgttttggtt
     1981 ttttaatgca tttgataggc aaatttttaa aaaggtaaag gtgcaaaaca cacttgcact
     2041 tttatatctt tttgcccttg ttctttaaaa tacaaatgtt cgcttgcctt aaaaacaaaa
     2101 aatttttctg cgatttttct ttgtaaatct tgagtttttt cacataaagg atacacaagt
     2161 ttaatatcat aaattttaaa tttgcaagca taagcaaaca tttgatacaa atcgctttgt
     2221 tctataccct gttttttctc atcttcacta tcatttggaa ttttccattt ggtatctagg
     2281 atcattttat tttctatata taaatcaggc tttaacatga aacaattttc atcatttttt
     2341 gagattaaat actttccatt gttttgaact ttaatatctt gagctggatt tacttttttt
     2401 agcatataag ctacataatc ttcaaaaatt ttctccatag gaaaaagcaa agcaaaagct
     2461 tcatttttac catgataagg cataaaactt tcatttttta agaaaatttt acaccacaaa
     2521 agcaagtttt cataataatc aaaatgtctt gaaattttat aactaaaatc tttttcataa
     2581 tttttagaaa attctacctc atcgagaatt tgcatagatt ttataagtct aaatttattc
     2641 aaacttgttt ttgattttaa aaaatttagc gttgatttta tcaaacgatt gggtgctata
     2701 tctaaaacaa actcatcatt gcttgtaaaa aatctttctt tgtgtatcaa atttcgcttg
     2761 atatgctcgt taaatagtaa ttttcccttt aaaaaagccc tattttcttc gcaacttaga
     2821 taagatctca tcaagccttt tttatatacg ctatcaaatt catctaaaaa catagtgata
     2881 aacacttcaa ataaaggaat tttagaactt tgcaaagatg aaatttgcga ttttttaaag
     2941 ggggagtttt ttaaggtttt tagcatattt atcaaaagat ttttaggatt aaatttaaaa
     3001 tctttttcat aaaaatcatt atttttagaa atattgtcta attcataaca tcttcttagt
     3061 ttttctttgt catgatttga agaactatct tcttttttat aactatctaa attcgtgcat
     3121 tttggcaaaa tctccaaaac cccgctttta gtctgtataa tgccgacata atttttagct
     3181 tttaaggaat ttttgttttt aaagcctaga agattttcat tattttttgc aaagtcttct
     3241 agctctttat aaaacccttc ggccttttct ttgaaaattt cttttaaatc ttctttagaa
     3301 aaagcttggt attcgatgat ggaaaaagta ttacttgttt tcattattca tatattttta
     3361 taaaagtatc tttactccaa ttattactat cactaaattt ataaacaatc ttatcgcttt
     3421 ctataaattc tgtcatattt tttaaataat ctttattttc aacactaatt tccaacatac
     3481 catttttatt taaaactgcg tcaatcaaag catagtcatt gtaaaaatac tcttgcaaaa
     3541 gtgggatgat tttattttta aaaacctttt ttaaatcttc taaattttca acacttataa
     3601 aaaatgcatg acctatggtt ttttctctat ctagtaaata ttctatacga gtgtttatag
     3661 cttttaataa ttcttgtaaa ttaatacctt cacaatccat agataatttg ctcacatcag
     3721 gcatcatctc aataaattca aatcttcttc ttaaagctgt atcaagagaa gttatgcttc
     3781 tatcggctgt attcatagtg cctatgatat aaacattttt aggtactcca aattctttgc
     3841 cactataagg caaagtcact tttaactctt ctttttcacc tatccttttg ctagcttcta
     3901 tcaaggttat aagctcacca aaaatcttac ttacattacc acgattgatt tcatcgatga
     3961 tgattatata aggtaaattt actttttcat ctttttcttt gtaatcttct aaaccctgca
     4021 attttaaata atttaatata gctctaacat atgctgaatt atatatttca tctatattag
     4081 aagttttata taatttttct atattatcta tacttactgg ataatcttta tgatttttac
     4141 tcatatcatc aaatttaatt ctaaatgttt ttccatttct atattgaata gaatatttag
     4201 tatttggtaa ttcaaa
//
LOCUS       DAPIWU010000118         4214 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.120, whole genome shotgun sequence.
ACCESSION   DAPIWU010000118 DAPIWU010000000
VERSION     DAPIWU010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4214
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.120"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            163..765
                     /locus_tag="RJ285_001618"
     CDS             163..765
                     /locus_tag="RJ285_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7384352.1"
                     /translation="MKRNEHNIALIKNPNFNALIDTGFLDTIDTLKEKLHIHKTDFKD
                     ITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTLLKLKNIE
                     FINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIPKPKIAIK
                     FDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIEPKFLD"
     gene            853..1071
                     /gene="infA"
                     /locus_tag="RJ285_001619"
     CDS             853..1071
                     /gene="infA"
                     /locus_tag="RJ285_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDV7384353.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1243..1356
                     /gene="rpmJ"
                     /locus_tag="RJ285_001620"
     CDS             1243..1356
                     /gene="rpmJ"
                     /locus_tag="RJ285_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDV7384354.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1359..1724
                     /gene="rpsM"
                     /locus_tag="RJ285_001621"
     CDS             1359..1724
                     /gene="rpsM"
                     /locus_tag="RJ285_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDV7384355.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1734..2126
                     /gene="rpsK"
                     /locus_tag="RJ285_001622"
     CDS             1734..2126
                     /gene="rpsK"
                     /locus_tag="RJ285_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDV7384356.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2154..2780
                     /gene="rpsD"
                     /locus_tag="RJ285_001623"
     CDS             2154..2780
                     /gene="rpsD"
                     /locus_tag="RJ285_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDV7384357.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2793..3806
                     /locus_tag="RJ285_001624"
     CDS             2793..3806
                     /locus_tag="RJ285_001624"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDV7384358.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDTYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3810..4163
                     /gene="rplQ"
                     /locus_tag="RJ285_001625"
     CDS             3810..4163
                     /gene="rplQ"
                     /locus_tag="RJ285_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDV7384359.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
BASE COUNT         1689 a          592 c          756 g         1177 t
ORIGIN      
        1 aatctttatt ttttagaaga aaaaaccaca agcaaaagtt caaatcaaac ccatataatc
       61 tctcttaaac aatctgatga tgaattttta aatttattat tttctttttt agtgccacaa
      121 agcgatgaag ataagaattt tatagaaaaa actcgcacaa aaatcaaaag aaatgagcat
      181 aatattgctc tgataaaaaa tccaaatttt aatgctttaa tagacacagg gtttttagat
      241 actattgata cattaaaaga aaaattacat atccacaaaa ccgattttaa agatatcact
      301 catattatct taacacacgc gcatcctgat catataggtg ctttaatgag cgaagaaaat
      361 ctttttccaa aagctcaaat tttaatcgat aaaaaagaat atgatttttg gatcaaaagc
      421 gatagacaag aaattaaaaa caccttgctt aaacttaaaa atatagaatt tattaaccac
      481 tctaaagatt taatctttca aaattcaggc attaaagcca tacctgctta tggacatacc
      541 ccaggacaaa atgctataat aattgatgat aaaatagtct tttggggaga tttacttcat
      601 ctttatgata tacaaattcc aaaacctaaa atcgctataa aatttgatat agatcaaaat
      661 gaggctatac aaacaaggga aaaactactt aaagaattta aagaaagaaa actcaaagtt
      721 atagggactc atgtgccttt tatcgaacct aaatttttag attaattact taaaaattac
      781 taaaaattaa gtaaaaattt taataatttt tgctaaaatt atagcctttt tatttcatga
      841 aaggagaaaa ttttggcaaa agatgatgta attgaaattg atggcaccgt acttgaagca
      901 ttgcctaatg caaatttcaa ggttgaactt gacaacaaac atgtaatttt atgtcatatt
      961 gcaggaaaaa tgcgtatgca ttatataaga ataatgccag gtgataaagt aaaagtagaa
     1021 cttacacctt atagccttga taaagggcgt ataactttta gatataaata atctaagtta
     1081 tttaaaagct aattttagat aaaattagag tttttgcgac aaattacatc gaactatatg
     1141 aagaagtatt tttaaaatcc accacttatt ttgaaaatag ttggttattc ataaaacctg
     1201 atgtagtcgt aaatcaagtg gaattcattc aaggagacgc tcatgaaagt gagaccatcg
     1261 gttaaaaaga tgtgcgacaa gtgcaaagta gttcgccgta aaggcgtggt tcgcattatt
     1321 tgcgaaaatc caaaacataa acaaagacaa ggataaacat ggctcgtatt gcaggtgtgg
     1381 atttaccaaa gaaaaaaaga attgagtatg gactaaccta tatttatggt ataggacttt
     1441 tcacttcaag aaaaattcta gataaagtag gaatttctta tgataaaaga gttcatgagt
     1501 taagtgaaga tgaagcagca gctatccgta aagaaattca agaaaactat atggttgaag
     1561 gggacttgag aaaacaagtt gctatggata ttaaagcgct tatggattta ggaagcttta
     1621 gaggtttaag acacagaaaa gggttaccag ttcgcggaca aaaaacaaaa acaaacgcaa
     1681 gaactagaaa aggtaagaga aaaactgttg gtgcaaaatc ataaggataa atcatggcaa
     1741 aaagaaaaat cgtaaagaaa aaagtagtta aaaaaaatat agcaaaaggt attgtttata
     1801 tcagtgcgac ttttaacaat actatggtta cagtaactga tgaaatggga aatgctatcg
     1861 cttggagtag tgcaggtggt ttaggattta aaggttctaa aaaatcaact ccttatgcag
     1921 cacaacaagc agtagaagac gctttaaata aagcaaaaga acacggaatt aaagaagtag
     1981 gcattaaagt acaaggacca ggaagcggta gagaaactgc tgttaagagt gtaggtgcta
     2041 tggaaggaat caaagtaact ttcttaaaag atatcactcc attagctcac aatggttgca
     2101 gaccgcctaa gcgtcgtcgt gtctaagata taagaaaaat ttaggagaat attatggcaa
     2161 gatatagagg accagtagaa aaattagaaa gacgctttgg tgttagctta gcattaaaag
     2221 gagaaagaag actagctggc aaaagtgcac tagataaacg cccttatgca ccaggacaac
     2281 acggagcaag aaaaggtaaa attagtgagt atggacttca attaagagaa aaacaaaaag
     2341 ctaaatttat gtatggagta agcgaaaagc aattccgtcg tttatttgct gaagcagcaa
     2401 gaagagaagg aaatacaggg gtattactta tccaactttt agaacaaaga ttagacaatg
     2461 tagtatatag aatgggtttt gctacaacac gtcgttttgc aagacaactt gtaacacatg
     2521 gacatgtttt agtaaatggt aaaagagtgg atattcctag ctttagagta gaagcaggtg
     2581 ctaaaatcga aattatcgaa aaaagcaaaa acaatcctca aattacaaga gctatcgaac
     2641 ttacagcaca aactggaatc gttgcttggg ttgatgttga aaaagataag agatttggaa
     2701 ttttcacaag aaaacctgaa agagaagaag ttgtcattcc ggttgaggaa agatttatcg
     2761 ttgagcttta ctctaaataa taggggctaa atatgagaaa tattacaaca tctgcttata
     2821 cgccaacaga atttacaata gaaaacatta gtgatactgt ggctaaaatc agtgcttggc
     2881 cttttgagat cggctatgga atcaccctag cccatccttt acgccgttta ctttacacta
     2941 gcaccatagg atatgctcca actgcgattc atattgatgg cgtagctcat gaatttgata
     3001 gcatgcgtgg tatgcttgaa gatgtagcac tttttatcat taatctaaaa aaactacgct
     3061 ttaaaattaa aggcgaatca aataaagaaa tagtagaatt tagctttaaa ggctcaaaag
     3121 aaatttacgg caaagatcta aataatgatc aagtagaggt agtaaacaaa gacacctatc
     3181 tagcaactat caacgaagat gctgaactca aattcacatt gatcgttgaa aaaggtattg
     3241 gctatgtacc aagcgaagaa attaaagagc ttataaatga tcctaaattt atagctttag
     3301 atgctttctt tacacctgta agagaagcaa cctatgatat tgaaaaagtt ttgtttgaag
     3361 ataatcctga ttatgaaaaa gtggttttaa ctgtaacaac tgatggacaa atcactccaa
     3421 atgaagcttt tcaaaatgct ctagaagcta tgtataaaca attatcagta tttgataaaa
     3481 tcaccaatgt tagaagcgta attaaaaatc aagcaacaag caatgaacta gaaaatacta
     3541 aattattgca aaacattaca gatttaaatt taagtgctag aagttataat tgtcttgaaa
     3601 aagcaggagt agtttacata ggcgagcttg ctttgatgag tgtaagtgaa cttgcagggc
     3661 ttaaaaattt aggtaaaaaa tctcttgatg aaattaaaaa catcatggaa agtataggtt
     3721 ttcctgtggg aacttctaag cttagcgata ataaagaaat acttaaaaat aaaatcgcag
     3781 aattaaaagc acaaaacgaa ggataaagaa tgagacataa acatggatat agaaaacttg
     3841 gcagaacttc atctcatcgt gctgccttat taaaaaattt aactatagct ttagtaaata
     3901 gcggaaaaat cgaaactact ctaccaaaag ctaaagaatt aagaggttat gtagaaagat
     3961 tgattactag agcaagactt ggagatttta acgctcatag agcagttttt gcttcattac
     4021 aagataaaaa cgctactaat aaattagtga ctgaaattgc tccaaaattc aaagatcgca
     4081 atggtggata tacaagaatc atcaaaacaa gaattcgccg tggtgatgct gctgaaatgg
     4141 ctttcatcga atttgtagct taatcaaatc ctagcttttg ctaggattaa tacttcaatt
     4201 aaatacctta aaaa
//
LOCUS       DAPIWU010000119         4199 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.121, whole genome shotgun sequence.
ACCESSION   DAPIWU010000119 DAPIWU010000000
VERSION     DAPIWU010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4199
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.121"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            5..391
                     /locus_tag="RJ285_001626"
     CDS             5..391
                     /locus_tag="RJ285_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDV7384360.1"
                     /translation="MLSLSLNADIIISADNLPNVSKEFLQHNFKAPIGIVQKDKNSYE
                     VYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKSEFPNTKAREIERKINH
                     YKIKLDNDIKILIDFNGTILYKEFDD"
     gene            complement(400..2016)
                     /locus_tag="RJ285_001627"
     CDS             complement(400..2016)
                     /locus_tag="RJ285_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HDV7384361.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(2020..3270)
                     /gene="mtaB"
                     /locus_tag="RJ285_001628"
     CDS             complement(2020..3270)
                     /gene="mtaB"
                     /locus_tag="RJ285_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HDV7384362.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(3267..>4199)
                     /locus_tag="RJ285_001629"
     CDS             complement(3267..>4199)
                     /locus_tag="RJ285_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDV7384363.1"
                     /translation="EIKVQSLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTAT
                     KIINFININIIFLILLFAYIENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGG
                     SFRVGDRVKVFQNDTTYIGDIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVF
                     TNLLANYTHHGMKTVLDGIDISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARL
                     QHEYSIKNPKVEPRFFMFFEHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDI
                     KIAYPSQNLYLGNLNQNHFEQHHENMYFHARNKD"
BASE COUNT         1428 a          771 c          464 g         1536 t
ORIGIN      
        1 tactatttta agtttatctt taaatgctga tataataatt tctgctgata atttaccaaa
       61 tgtttctaaa gaatttttac aacataattt caaagcgcct atagggatcg tgcaaaaaga
      121 caaaaattcc tatgaagtct atcttagcga tggaacagag cttgaatttg atatagatgg
      181 agcttggaag gaaattgaaa ataaagcctt tccttttgat ctagattttt tacctcaaaa
      241 tttagccaat atcatcaaaa gcgaatttcc aaatacaaaa gctagagaaa ttgaaagaaa
      301 aatcaaccat tataagatta aacttgataa cgatataaaa attcttatag attttaatgg
      361 aactatctta tataaagaat ttgatgatta aacatatcat caaacctgca ttatatcttt
      421 aacatcgtca tattctatct tttctttttc aagcaaaagc tctgataatt ttaaaatttt
      481 atccttcata gaatttaaaa attcatccat ttcttttttt tgttcactta aatttgactc
      541 tttcaacata tcaaaactca acatataatc aagcaattct ttaatcttta aaaaatcatc
      601 ttgcgagtta gtataacttt cattgtaaat caatctcatg gctctagaac cagccaaata
      661 aacttttata cgattgataa gctctgattt tgatcttata ttatgctcat attctttaaa
      721 acgatcttca atgagagtga ttttttcaaa tcctatgtca aaataatacg cactcaaagc
      781 ttttgcagct tgataagtgg cttgaatttt cttctcttca tcattaaaac ttaaaatctt
      841 tttcttacct aaaagaactt tatttaatac agcataaaaa tcgctttcct caactaaagc
      901 actatttctt cttaaagcat taattgctgc ttcattgacc aaagtttcaa gccctgctcc
      961 actaaaacct acgcttgctt tagcgatttt atttaaattg atattattgt ttttatcttt
     1021 catataaatt tctaaaattt taagtctatc cttaaaatca ggcaaagata aaaaaattct
     1081 cctatcaaaa cgccccgaac gcaataaagc aggatccata agttcgattt tatttgtcgc
     1141 agctataaca ataaccccac tattatcctc aaaaccatcc atttgagtta aaagttgatt
     1201 taaagtgcta tctctttcaa catttgacat ttctcctctt gccttaccta cggcatctat
     1261 ttcatcaata aaaactatgc taggcgccat cattttagct tttgaaaaaa gctctctaac
     1321 tctttttgca cccataccta cataaatttc aacaaaactt gaaccacttt gataaaaaaa
     1381 tggcacccct gcttctcctg caactgcttt tgctatcaat gtttttccta caccaggtgg
     1441 gcctaccatt aaaacacctt ttggcatttt tacaccaaat tctttatatt ttttaggatt
     1501 ttgtaaaaaa tccacaagtt cgcttagctc cattttaact tcatcaacac ctgctacatc
     1561 attaaaagta atatttgaaa tcacaggttt tatatgggaa ctttctaaat ttatatttga
     1621 attttgagct tgagtgtgat tttgattctt atttgatatt ggatatttag ccaactcttt
     1681 tttacgagca aaataaccaa gacttataaa aagtgcgata ataaaaataa gtaaaacaaa
     1741 aaacacccaa agcgtattat cttttttaac ctctacggga acttttgata aaagtgtttt
     1801 tatatctatg ccatctttta taattacgta attttcacct tctgccttaa gccaaatttc
     1861 gtctttatca atcacagctt tttggattaa attttggctt aatagacttt gataaagatt
     1921 ttcatctata tatttaggtt catttttaaa atataaaatt cccaaaagca tacataaaac
     1981 cataaaagat gctaaaatta tctttttatt tttcattatc tagcctttta aatttgtaaa
     2041 gttagacttt tcttgtactt catattcaga tataacgatc cattctttag ctatatcttt
     2101 atcactttta attttgatct tattaaaaaa ctgatcataa ccctcaaaaa aaccatcttt
     2161 ttgattttct accaaaactt caagtgaaac ttgatttttt ttcctaaatt cataattatt
     2221 tttttctact atggatttta aagtgtttag cctttcttta gctaaagttc catttatcac
     2281 atctttcatg gtagcagaat gcgtgttgtt tctagggcta aaaataaaag catggatatg
     2341 agtgagtgga aattctttaa aatttcttaa agcttcttgc catagctctt cactctcgcc
     2401 tggatgagct actataaaat ccgtccctaa agcatatcct ttgcttgcta tagtattaaa
     2461 aagctttaaa tcattatccg tatgtgatct tcttctcatt atacgaagca ttttttcact
     2521 tgtatgttgc aatgcaatat gtaaatgcct ttcaagccaa gcttcatcta agatttctaa
     2581 aaaactttca tcaagctgtg caggttctaa actacctagc cttatgcgtt ttatacctaa
     2641 aatttgtccc attttttgca aaagcttgcc tagggttgtg ccatttttaa gcccatatga
     2701 acctatatta gtccctgtta aaacaatttc actataacca ttagctccca aaatttcaac
     2761 ctgttttaaa agagcttttt catccacact tcttgatttt cccctcacgc taggaataat
     2821 acaataagaa caagcaaaat cacaaccttc ttgaattttc acaaaagctt tggtatgatt
     2881 ttcatactca caaactatat ctttatcaat aaaatttaaa tttccaagtt cataaaaact
     2941 tgtctttgct cctaaaaatt cattgatttt atctttattt gacgctccaa gcactccaaa
     3001 aacttgcttt ttatctaaaa gctccttacc tttgcttaca gcaccacaac ctgtaagtat
     3061 aactttaatg cctttttttt gcatggtatt tacataagac tttatcccgc tatcagctcc
     3121 atttgtaacc gtgcaagaat ttacaacgat aatttgtgct ttattctcat catttataat
     3181 ctcataatct tttacataac tttttaaaag ctctgtatca taaatatttg tgcgacaccc
     3241 aaaggtttta aaaaaaactt tttctttcaa tccttattcc ttgcatgaaa atacatattt
     3301 tcatgatgtt gttcaaaatg attttgattt aaatttccta aatataaatt ttgcgatgga
     3361 taagcaattt ttatatcttt atgcttatta aattctttta taatctcttt gctaatcgta
     3421 cttcttaata ccaaagccgc ataagcatta gtcatatacc atgcagaaat tctcattccc
     3481 caatgttcaa aaaacataaa aaaccttggc tccactttag gatttttaat actatattca
     3541 tgttgtaaac gagctatatt ttttctagca agctcagtat aacctttggc atggcgtgta
     3601 acaatatttt ccacaatttc ttgagctttg tcaagattgc tatcaaaagt aacacttata
     3661 tcaatgccat caagcacggt tttcatacca tgatgggtat aattagcaag caaatttgta
     3721 aaaacatagt tattaggaat aaatataata cgcccactac gacgattttt attataagtt
     3781 tcaagcgtaa gctcttcata aagagtaatg cgtaaaaaag aaatgtctat aatatctcct
     3841 atataggtag tatcattttg aaaaactttt acacgatccc ctactctaaa acttccgcca
     3901 aaaataatca cacaccatcc aagcatagac ataaacatat ctttcatagc aatagctaag
     3961 cccgcagagg caaaaccaag tatagttaca agataagtaa tattttctat ataagcaaag
     4021 agcaaaataa gaaaaataat atttatatta ataaaattaa taatcttcgt agcagtataa
     4081 tatctttcac tatctttaat gtatttttta gcaataaatt tcaacataaa agctatagct
     4141 ataacaataa caatagcaac aagtatattt acagccctta agctttgaac tttaatctc
//
LOCUS       DAPIWU010000120         4143 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.122, whole genome shotgun sequence.
ACCESSION   DAPIWU010000120 DAPIWU010000000
VERSION     DAPIWU010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4143)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.122"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(2..1222)
                     /locus_tag="RJ285_001630"
     CDS             complement(2..1222)
                     /locus_tag="RJ285_001630"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDV7384364.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(1216..2040)
                     /gene="galU"
                     /locus_tag="RJ285_001631"
     CDS             complement(1216..2040)
                     /gene="galU"
                     /locus_tag="RJ285_001631"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDV7384365.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2122..4095)
                     /gene="acs"
                     /locus_tag="RJ285_001632"
     CDS             complement(2122..4095)
                     /gene="acs"
                     /locus_tag="RJ285_001632"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HDV7384366.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQALEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITIIGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPDLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1319 a          853 c          544 g         1427 t
ORIGIN      
        1 attaagaatt taatatattt tttaagatca actttccaac ttccacacca ggttgatcat
       61 aagtgttaat ccctagcata acaccgcaag ttgaagtaaa aagttcataa taatacatca
      121 aatatcccgc atgccaagca tcaagttttt caagttctat cacatcaaca ctcaaatttt
      181 cagcgattaa agcgtgcata gttgcatcac attgagcgtt taaaagttcg tgaagattga
      241 ctttattact taaagaatct aaaaatttaa aatgaatatc aggaataata ggtgcttttt
      301 gagcgtcttt gatttttaaa aaagttacag ttttattttt aggtccatcc ataatgagtt
      361 gtaaaaaact atgctgatct cttgctccaa tgagtgcaat aggagttaaa cctatacgtt
      421 tatagccttg ctttttacct aaactttcag caataagctg gatataccat tcattaaagc
      481 ctttaaaagc atcactatat gaaaaaagta cattgatatt ggcatttttg tgtgtgcaat
      541 aatgataggc tttttgtaaa atttcatctt ttttatgagt aaaaaaatct tcaaaacaag
      601 ctttagctcc ttctaaaaga gctttggcat tatagccaca aaaacaaagc ggaactatac
      661 ctacggctga aagtatgcta aaacgacctc ctacatttgc agggataaaa aagcatttaa
      721 tacctaaatt ttcaccttct tgatgaagtt ttgaatcctt atcggtaata aaaacaaagt
      781 atttttttaa ttcttgcata tcaagtttaa aatgttcaat aagaagttta aaaagcgata
      841 caacttctat agtactacct gttttgctga tgattaaaaa caaactttcc tcaagcttga
      901 ttttttctaa agtcttatta aaagaatgtg aacttgtgtt atcgagtata aaaagttctc
      961 tttggttgct tttttcatta aaaagcatat cacgcaaggc ttttacacca caacttgaac
     1021 cacccattcc cactaaaacg atatttttta tgtgttcttt gtctttgata aaagccaaac
     1081 tctcatcgat taaattcaaa cttgtatcaa taagatgata ataccctata tctccacttt
     1141 ttacctcatc attaatacga tttgcataag aacttatagt gtgaatttca ctttgcttaa
     1201 aaaaaagtgt attgtttaac atttactttt ctcgtaaaaa taatttgtcg cttctacaaa
     1261 gccttctaca cttccacaat caaagcgttt tccttgaaat ttataagcta aaaccatacc
     1321 attagttgct tgagttaaaa gcgcgtcggt aagttggact tcaccatttt ttcccgcttt
     1381 agtattttct aaaattccaa aaatatcagg agttaaaata tatcttccta tgatagcaag
     1441 attacttgga gcttcatcag gacttggttt ttctatcata gaattaacca tgataagatt
     1501 ttcttctaca aaatttccag aaattactcc atagtttgaa acttgctctt ttggtacttc
     1561 catcacagct atgatggtgc agcgatattt ttcataaatt tttaccattt gagccataac
     1621 atttaagcct tcttcattaa cacacaaatc atcagccaaa attacgccaa aagcttcatc
     1681 gccaaccaaa ggtctacctt ttaaaaccgc atcacctaag cctttcattt gattttgtct
     1741 tgtaaaagta aaggtacaac gattgatcaa agagcgaatt tcatcaagta agtattcttt
     1801 ttttgtacct gaaatttgat gttcaagttc ataagaaata tcaaaataat cctccaaagc
     1861 tctttttcca cgccctgtga caaatcccat attttccatt cctgcttcta aagcttcatc
     1921 aactccataa tggatcaaag gcttggttaa gataggtaac atctctttag gtaaagtttt
     1981 tgttgcaggt aaaaatctcg tcccataacc tgccgcaggg aaaatacaag tttgaagcat
     2041 aaaaatttcc ttttattttt ttatcattat agcttatttt tatgaatttt catgcaacta
     2101 ggcaaagttc tttttacctt gttattcaaa ctctgcctta gctaatttaa caatggtttc
     2161 tactacttta gaatcttcaa gtgttgaaat atcctgtttg atttcttcac ctcttgctat
     2221 agttcttaaa attcttctca ttattttacc acttctagtt tttggcaaat ctggagtata
     2281 aagaattttt tctattttag ctataggtcc tatttctact cttaaaatgt cattaagttc
     2341 ttttaaagtt tctatagctc cgccaagatc acaactggat gcaggactta aaaccacaaa
     2401 agcaaacaat gactcgccct taatcgtatc caaaatactc actacagctg attctgctac
     2461 acttggatgt ttagcaatag cgctttcaat ttcagccgtt cctatacgat gtcctgcaac
     2521 attaaccaca tcatctgttc ttcctatgat ggtaatataa ccatttttat cataaaaagc
     2581 accatcgcca ctaaaatata cagcttttcc atctttttta gcttgagaaa aataactttc
     2641 tatatagcgt tcatcattgc cccaaattcc acgaatcatc gaaggccaag gtttagttat
     2701 acaaagcaac ccatcttcac cttcatcttt tttattgcct tcttcatcaa taacttctgc
     2761 aaaaatccct ggcaaaggca aggtggcaca acctggtttt aaaggagtgg cgcctggtaa
     2821 aggcgtgatc atatgcccac ctgtttctgt ttgccaccaa gtatcgacta taggactttt
     2881 agttccccct atttcatcat aaaaccactt ccaagcacta ggattgatag gctctccaac
     2941 cgttccaagc acttcaagcg tacttaaatc atattttctt ggctcattag gtgcatcagc
     3001 atgaagcatt cttatggcag tcggcgaagt gtagaatttg cttatttgat actcttctat
     3061 cattctccac caacgcccag aatttggata agtaggagtt ccttcatgca ttatagtcgt
     3121 tgctccacat gctaaaggcc cataaactac ataagtatgt cctgtaatcc aacccacatc
     3181 agcactacac caataattat cataatcttt aatatcaaaa acccattcca tagtcatttg
     3241 tgcccaaagt atatatcctg cacttgcatg cataactcct tttggcttgc ctgttgatcc
     3301 tgaagtgtaa agcaaaaaca acaaatcctc actatccata atttcgggtt cacacttata
     3361 agactcattt ttcacaagtt cgttataaac atagtccctt cctttaatat attctatagg
     3421 ctcattattg cgtataacta taagtacttt ttctacactt tcacaccctt cacttaaagc
     3481 cttatctact gcaggtttta acatataagg tttgccacga cgaaaagcac catcagccgt
     3541 tactacaagt ttagctcctg catctataat tctatctctt aaggcttcag gagaaaaccc
     3601 tccaaatact acactatgaa tagccccaat ccttgcgcaa gctaacatta ctatagctgt
     3661 ttctggaatc ataggcatat aaattacaac cctatcgcct ttttttactc cgaatttttt
     3721 aagcaaattg gccgccttgc aagtttcatg caataatctt ctataagtat aaacttcata
     3781 atcccccatt tcaccttcaa aaatcaaagc agctttattg cgtcttgttt tcatatgacg
     3841 atcaagacat tgataactta catttaaagt tccaccttca aaccatttat aaaatggagc
     3901 tttatcctca tttaacactc ttgaaaaagg cgaaaaccac tcgatcttct caagtgcttg
     3961 tcttttccaa aaaccttcaa aatcttcctt ggcttcatcg cataaatcat agtattcaca
     4021 taaatttttt atacgagcat tacgagaaaa ttctttactt ggcttaaaaa gctcttgatt
     4081 attttgatta agcataaaaa ctcctttatg gttattttta aacattatat aagagtttat
     4141 ttg
//
LOCUS       DAPIWU010000121         4043 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.123, whole genome shotgun sequence.
ACCESSION   DAPIWU010000121 DAPIWU010000000
VERSION     DAPIWU010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4043
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.123"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            345..563
                     /locus_tag="RJ285_001633"
     CDS             345..563
                     /locus_tag="RJ285_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDV7384367.1"
                     /translation="MLLNIIIEKDQDGYFARILELEGCVSQGNTYEETLANIKEAGEL
                     YLESLANEEKRIIENKTTSIIPMVLANA"
     gene            556..759
                     /locus_tag="RJ285_001634"
     CDS             556..759
                     /locus_tag="RJ285_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDV7384368.1"
                     /translation="MPELPRMTAKEAEKLLLQNNFLIDRQKGSHRIYKKGLYRMVIPH
                     HIGEILHPKIIKQLFEIIEVAKD"
     gene            763..2556
                     /locus_tag="RJ285_001635"
     CDS             763..2556
                     /locus_tag="RJ285_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7384369.1"
                     /translation="MPKRNTIDTITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEV
                     GKSFLALKVCANAINDGLKPFFWSVEDKNKAILGRIKNIESFYSFNTAELEFSNELPK
                     INKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKS
                     NNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNN
                     INAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVT
                     MNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANDSSYVISLKNSLLTQTHRN
                     ILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTE
                     ISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYI
                     KKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRFYK
                     ESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFHNKYKNENDLFFIYESN
                     NRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD"
     gene            complement(2679..3293)
                     /locus_tag="RJ285_001636"
     CDS             complement(2679..3293)
                     /locus_tag="RJ285_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDV7384370.1"
                     /translation="MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIHLDEILEVKISST
                     KSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMEL
                     SNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKD
                     IDKIQTLLDKDLSIKSIWKLLYKDNGKSYDGLLWFIKKRKLKGS"
     gene            complement(3290..3667)
                     /locus_tag="RJ285_001637"
     CDS             complement(3290..3667)
                     /locus_tag="RJ285_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vapd"
                     /protein_id="HDV7384371.1"
                     /translation="MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQ
                     YSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKD
                     FHQKLKEFTEKTPKNQKLKDLER"
     gene            complement(3658..3981)
                     /locus_tag="RJ285_001638"
     CDS             complement(3658..3981)
                     /locus_tag="RJ285_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384372.1"
                     /translation="MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKI
                     NKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEG
                     EGIWE"
BASE COUNT         1465 a          527 c          537 g         1514 t
ORIGIN      
        1 atttaatgaa tttaagaatt taggaattat tacatttaag tcaattgttt ttttaaagtt
       61 cttattttcc atatattctt ttcgtaaaaa tgtcaaaaat tattacattt aagtcaaaaa
      121 ttattacatt taagtcaatt ttatttgaaa ataagaggag tatttaataa tttttgttga
      181 ctttaatgta agtgtatatt acatttaagt caattttatt tgaaaaaatt ctaaaattgc
      241 tacctattga catagatgtg atactttggt ataatttatt tcgaagatta aaatatttgg
      301 ttacatttaa gtcaatctta tcatttttta atacaaggaa ttagatgcta ttaaatatta
      361 ttattgaaaa agatcaggat ggatattttg cacgcattct agagcttgaa ggttgcgttt
      421 cgcaaggaaa tacctatgaa gaaactttag ctaatataaa agaagctggg gagctttatt
      481 tagaaagcct tgcaaatgaa gaaaaaagaa ttattgaaaa caaaacaact tcaattattc
      541 caatggtttt agcaaatgcc tgaattgcct agaatgactg caaaagaagc ggaaaagctt
      601 ttattgcaaa ataatttttt gattgatagg caaaaaggca gtcatagaat ctataaaaaa
      661 ggactttata gaatggttat tcctcatcat attggagaaa tattgcaccc taaaatcata
      721 aaacaactat ttgagatcat agaagtagca aaggattaaa aaatgccaaa aagaaatact
      781 attgatacta ttacactcgg actttttagt gatgaagatg tttctataat ctgcgaagat
      841 acaattaaac tggaaagggg ctctgtagct gtattaagtg gcaatagtga agtaggcaag
      901 tcttttttag ctttaaaggt atgtgctaat gctattaatg atggcttaaa accttttttt
      961 tggagtgtag aagataaaaa taaagcaatt ttaggacgca taaaaaatat tgaaagtttt
     1021 tattctttta atactgcgga acttgaattt tcgaatgaac ttccaaaaat caataaagaa
     1081 cctataaatt gcttaaaaga agaacttaat gagttagcag attgcgattt aattgttctt
     1141 gataccttta gtgcattttt ctcaacatta ggctttaaag atcaaaacaa tcaaaacgat
     1201 gtgcaaaatt tctttaatat tctaacagat atagcaaaat caaataatca agctatctta
     1261 ttacttcatc acttagacaa aaaaggcgaa agtcttatgg gtagctctgt tattatcaat
     1321 gctcctagac ttgtttataa actttcgttc gaaaagggag aagataaaaa ttctaccacc
     1381 tatcgcttgc ttgaggtgct aaaggataat aataatatca atgctggaga atttcaaaaa
     1441 acgattaaag tattgcaaaa ttctagtatt gatgagcctt caattgtaaa tcttagagct
     1501 aacagcattg attctaatac tttagagatt atcaataaaa aagatatttc tgctgtaagt
     1561 gttaatgaat tagcaaaagg ctatgtaaca atgaatgaaa atagaggtgt tttttattta
     1621 agctcacgaa agcttacaga cactaatttt tataaagtat ttaaagaaaa tgataataaa
     1681 atagatttta aaatgacagg tgcgaatgac tcatcatatg tcataagttt aaagaactct
     1741 ttgcttacgc aaacgcatag gaatatttta gatgctttat ttttatatat caaaaaaaat
     1801 gtggatacaa gtgttattaa aaaatatcaa gaaaattttt gggatatgga agtaagatta
     1861 gagccttata aattcttgaa acaatatctt aataaaaatt ctaataatta ctcttggttg
     1921 aaacaaaaat ttacagaaat ctctcgtttt gcgtatgatt tggctttcac tcaaaatgta
     1981 gaagataaag ataaaaaaac aatcactcaa agagataaag gtattttaat gtttgactct
     2041 gtagagcgta tcacaaaaga aaatggaaca attgtatctg tattcgtgct aacagttcgt
     2101 agagaatata ttaaaaaact cgaaacagaa tctacccttt cttatgatga tgatttatcc
     2161 aaaattctta ttaatttaaa ttctttggtg gcacaagatt tgattagatt tttaacaagt
     2221 tttcctgata agaaaattct tagttatagt gagttttgtg aaattaaagc ttatagattt
     2281 tataaagaaa gttctattat ttcgaaacaa aagaaagaga ttgttaaatt aaaagataaa
     2341 cttatagaat ttggaattaa tgtttatggc aaaggcgtag aatttgctaa ttatgatgat
     2401 gaattttttc ataataagta taaaaatgaa aatgatttat ttttcatcta tgaaagcaat
     2461 aatagagtaa aaagatatat taagcgtagt gatccaatga atcaattaaa caccaaaagc
     2521 aataaatttc ttttgcaaaa atctttattt gattaacatt tacaatcaag gagtgttgta
     2581 tgaatgaatg ggaattagaa agacaaagac aaataagata gacaaattga gcgttttatt
     2641 ttattacaaa attttttata tttttcttaa atgaaaattt agcttccttt taattttcgt
     2701 tttttgataa accacaatag accatcatag ctttttccat tatctttgta taataacttc
     2761 caaatacttt taatagataa atctttatca agcaaggttt gtattttatc tatatcctta
     2821 tcataaatac tatttaatga gcctttaggg cgtcccagtt tttttccact agctctagca
     2881 ttttctagtc ctgctttagt tctttgactt atcaaatctc tttcattttc tgctaagtaa
     2941 gcataaaccg ataagattaa tttagaagca ggattattaa aattactaag ttccatttgt
     3001 cttaaaaata agaatttaat attattagaa ttaaattcaa gcactaaatt aattatttct
     3061 aacatacttc taccaagtct tgaaagttct gttgctatta ataaatcacc tgcttttagt
     3121 ttttgtttta aatccttgat ttttcttttc tcttgagatt ttgtagaact tatttttact
     3181 tccaaaattt catccaaatg aatattgttt ttatgacaat attccataat ttctaacttt
     3241 tgagagtcta attcttgttt atttgttgat actcttatgt atgctatatt catcgttcta
     3301 aatcttttaa cttttgattt tttggtgttt tttcagtaaa ttctttaagt ttttgatgaa
     3361 aatctttagc acataagtct tgtatagtct cttttaagct atactgctct cctatttcag
     3421 taatatcaaa ctctttaaca cattcgccaa gccaagtaaa ttttttagtg agcttattaa
     3481 ctattcttat aactcgtctt tcatttattg gctcttttga agtataacct gaatattgtc
     3541 tatgctcgaa accattttca agcataaatt ttttaatcaa agaataaggt tctcttgtat
     3601 ctttgaaata tttttcaaga ctttttgtag ataaatcaaa attaattgct ttgcgattta
     3661 ttcccaaatt ccttctcctt cagctttact tgcagaaatt aaatcgctat ttccttcttt
     3721 ttcactaatc caaatccatt cttttgcatt ttttgtaaac cattcagaat caatcaaata
     3781 tttatatata aataaagtca tacaacctaa atcatactta tcccctttac aatgataagt
     3841 ttctttatta atttttatca ttcctgattc tttagcatat tcatctatca ttttatacat
     3901 atcttctaaa ttatatttgc cttcttttaa aatcttttct tcatctaata ctattcttgt
     3961 acctaaaagt gggtatgcca tttttttatc ctttcatcaa aaacctaaca aattctagta
     4021 aaaaatagct aatacttaaa taa
//
LOCUS       DAPIWU010000122         3813 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.124, whole genome shotgun sequence.
ACCESSION   DAPIWU010000122 DAPIWU010000000
VERSION     DAPIWU010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3813
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.124"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            5..871
                     /locus_tag="RJ285_001639"
     CDS             5..871
                     /locus_tag="RJ285_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDV7384373.1"
                     /translation="MEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFDGILFE
                     RLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISEHFLAP
                     ILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLEINFWQ
                     DDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLNIFLEL
                     DRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRKNYNFN
                     RALEKFEKIFKS"
     gene            951..2819
                     /gene="rpoD"
                     /locus_tag="RJ285_001640"
     CDS             951..2819
                     /gene="rpoD"
                     /locus_tag="RJ285_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDV7384374.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2835..3347)
                     /locus_tag="RJ285_001641"
     CDS             complement(2835..3347)
                     /locus_tag="RJ285_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDV7384375.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(3344..>3813)
                     /locus_tag="RJ285_001642"
     CDS             complement(3344..>3813)
                     /locus_tag="RJ285_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HDV7384376.1"
                     /translation="SYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQ
                     FGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMG
                     FYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFMCGYILAKIKEVK"
BASE COUNT         1638 a          553 c          547 g         1075 t
ORIGIN      
        1 agatatggaa atatttttag atcttttaaa cactcaaagt ccaactcata cagccaacaa
       61 tttttccata actcaaccta atgtttcaat agtaattaaa aatttagaaa ataaatttga
      121 tggcatttta tttgaaagac ttggaaaaaa actcttacct acaccaaaag ctttagaact
      181 aggaaaaaat tggttaaaaa ttatacaagc ctactaccaa agcttagaaa aattaaacga
      241 cgaaagtatg ctcttagggg aaataaaaat agcctcaact caaagcattt ctgaacattt
      301 tttagctcct attttatttg attttaaggc agaatttaaa aacatagaaa ttcgctctca
      361 aacgcagaat tcaaaagaat gtttaaattt actaaaaaac ggaaatatag aatttgcaat
      421 cattgaagca gaacttgatc cagctttagt ggagtatgaa aatttagaaa taaatttttg
      481 gcaagatgat gaacttatag tagctacaag tgataaaaaa ctcaatgaaa aagaatttta
      541 tatcgatgaa cttttggaac aaaagtggat tttaagagaa gtaggctcag gcttaaggga
      601 taaattttta aacgaaattg gtgcaagctc aaaaaaactt aatatttttc ttgaacttga
      661 tagaatggct gcgattaaag aacttgtttt acaaaaaaaa gcaatctcta ttttttccaa
      721 aaaaagcata gaaaaagaat taaaaaattc aacactttat gaaattaaat taaaaaatat
      781 cgacctaaag cgtaaatttt ataccttaaa aagaaaaaat tataatttta acagagcttt
      841 agaaaaattt gaaaaaatat tcaaatcata aacataataa ccgatttata tagaaagtta
      901 agcaattttt agataaaatc caaagcttat ataaatttca aggataatca atgaacgcca
      961 aaactcaaga agctgaatta gaagaattat ttcaagaaaa tgcaaaagat tatatcacat
     1021 atgaaaaatt ggtaaaatat cttacaaaac aaccaagtgc atcaaccact aaaaaagtgc
     1081 aagcattaat gaaaaaacac aaagtgcaac ttttttcagc agctgaaatt gcacaaatga
     1141 aaaacataga agatgcaaaa agacttcaag aagaaaaaca aaaactccaa gatacaagcc
     1201 ttgagaacga atttgattta gccaatgaaa acgatttatt agaatggagc agatcagact
     1261 ctcctgttcg tatgtattta agagaaatgg gacaaattgc tttattaaac aaagatgaag
     1321 aaattgaaat ttccaaaaaa atagaacttg gcgaagatat tatcattgat gctttttgtt
     1381 ctgtacctta tttgatagat tttattttag attataaaga acctttaata aacagagaaa
     1441 gaagggtaaa agaactattt aaaagctttg acgatgaaga aaaaagtgat gataaacttg
     1501 atgaacttga tatagatgaa gatgaagaaa acgaaacaga attagaatca gatgaagaaa
     1561 atactaaaaa aaacagcaaa aaagaagatg aaagaacttt aaaagttata gaaaaattta
     1621 aagctctaga aaaagctaaa aaagattggc taaaaacatc caaagacaaa gaaagcggag
     1681 atgaactttt agataaatta agcattgcgt tcaaaaaaaa tattttaaaa gaaaaattaa
     1741 tggatctagg ccctacttca aaacttatta gcgaaatcgt aaaatcaatg gaaactgcac
     1801 taaaaagtga tgaagaattt gacaaagaac ttaagcgttt agaataccgc ttacctatgt
     1861 tttctgatga acttaaaaaa cgccatgcag atattttaaa agatattaca aaattgagca
     1921 aagaagaaat cacagagcga gctttagaaa caaccatggt aagcacttat atggaaatta
     1981 aaaaactatt tcaaactaaa gaagccagtg aaaaaagctt tgatcttgaa aaatcacgct
     2041 taaaagaaat tttggagcaa attaaacgcg gtaaaaaaat ctctgatgaa gcaaaaggaa
     2101 gaatggcaaa atcaaacttg cgccttgttg taagcatagc taaacgctac acaaatcgtg
     2161 gtctgccttt cttagacctt atccaagaag gaaatatagg tttgatgaaa gctgtggata
     2221 aatttgaata caaaaggggt tataaatttt ccacttatgc aacttggtgg atcaggcaag
     2281 ctatttcaag ggctatagct gatcaagcaa gaaccataag aattccaatc catatgatag
     2341 aaaccatcaa tcaaattaat aaaattatcc gcgaacatct acaaaaagat ggaaaagaac
     2401 ctgatgtcag tgttatagct aaagaagtag gtttaagcgt agataaggtt aaacaagtta
     2461 ttaaaatcac aaaagaacca atttctcttg aagctccaat aggaaatgaa gatgatggta
     2521 aatttggaga ttttgttgaa gatagaaatt cactttctcc aatggatcat atcttaaagg
     2581 atgatttaaa agaacaaatt gatgaagttt tagatcaatt aaacgataga gaaaaagcgg
     2641 taattcgtat gcgttttggt ttaatggatg atgaaagtga tagaacttta gaggaaattg
     2701 gaaaggaact taatgtcact cgagaaagag tgagacaaat agaaagctca gctataaaaa
     2761 aactcaaaca ccctaaagta ggaagaaaac taaaaaatta tatagaaggt tggaagtaag
     2821 agtcaatctc cttactaaaa acccagatct ttttcttctt ttaacttgcg tacatgttca
     2881 aaaaaaacta attttccgct atgttttttt aaatttttaa attccttaat atcaaattct
     2941 aaacacaaga tagaagaagt tggaaaagaa gctaaacata gcgaacttaa caactctcca
     3001 agctccatta aactaggatt atgacccact aaaaatactt cattaaactc atcatcaata
     3061 tcttgcagaa tttttagcaa attttcaaca ttgcaaagat acaatctttc atcaaaacaa
     3121 attctatttt tatcaaaatt ataaaatttg gctatttttt tcgctgtttt agcggttcta
     3181 acagcaggac ttgatagcac caaatcagga tgaatttcat gcgaagcaag atttttaaaa
     3241 agttttttta aatcttcctt tccactctta gtaagttttc tttcaaaatc atcgatgtct
     3301 tcactcttac ttgcttttgc atgtcttata atataaattt ttttcatttt acctctttta
     3361 ttttagctaa aatataacca cacataaacc cgaaaatatg accataccaa gcaacattta
     3421 cccccataag caatggcaca aaactcataa gtaaaattgc cactataagt ccttttgtgc
     3481 tatttttatc aataacagca taaaagccca ttaaaacaca aattgcacca ctagcgccta
     3541 tgacatttat attttctcca aaatatttaa aatcaaaata cacataaaaa acacttaaaa
     3601 gtgagcacaa caatccgcca ataaaataaa taaaaataaa acacaaagca cccaaataag
     3661 tttctaacat acgcccaaat tgaaacaaaa ctatcatatt taatataaga tgagttaaat
     3721 ttccatgtaa aaacattgaa cttaaaagct gccaataagc tccattaaaa aataaaatat
     3781 tcaaaccaag gatattgtaa taatcataag aaa
//
LOCUS       DAPIWU010000123         3769 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.125, whole genome shotgun sequence.
ACCESSION   DAPIWU010000123 DAPIWU010000000
VERSION     DAPIWU010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3769
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.125"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..429
                     /locus_tag="RJ285_001643"
     CDS             <1..429
                     /locus_tag="RJ285_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384377.1"
                     /translation="AFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCDLNVKDCTY
                     SFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIKPKIHRLNS
                     TDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
     gene            426..986
                     /locus_tag="RJ285_001644"
     CDS             426..986
                     /locus_tag="RJ285_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HDV7384378.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(993..1892)
                     /gene="cysM"
                     /locus_tag="RJ285_001645"
     CDS             complement(993..1892)
                     /gene="cysM"
                     /locus_tag="RJ285_001645"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HDV7384379.1"
                     /translation="MKVYEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(2019..2315)
                     /locus_tag="RJ285_001646"
     CDS             complement(2019..2315)
                     /locus_tag="RJ285_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDV7384380.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            complement(2417..>3769)
                     /gene="ciaB"
                     /locus_tag="RJ285_001647"
     CDS             complement(2417..>3769)
                     /gene="ciaB"
                     /locus_tag="RJ285_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HDV7384381.1"
                     /translation="FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEI
                     LKLEFAFENMIDQLKIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMK
                     VKSPLQVGHPLEYYEDNYTHAVALEWDIRIEDENDFDVLKFGNEIKESFEHVYKNIGL
                     EDCELEKEVLSNIEKTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFAFI
                     NFVYENAKTKPFMKISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFI
                     ANDTEKTMNQSGFFKNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISWQR
                     VDEVRPYYTEGLIHLSLLFESEVLIFENNNLKINFDLRYYEKFKELTLKNYHELAKHY
                     ALRLDAKEFLSRFCEIEDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFERYKKK
                     "
BASE COUNT         1315 a          634 c          416 g         1404 t
ORIGIN      
        1 gcttttgctt ttgttattgc tattttatat attatttttg atttttatgt aataaaagat
       61 tctcaaaaaa taacaaaaac tgatttttct accccattga cttgcgatct taatgttaaa
      121 gactgcacat atagttttaa caataaaaaa gtcttaattt ccctaaatcc caaaccctta
      181 caatctttag atgttacaaa tctaaagatt gtaaatctag gaaattataa caacttagga
      241 attaaaattt atggattaaa tatgtatatg ggcgaaatta aacctaaaat acatcgatta
      301 aattcaacag actatgaaag taaaatagtt cttgctgctt gcgttttaga tactatgcgt
      361 ttcagggtag aatttatgga taataataaa cccatagggt tttattttga ttttgagcta
      421 aaaaaatgaa aaaaaatatt attttgttta tagttatagt tgccattatt ttaggtgtaa
      481 tattttttat taaaaatcat caaaattctt atgattttat cttaaaatca gacttaaaag
      541 aggaaaccac cctaaaagat tttaaaggag ataagcttat tatctatttt ggatatactt
      601 attgccctga tgtttgtccg gcaactctta gtttagtagg caaagcctta aagcaaatca
      661 ataatcctaa ggctcacctt ctttttattt ctttagatcc aaatagagat aataacttaa
      721 gcaatacaaa cgaatggtta cgatactttt acccaaaagc agatgcctta attgcaaaag
      781 atgaaaaaac tcttcaaaaa ataacaaaac aatataatgt tcaatatcaa aaaatagatc
      841 taaatgattc ttttatgggt tattctatag cacatagcaa tatgctttat cttattgatg
      901 aaaaaggtca tttttataaa gaaattagcg atttaaatcc acaagaaatt ttaagagaac
      961 ttagaatttt tctaaattct caataattat acttaagcaa aaagatcagt tgagaggtat
     1021 ctttcagccg tatcgtttag catagttaaa attcttttat ctggaaattt ctttgctagc
     1081 atacttgcgg caaatacatt tgctccactt gatataccta ccattaaacc acttttggca
     1141 agttctttgg ctgtatttat agcatcttca ttacttactg tgatcacttc atctataact
     1201 tctttattta aaatagcagg tataaaattc gcccctattc cttgtatttt atggcttccc
     1261 gcttcacctt tgctaagcaa tggagaattt agaggctcga ctccaacaat atgcactttt
     1321 tctaattttt cttttagtat ttccccaact ccactaatag taccgccagt tccaaaacca
     1381 gctacaaaaa tatcaagttc attatccaaa tctcttaaaa tttctaaagc cgtattctta
     1441 cgatgcgcat ttttatttga aatattttca aattgagaaa ccataaaaga atttggagta
     1501 tttaataata tttcatttgc tttatcaacc gctcctttca ttcctaaatt tgcaggagtt
     1561 aattctaacc tagcgccaaa gagtgttatc atttttcttc tttctaaact catagattcg
     1621 ggcattacag caataaattt aagtcccaaa tctgcacaaa tcatagccaa agaaattcca
     1681 gtatttccac tagttgcttc aactattgta gtatcttgat taattttttt actatctaaa
     1741 gcatctttaa tcatttcaaa agctgctcta tcttttatag aatgactagg atttaaaaat
     1801 tcacatttag caaaaacatt gataccaaat tttttcaaat gtataatagg agtatttcct
     1861 ataagctcac ttactttttc atatactttc ataattttaa tatccttttt tatttaataa
     1921 tgatagtttt ataaaagttt aaaaaaataa agtaaataaa agatataaaa tatctggatc
     1981 aattaagaaa gaaggctaga atttatctag ccgaagtttt attttttctt tttgccgctt
     2041 gcttttgcaa cagcttcttt aaggttttta cctaccttaa attttgcaac tcttgtagca
     2101 ggaactttga ttgtttttcc tgtgcttggt actctagctt ctctagcagc tctttcttga
     2161 gttgaaaaag taccaaaacc aataaaactg atgctatcac ctttagctaa aacatcagta
     2221 atagtagaaa taactgcatc agtagcagta gtagcgtctt tttttgttag cccagctgtt
     2281 tgagcaacta atgaaataaa atctgcttta gtcataaaag ctcctttgtt ttaattgaaa
     2341 cgcctaattt tagcatattt aaaaaacaat atcaagtaaa aaacagcttt ttttaagttt
     2401 ttttcaaaaa actttattat tttttcttat atctttcaaa ttctccacta ttatcaattt
     2461 cattaccaat tttctcgtat aaatcataat aaaatttaac aaattcttta cacttaggca
     2521 taataggaag aaaaatatta tcttcaattt cacaaaatct acttaaaaac tcttttgcat
     2581 caagtcttaa agcatagtgt tttgccaatt catgataatt ttttaaagtt agctctttaa
     2641 atttttcata ataccttaaa tcaaaattta tcttcaaatt attattttca aaaatcaata
     2701 cttcgctttc aaaaagcaag ctaagatgaa taagtccttc cgtataataa ggtctaactt
     2761 catcaaccct ttgccaagaa ataagtccaa tagctctttt tataagttca tgaaaaacag
     2821 gcattatcaa gtcatcttgt tcatgataaa agaaatttat aagtccacct gtagtagctt
     2881 tatattcttc tatattttta aaaaaaccac tctgattcat tgttttttcg gtatcattag
     2941 caataaaaaa tatatgacca aattcatggc ctatagttga tacttcataa acccttttcc
     3001 aaattttttc ctgataaaat aaaatatttc ttccaaaatc caaaaattct ttatcaaaaa
     3061 cctcgctaga aattttcata aaaggctttg ttttagcatt ttcatataca aaatttataa
     3121 aggcaaatat ttttttgccc gccttagaac ttacaaactc atcatttgga acgacttgag
     3181 ctgagaataa acctttaagt tcagcaccat aaaatatcat cggagtgcaa atataaagtt
     3241 gagttttttc tatattagat aaaacttctt tttctaattc acaatcttca agtcctatat
     3301 ttttataaac atgttcaaaa ctttccttaa tttcattacc aaatttcaaa acatcaaaat
     3361 cattttcatc ttctattctt atatcccatt ctaatgccac cgcatgagta taattatctt
     3421 cataatattc taagggatgt cccacttgta aaggtgattt tactttcatc caagcaaatt
     3481 cagcttcttg ccaagctttt ataaccctat cttcatcttt ttcacaaaac gctaatttta
     3541 atttttcaaa atattctata taagcttttt cctcttcgct gctagcaaat attttaagct
     3601 gatcaatcat attttcaaaa gcaaattcta attttaaaat ttcattctcg aaaaatctcg
     3661 cataaggaac aaatttccat aaatttccta ttctaactaa aacaccatag cttcgctcac
     3721 aaatttctcc ttctggagtt ttttgatata aatgattttt acgtaaaaa
//
LOCUS       DAPIWU010000124         3752 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.126, whole genome shotgun sequence.
ACCESSION   DAPIWU010000124 DAPIWU010000000
VERSION     DAPIWU010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.126"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..936)
                     /gene="selD"
                     /locus_tag="RJ285_001648"
     CDS             complement(<1..936)
                     /gene="selD"
                     /locus_tag="RJ285_001648"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(886..888),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDV7384382.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSGGLLISISEKDSLEC"
     gene            complement(946..1518)
                     /gene="yedF"
                     /locus_tag="RJ285_001649"
     CDS             complement(946..1518)
                     /gene="yedF"
                     /locus_tag="RJ285_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDV7384383.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSKVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1629..3731)
                     /gene="ccaA"
                     /locus_tag="RJ285_001650"
     CDS             complement(1629..3731)
                     /gene="ccaA"
                     /locus_tag="RJ285_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HDV7384384.1"
                     /translation="MFKSLNIGLKLIFSVATVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKA
                     ISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVNKKRF"
BASE COUNT         1248 a          647 c          456 g         1401 t
ORIGIN      
        1 acattctaag gaatcttttt cacttataga aattaaaagt cctcctgaag tttgtggatc
       61 acaaagtaat aatttttctt catttaaatc aggggtaagt tcttttataa attctaaatt
      121 tttataagct ccagcaggaa ttaaacccat attaaaatac tcttttactc catctaaaaa
      181 aggaagttca ctttcaaaaa tttcaaaaga aatattttta tttagcattt cttttaaatg
      241 tcctaaaagt ccaaaacctg taacatcact catggcactt ggatgaaatt taagagcaat
      301 ttgactggct ttataattta actccatcat gtttttaagc attatatcta aatgtttttg
      361 atttaacatt tgcgccttta aagctgtact taaaattcct gttcctaaag gcttggttaa
      421 aatgatacaa tctccgattt tagaagtatt attagcaata aatttactag gatgtacttt
      481 tcctgtaaca ctaagtccaa aaaaaagctc ggtgctttct atagtatggc cacccacgac
      541 taaagcatta cattctttaa ctttatcatt tgcaccttct aaaagctctt ttaagatgtt
      601 taaatcatga ttgcaagtat caaaacctac tatatttaag gcattaatta cctctgcacc
      661 catagcaaaa acatcgctta aagcatttgc tgcagcaata gcaccaaaat gataagcact
      721 atctactata ggagtgataa aatcaagcgt ttgcaccaaa gctaaatcag gactgatttg
      781 atatacgctt gcatcttcat tatttccaat atcactaagt aaagcaggag ttttttgcat
      841 gaaatttaaa attgttttaa gaccacccgg gcttaatttc gctgctcagc ctgctgcttt
      901 aacaaaatgc gttaaatttt gatttttata ttgcagtgtt tttccttata gagtaatgat
      961 ttttgcttta ccaaaaagct cgtttaaaat ttcataagca ttgcctatat ttcctatttt
     1021 aagttctttg cttttattaa aaaattctag acaagctcca caacttatga tctcaatacc
     1081 taaattttca agttctttca tagctaaatg tgctttatga ttttcatcaa cattgattaa
     1141 aacactttca tttacgcaaa gaattttact tggagcatga tctaaatttt ttaaggtact
     1201 taaaaatcct acaagtaaat tttgtcccaa ttcaccctca cccactttgt cggtttttaa
     1261 aaataaaaca ttataatcgt gaatatttac tttactagaa tcaaaattct ttttttgtac
     1321 tttgatgcaa aactcttgtg cattttcatc tacaacaggg tttaaattta aagagttaag
     1381 aaattttaca acattatttt ttgaaataat agaatttaaa acaatttcta aaatttcatt
     1441 ttcttgaagt ttttcaagag cgttttttgt ttcaactata ggctgaggac aagatagatt
     1501 gcgacaatca attttcatta tttttccttg atattagctt tgaaaaataa tattatttta
     1561 ttacttgttt tgtgtttaaa aattttaaat aatatagaaa aaatttaaaa gctcaaaaat
     1621 gagctttttt aaaatctttt tttattcaca tcttcaagaa ttgccgcagc aatttgattg
     1681 acttcatttg ttatattatt ggtgacattt gcaacttcga cattttcctt agttacagtt
     1741 tcaagttgtg ctatagcatc gttaatctgt gtgattcctg ctgtttgttc ttttacagat
     1801 tctgctactt catttacgct ttgaacaagt atattaatat ttgcctcgat ttcagataag
     1861 gattttcctg ttctttccgc aagctgtctt acctcatctg caacaactgc aaaaccacgc
     1921 ccatgttctc cagcacgtgc agcttcaata gctgcattta aagcaagaag attcgtttgc
     1981 tcagcgatat ctttaatcac attgacaata ttttttatat catcagcttg tgaagcaacc
     2041 tcaactgttt ttccacttac attttgcata gaagaattaa tctcctccac agctgcagcc
     2101 gattgttcta aagaactcgc ttgtgcatta gagccatcag caagtttttg catagaattt
     2161 tttaactctt ctgactgatt ggctaaatct ttagcaaaat ttgaagaagc caaaagcatc
     2221 tttttaattt ctttgcctaa aatattagtt gtaatctcaa cttcaccttt agcattaaat
     2281 acttctgtac taaaatcaag agccttataa ctatcaaaaa ctctattaat ttcattcata
     2341 ttagaaccaa ttttactttg taaaacatca agcatcctat taagaacatt tttaagttct
     2401 actaattgag gatttatagg atttttagta attcttgcag ttaaattacc cttttcgatt
     2461 tctctagcag tttgcaccga ttcatctaca gcattttgat cttgttctaa agatatttga
     2521 atcttttcaa tattttcatt tatgattctt cccattgctc ctagctcatc attagcacga
     2581 atttcaatag ccttaggttc aattttttca tgatttaaaa aacggaaaaa tgattctaaa
     2641 gaactaagaa tcacaggcaa tctagatgcg acaatttttc ttacgcaata ataaaccact
     2701 cctaaaacaa caaaaataaa aataaaagat gcaccaagaa taattaattg taattttttt
     2761 aagggtttaa ataccgaata tttaggagca gttaccaaaa ctgcccaaga actatcttgc
     2821 actttaaaac tattaatcgc agcataagaa tcatcaccat cagaagctat atagttaaaa
     2881 actccatttt ttccttcact tatggcctta taagtttctt gtgcaccttt attaggattg
     2941 atatctttta aattttttaa aactagattt ttatttggat gtatcgccat aaaaccatct
     3001 gaatttaaaa gaactcttaa ttcaccatca tatttttgac ctttagggtc taaaagataa
     3061 gtagcaatat ctgaaaaatc taaagtcatg cctatgacac ctacaacttg attttttcga
     3121 tcaaaaatag gcatagcaac atttacagca tcaaaatctt gaccttctaa attcatctta
     3181 ataggacggc ctatatatac tttattttcc ccatattttg ctttttttaa tatatcttgc
     3241 acaacttgca gattagctat ttcatcacta gcttgtattg cttttattcc gcctttatta
     3301 tccttttctt catcagcgta aagcataaca aattttccac tttgagtatt aaaaaattta
     3361 ctctcttctt taaagtattc tggcggatca ataagatata aataagtaaa attagaataa
     3421 gcactattat caaaagtatt ggttataata tttgttatat tgtctatatc taaatcttct
     3481 ttagaggttg atctaaacat ttctgttaaa gtacctgaaa tacttttatt taaagcgatc
     3541 atttccccaa aaattccttg agtttgagta gcatattctt tcgtgataga agcaagaata
     3601 tcttctgtat ttttggtaat attttgactt acttgttttg tgattaatga aattaaaata
     3661 acaagtccaa taacaacaac agttgccaca gaaaaaataa gttttaaacc tatatttaaa
     3721 gatttaaaca tcttataact cctaaaaaat aa
//
LOCUS       DAPIWU010000125         3625 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.127, whole genome shotgun sequence.
ACCESSION   DAPIWU010000125 DAPIWU010000000
VERSION     DAPIWU010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.127"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..549
                     /locus_tag="RJ285_001651"
     CDS             <1..549
                     /locus_tag="RJ285_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HDV7384385.1"
                     /translation="TKPKEKLIIFASTHKDEEELLLDHFKLEENEKLIIAPRHPERFK
                     EVENLLLNKGLEFEKFSSLKDENKKFAKKILLLDALGELVNFYAISDVVVLGGSFIEG
                     IGGHNPIEVAYFDNVLISGKFIHNQKALFEEVENVYFCENLKDLNDKIHYLNLKVKIS
                     KKENLDLIIQTIQKGIDARKSL"
     gene            530..1282
                     /locus_tag="RJ285_001652"
     CDS             530..1282
                     /locus_tag="RJ285_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7384386.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKTKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKAKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLTKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            1350..2687
                     /gene="ffh"
                     /locus_tag="RJ285_001653"
     CDS             1350..2687
                     /gene="ffh"
                     /locus_tag="RJ285_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDV7384387.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKVVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIHIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            2753..2980
                     /gene="rpsP"
                     /locus_tag="RJ285_001654"
     CDS             2753..2980
                     /gene="rpsP"
                     /locus_tag="RJ285_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDV7384388.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            2983..3225
                     /locus_tag="RJ285_001655"
     CDS             2983..3225
                     /locus_tag="RJ285_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HDV7384389.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTAISAYKSKDASSYRVTVKALE"
     gene            3218..>3625
                     /gene="rimM"
                     /locus_tag="RJ285_001656"
     CDS             3218..>3625
                     /gene="rimM"
                     /locus_tag="RJ285_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HDV7384390.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNTSNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDE"
BASE COUNT         1364 a          389 c          709 g         1163 t
ORIGIN      
        1 accaagccca aagaaaaact tatcattttt gccagtactc ataaggacga agaagagctt
       61 ttgcttgatc attttaaact agaagaaaat gaaaaactca ttatcgcccc acgacaccct
      121 gagcgtttta aagaagttga aaatttgctt ttaaacaaag gtttggaatt tgaaaaattt
      181 agttctttaa aagatgaaaa taagaaattt gctaaaaaaa ttttgctttt agatgcttta
      241 ggagagcttg taaattttta tgcaatttct gatgttgttg tgcttggagg ttctttcata
      301 gaaggcatag gaggacacaa tcctatagaa gtggcatatt ttgacaatgt attaatcagt
      361 gggaaattta ttcataatca aaaggcttta tttgaagaag tagaaaatgt atatttttgc
      421 gaaaatttaa aagatttaaa tgataaaatt cattatttaa atttaaaagt taaaatttcc
      481 aaaaaagaaa atttagatct tattatacag accatacaaa agggaattga tgcaagaaaa
      541 agcttataaa ctcttagctt tgcaagaaaa aatttcaaat cgtgaagcta aagatttgat
      601 tgataagggt tgtgtttttt cacatggaaa aaaagttgtg gttgctagag ctttgatgag
      661 cgataaggca agatttaatg tgataaaaac caaaaatcct caaattattt ttgaagatga
      721 taagattatt gctattaata aaccttatgc ttatgtgagt gaagacttgg agaaaaaatt
      781 taatgccaag cttttaaatc gtttagacaa agaaacaagc ggtgtgattt tgctttgcaa
      841 agatgaagat tttagaaagc tttgtataga agaatttaaa aaacatagag tttataaaag
      901 ttatattgcg gttttagatg gggttttggc tgaagaggtt gaagtgaatg agcctatttt
      961 taccataaaa gcaaaaggcg gggcgttaag taaagtttca aaagatggtt taagtgcctt
     1021 aagcatcatt actcctatta tgatgcagtc aaaaaaaacc ttaacaaaaa tagtcattca
     1081 aacaggtaga actcatcaaa tcagagtgca tgctaaattt ataaaacatg gcgttgtagg
     1141 tgatgaaaaa tatgctaaaa tttcaagcga tagaatgtat ttacatagtt atgaaattaa
     1201 aatttttgat tattatttta aggctgagct agataatagt tttgcaaaag ttggctttga
     1261 gataaaaaat ttagattttt aaagccattt aagaaaaaat tttgtataat gcaaggttta
     1321 atttaaaaat tttatagaaa ggtgataaag tgtttgagtt agttagcgaa tcttttaaat
     1381 cagcgattaa taaattacgt tttgttgatg atgaaaaagc acttaagaac gctttagaaa
     1441 ccttaaaaaa agctctttta aaagcagatg ttcaccataa ggtaactaaa gagcttttga
     1501 ctttgataga agaagatgta aagcaaaacg gaataggtca aaaacaattt ttaaatgcca
     1561 ttaaagtaaa tttagaaaat attttaagtg tcaatggcaa aaatcaaggt tttgtttttg
     1621 cttctaaacc cccaacagta gttctaatgg caggtttgca agggggcggt aagactacaa
     1681 gcactatcaa acttgcaaat tatttaaaat tacgcaataa aaaagtttta gttgcagctt
     1741 gtgatttaca gcgtctagcg gcagtggagc agctaagaca actttgtgaa gctaatgaaa
     1801 ttgaactttt ctttatagaa aatgaaaaag atcctattag ggttgctaaa gaggctttaa
     1861 aaaaggctga aagttctatg gtggatgttt tgcttgtgga tactgctgga cgtttggcta
     1921 tagatgaggc tttgatgaat gaattaaaag tagttaagga tgttttaaat cctgatgaga
     1981 ttttctatgt tgctgatgca atgagtggtc aagatggggt taagactgcg gctagtttta
     2041 atgaagtttt aggtatcagc ggggtaattt tatcaaaatt tgatgcagat actaaaggtg
     2101 gagtagcctt aggtatagca aaacaaatcg gtattccttt aagatttatt ggtgtgggtg
     2161 aaaaagtagc agatttagaa gtttttatac cagatcgtat agtaagtcgt attatgggtg
     2221 agggtgattt ggcaacttta gctgaaaaaa ctgctgcgat tattgatgaa aaagaggcta
     2281 aaaaactcaa tcaaaaaatt aaaaaagggg agtttaattt taatgatttt cttaatcaaa
     2341 tggaaagtat taaaaaattg ggaagtatga agtctttaat cggtatgata ccaggacttg
     2401 gtggaatggc aaatgcggta aaagatatag atttggataa ttctaaagaa attatacaca
     2461 ttaaagcaat gatttcttca atgactccaa aagaaagaga aaatcctgat ttattaaata
     2521 atgctagaaa gcgtcgtata gcagagggag caggtctttc tcaggtagaa gtcaatcgtt
     2581 ttttaaaaca atttagcaat gcagcaaaac ttgcaaaaag attttcaggt aaaaaaggaa
     2641 tggagagttt gacacaaatg atgagtcaag ctagaagaca attttaaatt ttatttataa
     2701 atacttttta tagtatctat aaataaaatt tttaattttt taaggagtat aaatgacagt
     2761 tattagactt acaagaatgg gtagaaccaa aagaccattt tatcgtattg tagttacgga
     2821 cagtagaaaa cgtcgtgatg gtggttggat agaaagtatt gggtattata atcctatggt
     2881 agaacctgaa gtaattaaag ttgatgcaga gcgtttagct tattggaaaa gcgttggtgc
     2941 aaaacttagc gataaagttg cttctatcac tagcaaataa tcatggtaga gaattttctt
     3001 agagaatacg caaaattaat tgcagattat cctgaacaga ttgatactca aaaaattgaa
     3061 ttaagtgaaa atttttttga gattgttctt tttgcacata aggttgatac aggtaagctt
     3121 ataggtaaaa atggaaaaat gatcaatgct ataaaaactg caatctctgc ttataagagc
     3181 aaggatgcaa gttcttatag agtaacggta aaagcacttg agtgaaaaag attttgttca
     3241 agttgcaaaa cttggtaaaa ctgtgggtct taagggttat gtaaaattgc ataacctgag
     3301 cgacttttct tctcaattta aaaaagatgc tacttttttt ataaaaaaca ctaaagaaat
     3361 gttaaagatt aagcattata atacaagcaa ttctactgtt ttatttgaaa attatgaaga
     3421 tatagaaaag gccaaagaat taactaatct tattcttttt cagagtatcg agaaaagtag
     3481 acaaacttgt aaattaaaaa aagatgagtt tttttatttt gatattttag agtgtgaagt
     3541 ttttgaagaa gataagagat taggtaaagt ggttgatatc ttggaaactg gagcttctta
     3601 tttatttgaa attcaaagtg atgaa
//
LOCUS       DAPIWU010000126         3543 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.128, whole genome shotgun sequence.
ACCESSION   DAPIWU010000126 DAPIWU010000000
VERSION     DAPIWU010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3543
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.128"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..632)
                     /locus_tag="RJ285_001657"
     CDS             complement(<1..632)
                     /locus_tag="RJ285_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384391.1"
                     /translation="MKYRYIKWDENEKCAIFFPDIDFDIWKKTQLLENDYANPTLIIS
                     SHLKDKVGILELFEYYILLICGKSMGVSRWECNNLILLDTYSIDNISSPFYLNTPKPT
                     YISEYINVLGQLFLAGYIDFGSYCDEDRNKIDYPSNLSYYKEDKYQAWIYFRDNFFYQ
                     DKFIRDLDDPETLDEGGYSLILNDVSWDTPQYWSQYNIWIATTPKGTKYF"
     gene            complement(622..2217)
                     /locus_tag="RJ285_001658"
     CDS             complement(622..2217)
                     /locus_tag="RJ285_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384392.1"
                     /translation="MLNYSIIENSLNIKLECLSKQSLEYKDLISNTLKEQKTTQVDKK
                     QAIAKLHALLENQNLECIHGGKVILKSNKGKTFKDDGVPIMLESDLLNSSIVACPNTI
                     AGVSVPCTKVVNVKGSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHS
                     FDPKEGLGEQSKNQIELKEPIIRLHYKSDRFQKDNLPIYNLLINNEKKEQDKALNEFN
                     IDLKDLKDIEDVNIFNQFKQDFSKDYEFKELNLSFDTNLIKLYFIIPKNIAKVYKSAY
                     KEFENKDLGAGYFTQLHEYDKIIKNALEDNKELNEYHFSFLAPAKMQNLKLQIAQGLD
                     EILEDEDRKQELYVCKFVVVNGVSENNTQEIIPDNVIRIQTQDGSGEFIEIVFPSQLE
                     LNDKPLEDVSYTFVPALRGIKQFFKDTEYLKPRTLTKDEVLQIVDKLPKNVRDKRRRI
                     VENKEELDKLWKKLTKNSEEFENKVDKKYGQPIYMRKLDDQTIIQYKKTSKSGGETIE
                     INSNKPRGNLKTIHIENGIKNEI"
     gene            complement(2677..3072)
                     /locus_tag="RJ285_001659"
                     /pseudo
     CDS             complement(2677..3072)
                     /locus_tag="RJ285_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883939.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1165 a          505 c          429 g         1444 t
ORIGIN      
        1 tggaagtatt ttgtgccttt tggggttgtt gctatccaga tattgtattg tgaccaatat
       61 tgtggtgtat cccaagaaac atcatttaaa ataagactat atccaccctc gtctaatgtt
      121 tcaggatcgt ccaaatctct aataaatttg tcttgataaa agaaattatc tctaaaatat
      181 atccaagctt gatatttatc ttctttataa taagataagt ttgagggata atctatttta
      241 tttctatctt catcacaata agatccaaaa tctatataac ctgctagaaa aagttgcccc
      301 aagacattaa tatattcact tatataggta ggtttgggtg tatttaaata aaatggactg
      361 ctaatattat cgatgctgta agtatctaat aaaattaaat tattacattc ccaccttgag
      421 acacccatgc tttttccaca aataagcaaa atataatatt caaatagttc taaaataccg
      481 accttatctt ttaaatgaga tgatataatt aaagttggat tagcataatc attctctaaa
      541 agctgggttt ttttccatat atcaaaatct atatcaggaa aaaaaatagc acacttttcg
      601 ttttcatccc attttatata cctatatttc attttttatc ccattttcta tatgtattgt
      661 tttaagattt cctcttggct tattggaatt tatctctatg gtctcacccc cgcttttaga
      721 agttttctta tattgtataa tagtttgatc atctagtttt ctcatataaa tcggctgtcc
      781 gtatttttta tctactttat tttcaaactc ttcagaattt ttagttaact ttttccataa
      841 tttgtctaat tcctctttat tttcaactat tctcctgcgt ttatctcgaa cattttttgg
      901 cagtttatct actatctgca acacttcatc tttagtcaat gttctgggtt ttaaatactc
      961 agtatcttta aaaaattgct ttatccctct taaagccgga acaaatgtat aactcacatc
     1021 ttccaaaggt ttatcattga gttctaattg actaggaaat actatctcaa taaactcccc
     1081 actgccatct tgtgtttgta ttcttataac attatcaggg ataatttctt gagtattgtt
     1141 ttcactaacc ccatttacca ccacaaattt acaaacataa agctcttgtt ttctatcttc
     1201 atcttctaag atttcatcta gtccttgtgc gatttgaagt tttaaatttt gcatttttgc
     1261 aggagctaaa aaactaaaat gatattcgtt taattcttta ttatcttcta aagcattttt
     1321 gatgatttta tcatactcat gtagctgtgt aaaataccct gctcctaaat ctttattttc
     1381 aaattcctta taagcacttt tataaacttt agcaatgttt tttgggataa taaaataaag
     1441 tttgattaaa ttagtatcaa agctaagatt taattcttta aattcataat ctttactaaa
     1501 gtcttgtttg aattgattaa aaatattaac atcctctata tcttttaaat cttttaaatc
     1561 tatattaaat tcatttaaag ccttatcttg ttcttttttt tcattattga ttaaaagatt
     1621 atagataggt aaattatctt tttgaaatct atcactttta taatgaagtc ttattatagg
     1681 ttcttttaac tctatttgat ttttactttg ttctcctaag ccctctttag gatcaaagct
     1741 gtgatcaaat ttaaacttag taggagtaaa gcttactttt aaagcaaagc ctttatctgt
     1801 tttacaagct gagatgagtt cttgtaagat tacatattca ttattgactt tcttttgaga
     1861 taaggatcct tttacattaa caactttagt acaaggaaca cttacacctg ctatagtatt
     1921 aggacaagct actatactag agtttaataa atcactttct agcattatag gcacaccatc
     1981 atctttaaaa gtttttcctt tgtttgattt aagtatgact ttacctccat ggatacattc
     2041 taggttttga ttttctaaaa gagcatgaag tttagctata gcttgttttt tatctacttg
     2101 tgtggttttt tgttctttta aagtgtttga aattaagtct ttatactcta agctttgttt
     2161 gcttaaacat tctaatttga tatttaaaga attttctata atagaataat taagcaagca
     2221 aagttcatca tttttataaa agatgctaag tcttcctttg ccactgcttt catctttagg
     2281 agaaaaataa taactaggtg tatcttgttt tatagtatta tcttgatcta attctccaaa
     2341 gtaaaaagga ttattaggaa gttcatttga gcctgtaagg agggtggagt ttaggaagat
     2401 ttttatatct aaacttttaa aatctatttg atatttttct tctatgtcct ttatatccaa
     2461 aacacttcta tcttttgcaa aaatatcaca atgattatca taaatatgga tcaaatttga
     2521 catagagatg aaagaagtat tgttagaatt atcttgcaaa tcttgtaaat ttactttatc
     2581 taagaatatg atttttatat tatttgtctt taatactatg gtattggtat ttttatcata
     2641 aaattgctct atgttaaata cttcgtttaa aattaaatta acatcatttt ccttagtatt
     2701 aaagctttga ttatttagat tatcttgtaa ggaaatttct ttatttaaat agtcttggat
     2761 atcttttatt ttttcatttc ttttttcttt taaagtattg atagatttat aaagcctttt
     2821 tctagcatca agataggtat cattgagctt ttctttatct aggatgaaga tctttgtgaa
     2881 agtagaatta tagcctagat tgtttatagc ggtagcttgg gtgaaaagct cttcttgatt
     2941 ataatttata gctatggaat tttcacattg atataaggct tttaagtatg ctatggatga
     3001 atttttatct attgtgtcta tttcatcatt gtttataaaa gcaagccttg ttataaataa
     3061 ttctctatcc atttttttct aaatatttaa gataaatgaa tattatatca aatatattaa
     3121 atttttgata gtctttaaag attttcatat atcacataaa cacttgagat caatatagga
     3181 acattacaca caaaccctat aaaccaactt aattttttgc atttttctcc tgtgctataa
     3241 catttaaata aataagcttg taataaacaa ggaaatatga taaatgtgat tactaaaaaa
     3301 aacatagttg caaaggttaa aaatttaaaa taattacgca ctctatattc ttgcggtgat
     3361 aatttttcaa tttctggagg atcaagtaat acaagcgatt tataaaattc aagatcatag
     3421 ctaagataaa atatgataac aatagccata aaaaagataa taaaagatat taaaaaataa
     3481 gattttacaa attcttttat gttaatttta atccaataat ttaaaataga aaagacaaca
     3541 aga
//
LOCUS       DAPIWU010000127         3318 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.129, whole genome shotgun sequence.
ACCESSION   DAPIWU010000127 DAPIWU010000000
VERSION     DAPIWU010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3318
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.129"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..137
                     /locus_tag="RJ285_001660"
     CDS             <1..137
                     /locus_tag="RJ285_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7384393.1"
                     /translation="IENALWHLSMNKITTSKEAVSSFVENDIIETIESKIKLLIINNL
                     "
     gene            193..414
                     /locus_tag="RJ285_001661"
     CDS             193..414
                     /locus_tag="RJ285_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384394.1"
                     /translation="MVKNLIIKFGRLILDAIAAISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFVIYLVIDIRDALVNKA"
     gene            complement(439..1446)
                     /gene="pyrC"
                     /locus_tag="RJ285_001662"
     CDS             complement(439..1446)
                     /gene="pyrC"
                     /locus_tag="RJ285_001662"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HDV7384395.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRIIKACKDENFTPLMTLFFENYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFRQNSSEE
                     NLQKFLSDNACKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(1455..1682)
                     /locus_tag="RJ285_001663"
     CDS             complement(1455..1682)
                     /locus_tag="RJ285_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HDV7384396.1"
                     /translation="MKFEKLIQEILGKKRFELLKFLCENADENGFIMIKISELEEKLN
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLKI"
     gene            complement(1679..2035)
                     /locus_tag="RJ285_001664"
     CDS             complement(1679..2035)
                     /locus_tag="RJ285_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDV7384397.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIVFSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASTAVFFSV
                     LLALFVWSFILYSIYL"
     gene            complement(2032..>3318)
                     /gene="eptC"
                     /locus_tag="RJ285_001665"
     CDS             complement(2032..>3318)
                     /gene="eptC"
                     /locus_tag="RJ285_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HDV7384398.1"
                     /translation="GVLIDSDMIQNVVQTDIKEVKDLLNLKLILFIVLALLLVFYVVK
                     VKIDYYGSFKSHIKIKIINIISGLIVVCAVLIPLSKTFLPFFRNYNEIRMYNTPFYQI
                     YAVYRYYVRFVKAKPEFKTIANDAYRENNHTKKLLVLVVGETARAANYSLGGYTKNDT
                     NFYTKKDNVVFFDNFSSCGTATAVSLPCMFSISKRENYSSSEFQENAMDVLYKTGVDT
                     AWFDNNSGGCKGVCDRLAYKQKLSSDLDENLLAPFKEKLNHLSDQNIIVLHLQGSHGP
                     TYYKRYPSEFKKFTPTCDTNELSKCDSEALINTYDNTLLYTDYLLSEIIKLLKEQKSY
                     ESSLFYLSDHGESLGENDIYLHGMPYAIAPSYQTRIPAIFWSNDEKLMNLAKEHKGLK
                     LSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKLKANP"
BASE COUNT         1186 a          542 c          407 g         1183 t
ORIGIN      
        1 ctatagaaaa tgctctatgg catttaagca tgaacaaaat cacaacttct aaagaagctg
       61 taagttcttt tgttgaaaat gatattattg aaactataga atctaaaata aaacttttaa
      121 ttataaataa cttataaaaa tattaagctg atatttatta caatttcact cattatttca
      181 aaggagtttt taatggttaa aaatttaatc atcaaatttg gacgcttgat tcttgatgca
      241 attgcagcga taagttttgt tgtagctttg ctttattctc tttttatgat gtttagcatt
      301 ggatttttag ctggtttatt atcgctgata gtcagtttta ttgctttatt tttaagtttt
      361 tttgtaatct atcttgttat agatatcaga gatgctcttg taaataaagc ttaaattttc
      421 cacctttaag gtgggaaatc aatgttttaa ttgaaatttt aaaatttctc cagccatata
      481 aggcacgact tgattgtatt tatcttcata aacatttggc acttgccatt ctttttcttc
      541 taaagttaaa attttatctt ctttaaattt taaatcataa attttacaag cattatcgct
      601 taaaaatttt tgcaaatttt cttcagaact attttgccta aataattcag ccaacacagg
      661 taaaatcact ggggcgctaa atacacctgc ggcacaacca caacactctt tagtatctct
      721 tgggtgaggc gcactatcac ttccaaacat aactttttca taaccactaa aagcaagttc
      781 gcaaagggct tctttatctt cgtaacgctt ggctataggc ttacaaaaaa gatgaggatt
      841 cattttacct ccgataacat catctaaagt gatgattaaa tgatgtaaag tgattgtcgc
      901 gtataaattt tcataatctt ttaaaagttc acataaagtt ttagtggtaa tatgctccat
      961 aacaatctta agtcgtggaa aatgtttggc taatttttca taaattttag caaaattact
     1021 ttccctgtcc attacaaaat cattggtttc tccatgcact agcaaaggaa tatttaaatc
     1081 actcatagcc tctaaagtag gttttaaata ctctatatca aaacttgaaa ctccgccatt
     1141 tgaatttgtt gtaattcctg ctggataaag cttaatgcca aaaatttcat ctttagcact
     1201 gtaaagaaat ttctcatcat aattttcaaa aaaaagtgtc attaaaggag tgaaattttc
     1261 atctttacaa gccttaatga tacgcatttt ataagctttt agatcttcta aattgcaaag
     1321 tggagggatt aaatttggca taatcacagc tgcacaaaaa tctcttgcac tcaaaggtgc
     1381 aataagttct aacatttgat tatctcttaa atgcaaatgc atatctaaag gatttttaag
     1441 tttcatttta tctcctatat ttttagctga taaaatccat ttttaagacg cttaaaaagc
     1501 tttttttctt ctaaaaattt aaaagtagcg atgatagtgg gcttgctttg gtttaatttt
     1561 tcttcaagct cactgatttt aatcataata aaaccatttt catcggcatt ttcgcataaa
     1621 aattttaaca attcaaaacg cttttttccc aaaatttctt gtattaattt ttcaaatttc
     1681 ataagtaaat gctatataaa ataaaactcc aaacaaaaag agctaaaagc acactaaaaa
     1741 acactgccgt actcgcacaa tctttagcaa tttttgcctt ttcatgccat tcatttgtaa
     1801 tcaaatcaac acaagcttca atagccgaat ttaaagcctc tataattaaa ataagcatta
     1861 aaacacttac caataataaa tgctccaaaa aactaacttt taagaaaaaa ctaaaaacta
     1921 tcgcagggat aataatacaa agttcaattc taaacgccat ttcattttta aataaagcaa
     1981 aaatcccttc taaagcatat cttgcattat ttaaaaaatg atatttaggc ttcatggatt
     2041 tgccttaagt ttaggattta ataaatcata ttctggctca taaacacttg tttttacatc
     2101 aaaatatcct aaaagagtac taaaaagatt atcttgagaa agttttaaac ctttatgctc
     2161 tttagctaaa ttcattaatt tttcatcatt gctccaaaaa atagcaggaa tacgggtttg
     2221 ataacttggc gctatagcat aaggcatacc atgaagataa atatcatttt cacccaaact
     2281 ttcaccatga tctgaaagat aaaacaaaga actttcatag cttttttgct cttttaatag
     2341 ttttataatc tcacttaaaa gataatctgt ataaagtaaa gtattgtcat aagtattgat
     2401 caaagcctcg ctatcacatt ttgaaagctc attagtatca caagttggag tgaatttttt
     2461 aaattcactt ggatagcgtt tataataagt tggcccatga gaaccttgca aatgaagaac
     2521 tattatattt tgatcactta aatgatttaa tttttcttta aaaggagcga gtaaattttc
     2581 atccaaatca ctagaaagct tttgcttata agctaatcta tcacaaaccc ctttacaacc
     2641 accagaatta ttatcaaacc atgcagtatc tacacctgtt ttataaagca catccatcgc
     2701 attttcttga aattctgaac ttgaataatt ttcacgctta gaaatagaaa acatacaagg
     2761 taaacttacc gctgttgctg ttccacatga tgaaaaatta tcaaaaaaca ctacattatc
     2821 ttttttggta taaaaattgg tatcattttt agtatatcca cccaaagagt agtttgccgc
     2881 tctagcggtt tcacccacta ccaaaactaa aagtttttta gtgtgattgt tttctctata
     2941 agcatcatta gctatggttt taaattctgg cttagctttc acaaaacgaa cataatagcg
     3001 atatacggca taaatttgat aaaaaggagt attatacatt cttatttcat tatagtttct
     3061 aaaaaaaggc aagaaagttt tacttaaagg gattaaaact gcacaaacaa caatcaaacc
     3121 tgatattata ttgataattt taatttttat atgggattta aaactaccat aataatcaat
     3181 ttttacttta acaacataaa aaaccaataa taaagccaaa acaataaata agatcaattt
     3241 taaatttaac aaatctttta cttctttaat gtctgtttga acaacatttt gtatcatatc
     3301 agaatctata agtacccc
//
LOCUS       DAPIWU010000128         3313 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.130, whole genome shotgun sequence.
ACCESSION   DAPIWU010000128 DAPIWU010000000
VERSION     DAPIWU010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.130"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            182..1213
                     /gene="pseI"
                     /locus_tag="RJ285_001666"
     CDS             182..1213
                     /gene="pseI"
                     /locus_tag="RJ285_001666"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HDV7384399.1"
                     /translation="MQIGNFNTDEKVFIIAELSANHAGSLEMALKSIKAAKEAGADAI
                     KIQTYTPDSLTLDCDKDDFIIKGGLWDKRKFYELYESAKTPYEWHSQIFEAAQDAGIL
                     CFSSPFAKEDVEFLKRFDPIAYKIASFEANDENFVRMIAKENKPTIVSTGIANEEELF
                     KICEIFKEEKNPNLIFLKCTSAYPAQISDMNLKGIASLKEKFGVEVGLSDHSFGHLAP
                     VMAVALGARVIEKHFMLDKNIKSEDSEFSLDFDEFKAMVEAVREAESALGDGSLALDE
                     KGLKNRVFARSLYASKDIKKDEIFSEENVKSVRPSFGLHPKFYKELIGKTATKDIEFG
                     TALKQGDFQ"
     gene            1210..2178
                     /gene="legB"
                     /locus_tag="RJ285_001667"
     CDS             1210..2178
                     /gene="legB"
                     /locus_tag="RJ285_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038816896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HDV7384400.1"
                     /translation="MKTLVTGADGFIGSHLCESLVQKGYKVRALSQYNSFNFWGHLEK
                     SPYLKDMEVVSGDLRDSFFCEKITQGMDAIFHLGALIAIPYSYEAPQSYVDTNVKGTL
                     NMLEAAKKNEISHFIHTSTSEVYGTARYVPIDEKHPLQPQSPYSASKIAADMMALSYY
                     NAFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGTKELKLGNLSPTRDLNFVLDTC
                     EGFISLLKLNHFGEVYNIGSGTEYSMQEVLDLIQKILNQNVKIIQDEKRLRPKNSEVF
                     RLKCDSSKLQNATHWQSKISLEEGLKLSIEYFKENLASYKSEVYNV"
     gene            2171..3313
                     /locus_tag="RJ285_001668"
     CDS             2171..3313
                     /locus_tag="RJ285_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LegC family aminotransferase"
                     /protein_id="HDV7384401.1"
                     /translation="MFENEIAFIKKLFNKEKIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVARFEEALKQRTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGARAIFLDIDENTLSLGPKALQNFLENHSYQKDGFTYNKITHKRIKACVVMHT
                     FGLSADIEKLCEICKNYNIFLIEDAAEALGSTYKNKALGTFGKCGILSFNGNKIITGG
                     SGGAILCDDENLANLTKHLSTTAKIPHPYEYDHDIIGYNYRLCNINAAILLAGLEKLD
                     FFLENKRELAQIYKEFFTNHKACKFIDERKNSKSNFWLNALCFKDGNLRNTFLQECLE
                     NNIFVRPVWKSLPSLKPFQTWQKDELLNTQKLEKCLVNLPSSVRLN"
BASE COUNT         1214 a          493 c          603 g         1003 t
ORIGIN      
        1 aataaaaatc ttaaaattaa aaatttttca agaaaacttg caggttatca atttgcacaa
       61 aaatttggtt ttggcgttac caaagaaaca atcaaacatg ataaaaaaat ttttatcatg
      121 caattagttt ttttaaaaaa agtcgatata atgcaaaata agaaccataa aaggcaaaat
      181 catgcaaata ggaaatttta ataccgatga aaaagttttt atcatagcag agctgtccgc
      241 aaatcacgca ggaagtcttg aaatggcact taaaagcata aaagcagcta aagaagcagg
      301 agcagatgcg ataaaaattc aaacctacac tccagatagt ctcacgctag attgcgataa
      361 agatgatttt atcatcaaag ggggactttg ggataagcgc aaattttatg agctttatga
      421 aagcgctaaa actccttatg agtggcattc tcaaattttt gaagccgcac aggatgcggg
      481 tatactttgt ttttcaagtc cttttgcgaa agaggatgta gagtttttaa aacgctttga
      541 tcccatcgcc tataaaatcg cctcttttga agcaaatgat gaaaatttcg tgcgtatgat
      601 cgccaaagaa aacaagccta ccatcgtttc aactggtatt gcaaacgaag aagagctttt
      661 taaaatatgt gaaattttca aagaggaaaa aaatcctaat ctgatctttt taaaatgcac
      721 ttcagcttac ccagcacaaa tttctgatat gaatttaaaa ggtattgcaa gtttaaaaga
      781 aaaatttggc gttgaagtag gacttagtga tcatagcttt ggacacttag ctcctgttat
      841 ggctgttgcg cttggggcta gagtgataga aaaacatttt atgcttgata aaaatataaa
      901 aagcgaagat agtgaattta gtcttgattt tgatgaattt aaagccatgg tggaagcagt
      961 aagagaggct gaaagtgctt tgggtgatgg ctccttagcc ttagatgaaa aaggtcttaa
     1021 aaaccgcgtt tttgctagaa gtttatatgc aagcaaagac atcaaaaaag atgaaatttt
     1081 tagcgaagaa aatgtaaaat cagtgcgtcc ttcttttggt cttcatccta aattttacaa
     1141 agaacttata ggaaaaactg ctactaaaga tatagaattt ggcacagctt taaaacaagg
     1201 agattttcaa tgaaaaccct agtaacaggt gcagatggtt ttataggctc tcatctttgt
     1261 gagagtttgg ttcaaaaagg ctataaagta agagctttaa gtcaatataa ttcttttaac
     1321 ttttggggac atttggaaaa aagtccttat ttaaaggata tggaagttgt aagtggggat
     1381 ttaagagata gctttttttg tgaaaaaatc acccaaggaa tggacgctat ttttcatctt
     1441 ggagctttaa ttgccattcc ttattcttac gaggcaccgc aaagttatgt agatactaat
     1501 gtaaaaggta ctttaaatat gctagaagct gcgaagaaaa atgaaatttc tcattttata
     1561 cacacttcta caagcgaagt ttatggcact gcaagatatg tgcctattga tgaaaagcac
     1621 cctttgcaac ctcaaagccc ctattctgct agtaaaatcg cagcggatat gatggcgctt
     1681 agttattata atgcttttaa tttaaatgta aatattgctc gccctttcaa tacctatgga
     1741 ccaagacaaa gcgcaagagc cattataccc actatcataa cacaaatttt aagtgggaca
     1801 aaagaattaa aacttgggaa tttaagtccg acaagggatt taaactttgt ccttgatact
     1861 tgcgaaggct ttatctcgct tttgaaatta aatcattttg gagaagtgta taacataggc
     1921 tctgggactg aatactcgat gcaagaagtg cttgatctta tacaaaaaat tctaaatcaa
     1981 aatgtaaaaa tcatccaaga tgaaaaaaga ttgcgcccaa aaaatagtga ggtttttaga
     2041 ctaaaatgcg attcaagcaa acttcaaaat gcaacccatt ggcaaagcaa aataagtctt
     2101 gaagaaggct tgaaactaag catagaatat tttaaagaaa atttagcaag ttataaaagt
     2161 gaagtttaca atgtttgaaa atgaaattgc ttttattaaa aaacttttca ataaagaaaa
     2221 aatcgccttg cacgaacctt gctttatcgg aaatgaaaaa aaatatctct tagaatgcat
     2281 tgatagcggt tttgtttcaa gcgtaggtga gtttgtagcg cgttttgaag aagctttaaa
     2341 acaaagaaca aaagctcgat ttgttatcgc tacaaataca ggcaccgccg cacttcatat
     2401 cgctttactt gcaaatggta ttgatgaaaa ttgtgaggtg attacccaaa gtattagctt
     2461 tgttgcaacg gcaaatgcta ttgcttacac aggagctagg gctatttttt tagatattga
     2521 tgaaaatact ttaagtttag gccctaaagc tttacaaaat tttttagaaa atcacagcta
     2581 tcaaaaagat ggctttactt acaataaaat cacacataag cgcatcaaag cttgtgttgt
     2641 aatgcacact tttggcctta gtgctgacat agaaaagctt tgcgaaattt gtaaaaatta
     2701 taatattttt ttaatcgaag atgccgccga agctttagga agcacttata aaaacaaagc
     2761 tttaggtact tttggaaaat gtggaatttt aagttttaat ggaaacaaaa tcatcacagg
     2821 tggaagtggc ggagcgattt tatgcgatga tgaaaatttg gcaaatctta caaagcattt
     2881 aagtactact gctaaaatac ctcatcctta tgaatacgat catgatatca taggctataa
     2941 ttatagactg tgcaatataa atgccgcaat tttacttgcg ggacttgaaa agctagattt
     3001 cttcctagaa aacaaaagag aattggcaca aatttataag gaatttttta caaatcataa
     3061 agcttgtaaa tttatagatg aaagaaaaaa ttcaaaaagc aatttttggc tcaacgcttt
     3121 atgttttaaa gatggaaatt taagaaatac atttttacaa gaatgtttag aaaacaatat
     3181 ttttgtgcgt cctgtatgga aaagcttacc tagccttaaa ccttttcaaa cttggcaaaa
     3241 agatgagctt ttaaatactc aaaaattaga aaaatgtttg gtaaatttac ctagcagtgt
     3301 aagattaaac tag
//
LOCUS       DAPIWU010000129         3188 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.131, whole genome shotgun sequence.
ACCESSION   DAPIWU010000129 DAPIWU010000000
VERSION     DAPIWU010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3188
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.131"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(108..1454)
                     /locus_tag="RJ285_001669"
     CDS             complement(108..1454)
                     /locus_tag="RJ285_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HDV7384402.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASGGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            1697..2038
                     /locus_tag="RJ285_001670"
     CDS             1697..2038
                     /locus_tag="RJ285_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HDV7384403.1"
                     /translation="MAYGSSNPEDLAKNFTKDLYSGDTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENTAKAKRMGGVKDIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRKWLVLLK"
     gene            2022..2627
                     /locus_tag="RJ285_001671"
     CDS             2022..2627
                     /locus_tag="RJ285_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384404.1"
                     /translation="MFYLNKILYFFLILFLLIGILGFFINSNPSNQIIKKPYLPFLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTILIHATTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQKIVAKALEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQTFFENNQSVLIYESQNF"
     gene            2691..3038
                     /locus_tag="RJ285_001672"
     CDS             2691..3038
                     /locus_tag="RJ285_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384405.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGTPATPNTQAIPV
                     ARKIEIQCYKKAY"
BASE COUNT         1263 a          532 c          371 g         1022 t
ORIGIN      
        1 aaataaaata atacaaaaaa acgcttatat ttttataaat ttttgactca aaaatatcat
       61 aaaacaatga accaatcatt gaaaaatcaa aagttctttt attttaatta tattatccca
      121 gctacctcag caaaaatcaa gcaaataata cttatacccc atatataaaa aaagcttctt
      181 ttgatatgat ctttaatatt aacctctgct aaaccacaac ctagcaaagt tgcaggcaca
      241 acaggagaaa taaatgtcgc acaatttctt gctatcacca tgataatagc tatagtcaaa
      301 ggttcagcgc caaaagcctt agttacactc aaaactatag gcatcactcc ataaaaataa
      361 gaatctgtac aaaaaataat tgccattgga acagccaata tccctaccat caaaggaata
      421 taagcgccta aataatctgg aacaaaattt aaaatcaaaa cacccatttt ctccataata
      481 ccacttttat caaatacgcc tattaatatc ccagcaccaa ttaaagtaat atacataagc
      541 attgcaccac cacttgcacg atctaaaact tttttagctg tttttaaatt aggataatta
      601 agcggtaaaa ttattgcaag tcctatcata aagcaaatat aactaggaat aataccgcta
      661 attaaaagcc caataactcc aatagctaca agtaaattta accaaaacca tttttcatta
      721 tggtgttcgc ttttttctat atttaaattt attccagaca agttacctgc gcctgcacct
      781 ctttttattt ctatcttagc aatccaaatt gccaaaagaa gggataatac caaacctaca
      841 atctgaatag gtataatatg gtgccaaagc aaatttgcat ccattcctat attagtagcc
      901 gctcttaaag taggaccacc ccaaggaata acattcataa cccccatagc cgaagtaata
      961 atcaataaca ttgaagtctt tcttatacct aaacgctcat aaataggtaa taatgcaggt
     1021 attacaataa gaaaagtaga agcacctgaa ccatctaaat gcacagcagc agcaataaaa
     1081 acagtaagaa tgcaaacttg atatacatta gctttcattt ttgataaaaa tgcatttaaa
     1141 attttagtaa aaaaaccact tgcatttaaa acactaaaaa agagtataga aaaaacaaac
     1201 aaagctgccg tatccgttac gcttttgact ccatctttaa taaaaacaac caatgtttta
     1261 atatcaaaaa cacctccttt aacccctaaa gctacaccca cgccaaaacc aagccgttca
     1321 agaataagta aaatacaagc tacactaata cttacactta taaaagctaa tgctggagta
     1381 gtataatctt ttagcaaaag ccaaactatc aatcctaacg agaaaaaacc caataaagct
     1441 aaaaaaattt ccatatccta tccttttgta tcatttttat tcgataataa aataggatat
     1501 tttaactcca acttatatgt gtttaaattt atagcttttt aaaaaaatat attttctaat
     1561 gtaaccatta taaacaagaa taaaaaaata attttgaatt attttgctat aattatgaat
     1621 attttaattt atactatcaa aagaaaaaaa tgaaattttt taaactttct ttcttggctt
     1681 tagttgcctt tttttagtgg cttacggttc ttcaaatcct gaagatttag ctaaaaattt
     1741 tacaaaagat ctttacagtg gtgatactaa atctgttatg agttacattg atcttagcga
     1801 agctaaaagc gatgaagaaa aaacatttgt tagtgataaa atcactcaag ttgttgctga
     1861 aaatacagcc aaagcaaaaa gaatgggtgg tgttaaagat attcaaattg aagaaaaaac
     1921 aatcaataaa gattctgcta aaatcagagt tttagtgtta tttaacaatg ataataatca
     1981 aagcagcaat gtttttcttg ctaaaaaaga tagaaaatgg cttgttttac ttaaataaaa
     2041 ttttatattt tttcttaatt ttatttttat tgattggaat tttgggtttc tttataaatt
     2101 ccaatccttc aaatcaaatc atcaaaaaac cctatctacc ttttcttgaa ataggtgatc
     2161 ttgtctttcg tgcaggaata ggaagtgaaa gttttttaat agaaaattta agtcaaagcc
     2221 cttattctca tatcgctatg gtagttaaaa cttctccaac tatactcata catgctacaa
     2281 cagatgatga caaaaatgct aaaaaccaag ttatcttaag ctctatggat gattttttaa
     2341 aactgagtca taaaattgct attaaaagat taaaatttga tgaaaaaacc aaacaaaaaa
     2401 tagttgctaa agctttggaa catttaggca gaaaatttat cataagtaca gataaagatg
     2461 ctttttactg cactactttt ttagaacaat ctattaactc cattacccca tttcatcttc
     2521 aatatactct aatcaaagct ccttttaatg aaggtttata tctttttcca caaacttttt
     2581 ttgaaaataa tcaaagcgta ttaatttatg aaagtcaaaa tttttaattt cacattcact
     2641 tcacttaaaa attttataat gtcatcactt tacattaagg agaaataatt atgaaaaaaa
     2701 gtattttatt cgcatcagca cttttagcta gctcaatgct ttttgcagat agtctaaaac
     2761 ttgaaggtac tattgcacaa atttatgata acaacaaaac cttgcttatt gactctattt
     2821 atggcggaca aatggctata aaagttctac caaataccga aatagaaatg gatgattgtg
     2881 gtatttttgg aacagataaa gatggaactt ttaaagattt acaggttgga aattttttag
     2941 aaagtaaaat ttcttatgga acacctgcta caccaaatac tcaggctatt ccagtagcta
     3001 gaaaaattga aattcaatgt tataaaaaag cttattaata taaatccctt aacaagggat
     3061 ttataaaaat cattcttcgg caaactactt cattactctt aaataaaaat ttaaactctt
     3121 ttttaacaag caatttataa aataacactt atattttcat ctaaggcaaa taatgaaaaa
     3181 atggattt
//
LOCUS       DAPIWU010000130         2923 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.132, whole genome shotgun sequence.
ACCESSION   DAPIWU010000130 DAPIWU010000000
VERSION     DAPIWU010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2923)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2923)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2923
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.132"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            19..>2923
                     /locus_tag="RJ285_001673"
     CDS             19..>2923
                     /locus_tag="RJ285_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7384406.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYFRNREYSFSLKFIIITDFYKFYIFKISEFEELFYKN
                     PSFKKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     NLASIYKTFHRDFLLNEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKDISELRKSLRKE
                     DKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILIT
                     GRKGEFIEYKRPTTPKDKAHLIQQELFYTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLSHYPNIKERINKYK
                     RIVKDYKEGFYTDKSRINQEIKNLKISFKNFCFADKFKKEMKGFNDKCEKYSKKYGNF
                     LAVDDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIKEAENKELFTNTKKLRTYQGKMDIWYHFVGRGFDILKN
                     NGYLAFIATNNWVTNSGAKKLRNIVLEESQILSLVDFSSFMVFDSASIQTMIMQFQKI
                     KPPKNYEIHFSKITTQTPIYDDAINLLKNEKTQNNEILKINLTPKKFIDKTLNF"
BASE COUNT         1166 a          435 c          429 g          893 t
ORIGIN      
        1 tttttataaa ggttaaaaat gcatttcact ttgctaaatg aaaaagattt tttcaaccca
       61 tactaccgca aaaagcaaat catgcaaaat gaatttgata tatttaacaa ggctttaatg
      121 caatatctag aaagacttga aagttcgcaa agtgaaaatg aagattatct tgtagctaat
      181 gcacttagtc catttttaac catgttaaat ttcaaaactc acatcaaaac caagcaaaaa
      241 ggcaaaagtg agattgactt atccatctct aaagatgagt ttagtaaaga cttagaagtt
      301 cttattgagg ctaaaaagcc aaattcaaaa gaatttatca ctcatacaaa ggtaaattct
      361 aaagccttac acgagactat tttatattat tttagaaata gagagtatag ttttagctta
      421 aaatttatta tcatcacaga tttttataaa ttttacattt ttaaaattag tgagtttgaa
      481 gagctttttt ataaaaatcc aagttttaaa aaactttttg aagaattttg taatccaaat
      541 tcacttttca aaggtaatac tgaagaattc tataaagaag tagccaaact catagaaaat
      601 tccaaagaaa acttaaaagg ctttttgatt gacttgacat ttttaaaaga caaacaaaaa
      661 tcaaatttta aaaacctagc aagtatttat aaaacttttc atagagactt tttgctaaat
      721 gagtttaacc ccaacgatgc aaattcactc aacaatgctt tttacaaaga gcttttatat
      781 atcttagggc tttgtgagag caaacaaaat tcaaaactca tcatcgcaaa aagtgaagaa
      841 agcaaagaag agcaaggaac tttctacacc gctataaact ctaagctcaa agaagaaaat
      901 tttgaaacca tcttaaaact tttgatctta tggcttaatc gcattttgtt tttaaagctt
      961 atagagtcaa atttggtgcg ttttaatgat gataaaaatt tgaaattttt aaatttcaaa
     1021 aaaatccctg attttgacaa gcttagcgaa cttttctttg aagttttagc caaagaaaaa
     1081 agcacaagaa agaaaagcga atttgcttat ctaccttatc taaattcttc tttgtttgaa
     1141 aaacaaagca tagaaaacac acttgaaatt tcaagcttaa gcaatgactt aaagcttttt
     1201 tactataaaa acaccgtgct aaaagatgat aaatgcaagg ctaaaaaagg acaagtgggg
     1261 cttttagaat acttatttga atttttggat agttttgatt ttggtagcga tgatgagcaa
     1321 agcgaaattt taagccaaaa agaactcata agttcaagtg ttttaggaaa tgtgtttgaa
     1381 aaactcaatg gctacaaaga agggagcttt tacacgccaa gctttatcac ttcttatatg
     1441 tgcaaagaaa gcatcacaaa agttgtactt gataaattca acgctcaatt tgatcttgat
     1501 gctaaagata taagtgaact aagaaagtct ttaagaaaag aagacaaaaa agcacaaaaa
     1561 gagcttttaa actctataaa aatttgcgat cctgcggtgg gaagtgggca ttttttggtt
     1621 tctgctttaa atgttatgct gagtatctat gatgagctaa atctttttga tgaagagttt
     1681 tacctagaag tgcaaaacga tgaaattctc atcacgggta gaaaaggcga gtttatagag
     1741 tataaacgcc caacaacacc taaagataaa gcccatctta tccagcaaga gcttttttac
     1801 actaaaaaag acatcataga aaacaacctt tttggagtcg atattaaccc caactcatgc
     1861 gagatcacca agctaaggct ttggatagag cttttaaaac atagctttta tcaaagcttt
     1921 gatgatgaga attatcacga tcttaaaacc ctgccaaata tcgatataaa cataaaatgc
     1981 ggaaattctt tggtatctta ctttgaaaca ggcaaaagtc taagccacta ccctaacatc
     2041 aaagaacgca ttaacaaata caaacgcata gtaaaagact ataaagaagg cttttacaca
     2101 gataaaagcc gcatcaacca agagataaaa aatctcaaaa tttcttttaa aaatttctgc
     2161 tttgcagata aatttaaaaa agaaatgaaa ggctttaacg ataaatgtga aaaatactct
     2221 aaaaaatacg gaaatttctt agccgtagat gatgaaaatt tgaaattctt tgttagtgcg
     2281 aatttgactc tttttgactt tgatgaaaaa gaagccacaa aagaatttgc aaatcttaaa
     2341 aaagaatacg acaatatctt taacctagaa agcaatcatc cttttgaatg gcgttttgaa
     2401 ttccctgaaa ttttggacga tgatggaaat ttcaaaggct ttgatctcat catcggcaat
     2461 ccaccttata taaaagaagc cgaaaataaa gaacttttta ccaatacaaa aaagttaaga
     2521 acttatcaag gaaaaatgga tatttggtat catttcgtag ggcgtggatt tgatatactt
     2581 aagaataatg gatatttagc atttatcgct acaaataatt gggttacaaa ttcaggagct
     2641 aaaaaactac gcaatatagt tttagaagaa tcccaaattt taagccttgt tgattttagt
     2701 tcttttatgg tgtttgattc tgcaagtata caaacaatga taatgcaatt tcaaaaaata
     2761 aaaccgccta aaaattatga aattcatttt tctaaaatca caacccaaac tccaatttat
     2821 gatgatgcta taaatctctt aaaaaatgaa aaaacccaaa ataatgaaat tctaaagata
     2881 aatttaactc caaaaaaatt catagataaa actttaaatt tca
//
LOCUS       DAPIWU010000131         2916 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.133, whole genome shotgun sequence.
ACCESSION   DAPIWU010000131 DAPIWU010000000
VERSION     DAPIWU010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2916
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.133"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            155..1936
                     /locus_tag="RJ285_001674"
     CDS             155..1936
                     /locus_tag="RJ285_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HDV7384407.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDDNDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSLDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNMDEANRFGWIVEINPFDAQ
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGILYVGQFNGNVGDFKGQGKWIALEYGKNSLNEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYESMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
     gene            complement(1974..2912)
                     /gene="trxB"
                     /locus_tag="RJ285_001675"
     CDS             complement(1974..2912)
                     /gene="trxB"
                     /locus_tag="RJ285_001675"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDV7384408.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
BASE COUNT         1027 a          463 c          496 g          930 t
ORIGIN      
        1 ttaagaagaa gaggttttaa ttagtcattt atacctagtg aaaaactagg tataaatttt
       61 ttcttcaatt taaatttttc atcaaagttt ctaaaaagtt tccaaatatt tttatacttc
      121 cattgtttta aatttcaata tggggtaaaa acaaatggaa agaagattgt ttttaaaagg
      181 ttcagcttta ggttctatgg tggctttttt tgcaagttca aatttaagtg ctgctatgct
      241 taaggataag gatttgctag gttttaaagc tgttagtgca agcacacaag ataaagttat
      301 agtaccacaa ggttatgaag caaaggtttt aatttcttgg ggtgatccac tttttagtaa
      361 agcaaaacct tatgatgaaa ataaaatcat cgacatgaat gcagttaaaa atgctcattt
      421 ggtttttgga gatgacaatg atggtatgag tttttttcca ctttcaaaaa acagaggaat
      481 tttagccgtt aataatgaat atataaatcc tgaaatcatg tttaatcatc atggtaaaaa
      541 tttaagcaaa gaagatattt tatatgagca agccagtgtg ggtgtgagta tcttagaaat
      601 cgaaaaaaaa ggtgatgatt ggactgtggt tttagactct aagtataacc gcagaatcga
      661 tgcaaacact aaaatgcaag taagtggagc agctaaaaaa gaagttttaa aaaatgaaaa
      721 atttgttcat ggaacttttg caaattgtgc aaatggacaa acaccttggg gaacttatat
      781 cacctgtgaa gaaaattttg atgatttttt tggaagttta gatgaaaatc tagaatttaa
      841 tgactctctt aaacgctatg gatttaacaa aactagtctt tatggatggg aaaaatttga
      901 tgaaagattt gatttagcta aaaatatgga tgaagccaat cgttttggtt ggatagtgga
      961 aatcaatcct tttgatgcac aaagcacacc tgttaaaaga acttctttag ggcgttttaa
     1021 acatgaaaat gcagaaatta tcgtagaaaa agatggttct gttatagttt atatgggtga
     1081 tgatgagatg aatgaattta tttataaatt tgttagcaaa cataaataca aaaaaggtgc
     1141 tgatacaagt aaaattttag atgaaggtat tttgtatgta ggacagttta atggcaatgt
     1201 gggagatttt aaaggacagg gaaaatggat agctttagaa tatggcaaaa acagcttaaa
     1261 tgaaaaaaat ggttttaagt ctcaagctca agtactcatc aatacgcgtc ttgctgcaag
     1321 tattgtaggt gcaactccta tggatagatg tgaatggata gcaagccata aacaaagtgg
     1381 ttctaaagaa gtatttgcaa cactaacgaa caacaaaaat cgccaagaac ctaatgcagc
     1441 aaatccaagg actaaaaatg tttatggaca aattttaaaa tggatgccaa aaaattctca
     1501 taaagacgat gattttactt gggaaatttt tgctcttgct ggaaatcctg ataaccaaca
     1561 aggcttatat aaaggctcaa ataatattac aagtgaaaat aaatttaatt ctcctgatgg
     1621 acttaaattt gatagagatg gaagactttg gatacaaaca gatggatctt attctaataa
     1681 agatgaatac gaaagtatgg gaaataactg catgctagca gcaaatccaa aaacagggga
     1741 aattagacgc tttttaacag ggcctattgc ttgtgaatta acagggattg cttttagtga
     1801 ggattatact acaatgtttg taggcataca acatccagga gaaggtttga aaggtagtac
     1861 ttttccttat ggaaaaacac caagatcaag tgtaatgatg ataagaaaac ttgatggtgg
     1921 agtgatagga agctaaataa aaataaagtt gcttttagca actttataaa atcttaatgc
     1981 aagctttcta tataagccat agcacttaat gcagctacag ctccatcacc tgcagcacaa
     2041 ataacttgct taggcgcatc ttttctaagg tcccctgcgg caaaaagtcc agcaacgcta
     2101 gtttgcattt taagatcaac acttacttgc ccaccttctt ccatattgca taaaaactta
     2161 ctatcgtctt gttttaaaat ttcatttctt acgttaagac caacaaaagt aaaaattcct
     2221 ggaacattta aatctctaat actaccatct tttaatttta cttttactcc agcaacaccc
     2281 attttatcgc catatacttc atctacactt gcgctagtaa tgagttctat tttttcgttt
     2341 ttcttaactt tttctactgt agatggagct gctctaaact catctctgcg gtggataaga
     2401 taaatcttag aacaaatatt tgctagatat aaagcttctt ctaaagccgt atctccacca
     2461 cctaaaactg caacttcttt atttttataa aaaaatccat cacaagttgc acaagtgctt
     2521 acaccttttc caaaaaattc atcttcgccc ttaaaacctg ctttttttgg agctgagcct
     2581 gtacaaacta tcacagcttt agcaagttct gttttaccac cttctaattt gatggtaaaa
     2641 cttccatcac tattttttaa aatttgttct actccaacca tttcatgttt taaaccaaaa
     2701 cgcatacatt gttcactcca aggagccata aaagaaattc catccataac ttgggctaca
     2761 cctggataat tttctatctc agaacttgag gtaatttgtc caccaggcat acctttttca
     2821 aacattacta cattcttaag accacctcta gttgcataaa gtccagcact aagtccagca
     2881 ggacctccac ctatgattgc tacatctaac atttat
//
LOCUS       DAPIWU010000132         2817 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.134, whole genome shotgun sequence.
ACCESSION   DAPIWU010000132 DAPIWU010000000
VERSION     DAPIWU010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.134"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..715)
                     /gene="uppP"
                     /locus_tag="RJ285_001676"
     CDS             complement(<1..715)
                     /gene="uppP"
                     /locus_tag="RJ285_001676"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphatase UppP"
                     /protein_id="HDV7384409.1"
                     /translation="MENLYALILGIIEGLTEFLPVSSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVLILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIP"
     gene            complement(790..2787)
                     /locus_tag="RJ285_001677"
     CDS             complement(790..2787)
                     /locus_tag="RJ285_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HDV7384410.1"
                     /translation="MMYKKQNLPELTLRGLVLGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILRRTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
BASE COUNT         1098 a          556 c          362 g          801 t
ORIGIN      
        1 aagggataaa gtcgaattta gaaataaatt ttaagaaaaa ttttataact aaaactgcaa
       61 caataaaagc agtgataaaa cctatgccta aaggaattaa agaatttgca ttgccaagaa
      121 gctcaggctc tttataaatg ctataagctg tagcgataat catcgttgga atggcaagca
      181 aaaaactaaa ctcagcagcc acttttctat taaatcctaa caaaagccca ccaataatac
      241 ttgctccact ccttgaagtg ccaggaatca tggctaaaga ttgaaaaata cctatacaaa
      301 aagcttgttt aaagcttatt tcttctaaag aattgatacg atattgttta tttttgtgcg
      361 caagttctat aagaataagc acaacaccac caaaaatgag cattccaacc acaacccaac
      421 cattaaataa agcatttaag tattttgcca caaaaagccc tataactccg gtaggaaaaa
      481 atcccactgc aagttttaac caaatatcaa gcccttgaaa caatttacgc caaaatacaa
      541 aaattaccgc caaaatagaa ccaagctgga tgataatcaa aaagcttttc caaaactcat
      601 ctatatcgat acctaaaata gtcgtaccta aaatcatatg tcctgttgaa gaaacaggta
      661 aaaactcagt cagaccttct ataattccaa gtattaaagc atataaattt tccatattta
      721 atccttgaat gataattgca aaagaaaaat tatatcagaa tggattaaat agggttttaa
      781 ccccaaaaat taagcatctt ttttaacaat acgcttaatg aaatataata caactcccac
      841 aaaaaagata agtgcgaaaa gctcactatc atgaaaattt gctaaattta aagctaaagg
      901 attttcacta ccacccatac ttactgaaaa tacagtaatt cctgcgataa ttaccccaaa
      961 aatactttca cccactataa gccctgaagc aaaaagcgtg cctctttgct cacaacttgc
     1021 aagtttttct tctttatgag aattttttgc atatttttta gtcaagtgtt gcattacaat
     1081 atattttaaa attccgccta taactaaagg tatatttaca gcagggggaa ggtaaatacc
     1141 tattccaacg gctaaaggcg gcaaagacat tttctgtgtt cttcttaaaa ttttatctat
     1201 aataatcatt aaaattccta caaatacacc aaaagccata taaccccact ctatattgtg
     1261 atgaaaaatt ccttgggcga tagtactcat taaatttgct tgcggtgctg ctaaagctga
     1321 tgaagcatcc ataccttctc ttggcattgc tccgacaaaa ccataggctt gataaagcaa
     1381 atttaaaaca ggaactatag ccaaagcacc aaaaacacag cctacaagta aagcaacttg
     1441 ttgtttccaa ggagtagctc cgactaaatg tcctgtcttt aaatcttgta aattatcatt
     1501 cgaaatagca gctgtagcta aaataacact agtagtaaaa atagctaatg ctactgcaaa
     1561 tttagaaagc ataggatctt gaaaaagttc cacacctaaa accaaaaaaa caatagaaga
     1621 aataataaca ccaataagtc cgattccaga aataggacta gaagaagatc ctacaagtcc
     1681 tgccatatat ccgcaagctg ctgcaacaaa aaaacctatt aaaacagaaa ctaaagttcc
     1741 aacaaatgaa aatagcattt gataataaat acttaagtta gcatcttcaa caaaactata
     1801 aaaagtaata aataaaccca caaccattaa aacaaaaagt ataaaaatac tttttaaaga
     1861 aaggtctata tttgttcttt catttttttc ttgattagta attttaacat ttttaacaat
     1921 ttctttaata ccttcaataa cgggttttaa aagttctatt aaagtccaaa gcgctgctat
     1981 agcaatagct cctgttccta taagccttac cttagaactc catacactag aagctaaatc
     2041 tacggcattt tttgcactat cgaattcaaa atttgaaaga tagggagtaa aaatacccca
     2101 agctaaaaac atacctacaa aaagagctat agcacctgct aaaccaacta aataacctgc
     2161 ccctaaaagt gccaaagaat atcccataga aaaaccaaaa gccattttat tccaaataaa
     2221 agcaaaatta ctctcacttg cagcgagttt aaaaccattg cttaacaaac taaaaatagc
     2281 agctataaaa gagcctaatg ctatttcttt aatgccttgt tttccttttt tactactctg
     2341 atctttattg gctactttta aaatttcagc tgcagctcta ccttcaggat aagcaagctt
     2401 gctttcaacc accatagtcc ttcttaatgg tatagtaaaa agcactccaa gtccgccacc
     2461 acaaagacat atcataaaag tttgccaaag tggaaattca ctccaatacc cacacataaa
     2521 aagccctggg ataacaaaaa taactgatga taaagttcct gctgctgaag cttgagtttg
     2581 aaccatatta ttttctaaaa tatttgaagt cttaaaaaga ctcaaaaccg ccatggagat
     2641 gaccacagct ggaattgatg atgaaaaagt aagtcccact tttaacccta aatatacatt
     2701 tgaagctgta aaaataatag ttaaaatact tcccaaaacc aaacccctta aggtaagttc
     2761 tggtaaattt tgttttttgt acatcatttc tccgttttaa aattttactt tcaactt
//
LOCUS       DAPIWU010000133         2731 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.135, whole genome shotgun sequence.
ACCESSION   DAPIWU010000133 DAPIWU010000000
VERSION     DAPIWU010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2731
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.135"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            71..2056
                     /locus_tag="RJ285_001678"
     CDS             71..2056
                     /locus_tag="RJ285_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HDV7384411.1"
                     /translation="MLKQSIETYKKGDNLGAKKLSEDAYFQHFENMEGPIGRNIGRKA
                     ITMERKFVNLRRMYKDEAPLTQINALIDSLYYDLDEVAPILQNGYRLKAEASDINYDK
                     AKAEKSSLEANAKREADAEALIAQMMGVDKKDLAQSSLTTQAPIPVNNDTSKLIDDNA
                     STDLQAAAAMDVRLQFILDNISTKFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVE
                     ILVNKFTKAGNDQKIQQAIRTLIRQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSE
                     LSSLQISGFNDETKGKDYAKVSNDIKLALDEILKNYDGFSTSMVDDLQGIYLDIFEAS
                     GMENKIGAVDSGLKLKIESLFSKGMALIKASADKKELEATFNDLEQLIASSVDKIQDS
                     TPYSLFIWALGIILREGLEALIIIVAIVSYLVQSGNKNRLNIAYSALFTGVILSFITA
                     FGVSWLFKENAGQSRELIEGITMLIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAI
                     SNNSAKTLWITVFLAVYREGAETVLFYQALLFDAKTSTDFGAVFGGLGLGILILIVLY
                     FLLKAGAIRIPVKQFFYITSYIIFYMVFVFTGKGIAELIEGKVIIPGLIPMNFEPILW
                     LGIYPYYETLIPQFIVLIMLIIGILITKQISKKGVKS"
     gene            2053..2592
                     /locus_tag="RJ285_001679"
     CDS             2053..2592
                     /locus_tag="RJ285_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HDV7384412.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
BASE COUNT          957 a          410 c          488 g          876 t
ORIGIN      
        1 tattttttta tcaagctcag cttttgctag ggtagatgat tatattaatg aagcaaatct
       61 tatcaaagat atgctaaaac aaagcataga aacttataaa aagggcgata atctaggcgc
      121 caaaaagctt agcgaagatg cgtattttca acattttgaa aatatggaag gcccaatagg
      181 aagaaacata ggaagaaaag ctatcactat ggaacgtaaa tttgtaaatt tgcgtcgcat
      241 gtataaagat gaagctcctt taacacaaat taatgcttta attgatagtc tttattatga
      301 tcttgatgaa gtagctccga ttttacaaaa tggatatcgt ttaaaagcag aagcaagcga
      361 tataaactat gataaggcta aagctgaaaa atcaagccta gaagccaatg ccaaacgcga
      421 agctgatgca gaagctttaa tcgcacaaat gatgggtgta gataaaaaag atttagcaca
      481 aagctcttta accacccaag ctcctatacc tgtaaataat gatacaagca aacttataga
      541 tgataatgca agcactgatt tacaagctgc cgctgcaatg gacgtaagat tgcaatttat
      601 actagataat atctctacca aattttcaca ggcagctaat gcttttaaag aaaaaaacta
      661 ccaaactagt aaagattttt taaatgatgc cttatttagt gattatcgca ataccaaagt
      721 agaaatttta gtaaataaat ttaccaaagc aggaaacgat caaaaaattc aacaagccat
      781 acgcaccctt atacgccaaa tcaacgatgc aaaaatagat gaaaaaggct taagagatgg
      841 cttagataac atagaagaac aaatttttga tgttttctta caaattccaa attcagaact
      901 ttcaagtttg caaatttcag gctttaatga tgaaacaaaa ggcaaagatt atgccaaagt
      961 ttctaatgat atcaaacttg ctttagatga aattttaaaa aattatgatg gctttagcac
     1021 ttctatggta gatgatttac aaggaattta tctagatatt tttgaagcaa gcggtatgga
     1081 aaataaaatc ggtgctgtag atagtggctt aaaacttaaa atagaaagtt tattttccaa
     1141 aggcatggca ctgattaaag caagtgcaga taaaaaagag cttgaagcta cttttaatga
     1201 cttagaacaa ctcatagcca gcagcgtgga taaaattcaa gattctactc cttattcgct
     1261 gtttatatgg gctttaggta ttattttgcg tgaaggcttg gaagctttga ttatcattgt
     1321 agccattgtt tcttatcttg tgcaaagtgg caacaaaaat cgtctaaata tcgcctatag
     1381 tgctcttttt acaggagtga ttttaagttt tattaccgct tttggagttt cttggctatt
     1441 taaagaaaat gcaggtcaaa gtagagagct tatagaaggt attaccatgc ttatagccgt
     1501 attactactc ttttatgtgg gcttttggct actttcaaac gcacaaaata aaaaatggac
     1561 aagctttatc aaacaaggtg ctatagatgc tatatcaaat aatagcgcaa aaaccctttg
     1621 gattaccgta tttttagctg tttatagaga aggtgcagaa actgtgcttt tttatcaagc
     1681 cttgcttttt gatgctaaaa caagcactga ttttggtgct gtttttggcg gacttggact
     1741 tggaatttta atacttattg ttttatattt tcttttaaaa gcaggagcca ttcgcatacc
     1801 tgtaaaacaa tttttctata tcacttctta cattattttt tacatggttt ttgtttttac
     1861 aggcaaaggc atagccgaac tcatagaagg aaaagtcatc attcctggtc ttatacctat
     1921 gaattttgaa ccgattttat ggcttggaat ttatccttac tatgaaactt taatccctca
     1981 atttatagtt ttaattatgc taattattgg cattttaata acaaaacaaa tttcaaaaaa
     2041 aggagtaaaa tcatgataaa aaaagtttta tcagtagttg ctgcagctgc ggttattagt
     2101 acaaatttat ttgcgggcga agtgccgatc ggcgatccaa aagaacttaa tggcatggaa
     2161 atagccgctg tttatttaca acctattgaa atggagccaa gaggtattga tttagctgca
     2221 tctttagcag atattcacct agaagctgac attcacgcac ttaaaaacaa tccaaatggt
     2281 tttccagaag gtttttggat gccttattta actatagctt atgaacttaa aaataccgac
     2341 acaggtgcaa ttaaacgtgg aactttgatg cctatggtgg ctgatgatgg tcctcactat
     2401 ggtgcaaata ttgctatgga aaaagataaa aaaggtggct ttggcgtagg aaattatgaa
     2461 cttacttttt atatctcaaa tccagaaaaa caaggttttg gacgccatgt tgatgaagaa
     2521 acaggtgtgg gtaagtggtt tgaacctttt aaagtagatt ataaattcaa atacacaggc
     2581 acgccaaaat aattttacgc tcggattttc cgagtgtttg aatattttta tttttatttg
     2641 aaaaattaaa ataaaaatgt ttaaagagta aattatgagt atatattttg tgcattttct
     2701 tatcagtgtt ttaccgctaa gtattttaat g
//
LOCUS       DAPIWU010000134         2624 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.136, whole genome shotgun sequence.
ACCESSION   DAPIWU010000134 DAPIWU010000000
VERSION     DAPIWU010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.136"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            21..1415
                     /locus_tag="RJ285_001680"
     CDS             21..1415
                     /locus_tag="RJ285_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003103909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDV7384413.1"
                     /translation="MIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRERIPERTVHAK
                     GSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAERDVRGFAIKF
                     YTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWDFWSLCPESLH
                     QVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGIKNLTNQEAAE
                     LIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLTKIWPHSLVPL
                     MDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSYPDAQRYRIGT
                     NYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDKSYLEPDLVLE
                     GVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKIITRALEHFEKI
                     SPDYAKGIKKALEK"
     gene            1472..1942
                     /locus_tag="RJ285_001681"
     CDS             1472..1942
                     /locus_tag="RJ285_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HDV7384414.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(1943..2599)
                     /locus_tag="RJ285_001682"
     CDS             complement(1943..2599)
                     /locus_tag="RJ285_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7384415.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANN
                     HISGRSLDSPLTVFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
BASE COUNT          972 a          406 c          401 g          845 t
ORIGIN      
        1 tgactaacga ttttggaaac attatagccg ataaccaaaa ttcattaagt gcaggcgcaa
       61 aaggaccttt gcttatgcaa gattatcttt tgcttgaaaa acttgctcat caaaatagag
      121 aaagaattcc agaaagaacc gttcatgcca agggaagtgg ggcttatgga gaaataaaaa
      181 tcaccgctga tttatctgct tatactaagg caaaaatatt tcaaaaagga gaaataactc
      241 ctcttttcct acgcttttct actgttgcag gtgaagcagg tgcagcagat gctgagcgtg
      301 atgtacgtgg atttgccatt aaattttaca ccaaagaagg aaactgggat ttagtaggaa
      361 ataatactcc aacttttttt atccgtgatg cgtataaatt tcctgatttc attcatactc
      421 aaaaaagaga tccaagaact catctaagaa gtaataatgc tgcttgggat ttttggagtt
      481 tatgtcctga aagtttacat caagtaacca ttcttatgag cgatagagga attcctgcaa
      541 gttatcgtca tatgcatgga tttggaagcc atacttatag ttttattaat gataaaaatg
      601 aaagattttg ggtgaaattc cattttaaaa cccaacaagg gattaaaaat cttaccaacc
      661 aagaagctgc cgagcttata gcaaaagata gagaaagtca tcaaagagat ctctataatg
      721 ctatagaaaa taaagatttt ccaaaatgga aagttcaagt tcaaattctt gctgaaaaag
      781 atatagaaaa acttggattt aatccttttg atttaacaaa aatttggcct catagtcttg
      841 tgcctttgat ggatataggc gaaatgattc taaacaaaaa tcctcaaaat tattttaatg
      901 aagttgaaca agctgccttt agtccaagca atatcgttcc tggaattggc tttagccctg
      961 ataaaatgtt gcaagctaga attttttcat atcctgatgc acaaagatat agaataggaa
     1021 ctaattatca tcttttgccc gtaaatcgtg caaaaagcga agtgaatact tacaatgtcg
     1081 ctggtgctat gaattttgat agttataaaa atgatgcagc ttattatgaa ccaaacagct
     1141 atgataatag cccaaaagaa gacaaaagct atcttgaacc tgatttagtc ttagaaggcg
     1201 tagcacaaag atatgctcca ctagataatg acttttatac tcaaccaaga gctttattta
     1261 atcttatgaa tgatgatcaa aaaactcaac tttttcataa tatcgccgct tctatggagg
     1321 gagttgatga aaaaattatc actagagctt tagaacattt tgaaaaaatt tcacctgatt
     1381 atgcaaaagg aattaaaaaa gctttagaaa aataattttt acttgccact tttggtggca
     1441 aactaaagat tataataatt aaggaaaaac aatgacaact cttagtttag aagaagaaaa
     1501 aagatttgaa gagctttgca aaatggcttt taattttgca agaaataatg aatgtgaaaa
     1561 tcttaaaatc atgatagaag caggtttaaa tgtaaattta aaaactcata aaggcgatag
     1621 cttgcttatg cttgcagctt ataataattc ttatgaaagc gctaaaatgc ttttagaaaa
     1681 aggtgcaaaa gtagatgaaa aaaacgatcg tggacaaacc ccattagcgg gagtttgttt
     1741 taaaggatac ttacctatgt gtgaactttt agttaaatat ggagcaaata ttgatgaaaa
     1801 caatggttta ggaatgacac cttatacttt tgctattatg tttggacgca aagatgtggc
     1861 agaattttta ctcaaaaaat ctaaaaataa ttttttaaag aaaataagcc taaaaatact
     1921 aaaatttatc aaaaaatttt agttattttt taaatttctt cagataccta tagacactag
     1981 gttctgaaat ttttaaaaat tttgctacga taggaaccgc cccttttata ttaaaaatac
     2041 ctttttcata tagcttttca gcaatttctt ctttttgagt aatacttaat tgataatcag
     2101 aatttaaata actagaatct acgctttgaa ctaaaatatc ctctatcgag tgacttaatg
     2161 tttctatact tgaatcattt tgagaaaaac taatatttcc taaaatatca cccatatctc
     2221 caattttttc taaatcaatc atcttgcata ttaaatctct cataatgcta gtatcatgat
     2281 tgatacacaa aatacctact aatttgtcat gatttttaat aaaaaaagta gatcctctaa
     2341 ttaattttga ttttccaaca agagccttat aatcacataa aaaatctttt tctaaatatt
     2401 ttttattttg cataagctca cttgcaaaaa cagtcaaggg agaatctaaa cttctcccac
     2461 taatgtgatt gttagcaatt gctgcaatat aggccccatc ttcagtaatt acatggaaaa
     2521 ctatctcata ttgctcacct aaaacttctc ctaaaaaata tgtcaacttt ataaattgtt
     2581 gtttttgtcc ctcatccata aaactgcctt caataaaaaa ttaa
//
LOCUS       DAPIWU010000135         2573 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.137, whole genome shotgun sequence.
ACCESSION   DAPIWU010000135 DAPIWU010000000
VERSION     DAPIWU010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.137"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..555
                     /locus_tag="RJ285_001683"
     CDS             <1..555
                     /locus_tag="RJ285_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTPase"
                     /protein_id="HDV7384416.1"
                     /translation="KEAIQEGTYEGEDVNKFFNTIKTFDVAESLLKKDFSNQYIKFDI
                     ITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENINPEIKKDLNNRLGIYKPKIY
                     DEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREKFEKKQINKSSFFKEKMNEF
                     FKKKLNKILPDREISNEKTYSRSR"
     gene            559..1212
                     /locus_tag="RJ285_001684"
     CDS             559..1212
                     /locus_tag="RJ285_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384417.1"
                     /translation="MNNTINFNELFSQIRLSSYNNDIVKHYDNLKCVGKITPKLATLE
                     IILRNKLDNKLSEKDNDWIKNSNDEKIKKSKEEIEHREKNRILSHHQYLSRISLGTII
                     HLIKENKLQNSIMDLKNINFRNYNQYNRNFFFENGIKLRFRNTHKVDIVLSLLQNLRN
                     RSYHWENILKTTEKNGKHYPRLTTKIKNTHIGVDPQKIDFFLSDLIKTFNEKILEYC"
     gene            1331..2557
                     /locus_tag="RJ285_001685"
     CDS             1331..2557
                     /locus_tag="RJ285_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HDV7384418.1"
                     /translation="MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFS
                     QWLYPHQNKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSG
                     AYNGFLDDYPAGFMQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEI
                     LTLQEKTALKLENEYNNARWANSNHAYLKKKGFDENFYLKQDNKGSLLIPLKDENGKL
                     WSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKSLEHCKEFIITEGFA
                     TAATIYKALNKPVIMGVDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGV
                     ETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLK
                     SFKSMEKTQPEKEITR"
BASE COUNT         1158 a          297 c          365 g          753 t
ORIGIN      
        1 aaagaagcta tacaagaagg aacttatgaa ggtgaagatg taaataaatt ttttaataca
       61 ataaaaactt ttgatgttgc agaaagctta ctaaaaaaag atttttcaaa tcaatatatt
      121 aaatttgata tcattactga taaagaaaaa ataccattaa atataagact tggagataaa
      181 aattttcaaa aaggtattga acatttaatt aatattggta gttccaaatt aattaaagaa
      241 aatataaacc ctgaaataaa aaaagatctt aataatcgac ttggaattta taaaccaaaa
      301 atatatgatg aaatgttaga tggaactttt aaagcaataa aaaatttatc agaagtagcc
      361 aataaagatg ttggtgtaat gatattagaa tttgcaaatt cttattctga aactagagaa
      421 aaatttgaaa aaaagcaaat taataaaagt tcatttttta aagaaaaaat gaatgaattt
      481 ttcaaaaaaa aactaaataa aattttacca gatagagaaa ttagcaacga aaaaacatat
      541 tctcgatcaa ggtaaaaaat gaataataca ataaatttta atgaactatt ttctcaaata
      601 agattatctt cttataataa tgatattgtc aagcactatg ataatcttaa gtgtgttgga
      661 aaaattactc caaaacttgc tacattagaa attattctta gaaataaatt agataataaa
      721 ttatcagaga aagataatga ttggataaaa aactctaatg atgaaaagat taaaaaatcc
      781 aaagaagaaa ttgagcatag ggaaaaaaat agaattttat ctcatcatca atatctttct
      841 cgtataagtt taggaactat cattcatctc atcaaagaaa ataaattaca aaactctata
      901 atggatttaa aaaatatcaa ttttagaaac tacaatcaat acaatagaaa tttctttttt
      961 gaaaatggca taaaattacg ctttagaaat acgcataaag ttgatattgt tcttagctta
     1021 ttacaaaatc taagaaatag aagttatcat tgggaaaata ttttaaaaac aacagaaaaa
     1081 aatggcaaac attacccaag attaacaaca aagattaaaa acacacatat aggagtagat
     1141 ccgcaaaaaa tagatttttt cttaagtgat ttaattaaaa cttttaacga aaaaattttg
     1201 gaatattgtt aagattaaaa aatgggacac aaggagtccc tcgaatttaa aaggtgggct
     1261 actaggaagc cctttgaatt tcattgtaat tatactgaca aaacattaaa caaagttaaa
     1321 aggatataca atgcctcaaa aaagaattta tctttatgtt ccatttaaag acaaagaaaa
     1381 agcaaaatca ttaggggcaa tgtgggatga taaagaaaaa aaatggtttg ctccaaaaac
     1441 cttagataaa aatattttct cacaatggct ttatccacac caaaataaag aattttcatt
     1501 tgatgaaaat gaagtcttaa cagcttttaa atctgcttta gaaaatcaag gtttaattat
     1561 tgaaggctta cctatcatgg atggtaaaat tcatagagta aaaactacta atgataaagg
     1621 tagagaatta agcggtgcct ataacggttt tttagacgat tatcctgcag ggtttatgca
     1681 aaattttaaa acaggcatta aagaaaattg gaaaatgccc atagaaaaaa atcaaagcaa
     1741 taatataaaa aattctcaaa aattacatga gcaaataaaa aaagatcaag agcttagaga
     1801 aaaagagatt ttaactttgc aagaaaaaac cgctttaaaa cttgaaaatg agtataataa
     1861 tgcaagatgg gctaattcca atcacgctta tttaaagaaa aaaggctttg atgaaaactt
     1921 ttatcttaaa caagacaaca aaggttcttt acttattcct ttaaaagatg agaatggaaa
     1981 attatggtct gtgcaaagaa tatttccaaa tggagataag atcataggag tcattaaaac
     2041 tcaagaagaa aaagatcaag gcgtagaata tcttgcaaaa aaacaaggtt gctttcatat
     2101 aataggtgca aaaagcttgg aacattgcaa agaatttatt ataacagaag gctttgctac
     2161 tgctgcaact atatacaagg cacttaataa gcctgtgata atgggtgttg atgctggaaa
     2221 tttatcgaaa attgttgaaa ccctaaaaaa caaatttcaa aacactccta ttaccttaat
     2281 agccgataat gataaaaaaa gagaattgaa aggtctttct aatgtcggag tggaaactgc
     2341 aaaagaaatt caacaaaaat tttcagatat taaagttatt attccaaaaa tcagcaatca
     2401 agaagcagaa caaggaataa gtgatttcaa tgatattttt ttaaataaag ggattgatga
     2461 agtcaaaaaa caattaaatt tcattgattt tcataataag cttaaatctt ttaaatctat
     2521 ggaaaaaaca caacctgaaa aagagataac tagataataa tagttactct ttg
//
LOCUS       DAPIWU010000136         2495 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.138, whole genome shotgun sequence.
ACCESSION   DAPIWU010000136 DAPIWU010000000
VERSION     DAPIWU010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.138"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..626
                     /locus_tag="RJ285_001686"
     CDS             <1..626
                     /locus_tag="RJ285_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384419.1"
                     /translation="KSVSDGDKYLKEREKFVKKFIDVYSDEKFFIIPSYKAKFSEFSN
                     KSDEEKIMFFQEFLEDLVKAFDIEPPIPTIYKEFKQYNNGSYNSVGKKALYLNLKNKK
                     EQILSTFFHEFRHFYIDKNNSKEIKNQHTESIFKLIYSNGYFKFENVVMFWAYDKKCI
                     ISNNYTDCVGVKPYKYSIFSDKPAIYWFSPSERDARISTFYFEKYRG"
     gene            607..1890
                     /locus_tag="RJ285_001687"
     CDS             607..1890
                     /locus_tag="RJ285_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384420.1"
                     /translation="MKNIEVDMLEVAIKNIFKHKDFLQTRKEPYAIYLAINTNIKSYN
                     NICPSEKYFWKFNDMNELECYNPKFGIYLGKIVFDKKGNKLIPKYIPAKFENLEEEVK
                     KIKNPLWLANKNPNYIKPKFYDGMGGGYYFESPNNLEYQCKIEKDTQILSQEQIISYV
                     KELYSKNTMIIKNYIDAINKNHGIKPFVFSDEIYDQLGEVGILTKEQANNFKDKSYIK
                     KNPILLAMLDYLAKQNKKDEDYLITFDDEYFYAYLVWSLKDFLLELSYGLFQDETKLL
                     FNPAAYMDDTKIYYKNLNEEINKRYEKILLDMGFEGENGYFNDYYDYSFGNNGIFKFN
                     IYDYFAYDEIGVQPIQQSPYVSPRSPFDSPNFVYSDGNYHGDAKLIPSALGKYYFELS
                     YQKGVYIELLRPYYPSIKDLPEGWDNKMLEKANLK"
BASE COUNT          972 a          305 c          372 g          846 t
ORIGIN      
        1 ttaaaagtgt aagtgatgga gataagtatt taaaagaaag agagaaattt gttaaaaaat
       61 ttatagatgt ttattctgat gagaaatttt ttatcatacc aagctataaa gcaaaattta
      121 gtgaattttc aaacaaaagt gatgaggaaa aaattatgtt ttttcaagaa tttcttgaag
      181 atttggtaaa agcttttgac atagaaccac caattccaac tatttataaa gagtttaaac
      241 aatacaataa cggatcttat aatagtgtag gaaaaaaagc attatatttg aatttaaaaa
      301 acaaaaaaga acagatatta tcaacttttt ttcacgaatt tagacatttt tatattgata
      361 aaaataattc taaagaaata aaaaatcaac atacagaaag catttttaaa ctcatatatt
      421 ctaatggata ttttaaattt gaaaatgttg ttatgttttg ggcgtatgat aaaaaatgca
      481 taattagtaa taattataca gattgtgtcg gagttaaacc ttataaatac agtatatttt
      541 cagataagcc tgcaatttat tggttttctc caagtgaaag agatgcgaga ataagcacat
      601 tttattttga aaaatataga ggttgatatg ttagaagtag ccataaagaa tatatttaaa
      661 cataaagatt tcttacaaac cagaaaagaa ccttatgcta tttatttagc cataaataca
      721 aacataaaaa gttataataa tatttgtcct agcgagaaat atttttggaa atttaatgat
      781 atgaatgagc ttgaatgcta taatccaaaa tttggcatat atcttggtaa aattgttttt
      841 gataaaaaag gcaacaaact catcccaaaa tacatacccg ctaaatttga aaatttagaa
      901 gaagaagtta aaaagataaa aaatccttta tggcttgcta ataaaaatcc taattatatt
      961 aaacctaaat tttatgatgg tatgggtggg ggttattatt ttgaaagtcc aaataattta
     1021 gagtatcaat gtaaaataga aaaagacact caaattttaa gccaagaaca aatcatttcc
     1081 tatgtgaaag aactttatag taaaaacaca atgataataa aaaattatat tgatgcaatc
     1141 aataaaaacc atggcataaa acctttcgta tttagtgatg aaatttatga tcaattagga
     1201 gaagttggca ttcttacaaa agaacaagct aataatttta aagataaaag ttatattaaa
     1261 aaaaatccaa tattgcttgc tatgcttgat tatttagcaa aacaaaataa aaaagatgaa
     1321 gattatttaa tcacttttga tgatgagtat ttttatgctt atttggtttg gagtttaaaa
     1381 gatttcttat tagagctttc ttatggtttg tttcaagatg aaaccaagct tctttttaat
     1441 cctgcagctt atatggatga cacaaaaata tattataaaa atttaaacga agaaataaat
     1501 aagcgttatg aaaaaatatt gcttgatatg ggatttgaag gagaaaatgg ttattttaat
     1561 gattattatg attatagctt tggcaataat ggtattttta aatttaacat atatgattat
     1621 tttgcttatg atgaaatagg agtgcaacca attcaacaaa gcccatatgt ttctcctaga
     1681 agcccttttg atagccctaa ttttgtctat tctgatggaa attatcacgg agatgcaaag
     1741 cttatccctt ctgctttagg aaagtattat tttgagcttt cctatcagaa aggagtttat
     1801 atagaacttt tacgccctta ttatccaagt ataaaagatt taccagaagg ttgggacaat
     1861 aaaatgctag aaaaagctaa tttaaaataa atatgagcat ccgtgaataa acccttctac
     1921 aaacttaaaa gattttatat accttgtggt atgcttatag ctttgattat tttataagct
     1981 taacttatca ttttttacaa cgacctttag agcttatctt ttgggataga tatgatatat
     2041 cgaaattatc tattaataac gaagagaaaa attttaaaac aatgaaaact gtgaattact
     2101 cctactttcg ctaacgctta gaagtaggag cttcctaact aaagccaagt attcttagct
     2161 agctcgaaag gcttcttgtt tatagcttac acctaaattt tcatataaaa tattaaaact
     2221 tatacaaaaa tctttcataa attgtttcag aagttaaaga gtttgtttgg taaattacat
     2281 taagggttta agccgcaggc tgacccccta cggctaaatt gtgaaacccc tgaaaggagg
     2341 taaactcaat gaggctcata aaactcattc tagtggttat tatactgctt tgtttattta
     2401 tagtcaaggc atattaacca agcgccattt tggggaaact agagtgggtt acctgcggta
     2461 tcaaacaaac ttttaaccaa gcttatctcc tttat
//
LOCUS       DAPIWU010000137         2386 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.139, whole genome shotgun sequence.
ACCESSION   DAPIWU010000137 DAPIWU010000000
VERSION     DAPIWU010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.139"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            1..927
                     /gene="rsmH"
                     /locus_tag="RJ285_001688"
     CDS             1..927
                     /gene="rsmH"
                     /locus_tag="RJ285_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDV7384421.1"
                     /translation="MPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDL
                     KFIACDQDQQALEFSKKRLKDFRNRITFMQSNFSEVLEKISLKEELRGILADIGVSSF
                     QLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAE
                     KICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGH
                     LENLKPKNCILAIISFHSLEDRIVKKFFKKWSKNCICDEKIMRCECGNNHSLGQIITK
                     KAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            927..1865
                     /locus_tag="RJ285_001689"
     CDS             927..1865
                     /locus_tag="RJ285_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384422.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHAKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKEENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKELTNSIEKIQK
                     TETKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQKKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(1853..2344)
                     /locus_tag="RJ285_001690"
     CDS             complement(1853..2344)
                     /locus_tag="RJ285_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384423.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYIRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKII
                     HSK"
BASE COUNT         1033 a          328 c          316 g          709 t
ORIGIN      
        1 attcctcata tcccagtttt gcttaatgaa gttcaagaga tttttaaaaa tcttaaaaca
       61 ggttattttt tagactgcac tttaggattt ggcggacata gtgaagcttt gcttaaaaat
      121 catcctgatc ttaaattcat tgcttgtgat caagatcaac aagctttaga attttctaaa
      181 aaacgtctta aagattttcg caataggata acttttatgc aaagtaattt tagtgaagtt
      241 ttagaaaaaa tttcactaaa agaagaatta agaggtattt tagcagacat tggagtttct
      301 tcatttcagc ttgataataa cgaaagaggt tttagtgtaa attctgactt tttggatatg
      361 agaatgaatc aaaactccaa aatatcggct tatgagatta ttaatactta tacaaaagag
      421 caattaactt ccatttttaa agattatgga gaattacatg atgcacattt tattgctgaa
      481 aaaatttgcc tagaaagaag taaaaatcca atcaaaagtg ccaaagagct ttatcaaatc
      541 ataggaaaag gtaaacaaaa tcatagaaaa atttccaaag ctactttagc atttcaagcc
      601 attagaatag aagtaaatca agaacttaaa gtgcttaaag attttcttgg gcatttagaa
      661 aatttaaaac caaaaaattg cattttagca atcattagtt ttcattcttt agaagataga
      721 atagtaaaaa aatttttcaa aaaatggtca aaaaactgca tttgtgatga aaaaataatg
      781 cgttgcgaat gtggaaataa ccatagccta gggcaaataa taaccaaaaa agctataagt
      841 gcaagcaagg aagaactttt aaaaaattct cgctctagtt gtgctaaaat gcgggctttt
      901 tattttaata atttggacaa taaataatgc tagaagatga ttttataaaa gaacgccaaa
      961 acatacgcca aaaaatgctg aaattttctc gcgccataaa tcaaggcaaa ccgcttgatg
     1021 atgatttaag agatgaaatt tctagcgatg atattttaag acgtcgtttt aaaaaaaaga
     1081 ctcctaataa attcttagaa gaacttgatg aagagtatga gtcaaaacat gctaaaaaat
     1141 caaatatata tttaaaagaa gatctaatca atgttaaatt agaagaaaag caatctcttg
     1201 ctaaaaaaat tttttccaaa atgaaagaaa gaagaaaaga agaaaataaa aaaactaaaa
     1261 aaaatttttt atttagcaga aaaaaagcaa acgaaataaa aaatatccaa accaaaacgc
     1321 aaattcaaac aaaaagcaat caagctacca ctcaaacaaa acaagaaaaa aaggaactta
     1381 caaattctat agaaaaaatt caaaaaacag aaactaaaat acaaaaacct ctaattatag
     1441 aaaaaaaact agatgttaaa aatcaaccta atatcaagaa aagtttagaa aatttacaaa
     1501 aaaaaataac accacaagaa aataaacaag aacttccaaa accatctaat caagctcaaa
     1561 aaaaacaaca aaatgatgaa gatgctcaaa aggcaaaaaa tattttacta gaaggcttct
     1621 ctaatgctac caaagaagat agaaacctaa acttcaatca tcttcttttt gcagctttac
     1681 ttgttagttt tgcattattt ttatttgccc cacaaattta tattagaaat caaatttatt
     1741 atcttagtag agagattgct acattaagaa cagaagaaag tgttttaaac gaggaaaata
     1801 aagacttaaa aagaagactt gaaaatatgc gattccaaaa tcaaatttta gattatttag
     1861 aatgaataat cttatctaaa acatactgct ctaaatttgc ttttggaatt tcttctttta
     1921 aagcttcttt ataaaattca cccgccattg tagagtactt ttcataagca aaataaggaa
     1981 agtgtaaagc ccaggctttt tgtattattt tttttgagat tattttgcga atataaactt
     2041 taaaaatatc atatcctata aatacacaag cagtaaccat aacagcgctc actatgctta
     2101 tatgaaagtc aagctttgtt aaaaaataat gagtaatcaa aagcaatggc aataaaatca
     2161 cagcgcaaaa aacaccaaaa taaatataag aatttagaat tttgaaatta aaatttagct
     2221 tagaaggatc tacaagcatt ccatcgttaa aaagtgcatt tgcctctaat aaatctctta
     2281 taagaacagg ttgctctgat actttaaata aaaaacgaag gctaaattct ttaaattttt
     2341 tcataatcca cgctttattt tttaattaaa attttatcca aagaaa
//
LOCUS       DAPIWU010000138         2340 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.140, whole genome shotgun sequence.
ACCESSION   DAPIWU010000138 DAPIWU010000000
VERSION     DAPIWU010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.140"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..228)
                     /locus_tag="RJ285_001691"
     CDS             complement(<1..228)
                     /locus_tag="RJ285_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384424.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQARQENKECLDNIYFN"
     gene            complement(225..887)
                     /locus_tag="RJ285_001692"
     CDS             complement(225..887)
                     /locus_tag="RJ285_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384425.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLSQQGLISKNISSFNLQNNKLKICLKRQTKYCLKKRI
                     LL"
     gene            complement(884..1186)
                     /locus_tag="RJ285_001693"
     CDS             complement(884..1186)
                     /locus_tag="RJ285_001693"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384426.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYTQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(1183..1914)
                     /locus_tag="RJ285_001694"
     CDS             complement(1183..1914)
                     /locus_tag="RJ285_001694"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDV7384427.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALTKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(1914..2303)
                     /gene="fliW"
                     /locus_tag="RJ285_001695"
     CDS             complement(1914..2303)
                     /gene="fliW"
                     /locus_tag="RJ285_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HDV7384428.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
BASE COUNT          793 a          287 c          349 g          911 t
ORIGIN      
        1 attaaaatat atattatcta aacattcttt attttcttgc cttgcttgat ataaaaaata
       61 tttagaaaat tgtgttgcat tatgacttaa aatttgagct tgaaggtagt aataactatc
      121 ttggattatt tttggagtat agctggatat gtttaaggtc aagctcatcc atagacttat
      181 tagtagtatt aaaaaaattg tccaaattaa aacataagct tttttcatag taaaattctt
      241 tttttaagac aatattttgt ttgtcttttt agacaaattt ttaatttatt gttttgcagg
      301 ttaaatgagc ttatgttttt agaaatcaat ccttgttggc ttaattgttc attaaatttt
      361 ggctttattt catatataag ttcttcattt tgcaatttga taactaattg agcttgcaaa
      421 ggaataaaac tgcctgtaaa atttgcagat ataccatttt ccaagataga tattttttca
      481 atcttattaa ttttataagc atagctaata tgttcattgt cgttatataa atcttttcta
      541 ttttggagtt gtgttttaaa atcagaatga ggtgaataaa gtgtatgatt attttctaaa
      601 ataagagcag aattaataag ataaagttta ttatctttta ggctaattaa ctcatctttt
      661 aaaagacatt ttaatgtatt ttgtgaaaat gtaatattaa tacaattttg tattaatttt
      721 tctattttaa gcaagtttaa atgtgcttga gtgataagat tgtttgtatg taaagcagtg
      781 aaatttaaat gataaaaatc cattaaaggt tttgaaagta agctagttat aaaagtaaaa
      841 agtattagtg atattataag ttcaaaaagt gtaaaagctt tgctcattct ttaaaataaa
      901 cgctataatt ttgatcttga aagtataatt tttgaaattg aaatatacca tcattaacaa
      961 actgttcttg taaaactata ggttttaagg ctgaagtttg aagtatgatg gttttaaaaa
     1021 tgggcttttc atataattct tcttgaagtt tatagagtct ttcaaaaata tttaaatttt
     1081 catagttttt gtaaagttga gtatagtaat aaaaaatgcc aatgaaaatt aaagatatga
     1141 tcgttatagc actaatactt tctataagta tgaaagcctt tttcatttag cgctgctagc
     1201 atttatggct tcaaaaaaac ttccgcgaat tcctttttgt tcgagtattt ttatgccttt
     1261 tattgtaact ccgccagggg agcaaatatt ttctttgata atagctggat gttcatgttc
     1321 tagtaaagca ctagagcttt taaataaaga gcgcgtaaga ttgagactaa gttcttttga
     1381 caaaccttca taaactccag cattagcaat gctttccgct ataagtgcta aaaaagcagg
     1441 agcgcagccg ctaatcgcca tagctgcatt catttgtatt tcattatcta atttataagc
     1501 cgagccaaaa gtttttaaaa tgtctaaaat ttcattttca aaatgagagt ttttaagtat
     1561 atatggtgtg gttgaagcct tatatttagc tgctgtattg ggcattattc taacataatt
     1621 ttgagctttg atggtttgta gtttttcaaa atcaacattg gctaaaacag agattaagat
     1681 acgtgcttgt ccttttagca tttgagcaat attttctaaa gcataaggtt taaatgctaa
     1741 aataacatct ttaccttcta tgttaaaatc tttgtaaagt aaggttttaa agccttcttt
     1801 ggtgagggct tgaagttttt ctatacttct tcctactata caaatttcat aatcatcttt
     1861 taacccatag gctaaggctg ttgccataga tccatttgca agtatataga gcattatttt
     1921 ttaatataat tagcaatttg atcagcttga aaaaagtcgg gataattaac tgtatctagt
     1981 atcacttgta ccatagtatt attatcaaga ttaatgacta ctggagctag aaaattcact
     2041 gtcgattctt caatgctttt tgctatggct actatattaa aaattttcat attagattca
     2101 ggtgttaaag aaagaagctc ttgataataa gttggtatat caaattcata atcaggtcta
     2161 atcaaataag gattaattaa aacaaaagaa aagtctttac catcaagact tttaagtctt
     2221 acaaatactt catcgatagt tgaaaattcc atatttttgg tttcttcaaa acctaagata
     2281 gggcatttaa cagctagggt catgttttct cctcaagtta taatgtttaa tattttaaca
//
LOCUS       DAPIWU010000139         2270 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.141, whole genome shotgun sequence.
ACCESSION   DAPIWU010000139 DAPIWU010000000
VERSION     DAPIWU010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.141"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..>2270
                     /locus_tag="RJ285_001696"
     CDS             <1..>2270
                     /locus_tag="RJ285_001696"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024398.1,HMM:NF024914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7384429.1"
                     /translation="EKLDYVYWNTFNATPTHLYYPKERLEYKDILSNVSYHNALESYR
                     ITQSLNYSKKLSVEISKIIEITSKNNIELYTRINDLEVQKAKLNKEKCQFEQDLKVCK
                     EKLKQKDSELKRIENTLSYRIGNRIVKSKNIKDILILPYNLFKEYRNFKLRQKNKNLL
                     FQEKNKFKRNIEFRKNQIFECKIENLDLLKIACIMDEFTYESFKYECDLLQLSLENWK
                     NEIMHFKPSLLFIESAWQGKNSLWKLKISGFSIELQELIGYCKENHIPTIFWNKEDPV
                     HFNTFLPIACSVDFIFTTDIDCVSKYKFYAGHEDVYCLPFAAQTKMYNPIEEFDRKDE
                     FNFAGSYYLRYPQRQLDFDNLINAIKPYKNISIYDRNFNNPHSHYTFPNCYKDMIIGN
                     LPFNEIVKAYKGYKFGITINTVKQSQTMFARRAFELIACNTFVVSNFSRALRNFFGDL
                     VISSDNVNELKDKLKLACEDEMYCKKIKLNALRKVMKEHTYTDRLKFIASVVYKKQFE
                     YKYKFYLLVYVNSQEEYIKALDIFNFQKENKEACLLIYSDKELDFQNNDKYIHISELE
                     ELYEHVKNDKQAYFGMLDIRDFYGENYLLDLVLTLKYSKFNAFGKYSFYEFKDSVISL
                     ENKDYEYKKVDKLFITSSFVKIEFLSKDMLSDFINGQFLYQIEDMFAIDCFNYCKNGS
                     ILTKEQQEYVSSIDKMYSGINIKELNMTSKFKGVLKEDYETPDLIKMDAKFIYENIEK
                     PLSSKIKFVLNENKFM"
BASE COUNT          931 a          206 c          333 g          800 t
ORIGIN      
        1 tagaaaagtt agattatgtt tattggaata cttttaatgc tacgccgaca catttatact
       61 atcctaaaga acgattagaa tataaagata tattatccaa tgtttcttat cacaatgctt
      121 tggaatcata tagaattact caatcattaa attatagtaa aaaattatct gttgaaattt
      181 ctaaaattat cgaaattact tctaagaata atattgaatt atacactaga ataaatgatt
      241 tagaagtgca aaaagctaaa ttaaataaag agaaatgtca atttgaacaa gatttgaagg
      301 tttgcaaaga gaagttaaaa caaaaagata gcgaattgaa aagaatagaa aatactttat
      361 catatagaat aggaaatcgt atagtcaaat ctaaaaatat taaagatatt ctaatccttc
      421 catataattt atttaaagaa tataggaatt ttaaactaag acagaaaaat aaaaatctgt
      481 tatttcaaga aaaaaataag tttaaaagaa atatagagtt tagaaaaaat caaatttttg
      541 aatgtaaaat tgaaaactta gatttattga aaattgcatg tataatggat gaatttacat
      601 atgaatcctt taaatatgaa tgtgatttat tacaattaag tctagaaaat tggaaaaatg
      661 aaattatgca ctttaaaccc agtttactat ttatagagtc agcgtggcaa ggaaagaatt
      721 ctttgtggaa attaaagatt tcaggatttt ccatagagct tcaagagttg attggatatt
      781 gcaaggaaaa tcatattcct actatatttt ggaacaaaga agatcctgta cattttaata
      841 cttttttacc aatagcttgt tctgttgatt ttatttttac tacagatatc gactgtgtct
      901 caaagtataa attttatgcc ggacatgaag atgtgtattg tttacctttt gcagctcaaa
      961 caaaaatgta taatcctata gaagaatttg atcgcaaaga tgaatttaat ttcgctggat
     1021 catattattt gcgatatcct caaagacaat tggactttga caatcttata aatgcgataa
     1081 aaccttataa aaatataagt atttatgata gaaattttaa taatcctcat tctcattata
     1141 cttttcctaa ttgttataaa gatatgatta taggaaattt accttttaat gagattgtaa
     1201 aagcatataa gggttataaa tttgggataa caataaatac tgttaagcaa tctcaaacaa
     1261 tgtttgctag aagagctttt gaacttatag catgtaatac atttgttgta agtaattttt
     1321 ctagagcttt aagaaatttt ttcggagatt tagtgatatc atctgacaat gtaaatgagt
     1381 taaaagataa attaaagtta gcatgtgaag atgaaatgta ttgcaagaaa ataaaattaa
     1441 atgctttaag aaaagtaatg aaagagcata catatacaga tagattaaaa tttatagctt
     1501 ctgttgttta taaaaaacaa tttgaatata agtacaaatt ttatttattg gtgtatgtaa
     1561 attcgcaaga agaatatatt aaagcattgg atatttttaa tttccaaaaa gaaaacaaag
     1621 aagcttgttt gttgatttat agtgataaag aattggattt tcaaaataat gataaatata
     1681 tacatatttc agaattagaa gaattatatg aacatgtgaa aaatgacaaa caagcatatt
     1741 ttgggatgtt ggatattaga gatttttatg gtgaaaatta tttgctagat ttggttttaa
     1801 ctttaaaata ctctaaattt aatgcttttg gaaaatatag tttttatgaa tttaaagata
     1861 gtgtaataag tttggaaaat aaagattatg aatataaaaa agtagataaa ctttttatta
     1921 cttcatcttt tgtaaaaata gaatttctta gtaaagatat gttatctgat tttatcaatg
     1981 ggcaattttt atatcaaatc gaagatatgt ttgctattga ttgttttaat tattgtaaaa
     2041 atggttctat tcttacgaaa gaacagcaag aatatgtatc tagtatagat aaaatgtatt
     2101 ctgggataaa cattaaagaa ttaaatatga catcaaaatt caaaggggta ttgaaagagg
     2161 attatgaaac tcctgatttg ataaaaatgg atgctaaatt tatatatgaa aatatagaaa
     2221 aaccgttgag ttctaaaatt aaatttgtat taaatgaaaa caaatttatg
//
LOCUS       DAPIWU010000140         2218 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.142, whole genome shotgun sequence.
ACCESSION   DAPIWU010000140 DAPIWU010000000
VERSION     DAPIWU010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2218
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.142"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1500)
                     /locus_tag="RJ285_001697"
     CDS             complement(<1..1500)
                     /locus_tag="RJ285_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7384430.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDIPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELS"
     gene            complement(1517..2164)
                     /locus_tag="RJ285_001698"
     CDS             complement(1517..2164)
                     /locus_tag="RJ285_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDV7384431.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
BASE COUNT          708 a          389 c          260 g          861 t
ORIGIN      
        1 gctaagttct ataaattcca ttctatctct taaaggtgca ggaatattgc taatatcatt
       61 tgctgttgct ataaaaatga ctttacttaa atcaatatta aaatttaaat aataatccct
      121 aaatttagaa ttttgctctg gatctaaaat ttctaaaagc accgcacttg gatcgcctct
      181 aaaactgcga tttaatttat caatttcatc caatacaatt acaggattaa tttgttttgc
      241 ctctatgagt ccttgggtaa tacgtccagg catagcgcct atataagttc tacgatgacc
      301 acgtagctca ttaacatctt caagtccgcc taaggctatg cgaataagct ctctttttaa
      361 agcttttgaa acagaatttg ccagtgaagt tttacccacg ccaggaggtc cataaagaca
      421 aagtataact ttagcaccat ctttttctgc tatttttctt ttttctaaaa gttccctaac
      481 tgcaaaatat tcttctatgc gttcttttgg tttatttaat gcataatgat catggttgag
      541 ctgttttgaa acttctttaa tatcaagttt tttcttagaa attttttcaa aaggaatatc
      601 taatgctgtt tctatgtaag tttgaatcat cgatgcttcg gaattatctt gatgaatgcg
      661 ttcgaatttt tcaatttgtt ttttgatttc tttataagcg tcttcgtgca taaatttctt
      721 ctttaactcc agacgctttt gatactctct aacctcatct tctttttgtg tatcagaacc
      781 aagctctttt tgaatttgtc ttaattgttc ttttaaaaaa tattctttat ttaccttatc
      841 aatacgagaa tgtactttat ttttaatttc tttttgaatt ttattggctt ctatttcttg
      901 ggcaattaaa tctattaatt ttactaattt ttgctcaaga tctgttaaaa caaaaaactc
      961 ataagcaact tgttttttaa tacgcacagt atttaaaatc aaatcacaaa tcctagacgc
     1021 atcaaaacct tcttcaattg ttcttaaaag atctggagaa aaataatgac taatatttgc
     1081 caaatttttt accttctctt ttaaaacttc aagaagcgct tcttttttag ttccttctaa
     1141 aaagtcttct tttataagtt ctatcttggc ttctaaaggt ttattagaaa tttgctctat
     1201 aattttaccc ttagcatatc cttgaaaaag tattttcacc cttccatcgg gtaaaggaac
     1261 ttttcgcatg atagtcccaa tcactccaca attataaatt tcatcaaaat ttcttccatt
     1321 ttccaacttt gaaggtgcaa caaaaagcat actatcattt ttaatcgcaa gatctaaagc
     1381 tttcatattg gatgaatcgt taataaaaat aggagttatc ataaaaggat ataaaaataa
     1441 ttcatcttca accaatactg gtaaatttgc tggataattt tgtatctctt caatctgcat
     1501 ttattttcct tgtttattaa aatctttcaa atatacttct ataccaagga agctcaggtt
     1561 tgataatact ttgctgataa aattcacttt cttgaagtct ttgtttataa atttgtgcac
     1621 tttcatcatg ccctatgcgc tggtatagat tttctatagt actattaaga taaaaaaccg
     1681 ctaaattaaa ttttgtaagc attgtttgaa ccaaaggttc atattctgta taaggataat
     1741 ctttcaaaaa agtatctatt tctttttggc tttcaagcat taaagcctga ttacgatttg
     1801 gcactgcaaa tgcatcaaat tttgccttaa ttttaagata acgaatataa tcagcattgc
     1861 gtgaatttcc aaatttttta ttatattcat ctaaataaaa ttcagctaac ttatattcct
     1921 cttcatccat atgagcttgt gctaaaataa ttaaagtagt ttctaataaa ggatcggcaa
     1981 catgctcact tgccatacca ttataatgat catcagcttt ttccaaatcc ttgtcctgca
     2041 aatctttaat aatttgctta taccactcac tagcactaag attgtataaa ccttcatcat
     2101 ttttcgtact acacgcacta aaaaaaacac ttaaaaaaac caataaaaaa ataccttttt
     2161 tcatacttca ccttgattta tattctcaaa aatatatatt ttaacgattt tataatta
//
LOCUS       DAPIWU010000141         2206 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.143, whole genome shotgun sequence.
ACCESSION   DAPIWU010000141 DAPIWU010000000
VERSION     DAPIWU010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.143"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            1..286
                     /locus_tag="RJ285_001699"
                     /pseudo
     CDS             1..286
                     /locus_tag="RJ285_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(294..725)
                     /locus_tag="RJ285_001700"
     CDS             complement(294..725)
                     /locus_tag="RJ285_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDV7384432.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLHKFKG"
     gene            805..>2206
                     /locus_tag="RJ285_001701"
     CDS             805..>2206
                     /locus_tag="RJ285_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7384433.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYHHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIYKAAFIQAIVVIIVVVFSVILLYFIVSKYLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNL
                     TARITANPRNPQLIELKNVLNKLLDVLQVRVGSDMNAIHKIFEEYKSLDFRNKLENAS
                     GSVELTTNALGDEIVKM"
BASE COUNT          799 a          328 c          287 g          792 t
ORIGIN      
        1 atgaaagtag gattttgatt ttgtatcatc ttttaagata caaagaactt tgtgtttgtg
       61 atctacaaga gctcttaaac atgggtcaat caagactttc aagacattta aaaattttaa
      121 aagatgcggg tttttgtatg taaggcgtca aggaacttgg gcgtattatg ggattaataa
      181 tgagctttta aagctgcatt tagatctttt tgaaaatatc aaaaatttag agcttaaaaa
      241 tgctattaaa aaaaatgaaa atattattac ccaaatttgc ccttaatata aaatcaaccc
      301 ttaaacttat gcaatttatc acaaggttga tagtccttgc tttctggatt aaacccatcg
      361 acttcatttg caagcatttc ttcataaatt tttatctttt tgcttaaaac tttttcactt
      421 tcttttaatg ttttaatctg gttttgtaat tttttctttg tttgctttaa catctcttgt
      481 ctttctttag cagtttttat acccaaagag caaagtttta tataatgttt gacttgttct
      541 attggcatac ctgaaattct aagccattct atccatttta cccattctat atcgcttttt
      601 gaaaaatatt tcacactatt ttcatctttt tgaacaaaag gaaacaaacc ttttttagcc
      661 caaaatctta aagtatgagc actaattttt gtttcttttt ctactttttt tatagtataa
      721 gccatatttt ctcctttatt taagataaaa ataaaaattt attttatttt tttgtgataa
      781 aataatagcc aaattattag ttttatgcta aaaataacaa agattaaaag gaaaataatg
      841 aatagtatta aaatcaaact ttccctcatt gcaaatttaa ttgcaatttt tgccttaatt
      901 gttctaggta ttgtaagttt ttattttaca aaaacctcac tatatgaaag cactcttaaa
      961 aatcaaactg acctacttaa agtcacacaa tctaccgttg aagatttccg ttccacaaat
     1021 caatctttta ctagagcttt agaaaaagat atcgcgaact taccttatca atctttaatc
     1081 actgaagaaa atattattaa caatgttggt ccaatattga aatattatca tcatagtata
     1141 aatgcactaa atgtttattt aggtttaaac aatggaaaag ttttacttag tcaaaaatct
     1201 aatgatgcaa aaatgcctga attacgtgat gatttagata taaagacaaa agattggtat
     1261 caagaagctt taaaaacaaa tgatattttt gttacaccag catatttaga tacagtttta
     1321 aaacaatatg taataacgta ttctaaagct atttataaag atggtaaaat cataggggta
     1381 ctgggtgtcg atataccatc agaagatttg caaaatttag ttgcaaaaac ccctggaaat
     1441 acttttttat ttgatcaaaa aaataaaata tttgcagcaa ccaataaaga attattaaat
     1501 ccatccattg atcattctcc tgttctaaat gcatataaac tcaatggtga taacaacttc
     1561 ttctcttata agttaaataa tgaagaaaga cttggagctt gtactaaagt ctttgcttat
     1621 acagcttgta ttaccgaaag cgctgatatt ataaataaac ctatttataa agctgcattt
     1681 attcaagcca ttgttgtcat tattgtagta gtatttagcg tcatcctcct ttatttcatc
     1741 gtatcaaaat acctctcccc acttgcagct atccaaacag gtttaacttc attctttgat
     1801 tttatcaact ataaaacaaa aaatgtttcc actatagaag taaaaagcaa tgatgaattt
     1861 ggacaaatct caaatgctat caatgaaaac attcttgcta ctaaaagagg cttagaacaa
     1921 gacaatcaag ccgttaaaga atcagttcaa accgtatcag ttgtagaagg tggtaatcta
     1981 acagcaagaa ttactgctaa tccaagaaac ccacaactta ttgaacttaa aaatgttcta
     2041 aataaacttc ttgatgtttt acaagttaga gtaggttctg atatgaatgc tattcataaa
     2101 atttttgaag aatacaaaag cttagacttt agaaataaat tagaaaatgc tagcggtagt
     2161 gtagaattaa ctactaatgc tttaggtgat gaaatagtta aaatgc
//
LOCUS       DAPIWU010000142         2162 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.144, whole genome shotgun sequence.
ACCESSION   DAPIWU010000142 DAPIWU010000000
VERSION     DAPIWU010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.144"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..218
                     /locus_tag="RJ285_001702"
     CDS             <1..218
                     /locus_tag="RJ285_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7384434.1"
                     /translation="DFSQETPKEFIFELFAFLKENFSEDKFIFGSNYPVSNLSPKQWI
                     ELIIQSKVFKDLDLIFYKNALSIYKGE"
     gene            219..536
                     /locus_tag="RJ285_001703"
     CDS             219..536
                     /locus_tag="RJ285_001703"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HDV7384435.1"
                     /translation="MQRYGQIIKIKKEKIQKYKNLHAKPYERVCEMIKECNIQNYSIY
                     LFGEYLFAYFEYVGADFEADMAKMARDENTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            550..1989
                     /gene="aldA"
                     /locus_tag="RJ285_001704"
     CDS             550..1989
                     /gene="aldA"
                     /locus_tag="RJ285_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDV7384436.1"
                     /translation="MTTYLNYIDGEFISHNGDFIEVLNPATKEVISKVASASLEDAKR
                     AIEAAKKAQKSWETKPAIERANHLREIASLIRKNANFLTEILMQEQGKTRALASVEVN
                     FAADYMDYTAEWARRYEGEIIQSDRANEHIYLYKSAIGVIGGILPWNFPFFLIARKMA
                     PALLTGNTIVIKPSSETPNNAFEFAKLVSQSSLPKGVFNLVAGKGSVVGYELSSNENI
                     GMVSLTGSVEAGARVMEAAAKNIIKVSLELGGKAPAIVCKDADIDLAVEAIKASRICN
                     NGQVCNCAERAYVHTSIYDEFVDKFVKAMSKVSVGNTLKGDFDMGPLVNQAGVDNALA
                     MLQRATAKGAVVECGGKITDTSGYYFPASVLTNVKHEDEIMQKEIFAPILPIAKFDTL
                     DEAIDMANDCEYGLTSSIYTQNLDIAMRASREIKFGETYINRENFEAMQGFHAGFRKS
                     GIGGADGKHGLEEYLATHVVYLQYNTNKQ"
BASE COUNT          788 a          248 c          445 g          681 t
ORIGIN      
        1 atgatttttc acaagaaact cctaaggaat ttatttttga actttttgct tttttaaaag
       61 aaaattttag cgaggataag tttatatttg gcagtaatta tccagtgtct aatttgtctc
      121 caaagcaatg gattgagttg attatacaaa gtaaggtttt taaagatttg gacttgatat
      181 tttataaaaa tgctttatca atttataaag gagaatgaat gcaaagatac ggtcaaatca
      241 taaagataaa aaaagagaag atacaaaaat ataaaaatct tcatgcaaag ccttatgaaa
      301 gggtttgtga gatgattaaa gaatgtaata tacaaaatta ttccatttat ttgtttggag
      361 aatatttatt tgcatatttt gaatatgtgg gtgctgattt tgaagcagat atggctaaga
      421 tggcaagaga tgaaaacacg caaaaatggt ggaaagtaac agatccttgt caaatatctt
      481 taggttatgc aggacaaaag tggctaaata tggaagaagt gtttcactta gactaaaaaa
      541 ggagaaaaaa tgacaactta tttaaattat attgatggag aatttatctc acataatggg
      601 gattttatcg aagttttaaa tccagctact aaagaagtaa tttcaaaagt agcgagtgct
      661 tctttagaag atgccaaaag agcgattgaa gcagccaaaa aagcacaaaa atcctgggag
      721 actaagccag caattgagag agcaaatcat ttaagagaaa tagctagttt aatacgcaaa
      781 aatgctaatt tcttaacaga aattttaatg caagagcaag gaaaaactag agctttagcc
      841 agcgtggagg ttaattttgc agcagattat atggattata cggccgaatg ggctagaaga
      901 tatgaaggtg aaatcataca aagcgataga gctaatgagc atatatattt atataaaagt
      961 gctattgggg taattggtgg aattttacct tggaattttc catttttctt aatcgcaagg
     1021 aagatggcac ctgctttact aacaggaaat accatagtga taaagccaag tagtgaaact
     1081 ccaaacaatg cttttgaatt tgcaaaactt gtttcgcaaa gttctttacc aaaaggtgtg
     1141 tttaatttgg ttgcaggtaa aggtagtgta gtaggatatg aattatcaag caatgaaaat
     1201 ataggcatgg taagtcttac aggaagtgtt gaagcagggg ctagagtaat ggaagctgca
     1261 gctaaaaata tcataaaggt ttctttagaa cttggcggaa aagctcctgc tatagtgtgt
     1321 aaagatgcgg atattgattt ggcagtagaa gcgattaagg caagtcgaat ttgcaataat
     1381 ggacaggttt gtaattgtgc cgaaagagct tatgtgcata caagcattta tgatgaattt
     1441 gtagataaat ttgtaaaagc catgagtaag gtaagtgttg gaaatacctt aaaaggtgat
     1501 tttgatatgg gaccattggt caatcaagca ggggttgata atgctttagc aatgcttcaa
     1561 agagctacag ctaaaggagc agttgtggaa tgcggtggaa aaatcactga tacaagtggg
     1621 tattattttc ctgcaagtgt tcttactaat gttaagcatg aggatgaaat tatgcaaaaa
     1681 gaaatttttg ctcccatttt gcctattgct aaatttgata cacttgatga agctattgat
     1741 atggcaaatg attgtgaata tggtcttaca agttctattt atacacaaaa tttagatata
     1801 gcaatgagag ctagcagaga aattaaattt ggtgaaactt atattaatcg tgaaaatttt
     1861 gaggctatgc aaggttttca tgcaggcttt agaaaaagtg gcataggcgg agctgatgga
     1921 aaacatggtc ttgaagaata tttagctacc catgtggtat atttgcagta taatactaat
     1981 aaacaatgat ttttatccta tctaaatttt tagataggag ttattataat cttggaatca
     2041 agtatgatgc tttataacta tggattaaac acttttttag taatttctta aaatcaattt
     2101 tggaattttt cattttgtct aaaatgagta agattatttt tataagtaaa acaataatta
     2161 aa
//
LOCUS       DAPIWU010000143         2126 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.145, whole genome shotgun sequence.
ACCESSION   DAPIWU010000143 DAPIWU010000000
VERSION     DAPIWU010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.145"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            87..404
                     /locus_tag="RJ285_001705"
     CDS             87..404
                     /locus_tag="RJ285_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384437.1"
                     /translation="MIGKDFLYSIHKDKKSIYLFCENKSIIDCQSIYDELYKLEATTD
                     FTFEELQNYQAYIFLNSTLLTGSNELPNNPFYFGELDQDNTIKQDTPSYYFSPSNEFK
                     CKS"
     gene            546..2078
                     /locus_tag="RJ285_001706"
     CDS             546..2078
                     /locus_tag="RJ285_001706"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384438.1"
                     /translation="MDEELFWENIVPVGHINEETLKSQIYINNINFSTLQYDETVLPT
                     ELECCYNEFKCYQKSNNEIATLGWAISYQLQVLWQNSPKIDTIQNYHLPVKQNKPNNP
                     QAEQRLKEIQNFLQSKGIEPLILHYTPYPNNTQTQEMKRLRQNSERFSRHVDNKTNEV
                     REERRSIKFYTTLDWDKFYSHFPIIKRLSKKFHTKEDIYTQNFTKQIEIILQKTHNIL
                     ILKNLPQGEYKFDFAIDIKENRSDKNEESYFIIKENDEILKDYKRILDCKPYELDTLN
                     CQYIGVGDDEFFRQIWQNLGINIAEKFKVDFSYARLDKFIFATSPFGLTYNTYETLEQ
                     TYDELMQDLSLYACSGKFSFNFVPSKLSIKKEIQGDREKVLYRVDEMLVYVYDSFDFL
                     DQGHEFDDKGNFIKLGQPVGAWDFNEKSFSIEGSLYQMGTYREWLEWEIDGYKIDCSI
                     SPQRILQSPKTKQYYLYNQDYQDYQKFTPYGLDFKLYSKDFITKLDFKDEAYNVLYNT
                     GV"
BASE COUNT          846 a          269 c          320 g          691 t
ORIGIN      
        1 tgagcaatat ttaggtggag tttgtaaaat atcacaagct ttgtatttta atggaaaagc
       61 taaaataggt attatttagg aaaattatga taggtaaaga ctttttatat tctattcata
      121 aagataaaaa aagtatttat ttgttttgtg aaaataaaag cataattgat tgtcaaagta
      181 tttatgatga actttataaa ttagaagcaa cgacagattt tacttttgaa gaactccaaa
      241 actatcaagc ttatatcttc ctaaactcca ctctccttac aggctcaaat gaacttccta
      301 ataatccttt ttactttgga gaattagatc aagataacac tataaaacaa gatacaccta
      361 gttattattt ttctcctagt aatgaattca aatgcaaatc ataaaggata aaataatata
      421 tgaaaacaag ccaaatatat gaaactttat aaatatgcta gaatgtgctg gactaggtat
      481 tctataaatt taaatgagaa catgcttaag gaatttctaa aatataaaaa caataggatg
      541 aaataatgga tgaagaactt ttttgggaaa acattgttcc agtaggacat attaatgaag
      601 aaactttaaa gagccaaatt tatattaata atataaattt tagcacttta caatatgatg
      661 aaacagtttt acctacagaa ttagagtgtt gttataatga atttaaatgc tatcaaaaaa
      721 gcaataatga aatagcaaca ctaggttggg ctattagcta tcaacttcaa gtattgtggc
      781 aaaatagccc taagatagat acaatacaaa attatcatct ccccgtaaaa caaaataagc
      841 ctaataatcc ccaagcagaa caaagactaa aagaaataca aaatttctta caaagtaaag
      901 gtatagaacc tcttatttta cattacaccc cttatccaaa caacacacaa acccaagaga
      961 tgaaaagact aaggcaaaat tcagagcgtt tttcgcgcca tgtagataat aaaacaaatg
     1021 aagtaagaga agaaaggcgt tctattaaat tttacactac gctagattgg gataagtttt
     1081 attctcattt tcctataata aaaagactaa gtaaaaaatt tcatacaaaa gaagacatat
     1141 acactcaaaa ttttacaaag caaatagaaa taatcttaca aaaaactcat aatattttga
     1201 tattaaaaaa tttacctcaa ggagaatata aatttgattt tgcgatcgat ataaaagaaa
     1261 atcgaagcga taaaaatgaa gaatcttatt tcatcattaa agaaaatgat gaaattttaa
     1321 aagattataa acgcatttta gactgtaagc cctatgagct tgatacttta aattgtcaat
     1381 atataggtgt gggtgatgat gagtttttca gacaaatttg gcaaaattta ggtataaata
     1441 ttgcagagaa atttaaggta gatttttctt atgctagact tgataaattt atttttgcga
     1501 catcgccatt tggacttact tataatacat atgagacttt agagcaaact tatgatgaac
     1561 tcatgcaaga tctatctctt tatgcttgta gtggtaaatt ttcttttaat tttgttcctt
     1621 caaaattaag cattaaaaaa gaaattcaag gagatagaga aaaagtgcta taccgcgttg
     1681 atgaaatgct tgtttatgtt tatgatagct ttgatttttt agatcaagga catgaatttg
     1741 atgataaggg aaattttatc aagctaggac aacctgttgg agcttgggat tttaatgaaa
     1801 agagttttag catagaaggt tctttatatc aaatggggac ttatagagaa tggcttgaat
     1861 gggaaataga tggatataaa attgattgtt caataagccc tcaaagaatt ctgcaatctc
     1921 caaaaaccaa acaatactat ctttacaatc aagattatca agactatcaa aaattcactc
     1981 cttatggttt ggactttaaa ctttatagta aagattttat cactaaactt gattttaaag
     2041 atgaagctta taatgtgctt tataatacag gagtttaaat gggagaagat attatacttt
     2101 ctattttttg gggtttattt ggattt
//
LOCUS       DAPIWU010000144         2056 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.146, whole genome shotgun sequence.
ACCESSION   DAPIWU010000144 DAPIWU010000000
VERSION     DAPIWU010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.146"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            42..>2056
                     /locus_tag="RJ285_001707"
     CDS             42..>2056
                     /locus_tag="RJ285_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7384439.1"
                     /translation="MFRLSSVSSKLLLSVAISVILAIALMIAIVSFQVASYSEKEAKD
                     TILLSSKRYVNYIQGMLNEEVTLTKGVATSLNEMFQNNDHIDIDLIESLIKNTFDSSH
                     YAAYTFLYLKDTTVLSDMQNVDKKYISPDGKTFSMIFFDQIAEKSGGITTISTPNNFS
                     QLNLIQNIEQNAKYGDKDSVFVDSPRKLNYDNNEFLGINFGMPIFNNKGKFIGVIGYT
                     IDLLEISETILDPKFDFFEGDLRFLMNDQGIIAIHKNKNAILKTLFDINKDQSAQLIV
                     EAVKNHKDEILDNYIASTGDLSYASISSFSTLGNSSHWSVIVTAPKKSVLAPLYKLQY
                     IIISVAIIALIAILAVVYFFIRKIIGSRIPLILKSLENFFRFLNHEKIEVQTIEIKAN
                     DELGKMGKIINENILATKRGLEQDNQAVKESVQTVSVVEGGNLTARITANPRNPQLIE
                     LKNVLNRLLDALQARVGSDMNEIQRVFNSYKSLDFTTEVKDANGAVEVTTNALGQEII
                     KMLKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQNVSVK
                     TSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAE
                     RTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQIDQTT"
BASE COUNT          760 a          285 c          324 g          687 t
ORIGIN      
        1 acgagcttta tttttagtaa aaaatttatg tgaggttttt catgtttaga ctatcgagcg
       61 ttagttcaaa actcttatta tcagttgcta ttagtgttat tttagctata gctcttatga
      121 ttgctattgt ttcttttcaa gttgcttcat attcagaaaa agaagccaaa gatactattt
      181 tattatcttc aaaaagatat gtgaattata tacaaggtat gttaaatgaa gaagtcacac
      241 taaccaaagg agttgctaca tcgttaaatg aaatgtttca aaataatgat catatagata
      301 tcgatttaat tgaaagtctt ataaaaaata cttttgatag tagtcactat gcagcatata
      361 catttctcta tttaaaagat actactgtat taagtgatat gcagaatgta gataaaaaat
      421 atattagccc agatggaaaa actttttcta tgatattttt tgatcaaata gcagaaaaat
      481 ctggtggaat aactactatt tcaactccaa acaatttctc tcaattaaat ctaatacaaa
      541 atatcgaaca aaatgcaaaa tatggagata aagactctgt ttttgtagat tctcctagaa
      601 aacttaatta tgataataat gaatttttag gtataaattt cggtatgcct atttttaaca
      661 ataagggcaa atttattgga gttataggat atactataga tttactagaa atttccgaga
      721 ctatattgga tccaaaattc gacttttttg aaggggatct aagattctta atgaacgatc
      781 agggtattat tgctattcat aaaaataaaa atgcaatttt aaaaacttta tttgatatta
      841 acaaagatca atctgctcaa ttaattgttg aggcagttaa aaaccataaa gatgaaatct
      901 tagataatta tattgcctca acaggagatc ttagttatgc tagtatctct tcatttagca
      961 ctttaggtaa ttctagtcat tggagtgtaa ttgtaacagc tcctaaaaaa tcagttttag
     1021 cccctttata taaactacaa tatattatta ttagtgttgc tataatagca ctaattgcta
     1081 ttttggctgt tgtgtacttt tttataagaa aaatcatagg ctctagaatt cctcttatac
     1141 ttaagtcttt ggaaaatttc tttcgctttt taaatcatga aaaaatagaa gttcagacaa
     1201 ttgaaattaa agctaatgat gaattgggca aaatgggtaa aattatcaac gaaaacattc
     1261 ttgctactaa aagaggctta gaacaagaca atcaagccgt taaagaatca gttcaaaccg
     1321 tatcagttgt agaaggtggt aatttaacag caagaatcac tgctaatcca agaaacccac
     1381 aacttattga acttaaaaat gttctaaata gacttcttga tgctttacag gctagagtag
     1441 gttctgatat gaatgaaatt caaagagtat ttaatagtta taaatctctt gactttacta
     1501 ctgaagtaaa agatgccaat ggagctgtag aggtaactac taatgcacta ggacaagaaa
     1561 tcattaaaat gctaaaacaa agttcagact ttgctaatgc tttagctaat gaaagtggaa
     1621 aattacaaac tgctgttcaa agcttaacca cttcttcaaa ttctcaagct caatctttag
     1681 aagaaactgc agcagcttta gaagagatca cttcttctat gcaaaatgtt tcagttaaaa
     1741 ctagtgatgt tatcactcaa tctgaagaga ttaaaaatgt tacaggtatt ataggtgata
     1801 ttgcagatca aatcaatctt ttagctttaa atgcagctat tgaagcagct cgtgctggag
     1861 aacatggtag aggctttgct gttgtggctg atgaagttag aaagttagct gaaagaactc
     1921 aaaagtcttt atcagaaatt gaagctaata ctaatttact tgttcaatct atcaatgata
     1981 tggcagaaag tattaaagaa caaactgcag gtatcactca aatcaatgat agcgtagctc
     2041 aaattgatca aactac
//
LOCUS       DAPIWU010000145         2053 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.147, whole genome shotgun sequence.
ACCESSION   DAPIWU010000145 DAPIWU010000000
VERSION     DAPIWU010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.147"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..1361
                     /locus_tag="RJ285_001708"
     CDS             <1..1361
                     /locus_tag="RJ285_001708"
                     /inference="COORDINATES: protein motif:HMM:NF012744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HDV7384440.1"
                     /translation="LQGIFSNEDFKTVFEFQDENQQKISHNINKAGDIQTLAIPKECK
                     FIRFGLRIQGSGKFQIDNLILDFLNPQPFALIAKSKKLVLTKQYPSYDDLYKYGFLHS
                     RIKAYKEKGILVDVFKLSNTQRYECREFEGIDVMTASNDVLEETLISGQYDHILVHFL
                     DKNMWSVLKKFIDKIKITVWIHGAEIQIWQRREFEFERYSEIEIQRQKKLSDQRVKFW
                     TEIFNANYKNIHFVFVSEYFKNESLGDLKVALEPSKYTIIHNPIDTSMFDYLPKSPDD
                     RKKILSIRPFTSRKYANDLSIKAILELSKREFFKELEFFIAGDGVLFDELTNNLKSFK
                     NITLYKGFLTQKEISNLHKKYGIFLNPTRMDAQGVSRDEAMSSGLVPITNNIAAIPEF
                     IDGECGILVAPENAKLLADAIEFLYKNPNEFMKLSINAANRVRNQCDKNTIISKELDI
                     IL"
     gene            1415..1603
                     /locus_tag="RJ285_001709"
     CDS             1415..1603
                     /locus_tag="RJ285_001709"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384441.1"
                     /translation="MKNNFELIDYYARSSFASLASSAMIEQSVLDNIQSSFQKRMVLR
                     DMDKSFIRKLKKMILIVY"
     gene            1760..2029
                     /locus_tag="RJ285_001710"
     CDS             1760..2029
                     /locus_tag="RJ285_001710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384442.1"
                     /translation="MKNIYDLYMIQDKIVLNKVYWSDVFYNGNKFSISQEELISNNNF
                     LKERYDDFVNFFPKIKCIEYFKDILVLDHKHKWGGDSYALSFRYL"
BASE COUNT          792 a          204 c          333 g          724 t
ORIGIN      
        1 tacttcaagg tattttttca aatgaagatt ttaaaacagt atttgaattt caagatgaaa
       61 accaacaaaa aatttctcat aatattaaca aggctggaga tattcaaact ttggccatac
      121 ctaaagagtg caaatttatc cgttttggtc tacgcataca gggcagcggc aaatttcaaa
      181 tagataattt aattttagat tttttaaatc cacaaccttt tgcacttatt gctaaaagta
      241 aaaaattggt cttaactaaa caatatcctt cttatgatga tttatataaa tatggttttt
      301 tacattcaag gataaaagca tacaaagaaa aaggtatctt agttgatgta tttaagctta
      361 gcaacacgca aagatatgaa tgcagagaat ttgaaggtat tgatgtgatg acagcctcta
      421 atgatgtttt agaagaaact ttaataagtg gacaatatga tcatatatta gtacattttt
      481 tagataaaaa tatgtggagt gtcttaaaga aatttataga taaaattaaa attacagttt
      541 ggattcatgg tgctgaaatt caaatttggc aaagaagaga atttgaattt gaaagatata
      601 gtgaaattga gattcaaagg caaaaaaaac tttctgatca gagagtaaaa ttttggacag
      661 aaatttttaa tgcaaattat aaaaacatac attttgtttt tgtaagcgaa tattttaaaa
      721 atgaaagttt gggtgattta aaagtagctt tagaacctag taagtatact attatacata
      781 acccaataga tacttcaatg tttgactatt tacctaaatc tcctgatgat agaaaaaaaa
      841 ttctttctat ccgtcctttc acctctagaa aatatgcgaa tgatttaagc atcaaggcta
      901 ttttggagct tagtaagaga gaatttttta aagaattaga attttttata gccggtgatg
      961 gggtattatt tgatgaatta actaataatt taaaatcttt taaaaatatt actttgtata
     1021 aaggattttt aacccaaaaa gaaatatcaa atttacataa aaagtatggt atatttttaa
     1081 atcctacaag aatggatgct caaggtgtct ctagagatga ggctatgtca agtggtttgg
     1141 ttccgatcac taacaacatt gcagcaatcc cagaatttat agacggtgaa tgtggaattt
     1201 tagttgctcc agaaaatgca aagttgttag ctgatgcaat tgaattttta tataaaaatc
     1261 caaatgaatt tatgaaatta tctatcaatg ctgcaaatag agtaagaaat caatgtgata
     1321 aaaatacgat tatatctaaa gaattggata taatattatg aaaaaaattt gtatttttgg
     1381 atcgtgtgtt agtagggata taattgaata tgatatgaaa aataattttg aattaatcga
     1441 ttattatgct agaagttcat ttgcttcttt ggcttcaagt gctatgatag agcagagtgt
     1501 tcttgataat atacagtcat cttttcaaaa acgcatggtg ttacgtgata tggataaatc
     1561 ttttataaga aagttaaaaa aaatgatttt gattgtttat tgatcgattt tattgatgat
     1621 agatttcatt tttataaaat attaaaaaat agcatagtta cagtctcaaa tgagtataaa
     1681 aaagcaaaag gaaagttata tagttccaat atgatttatt ctaagagtca agagcatatt
     1741 gatttgtgga ggaaaggtat tgaaaaatat atatgattta tatatgattc aagataaaat
     1801 tgttttaaat aaggtatatt ggtcagatgt tttttataat ggaaataaat tttcaattag
     1861 tcaagaagaa ttgattagca ataataattt tttaaaagaa cgatatgatg attttgttaa
     1921 tttttttcct aaaattaaat gtatagagta ttttaaagat atattagttt tagatcataa
     1981 acataaatgg gggggggact cctatgcatt atcattcaga tacttataaa tatgcatata
     2041 tgaaattatg taa
//
LOCUS       DAPIWU010000146         1976 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.148, whole genome shotgun sequence.
ACCESSION   DAPIWU010000146 DAPIWU010000000
VERSION     DAPIWU010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.148"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..500
                     /locus_tag="RJ285_001711"
     CDS             <1..500
                     /locus_tag="RJ285_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HDV7384443.1"
                     /translation="AQERLFYALAGNIAINNCFNAKAIHAAIGNPEKNQNELEILTPD
                     YTQKASFGSLELKSQNNNEFIGQIPQKKEKVPYLKLDNLNFKRLDLIKIDVEGMEQEV
                     ILGCLNHIKTFKPILQIEIIKSNTRDIINILENLEYEIFQSGINILAIYKADPVINHL
                     SSSNP"
     gene            complement(524..865)
                     /locus_tag="RJ285_001712"
     CDS             complement(524..865)
                     /locus_tag="RJ285_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDV7384444.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(935..1957)
                     /locus_tag="RJ285_001713"
     CDS             complement(935..1957)
                     /locus_tag="RJ285_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7384445.1"
                     /translation="MNLSFKTFDISNTQRSKAKKVQGKKYEIFLNENEHSLITPKVSF
                     KEILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPVF
                     NTHASPISFINKAFKNAPVYNVNDFNEIFAVIITHSHFDHLDAKSVKALKEKARFFIT
                     PLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIIATPAQHSSSRGDGKNKTLWASFV
                     MEFLSVDKRVFFSADGGYFTHFKKIGEYFGDFDLACLESGQFNIAWPYSHSFPEQILK
                     EAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQD
                     FWWKEE"
BASE COUNT          708 a          337 c          247 g          684 t
ORIGIN      
        1 aagcacaaga aagacttttt tatgctttag caggaaatat agcaattaat aattgtttta
       61 atgctaaggc aatacatgca gccattggaa accctgaaaa aaatcaaaat gaacttgaaa
      121 ttttaactcc tgattatact caaaaagctt cttttggaag cttagaatta aaatctcaaa
      181 acaataatga atttatagga caaatacctc aaaaaaaaga aaaagttcct tatttaaaac
      241 ttgataattt aaattttaaa agattagatc ttattaaaat agatgtagaa ggcatggaac
      301 aagaagttat attaggatgt ttaaatcata ttaaaacttt taaacctatt ttacaaattg
      361 aaattattaa atcaaacact cgagatatta tcaatatatt agaaaattta gaatatgaaa
      421 tttttcaatc cggaattaat atcttggcta tttataaggc agatcctgta attaaccatt
      481 taagttcttc aaacccataa accttaaaat aaaaggctta tggctaaggc tttttaagca
      541 cagcatttac cctttgaaca ctatctgatt tatttaaact caatcttatt atagaatttt
      601 ccaatccacc taaagaatgc gctacatttg cctctaggct tatcatatcc aaagcattta
      661 attcaaattt ttccttttcc acttcaaacc aaattttacc gcttaaaact tgaacatgta
      721 tagcaaaagg agctttatgc tctttcatca cgctatcttt agctaataaa atttgaattt
      781 ctttaccttt ttcattatca attaaaacat tgattttcac ttcttttggg ctaaattccg
      841 ctccattcca ttgaatgatt ttcacaaaat ctcctttttt agttttataa aactatagca
      901 aaagccaaaa tataaattat aaacttgtgt taatttattc ttctttccac caaaaatcct
      961 gtttaaattt agctcctact tcataagcct cgcccatttt tggtgtgata aggggtaaat
     1021 ctaaattttc ataaagaaat tttaccacct cattccatgc atgagttcct gctaaaaatc
     1081 tcccccaatg tataggcatg acagcttttg cattaagatc ttttgcttct tttaaaattt
     1141 gctcaggaaa agagtgtgaa tatggccagg cgatattaaa ttgtccgctt tcaagacaag
     1201 ctaagtcaaa atctccaaaa tactcaccta tttttttaaa atgtgtaaaa taccctccat
     1261 ctgcgctaaa aaacactctc ttatctacac ttaaaaattc catcacaaaa gaagcccaaa
     1321 gggttttgtt tttaccatct cccctgcttg aactgtgttg tgcaggtgtt gcaatgattt
     1381 ttaaatcacc aaattctatg ccgctccacc aatcaagctc tatgattttt ttctcactca
     1441 ccccatagct ttttagataa tttcccactt ttaaaggtgt gataaaaaat cgtgcttttt
     1501 cttttaaagc tttgacactc ttagcatcta aatgatcaaa atgtgaatgc gtgataatca
     1561 cagcaaaaat ttcattaaaa tcatttacat tataaacagg agcattttta aaagccttgt
     1621 taataaaaga aataggcgaa gcatgagtgt taaaaacagg atcgatcaaa attttatatt
     1681 ctttaaaact tataaaaagc gaagaatgtc caagccaagt aatatgcgga gtgctaaaac
     1741 cactcaaatc aggcttgaaa aaaggtaact taaaagaagg gatggcattt tttggataaa
     1801 gataataata cctcaaaatt tctttaaaag acactttagg agttataaga ctgtgctcat
     1861 tttcattaag aaaaatttca tattttttac cctgcacttt tttagctttt gatcgttgtg
     1921 tattggaaat atcaaaggtt ttaaatgata aattcaaatt tttcctttta tgttta
//
LOCUS       DAPIWU010000147         1877 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.149, whole genome shotgun sequence.
ACCESSION   DAPIWU010000147 DAPIWU010000000
VERSION     DAPIWU010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.149"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..302
                     /locus_tag="RJ285_001714"
     CDS             <1..302
                     /locus_tag="RJ285_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HDV7384446.1"
                     /translation="MSKSYFIITDSGGIQEEAPSLGKPILVMRETTERPEAVEAGVVK
                     LVGACKQNIIRESQKLIDDQDEYEKMSKAYNPYGDGRACEKIINILIKGKNNESI"
     gene            289..1512
                     /gene="wecC"
                     /locus_tag="RJ285_001715"
     CDS             289..1512
                     /gene="wecC"
                     /locus_tag="RJ285_001715"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002952841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDV7384447.1"
                     /translation="MNQFNKVCVIGLGYIGLPTAAIFASRKIKVIGVDINQNIVDIIN
                     KGKIHIVEPGLDILVHMVVNDGYLKATTLPEEADAFIIAVPTPFKGDNHEPNLDYIEM
                     ASKAIAKVLKKGNLVILESTSPVGTTEQMAKWLAEERSDLSFPHQCGEVSDIKIAHCP
                     ERVLPGQVIRELVENDRIIGGMTQKCAEYAIRLYKIFVQGECIMTNARTAEMTKLTEN
                     SFRDLNIAFANELSILCDKLDINVWELIKLANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VYQNPNEAKIIKTAREVNDNKPNFVVQKIKKKIKDILGPKIACLGLAFKPDIDDLRES
                     PALDIVIKLASENASQILVVEPNIKQLPLKLQNKRNIKLVCLSQALDEADVVAVLVRH
                     KEFIEVQSDKVVSFC"
     gene            1532..>1877
                     /locus_tag="RJ285_001716"
     CDS             1532..>1877
                     /locus_tag="RJ285_001716"
                     /inference="COORDINATES: protein motif:HMM:NF015786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HDV7384448.1"
                     /translation="MNSNDIVLLKCGEVSYKIYLPNRNIDYIQKKIYNELIPYEYEML
                     QDFLKKAKKNTIIVDIGANIGNHSLYLAAHGFDVCAFEANQTLCDIFKISIKLNGFKN
                     LKLYEFGLSDKKE"
BASE COUNT          727 a          212 c          361 g          577 t
ORIGIN      
        1 ttatgtcaaa atcgtatttt ataattaccg attcgggtgg tatacaggaa gaagctccta
       61 gtttaggaaa gcccatattg gtaatgcgtg aaacaacaga gagaccagaa gccgtagaag
      121 ctggagtggt aaaattagtt ggagcttgta aacaaaatat tataagagaa tcacaaaagt
      181 taattgatga tcaagatgag tatgaaaaaa tgagcaaagc atataatcct tatggagatg
      241 gtagggcttg tgagaaaatt ataaatatat taataaaggg gaaaaataat gaatcaattt
      301 aataaagtat gtgtcattgg actcggttat ataggtcttc ctaccgctgc tatttttgct
      361 agtagaaaaa ttaaggttat aggtgtggat ataaatcaga atatagtaga tattataaat
      421 aaaggaaaaa tccatatagt agagcctgga ttagatattt tggtacatat ggttgtaaat
      481 gatggttatc tcaaagcaac aacattacct gaagaggctg atgcttttat tattgctgtg
      541 ccaactcctt ttaaaggaga taatcacgag ccaaatttag attatattga gatggcatct
      601 aaagcaatag caaaagtttt aaaaaaaggt aatttggtaa tcttggaatc aacatctcca
      661 gttggaacaa cagaacaaat ggcaaagtgg cttgcagaag aaagatcaga tttgagtttt
      721 cctcatcaat gtggcgaagt gtcggatatt aaaatagccc attgtccaga gagggtttta
      781 cctggacaag ttataagaga gcttgtagaa aatgatagaa taattggagg tatgactcaa
      841 aaatgtgctg aatatgcaat aaggctatat aaaatttttg ttcaaggcga atgcattatg
      901 acaaatgcta gaacagcgga aatgactaaa cttactgaaa attcatttag agatttaaat
      961 atagcatttg ctaatgaatt atctatttta tgtgataaat tagatataaa tgtatgggaa
     1021 cttataaaac ttgctaatcg tcatcctaga gttaatattt tgcaaccggg ttgtggagtc
     1081 ggaggacatt gtatagcagt ggatccatgg tttattgtat atcaaaatcc aaatgaagcc
     1141 aagattatta aaacggctag agaagtcaat gacaataaac caaatttcgt tgtgcaaaaa
     1201 ataaagaaaa aaattaaaga tatattaggg cctaagatcg cttgtttagg attggcattt
     1261 aaaccagata ttgatgactt aagagaatct cctgctttag atatagttat aaaacttgca
     1321 agtgaaaatg ctagtcaaat attggttgtt gagccaaata taaaacaact accattaaaa
     1381 ttacaaaata aaagaaatat aaaattagtt tgtctaagtc aagcacttga tgaagcagat
     1441 gttgttgcag tactagtaag acataaagaa tttatcgaag tgcaatccga taaagttgta
     1501 agtttttgtt aataactaag gggattatgt tatgaattct aatgatattg ttttattaaa
     1561 gtgtggagaa gtaagctata agatctatct tccaaataga aatatcgatt atatacaaaa
     1621 aaagatttac aatgagttaa ttccttatga atatgaaatg cttcaagatt ttttaaaaaa
     1681 ggcgaaaaag aatactatta tagttgatat tggagcaaat ataggaaatc attctttata
     1741 tcttgcagca catggctttg atgtatgtgc ttttgaggct aatcaaacac tttgtgatat
     1801 atttaaaata agtataaagt taaatggatt taaaaattta aaattatatg aatttggatt
     1861 atcagacaaa aaagaaa
//
LOCUS       DAPIWU010000148         1869 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.150, whole genome shotgun sequence.
ACCESSION   DAPIWU010000148 DAPIWU010000000
VERSION     DAPIWU010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.150"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            25..597
                     /locus_tag="RJ285_001717"
     CDS             25..597
                     /locus_tag="RJ285_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HDV7384449.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(602..1558)
                     /locus_tag="RJ285_001718"
     CDS             complement(602..1558)
                     /locus_tag="RJ285_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384450.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSRIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCVGKHHVLILNKKNIASITTLIFIGILSIILPRNT
                     TFNSAGLEFHFIALDFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFTAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(1619..1828)
                     /locus_tag="RJ285_001719"
     CDS             complement(1619..1828)
                     /locus_tag="RJ285_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7384451.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
BASE COUNT          751 a          222 c          257 g          639 t
ORIGIN      
        1 aaattactat aaaaaaggaa aaaaatgaaa aaagttttat tgagttcatt ggttgcggtg
       61 tctttgttaa gcacaggttt gtttgctaaa gaatatactt tagataaagc acatacagat
      121 gtaggtttta aaatcaaaca tttacaaatt agcaatgtaa aaggaaattt caaagattat
      181 tctgcggtga ttgattttga tcctgcgagt gctgaattta aaaagcttga tgtaactata
      241 aaaatcgcat ctgtaaatac agaaaatcaa acaagagata atcacttaca acaagatgat
      301 tttttcaaag caaaaaaata tcctgatatg acttttacaa tgaaaaaata tgaaaaaatc
      361 gataatgaaa aaggcaaaat gacaggaact ttaactatag ctggagtttc taaagatatc
      421 gttttagatg ctgaaatcgg cggtgtagct aaaggcaaag atggaaaaga aaaaatagga
      481 ttttctttaa atggaaaaat caaacgctct gattttaaat ttgcgacaag tacttcaact
      541 attactttaa gtgatgatat taatttaaat atcgaagttg aagcgaacga aaaataattt
      601 tttagtctaa gagtcttgct cttagacttt gtaaattttt atccaaattt tcttcacttt
      661 cttgccaaat caatttaaaa tccggtttaa aattttcatt ttctaaatta aattccgtgt
      721 ttttcaaggt ggattctaaa aaagcaagat gatttaaagc ttgattttta tcattaaaaa
      781 ttaaaataaa atcattttct acgataaaaa tttttgctct aaagcgtttt aaaatttttg
      841 caatttgttt taaaatgagt ttggtatagc tttctttggt atcttttagt tcattaaaat
      901 gaagcaaggc aatgatatag ttgttttttc cttttgtaaa gcgtgtaagg cttttttcat
      961 tgggtagctt tgttaaggtg tcaaaaaaag ctaacctata agcgtgattt aaaagataaa
     1021 aacaaaaaac caaacttgca aattcaaaat atcttattcc tgctccttct tggaataaaa
     1081 attgaaaata cgcagtaaaa aatgcgataa gaagataata ttctttagtt ttaaaggttt
     1141 tgataaaaat gagtattaag ccgactaaaa aaaataaaaa tcctaattca ctcacaggtt
     1201 taaaaaaatc taatgcaata aaatgaaatt ctaaaccagc actattaaaa gtagtatttc
     1261 taggtaaaat gatacttaaa atgcctataa aaataagagt tgtaattgaa gcgatatttt
     1321 ttttatttaa aattaaaaca tgatgttttc caacgcaaaa tagagtaaaa atcataggta
     1381 aaaataaagc tacaaataaa ttagcttgaa aaaaacttgt ataaaaataa ggcaacttag
     1441 ctcctaatag cactaaagtc aaaaagaaaa ttcttgaatt tttaaagtaa aaggataata
     1501 caagtgctga aatttcaaaa ataaaactca atgatattaa aaaatctaat aaaaacattt
     1561 caaatccttg attttaataa aagtgataat tgtatagaaa aaagcttaaa agtggatttt
     1621 atttaaattt agcaatctca tcttgtatag tttgttctat atgaagcaat tcttcatgag
     1681 tttttttgct attttctaaa agttcatcaa atttaaagcc aagcataaca atacgatata
     1741 aattgggttt atattttctc caattatata aagtgctaac atcaatgtct agttcatatg
     1801 ccatatcacg cttgctcttt tttgtcattt tttaccttaa aaatttagcc tttaaaaaat
     1861 tttacatta
//
LOCUS       DAPIWU010000149         1696 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.151, whole genome shotgun sequence.
ACCESSION   DAPIWU010000149 DAPIWU010000000
VERSION     DAPIWU010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.151"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(12..278)
                     /locus_tag="RJ285_001720"
     CDS             complement(12..278)
                     /locus_tag="RJ285_001720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384452.1"
                     /translation="MLEMDNNKEFKILRLNKQEILKIGGYGICDSCNRRLSNDGYMIC
                     VLYSCYCEKCYKEWYKVAINHKEDREIEKDVYENIKSKITNIYF"
     gene            complement(283..810)
                     /locus_tag="RJ285_001721"
     CDS             complement(283..810)
                     /locus_tag="RJ285_001721"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384453.1"
                     /translation="MDKILFLRINRVVNILMLIFALFSTIAIALFLSYFIEEENYYAY
                     FVSSFFLVNGFLLTIHLIGEKKCAKEVDYDDNFISKLNNSLRKELEDDLLKLQEYYDG
                     INVLEYKTFALLKCNSYYEKGRINEELIDKIKKYYINLFKKKIAKELEEMQKEKERRN
                     ILKTNQELILKKIGE"
     gene            complement(837..1349)
                     /locus_tag="RJ285_001722"
     CDS             complement(837..1349)
                     /locus_tag="RJ285_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384454.1"
                     /translation="MKKITIVAYAICFLSGLWFLFSSVKDDFGILSFILGIALIYFGV
                     INIKRILNDSNENKTELETLFATANIIFVSISSIFLLMLIAFFTFQNEINIKFFSDQG
                     LVLKNDKKISIYLKGKEIKSFDENKYGFVMAVYGDKHIEVVLQNKENDTFFELRCNEE
                     GCKEILKEDK"
     gene            complement(1346..1696)
                     /locus_tag="RJ285_001723"
     CDS             complement(1346..1696)
                     /locus_tag="RJ285_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384455.1"
                     /translation="MFIAIIALICIFKNEIWEFVKFIFSNLDFICGNFANFVGEDNIV
                     FFPITTLLIVFTIAICAVWGLSNVLSLSLFIMPIFVAVFYIFNIDISLKNLYGSYFIF
                     LIIINGLSWSVNQR"
BASE COUNT          651 a          265 c          143 g          637 t
ORIGIN      
        1 attaataaga actaaaaata aatattagtt attttcgatt taatattttc ataaacatct
       61 ttttcaattt ctctatcttc tttatggtta attgcaactt tataccattc tttgtagcat
      121 ttttcacaat aacagctata taaaacacaa atcatatatc catcattgct taatcttcta
      181 ttacaactat cgcaaatgcc ataacctcca atttttaaaa tttcttgttt atttagtctt
      241 aagattttaa attctttatt attatccatc tctagcattt tattactctc ctatcttttt
      301 caagattagc tcttgatttg tttttaaaat atttcttctc tctttctctt tctgcatttc
      361 ttctaattct tttgctattt tctttttaaa aagattaatg taatattttt tgattttatc
      421 tatgagttcc tcattaattc tgcctttttc ataataagaa ttacatttta acaaagcaaa
      481 agttttgtat tctaaaacat taattccatc atagtattcc tgaagcttta aaagatcatc
      541 ttctaattct tttctcaaag agttgttaag tttactgata aaattatcat cataatccac
      601 ttcttttgca cacttttttt caccaattaa atgaatagtt agcaaaaacc cgttcactag
      661 aaaaaaacta gatacaaaat aagcatagta attttcttct tctataaaat aggataaaaa
      721 tagtgcaata gcgatagttg aaaacaaggc aaaaattaac ataaggatat taacaacacg
      781 atttattctc aaaaacaaaa ttttatccac aatctttttt gacaaattta ctactctcat
      841 ttatcctcct ttaatatttc tttgcaacct tcctcattac atcttaactc aaaaaaggta
      901 tcgttttctt tgttttgcaa aacaacttca atgtgtttat cgccataaac agccattaca
      961 aatccatatt tgttttcatc aaagctttta atctcttttc cttttaaata aatagaaatc
     1021 tttttatcat tttttaatac aagtccttga tccgaaaaga atttaatatt tatttcattt
     1081 tgaaaagtaa aaaaggcaat aagcattaaa agaaaaatag aacttatcga tacaaaaata
     1141 atatttgctg tagcaaatag agtttcaagc tcggttttat tctcgttaga atcattcaaa
     1201 attcttttta tattaataac accaaaataa ataagtgcaa ttccaagaat aaaagataag
     1261 ataccaaaat catctttaac actactaaat aaaaaccata agcctgataa aaaacatatt
     1321 gcgtatgcta ctattgtaat ttttttcatc tttgatttac actccatgaa agaccattaa
     1381 taatgattaa aaatataaaa taagagccat aaaggttttt taaacttata tcaatattaa
     1441 aaatataaaa aaccgcgaca aatataggca ttataaataa tgagagagat aaaacattag
     1501 ataatcccca aacagcacaa atagctatag taaatactat taaaagagtt gtaattggaa
     1561 aaaatactat attatcttcg cctacaaaat ttgcaaaatt accacatatg aaatctaaat
     1621 tagaaaaaat aaattttaca aattcccaaa tttcattttt aaaaatgcaa attaaagcga
     1681 taattgctat aaaaat
//
LOCUS       DAPIWU010000150         1639 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.152, whole genome shotgun sequence.
ACCESSION   DAPIWU010000150 DAPIWU010000000
VERSION     DAPIWU010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.152"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            128..1372
                     /locus_tag="RJ285_001724"
     CDS             128..1372
                     /locus_tag="RJ285_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005020469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384456.1"
                     /translation="MRCRKKTNKILLYDGGAKVGKYTQEYSKALFEAHNIKQNSPYKD
                     YKPQYLDPEFHTGEKSTLLEFKDWQSIYLKDPIKGSIAPWTKAEKAYYKSLKTKKERY
                     KYLVIRSGIRSVVIDIPYEAIGAVDEKGNVDPKYEKLYRIVDDNKHNLRSSLFHNEWG
                     MAAGILGDYKYLANDMFQNGFNARFIQATILYIQLSGGSSILDKPHLLGAVYGYADIA
                     VGSGLVGVHKNPLREQEIKTLAKTLKPDEFGMLPFIDEIMGVDWVIDYNKYRIARDEF
                     GSMYKALRSDIVEGKIKDPRDIDSTYESRREFDHHRGGYYNGMVNGYGTDTPNDWSEE
                     RAQLFNDTLILHAKLAALTPPQGYPNAPYYFTPENLEWYYKRHKLDRLLDPRIPAIYR
                     YNFPQELRAKIRAYAKEHNIKE"
     gene            1395..>1639
                     /locus_tag="RJ285_001725"
     CDS             1395..>1639
                     /locus_tag="RJ285_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384457.1"
                     /translation="MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQE
                     LTYINTYDKYLNLKLDSFYIPSTLLSLLQLTKKSKEA"
BASE COUNT          657 a          202 c          283 g          497 t
ORIGIN      
        1 aaagagtgaa aataatgaat ttcattagct actactatca ttatgaaaaa tggtttatat
       61 atgggttaaa ttaagaaagg ataaaaatga gtgaaactta cgagatttat acacctaatg
      121 gtattatatt agatgtagaa aaaaaacaaa taaaatttta ttatatgatg gaggagctaa
      181 ggtaggcaaa tacacccaag aatattccaa agctttgttt gaagcacaca atatcaaaca
      241 aaactccccc tacaaagact ataaacccca atacctagat cctgaatttc acacagggga
      301 gaaatctact ttacttgaat ttaaagattg gcaaagcata tatttaaaag atcccattaa
      361 aggaagcata gctccttgga ctaaagcaga aaaagcttat tataaatctt taaaaactaa
      421 aaaagaaaga tataaatatt tagttataag aagtggtata agaagtgttg ttatagatat
      481 accttatgaa gctataggag ctgtagatga aaaaggaaat gtagatccta aatatgaaaa
      541 attatataga atagtagatg ataataaaca taatctaaga tcaagtttat ttcataatga
      601 atggggtatg gcagcaggaa tattaggtga ttataaatac ctagctaatg atatgtttca
      661 aaatggtttt aatgcaagat ttatacaagc tactatactt tatatacaac taagtggagg
      721 aagtagtata ttagataaac ctcatttatt aggtgctgtt tatggttatg cagatattgc
      781 tgtaggaagt ggtttagtag gagtgcataa aaatccttta agagaacaag agattaaaac
      841 cttagctaag actttaaaac ctgatgaatt tggtatgctt ccttttatag atgagattat
      901 gggagtagat tgggtgattg attataataa atatagaatt gctcgcgatg aatttggaag
      961 tatgtataaa gccttaagaa gtgatatagt tgagggcaaa ataaaagatc caagggatat
     1021 agattctact tatgaaagca gaagagaatt tgatcatcat aggggagggt attataatgg
     1081 catggtaaat ggctatggaa cagatacacc taatgattgg agtgaagaaa gagctcaact
     1141 ttttaatgat actttaatat tacatgccaa attagcagcc ctcactcctc ctcaaggcta
     1201 tcctaatgca ccttattatt ttacccctga aaatctagaa tggtattata aaagacataa
     1261 gcttgataga cttcttgatc caagaattcc tgctatatat agatataatt ttccgcaaga
     1321 acttcgagct aagataagag cttatgctaa agagcataat ataaaagagt aaaccacaaa
     1381 agaaaggaaa aacaatgcaa aaaatacttc aaatcgattt agaaaaaaga aaagctttag
     1441 agaatttcaa aaatctagct ttattaggat taggtggaac aatgctttta aatttaaaag
     1501 aacaagcttt ggattttagt caagaattaa cttatataaa tacttatgat aagtatttaa
     1561 atttaaagct tgattctttt tatatccctt ctacactttt atctttgctt caattaacta
     1621 agaaaagcaa agaagcttt
//
LOCUS       DAPIWU010000151         1637 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.153, whole genome shotgun sequence.
ACCESSION   DAPIWU010000151 DAPIWU010000000
VERSION     DAPIWU010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.153"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            32..547
                     /locus_tag="RJ285_001726"
     CDS             32..547
                     /locus_tag="RJ285_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384458.1"
                     /translation="MLKKLVNCLILGSLFTSSAFAGDFLAKVSNGALSDNSQGVKALN
                     LDEMKQVKGGYQVLTSKLGNSEYIALAIPDNTTTYKQLVAIYTVTGDNTFSNTFLGYT
                     VKRNIAISSSGKPYVLFNYGVALLDRQTGLHRVNSSEILNNNQVIKELTMKYKTQFES
                     NLGGWTARARR"
     gene            617..>1637
                     /locus_tag="RJ285_001727"
     CDS             617..>1637
                     /locus_tag="RJ285_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384459.1"
                     /translation="MINGINSYSSYNYTNTFSNNTSNIKSSNVANDNSSLVSDKSRAV
                     SKMLGYGVDKDGFFTSDFNEAAGLPKDYKIYAKDIENFVNIQTKSLLSSYINIDIAKS
                     IGNAYKVFSQLLNDELNNKINFTKEDLVKIPQGFEFNQNTLEINKKYNLNDKEYKDFM
                     SNYQNYSPTSHNIKIMTFFSLDDKSDIFKYSLIDPTPYSNNDKTITKSGIFMTFFTGF
                     QAKNYFIEGQTSILGKMQGFDKTMSQSEIDNLNKFISENSMNFKGDIFKLFDLLNSDM
                     SIDDFKQKILEQKENLNNPTKNTNNKETSEEDKKKPFKPIQAQNSSETYKDDNKMNEL
                     LKKLLE"
BASE COUNT          685 a          186 c          241 g          525 t
ORIGIN      
        1 agagtaaaat agttaagaaa aggagaatta tatgttaaaa aaattagtaa attgtttaat
       61 tttgggttct ttatttacaa gttctgcttt tgctggggat tttttagcta aggttagtaa
      121 tggtgcttta agtgataatt ctcaaggagt taaggctctt aatttagatg agatgaaaca
      181 agttaagggt ggatatcaag ttcttacaag caaacttgga aattctgaat atatagcatt
      241 agctattcca gataatacaa caacatataa acagttggta gccatttata ccgtaactgg
      301 cgataacact ttttcaaata catttttagg ttatacagta aaaagaaata tcgcaatatc
      361 aagctcggga aaaccttatg ttctttttaa ctatggtgtt gcactacttg atagacaaac
      421 ggggttgcat agagttaatt cgagtgagat tttaaataat aatcaggtta ttaaagaatt
      481 aactatgaaa tataaaactc aatttgaaag taatcttggt ggctggactg ctagagctag
      541 aagataaaaa acttatgaaa aaatcatttt tgccgattta tcttataaat aaaactttac
      601 ttacaggaag gtaaaaatga ttaatggtat aaattcttat tcaagctaca attacacaaa
      661 tacttttagt aataatactt caaatataaa atcatctaat gttgcaaatg ataactcaag
      721 ccttgtaagc gataaatcta gggcagtaag taaaatgcta ggatatggcg tagataaaga
      781 tggctttttt acaagcgatt ttaacgaagc tgcaggctta ccaaaagatt ataagattta
      841 tgctaaagat atagaaaatt ttgttaatat tcaaacaaaa agtctattat caagttatat
      901 taatattgat atagcaaaaa gtataggaaa tgcttataaa gtattttcac aacttttaaa
      961 tgatgagtta aacaataaaa tcaattttac aaaagaagac ttagtaaaaa taccacaagg
     1021 tttcgaattt aatcaaaata ctttggagat aaataaaaaa tataatttaa atgataaaga
     1081 gtataaagat tttatgtcta attatcaaaa ttactctccg acttcccata atataaaaat
     1141 aatgactttt ttctcacttg atgataaaag tgatattttt aaatattctt taatagatcc
     1201 tactccttat agtaataatg ataaaactat aacaaaaagt ggtattttta tgactttctt
     1261 tactggattt caagcaaaaa actattttat cgaaggacaa acaagtattt taggcaaaat
     1321 gcaaggattt gataaaacta tgagtcaaag tgaaattgat aatttaaaca aattcataag
     1381 tgaaaatagt atgaatttta aaggagatat ttttaagctt tttgatttat taaattcaga
     1441 tatgagcatt gatgatttta aacaaaaaat actagaacaa aaagaaaatt taaacaatcc
     1501 tacaaaaaat acaaataaca aagaaacttc agaagaagac aaaaaaaagc catttaaacc
     1561 tatacaagcg caaaattcaa gcgaaaccta taaagatgat aataaaatga atgagctttt
     1621 aaaaaagcta ctggaaa
//
LOCUS       DAPIWU010000152         1625 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.154, whole genome shotgun sequence.
ACCESSION   DAPIWU010000152 DAPIWU010000000
VERSION     DAPIWU010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.154"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            158..>1625
                     /locus_tag="RJ285_001728"
     CDS             158..>1625
                     /locus_tag="RJ285_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HDV7384460.1"
                     /translation="MKTQINNLKDYAELAWASYFYFDFLNTRNIFELDFNQEKIQEEN
                     SLRGYREIKVNLEHVVSQKHKDKEVLIDLRQDDAWQSKMLNFFDEKTNFDKLNGEFGE
                     LQTKNFIQRYEVQFHQPNTTSGFSATLFYDKEKDEFIVGFRGTETDNFISSIQDIVQD
                     ITLSLNGNIQSSFLLEFLEQVNKIIKNKHKRIIFVGHSLGGYLAQMALIYCDIKYKDK
                     LSFSPNEVYTFNAPSVYGWNFPNIAINPNTIKIMQDLLGKYTIDVSEKITHIYDNGKI
                     EIIASAQYGASNALGIYTGKNDHSIKPLVNTLYFYSYLLELDANYNKVKDKSLSECIE
                     YLNHFMKNIQIYTETFVLKNNAINNKNFALKNGPLGLFRSSPEKINHFEYFLSLIATI
                     MQETNGILEELGDNYYASYKAPTISQTKIIDFILKAQKKEKYILILDKNDFNKYRKDC
                     SFINNQENLAHKIAIGEFRIFIVVYKDMKCLENINNITK"
BASE COUNT          658 a          184 c          221 g          562 t
ORIGIN      
        1 gatttataaa aaagcaagaa atacaaaaaa tatatttgtt gctatttgtt gctactattg
       61 attaatagaa ataatagtaa ttttgagctg tacttaatta ttattgtgat acatattata
      121 atatttgcaa taatttattt aattaaaaga aataaaaatg aaaactcaaa tcaataattt
      181 aaaagattat gcagaacttg catgggctag ttatttttat tttgattttt taaatactag
      241 aaatatattt gagttagatt ttaatcaaga aaaaattcaa gaagaaaatt ctcttagagg
      301 ctatagagaa ataaaggtaa atttagaaca tgttgtcagt caaaaacata aagataaaga
      361 agtattgatt gatttaagac aagatgatgc ttggcaatca aaaatgttaa atttctttga
      421 tgaaaagaca aattttgata aactaaatgg agaatttgga gaattacaga ctaaaaattt
      481 cattcaaaga tatgaggttc aatttcatca gcctaacact acaagtggct ttagtgctac
      541 tttgttttat gataaagaaa aagatgaatt tatagtagga tttaggggaa ctgaaactga
      601 taattttatt agctcgattc aagatatagt tcaagacata actctatccc tcaatggcaa
      661 tatccaatct tcttttcttt tagaattttt agaacaagta aataaaataa tcaaaaacaa
      721 acacaaaaga attatatttg taggacactc attgggtggg tatttagctc aaatggcttt
      781 gatatattgc gatattaaat ataaagacaa attatctttt agccctaatg aagtttatac
      841 ttttaatgcc cctagtgttt atggttggaa ttttcctaat atagctatca accctaatac
      901 tataaaaatt atgcaagatc ttttaggaaa atacactata gatgtttcag aaaaaatcac
      961 tcatatttat gataatggta aaattgaaat cattgcttca gctcaatatg gtgcaagcaa
     1021 tgctttaggt atatatacag ggaaaaatga tcactctata aaacctcttg ttaatactct
     1081 ctatttttat tcctatcttt tagaattaga tgctaactat aacaaagtca aagataaaag
     1141 ccttagtgag tgtatagagt atcttaatca ttttatgaaa aatattcaaa tttatacaga
     1201 aacttttgtg ttaaaaaata atgctattaa taataaaaat ttcgctctta aaaatggacc
     1261 tcttggactt tttagaagtt ctccagaaaa aatcaatcat tttgaatatt ttctttcatt
     1321 aatagccacc ataatgcaag aaacaaatgg tattttagaa gagcttggag ataattatta
     1381 tgcaagctat aaagctccta ccattagtca aacaaaaatc atagatttta ttttaaaggc
     1441 gcaaaaaaaa gaaaaataca ttttaattct tgataaaaat gattttaata aatacagaaa
     1501 agattgttcc tttattaata atcaagaaaa cttagctcat aaaattgcca ttggggaatt
     1561 tagaattttt attgtggttt ataaagatat gaaatgtctt gaaaatatta ataatataac
     1621 aaaaa
//
LOCUS       DAPIWU010000153         1588 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.155, whole genome shotgun sequence.
ACCESSION   DAPIWU010000153 DAPIWU010000000
VERSION     DAPIWU010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.155"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..1423
                     /locus_tag="RJ285_001729"
     CDS             <1..1423
                     /locus_tag="RJ285_001729"
                     /inference="COORDINATES: protein motif:HMM:NF019846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDV7384461.1"
                     /translation="IVKDINDRGHEVGLHYHANVSSKWQKNFPDYSLEEQTEILKYGR
                     DFIFNIIKKYPVSFRGGGYQINMNTFKALEYSGFKYDSSAFVSYKQDMIYKSINKVVQ
                     YGNIIEFPVSTNFLFNYPMKLDLNTQGNARDMLDIMSSHRFNGLENIVIMLHSFSFIK
                     WYKGNDDKLKSKLKFTGNRYAIGVNNNLINEFELFCKSISDNEEFENALFENLTLAEI
                     ESSLANEKDFVPKDIIKYSNEKSTCPICENNVSFQEYRNRKNAICPKCRSLERMRFKY
                     LYLKRFLHINTMKNKNILHIGPAMCVYNKLRSLNQINYITSDPFSDSIYNYPLENIPF
                     ADGYFDIIICVGILIHVLDDDKCLREMHRLLSKNGKLILWVGDLYNDKTVERYNRADF
                     DKMKAISFDYPDNLSDGKTILLDDGSIGYNPRYSTRTYGKDFVDKLKNMGYDADIIKS
                     QDIAGYKKYGLREDDVLIIGSRI"
BASE COUNT          617 a          128 c          268 g          575 t
ORIGIN      
        1 aatagttaag gatataaatg atcgaggaca tgaagttggt ttacattatc atgccaatgt
       61 atcatctaag tggcaaaaaa attttccaga ttattcatta gaagagcaga ctgaaatatt
      121 aaaatatggt agagatttta tatttaatat tattaaaaaa tatcctgttt cgtttagagg
      181 gggtggttat caaattaata tgaatacttt taaagcattg gaatatagtg gttttaaata
      241 tgattcatct gcttttgtgt cttataaaca ggatatgatt tataagtcta ttaataaagt
      301 ggtgcaatat ggtaatatta tcgaatttcc agtatctaca aattttttat ttaattatcc
      361 tatgaaattg gatttaaata ctcaaggaaa tgcaagagat atgttagaca taatgagttc
      421 acatagattc aatggccttg agaatatagt gataatgttg cattcttttt cttttataaa
      481 atggtataaa ggaaatgatg ataagttaaa atcaaaattg aaatttacgg gtaatagata
      541 tgcaataggt gttaataata atttaattaa tgaattcgag ttattttgta aaagtatttc
      601 agataatgaa gagtttgaaa atgcactgtt tgaaaattta actttagcag aaattgaaag
      661 ttccttggca aatgaaaaag attttgttcc aaaagatatc ataaaatata gtaatgagaa
      721 gagtacttgt cctatatgtg agaataatgt ctcttttcaa gaatatagaa atagaaaaaa
      781 cgctatttgt ccaaaatgta gatctttaga aagaatgaga tttaaatatc tgtatttaaa
      841 aagattttta catataaata ctatgaaaaa taaaaatatt ttacacatag gtcctgctat
      901 gtgtgtatat aataagttaa gatcgttaaa tcaaattaac tatataactt ctgatccatt
      961 ttctgattct atatataatt atccattgga aaatattcca tttgcagatg ggtattttga
     1021 tattattata tgtgtaggta ttttaattca tgtattagat gatgataaat gtttaagaga
     1081 gatgcataga ttattatcta aaaatggaaa attaatactt tgggttggag atttatataa
     1141 tgataaaact gttgaaaggt ataatagagc tgattttgat aagatgaaag caataagttt
     1201 tgattatcct gataacttgt cagatggaaa gacaatattg ttagatgatg gaagcatagg
     1261 ttataatcca aggtattcga ctagaactta tggtaaagat tttgtagata agttaaagaa
     1321 tatgggttat gatgcagaca ttataaaatc tcaagatata gctggatata aaaaatatgg
     1381 attaagagaa gacgatgttt taattatagg aagtagaata tgagtgaaga tgatttacaa
     1441 tatttaatta aaaataaaat tttaagatta tatgattatg aagacataaa ttttaacatt
     1501 atagattgga catataatcc atatgatcat acaggttata tttttatatt gcataagatg
     1561 gagtatgtat tagatttggc ttattttt
//
LOCUS       DAPIWU010000154         1573 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.156, whole genome shotgun sequence.
ACCESSION   DAPIWU010000154 DAPIWU010000000
VERSION     DAPIWU010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.156"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            267..938
                     /locus_tag="RJ285_001730"
     CDS             267..938
                     /locus_tag="RJ285_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDV7384462.1"
                     /translation="MRVLTSFFSFISDNNDDLFVFSFDMKKIRFRTEKSGEKLNYLNE
                     NEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDEIL
                     KISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNN
                     IYAKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKA
                     ALLNN"
     gene            complement(989..1411)
                     /locus_tag="RJ285_001731"
     CDS             complement(989..1411)
                     /locus_tag="RJ285_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384463.1"
                     /translation="MQSIKIGKYPTTTLSSAREKANIFNNMLTEKIDPKEQIQKEDIK
                     KSKTLIIHLNSYLEAENNLQKIKILVKIYQNLQKCSRTPDLIDIEELEFNKEDIFEEL
                     FYALGGLGGIYSVEMIQSRIANFIKILGGEPKLLLEQF"
BASE COUNT          587 a          177 c          220 g          589 t
ORIGIN      
        1 tgaaacttaa aaatactaca ataagcgaag atttagagcg ttggatagaa acttatttga
       61 aacatattca agcattatcc tattcaaata atactttttt actttatagg cgtattttac
      121 tagaatttgt agaatattct ttagattatc aagatgaaat gcaaataaac gatataaaaa
      181 cgactttttt agtcaatttt cttaattatt tagaaaataa ttcaaaaaat ggcaataaac
      241 tatcaaaaaa aacaaaaata acttatttga gagtattaac tagctttttt tcttttataa
      301 gcgataataa tgatgatttg tttgtttttt cctttgatat gaagaaaatt aggtttagaa
      361 cagaaaaatc aggagaaaaa ttaaattatc ttaatgaaaa tgaaattata aggctaaata
      421 atgttttaga gaaagaaaaa gcaaaaaaag aagtttataa tagttttaga aactctttac
      481 tgataaaact tatgctttat ggaggactta gaatttctga agctttaaat gtaaaacttt
      541 gtgattttga agaggttgat gatgaaatat taaaaatatc cataataggc aagggcggta
      601 aagaacaatt tgcatttatt aaaaaagaag aagtagatga tgagcttgaa tattttaaag
      661 aaaatatcca agatagtgat tacataatgc aaactagcac aggaaaacat ttaaatagaa
      721 gtaatgcttt tttgattgta aataatattt acgctaaagc tttgatcagc aaaaaaggac
      781 ttcatttgct tagacacact ttagccatga gattaacagc caaaggaaca aaccttgtgg
      841 tcatacaaaa aattctaaga catgcaaatc taaatactac tactatatat gccaaagcaa
      901 caaatgatac aataaaagct gcgttattga ataattaatt tttctaaaat tgagtatttg
      961 catagacttc aagaagaagt ctatgtgttt aaaattgttc taataaaagt ttaggttctc
     1021 cgccaagtat tttgatgaaa tttgcaattc tagattgtat catttctacg gaatatatac
     1081 ctcctaaacc gcctaaagca taaaataatt cttcgaaaat gtcttctttg ttaaattcaa
     1141 gttcttctat atcaataaga tcaggagttc ggctacattt ttgtaaattt tgatatattt
     1201 tgactaaaat cttgattttt tgtagattat tttcagcctc taaataagaa tttaagtgta
     1261 ttattagggt ttttgatttt tttatatctt ctttttgaat ttgttccttg ggatcaattt
     1321 tttcagttaa catattatta aaaatatttg ctttttctct tgcgcttgac agtgtggttg
     1381 ttgggtattt tcctatttta atactttgta tttttttgtt taacctatat ctaaaataaa
     1441 aaaaagataa tagtaccttt tagcgaatct tttgcttcga tgtagagatt ttttgtgtat
     1501 gcatctttaa tatatgttct ttttttacaa ttaaagtttt aagttgctta tcattaacaa
     1561 taatcatttt taa
//
LOCUS       DAPIWU010000155         1563 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.157, whole genome shotgun sequence.
ACCESSION   DAPIWU010000155 DAPIWU010000000
VERSION     DAPIWU010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.157"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..1472
                     /locus_tag="RJ285_001732"
     CDS             <1..1472
                     /locus_tag="RJ285_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HDV7384464.1"
                     /translation="NFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDT
                     EFKAFIKDETREILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDT
                     KNLSENVMICDLLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQ
                     IFKALFPCGSITGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQ
                     DEIYTYSTGSGLVWDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQILFLKEHLL
                     RLINSALKFNFNTHKLFKDFYNVLNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFPL
                     PFKNPHKEGILKLILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRT
                     FYNQHSYKWQQNLCYDIAFFNEKDELCEGSRTNLILEKNSQFYTPQIQSGMLNGVYRN
                     FLINLGLIKEKALFKQDLFEAENIYCINSVRGLKKVKLQ"
     gene            1469..>1563
                     /locus_tag="RJ285_001733"
     CDS             1469..>1563
                     /locus_tag="RJ285_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDV7384465.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVI"
BASE COUNT          631 a          221 c          191 g          520 t
ORIGIN      
        1 aaaatttcat caaggttaaa gaggcaatct ccaaaggaag agtttatcaa atcaacctta
       61 ctcaaaattt taaatttcat agcaaaatgg attcttttga actttttaaa cttttgcttt
      121 ctagacaaga tactgaattt aaagctttta taaaagatga aacaagagaa attttatcct
      181 tttctcctga acttttcttc aaaaccaaaa aaagaaaaat atttacaaaa cctatgaaag
      241 gcacaattaa gcgtgataaa gatcctataa aagatgaaga aaataaaatt ttcttgcaaa
      301 atgatacaaa aaatctgagt gaaaatgtta tgatttgtga tcttttacgc aacgatcttt
      361 caaaaatcat cacaaaaaaa agcttaaaaa caaaactttt tgaaattcaa agtcacccta
      421 ctttacatca aatgacttca agcgtacaag gaaaacttaa aaaaaatatt tctttatatc
      481 aaatttttaa agctctcttt ccttgtggtt ctattacagg tgctccaaag cttgaaagta
      541 ttaaatttat tgaagaatta gaacaaagag atcgtggtat ttactgcgga actataggtt
      601 taatacacaa aaataaaaat aaatttagcg tagccatacg caccttagaa aaacaagatg
      661 aaatttatac ttatagcacc ggtagtggct tggtttggga ctcaaaattc aaagatgaat
      721 tcgaagaatt aaaacttaaa agcgcgatct taaatccttg tgattttcat ctttttgaaa
      781 ccatgtattt taaaaattct caaattttat ttttaaaaga acatttatta aggcttataa
      841 attcagctct taaatttaat tttaatactc acaagctctt taaagatttt tataatgttt
      901 taaatcaaaa aagttcttat aaagaatatc aaaattttac actttttaaa ctcgatgaaa
      961 aaattttcca caaaaaacac tctttatttt ataattttcc cctacccttt aaaaatccac
     1021 ataaagaagg aattttaaag cttattttat acaaagacgg aagatacgaa tttcaacaaa
     1081 gtgccttaaa gcaaaattca aacgatattt tgcttttaag tgatgataaa attaactcaa
     1141 aaagtgacaa tctctatcac aaaagctctt tgcgtacttt ttataatcaa cactcataca
     1201 aatggcagca aaacttgtgt tatgacatag ctttttttaa cgaaaaagat gaactttgcg
     1261 aaggctcaag aaccaatctc atcttagaaa aaaactctca attttatact ccacaaattc
     1321 aaagcggtat gttaaatgga gtatatagaa atttcttaat caatcttggt ttgataaaag
     1381 aaaaagcatt atttaaacaa gatttatttg aagcagaaaa tatttattgt attaattccg
     1441 tgcgtggttt aaaaaaggta aaattacaat gaagaaaatt ttatttatag ataattatga
     1501 ttcttttagt tataccatca tctattatct taaagaactt ggttttgaat gtaaagtgat
     1561 aaa
//
LOCUS       DAPIWU010000156         1368 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.158, whole genome shotgun sequence.
ACCESSION   DAPIWU010000156 DAPIWU010000000
VERSION     DAPIWU010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1368
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.158"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>1368)
                     /locus_tag="RJ285_001734"
     CDS             complement(<1..>1368)
                     /locus_tag="RJ285_001734"
                     /inference="COORDINATES: protein motif:HMM:NF019552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HDV7384466.1"
                     /translation="YALFGYFFNKKLITSKLLKETSRKFLGFMLTNKKLYFPIGDSIR
                     EPSVEFLSKIFFPNKKIMDINEILYPYSVMNGSYSSESYFIYRNDSFGEYVHFACTCN
                     WNSDAHKQNDELHFCLQLGDDIIFDDCGYTDFLSINQYNELASEFSHSSITINNHNYI
                     PKKKTNNKSKILSSRANLFGFKVVMQHSRIKKCDICRIINFNSKSYILEINDEIVVEN
                     DLIGEIINFSFVLSPDINILYIGDKYILLSTKSNIRYIFRANSAFDIKVHNKYYAKEY
                     PNLSFTNIIVFSSKISNNKNRYYFKLEKYIYKEENMRYDSFMKLKHVVSSSNIKYYVI
                     KPHNVGFTDTFLSACVVSSFLDSLGLVFKGIVGVDKIDRSEYYQDLYQKINFKNTYNG
                     SYYSIVDNNLDIDNIINEVKNLNKSIDTILLEFNYNHVLRLFELFPIFERKFFFSSFY
                     GYFNN"
BASE COUNT          530 a          191 c          125 g          522 t
ORIGIN      
        1 aattattaaa ataaccataa aaactactaa aaaaaaattt cctttcaaaa attgggaata
       61 attcaaacag tctcaacaca tgattataat taaactctaa aagtattgta tcaatagatt
      121 tatttaaatt tttaacctca ttgataatat tatcaatatc taagttatta tccacaatag
      181 aataatagct tccattatat gtatttttaa agtttatctt ttgatataaa tcttgataat
      241 attcgcttct atcaatttta tctactccaa caataccctt aaaaactaaa cccaaagaat
      301 ctaaaaacga cgagacaaca caagcactta aaaaggtatc tgtaaaacct acattatgtg
      361 gttttattac ataatatttt atattactgc tagatacaac atgttttagt ttcataaaac
      421 tatcataacg catattttcc tccttataaa tatatttttc aagcttaaaa taatatctat
      481 ttttattatt ggatatttta ctagagaaga caattatatt tgtaaaagat aaatttggat
      541 attctttagc ataatattta ttatgaactt tgatatcaaa tgcactattt gctcggaata
      601 tatatcttat attgcttttg gtagacaata aaatatattt atctcctata tataaaatat
      661 ttatatcagg tgataaaaca aaactaaaat taattatttc accaattaaa tcattctcaa
      721 caactatttc gtcatttatt tcgagaatat atgatttact gttaaaatta attattctac
      781 aaatatcaca tttttttatt ctgctatgtt gcattaccac tttaaatcca aataaatttg
      841 cccttgaact aagtatttta gacttattat tagttttttt cttaggaata taattgtgat
      901 tattaatagt tatactagaa tgactaaatt cgctagctaa ttcattatat tgatttatag
      961 ataaaaaatc tgtataacca caatcatcaa aaataatatc atcgcccaat tgcaaacaaa
     1021 aatgtaattc atcattttgt ttatgagcat cagaattcca attacaagta catgcaaagt
     1081 gcacatattc tccaaaagaa tcattcctat atatgaaata agattcactt gaataactac
     1141 cattcataac agaatacgga tagagaattt cgtttatatc cattattttt ttatttggaa
     1201 aaaagatttt agataaaaat tcaacagatg gctctcttat gctatcacct attggaaaat
     1261 ataatttttt attggtcaac atgaatccta aaaatttcct gcttgtttct tttaaaagct
     1321 ttgatgttat tagttttttg ttaaaaaaat aaccaaataa agcgtata
//
LOCUS       DAPIWU010000157         1311 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.159, whole genome shotgun sequence.
ACCESSION   DAPIWU010000157 DAPIWU010000000
VERSION     DAPIWU010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.159"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            85..1293
                     /locus_tag="RJ285_001735"
     CDS             85..1293
                     /locus_tag="RJ285_001735"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7384467.1"
                     /translation="MCKISVIIPIYNVEKYLDECLKSVINQTYKDLDIILVDDGSTDN
                     SLNIAKEYAKKDERIFLIAKGNGGLSSARNAGLEFIKGTKLRDFFENEENIISYKQSN
                     TFKNSTKELTKEEINKNFTKLSKNIIQTKLKNLNDFIIQDLPDNIIHFLDSDDYLELD
                     CIEKCVNEMSKDDIDICTHNIKEFLEEEQVFRQKAECDIYLNCKYTKNISGIDFFKKN
                     NICEFYFAWQGSFRAKLLNIYKLRFTYGIYHEDHDFGTILFLSAKKITCVKEELLIYR
                     IRANSIIKSEKEKIIPQSIPFYLEPLRYYFDDYSKLRAYFKAYCMCVIGVNILLFCKE
                     SNILDKKTPNKIFLHYIHYYLEQYYPLNYLNINDLFTLVGINLKLFRFKIMLRFYFRH
                     PKKIFKKNNA"
BASE COUNT          527 a          132 c          184 g          468 t
ORIGIN      
        1 taattgaatg tgttataatt atcgcttaga ataccatgtt ggagtattgg tattgttaag
       61 cttaaaattt aataaagaat taatgtgtgt aaaatttccg tcataatccc aatctataat
      121 gtagaaaaat acctagatga gtgtttaaaa agcgttataa atcaaactta taaagatcta
      181 gatattattt tagtagatga tggtagtact gataatagct taaatatagc taaagaatat
      241 gccaaaaaag atgaaagaat ttttcttatt gcaaaaggaa atggtggctt aagttcagct
      301 agaaatgcgg gtttggaatt tataaaaggc actaaattaa gagatttttt tgaaaatgaa
      361 gaaaatatta ttagttataa acaatcaaac acttttaaaa atagtacaaa agaacttaca
      421 aaagaagaaa taaataaaaa ctttacaaaa cttagtaaaa atataatcca aacaaagctt
      481 aaaaatctta atgactttat cattcaagat ttacctgata atattattca ctttttagat
      541 tccgatgatt atttagagct tgattgtatt gaaaaatgcg taaatgagat gagtaaagat
      601 gatatagata tttgcacaca taatattaaa gaattccttg aagaagagca agtttttaga
      661 caaaaagcag agtgcgatat ttatttaaat tgtaaataca ctaaaaatat cagtgggatt
      721 gattttttta aaaaaaataa tatttgtgag ttttattttg cttggcaagg aagctttaga
      781 gcaaagttgt taaatattta taagcttcgt tttacttatg ggatttatca cgaagatcat
      841 gattttggaa ctatattatt cttaagtgct aaaaaaataa cttgtgttaa agaagaatta
      901 ttaatttata gaattcgagc taattctata ataaaaagtg aaaaagaaaa gataatacca
      961 caaagcatac ctttttattt agaaccttta agatattatt tcgatgatta ttctaagctt
     1021 agagcttatt ttaaagctta ttgtatgtgt gtaattgggg ttaatatttt gcttttttgc
     1081 aaagaaagta atattttaga caaaaaaact ccaaataaaa tatttttaca ttatattcat
     1141 tattatcttg agcaatacta tcccttaaat tatctcaata taaatgattt atttacttta
     1201 gtgggtatca atttaaaact ttttagattt aaaattatgt taagatttta ttttcgccac
     1261 ccaaaaaaga tttttaagaa aaacaatgcc taaaatttca atcatcttgc c
//
LOCUS       DAPIWU010000158         1300 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.160, whole genome shotgun sequence.
ACCESSION   DAPIWU010000158 DAPIWU010000000
VERSION     DAPIWU010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1300
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.160"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..718
                     /locus_tag="RJ285_001736"
     CDS             <1..718
                     /locus_tag="RJ285_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HDV7384468.1"
                     /translation="TSFVLLDKVDFNFSELKSILEDKFNIKIADENFTKEGVIFSYEN
                     MLVTLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKLEQAKM
                     FTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYPSENGV
                     NAYTYGLRNFDKLELEVCDLNIEEKELFFYIYDIVLHILTYDINLKDKDILKFEDGKE
                     IKFIKSQGISVENESLKIIF"
     gene            782..1198
                     /locus_tag="RJ285_001737"
     CDS             782..1198
                     /locus_tag="RJ285_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDV7384469.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQSNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
BASE COUNT          494 a          141 c          211 g          454 t
ORIGIN      
        1 tacctctttt gttcttcttg ataaagttga ttttaatttt tcggagttaa aaagcatttt
       61 agaagataaa tttaatataa aaatagctga tgaaaatttt accaaagagg gcgtgatttt
      121 ttcatatgaa aatatgttag ttactctaaa tttgattaaa aatcctatac ctaatcacga
      181 agcagaatac tatgcaaatt ttaattttat gtggaaagat gccttagagc aaactaaaaa
      241 acataaagct catcttctta tagcggtgct aagtcaagat caaagcaaat tagaacaagc
      301 taaaatgttt acgaaaattg cagctttatg tttggataat aaacatgctt taggttttta
      361 tacaggtgca gttgttttag agcccagttt ttatatagaa aatgcaaaaa tgttagatga
      421 taatcgcttg ccggtatata attggatata tgttagtgtt tatcctagtg aaaatggagt
      481 taatgcttat acttatgggc ttagaaattt tgataaatta gaacttgaag tttgtgattt
      541 aaacatagaa gaaaaagaac ttttctttta tatttatgat attgttttgc atattttaac
      601 ttatgatatt aatctaaaag ataaagatat tttaaaattt gaagatggaa aagaaataaa
      661 atttataaaa agtcaaggta taagtgttga gaatgaaagc ttgaaaatta ttttttaagt
      721 ttcacattca cttcacagtt ttgagttaaa ctttcgccaa ccaagaaaaa aaggagaaat
      781 tatgaaagca aaactaactt tacttgcttt gttgggtact acggtgcttt tagctaaaga
      841 tatggttgtt cctgctagcg aacttccaaa taatgccaaa gaatttattt ctaaaaattt
      901 taaaaccgct caaattggtt tggtgaaaaa agatatagat tcttatgatg tgattttaaa
      961 tgatggaact gaaattgatt ttatgatcaa tggagagtgg aaagaagttg atggaaaata
     1021 taaggctttg ccacatacta tcttacctaa tgttatgaaa aaagtgagtg caactcaatc
     1081 aaatgctcaa attcttgaag tagacaaaga aattaatggt tataaattta agtttaataa
     1141 caatatggaa gtttatacag atatgcaagg aaatatccta ggtcaaaaat tagattaatt
     1201 tttgaaaatt taactccctt agaaaatttg atgcaaaaat ttggaagcat agtcttccaa
     1261 atttttattt tttgattgca aaacccaaaa tatatttagt
//
LOCUS       DAPIWU010000159         1289 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.161, whole genome shotgun sequence.
ACCESSION   DAPIWU010000159 DAPIWU010000000
VERSION     DAPIWU010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.161"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            124..1188
                     /locus_tag="RJ285_001738"
     CDS             124..1188
                     /locus_tag="RJ285_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDV7384470.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
BASE COUNT          507 a          169 c          190 g          423 t
ORIGIN      
        1 tcaatctttt tgccttgcat ataaaaacaa actttttcct aaaaaagctt ttttttacta
       61 agttaatact aaaatacctt ttctagttaa aaagctaaaa ttttagattt aggaaaagtt
      121 tttatgaaat accctttaga ttgtgaagaa aattttgaaa aatcattctt attttggtta
      181 gcaaaatatg taaaatttaa actcaactca ctatctaaca aagagttaaa aaatccacaa
      241 gctttagcag aagttaattt tgctcttaca aaaggtgtaa aaaatattga tgaacttgac
      301 gctctagcaa aaaaagcaag aaatgctggt ttaagtggag ttaatactta ttttaatcct
      361 ttaaaaaaag tatttgaata tttaaatttt tataagcttt actctttaaa acagattgat
      421 gaagaactca ttgtagaagt tttagcaagt ataacaggtg ctttatcaga tgcaagcaaa
      481 aaaaattacc gtattgctgt gattaatttt tttgattttt tagacaagca aaatgaagaa
      541 gatgaaaaag cacatatttt cgatatcaat cttaaaaact gggcaggtat agcaggttct
      601 aaaggggtaa aattacctga atttatgagt gaagaagagc ttaaaaaatt tcttgatgct
      661 attgaaaatg cagattttaa aaacaatacc atacgcaata aacttattat taaaatcatc
      721 atttttacag gcatacgggt aagtgaagct atcaatatca aaatgggtga tattagcgaa
      781 gaaaacgatc tttatatcat aagaataaga gctaaaggca ataaatatcg tgttgtaatg
      841 ataaaaaaag aacttattta cgatttgctt aaaaatgtaa gtattaatta tatgagtaaa
      901 gacgccctac tttttgtcaa taaaaaaggc actccactga ctcaatctta tgttagtcgc
      961 atagtagaac agcttttatt tcgtgcagga attcgcaaac aaaaaaatgg tgctcatatg
     1021 ttgcgtcata cttttgccac cctgctttat aaaaagcaaa aagatttagt tttagttcaa
     1081 gaagctttag ggcatgcaag tttaaatacc tcaagaattt acactcattt tgataatgat
     1141 aaattaaaac ttgccgcaca ggttgcaaag gaattaagtg actcttgaaa actatgctat
     1201 ttttggtaaa tatttttacc atgatttaaa acacacttta aaagccttta accacaaaga
     1261 aagtaaaaaa tgctttaaat ttatagaaa
//
LOCUS       DAPIWU010000160         1201 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.162, whole genome shotgun sequence.
ACCESSION   DAPIWU010000160 DAPIWU010000000
VERSION     DAPIWU010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1201)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.162"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            110..307
                     /gene="kcuS"
                     /locus_tag="RJ285_001739"
     CDS             110..307
                     /gene="kcuS"
                     /locus_tag="RJ285_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HDV7384471.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(347..760)
                     /locus_tag="RJ285_001740"
     CDS             complement(347..760)
                     /locus_tag="RJ285_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDV7384472.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            822..>1201
                     /locus_tag="RJ285_001741"
     CDS             822..>1201
                     /locus_tag="RJ285_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384473.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLVDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIG"
BASE COUNT          457 a          155 c          193 g          396 t
ORIGIN      
        1 ctttgtgtgt tctttatgat agctaccttg cttgttataa tttcttgtat aggaatttgc
       61 ttaggtaaaa ttaaaattcc tcttaaagaa actaagtata ttaagattga tgaatttcaa
      121 aaaatttaag tattattatg aaaaagccga aaggtttttt catcccttgg tgggactttc
      181 tagttatgat aagtatttag aacacatgaa acaaaaacat ccaggaaaaa ttccaaaaac
      241 cagaggggaa tttttcaaag aatgtctaga taaaaaatat aatagtggcg gtttaaataa
      301 atgctgataa gcttaaagga taaagtttta tcatacaaaa taagctttaa gcatttaaaa
      361 agccatgaat tcttttaagt tcttcactaa taggcttttt ctttccatct cttgtaacac
      421 ttacataagt tactaaagcc gaagttacat taatgcaaga agtacaacct tgagaatcca
      481 ctctttgagc tgtgacttct acttcaacgc tgattgaagt gttgcccaca tttacaactt
      541 tagagtaaca agaaattata tcgcctataa aaacaggttc tttaaaaact actttatcca
      601 tagagatggt tacaacgcgt tcaggagaaa gttctcttgc tgcgatagct cctgctaaat
      661 cgatttgtga aagtatccat ccgccaaaaa tatttcctgc tggatttgtg tcacttggca
      721 tagctacaat ttttaatttt ggttctccca tatctctcat ttttactcct tattttaaaa
      781 aatgaattat aattaaaaaa gttaaaaagg agaataaaag tatgaataat tttaaagaaa
      841 tagctaaatt ggttagaaaa tacaaagaaa gaaataatgc gttatatgag tttttagaca
      901 aagaagatgt gggcgagtat tttagatctt tgatttcttt aagtgagtta aaacaagata
      961 agacaactat gctagccata cttaggcgtt tggttgattt aaaggaagaa aatttagttc
     1021 aagagtggaa aaaaaacaac tttaaggaag ataagattat agagttaaaa cataagttct
     1081 atgaagaggt tagaaagttt tatgaaaaag aacatcaaaa tttaattaat gaaataaaag
     1141 agaaaaaact tttaaataat ttttatcagt ccttaataca aggagtgcat aatataggtt
     1201 t
//
LOCUS       DAPIWU010000161         1143 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.163, whole genome shotgun sequence.
ACCESSION   DAPIWU010000161 DAPIWU010000000
VERSION     DAPIWU010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1143)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.163"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(27..1124)
                     /locus_tag="RJ285_001742"
     CDS             complement(27..1124)
                     /locus_tag="RJ285_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HDV7384474.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLVFGGYFLTLAFKGILW"
BASE COUNT          459 a          231 c          143 g          310 t
ORIGIN      
        1 ttttctaaaa taaaaaataa tttttattac caaagtatac ctttaaaagc taaggttaaa
       61 aaatatcctc caaaaaccaa aacaagccct aaaacaaaag ccaagccaaa taccctagag
      121 ccacttttta aaaatttttt aaagtcaatt tgcaagccta aagctgccat agcaaaaacg
      181 atacataaag tacaaagtgt tttacctaaa gagatgatat cactcgtagc aatacctaaa
      241 atactttctt tgcttgctaa ataagtattt aaaactatca tgcctaaaaa tgcaaaagca
      301 aaataaggta tagtgatact ttttgcagtt tttccactgc ttgaatgttg atttttagcg
      361 aaaaaataag tcactataag caaaaaaggc acaagtaaaa tcactctcat catttttata
      421 atcactgcaa cattagaagc accttgctca aatcctgcca tatcctttgc catttcagca
      481 gcacctgcga catttgccac ctcatgcaac gtagctccca taaaaacacc catagcattt
      541 tgatcaaaaa aaggaaaaag atttaaagaa aaagctatgg gatataagaa cataaataca
      601 agtccaaaaa tcaccaccgt acctacagct aaaattccct taaaaggatc acttttcaaa
      661 cttgactcta gtgctaaaac cgctgccgca ccgcaaatcg cacttccagc tccaacaagc
      721 atagaagttt ctttatcgag tttaaaaatt ttcgttccca caaataaagc aataataaaa
      781 acaaaaaata tcactatagc agaaagcaaa aatcctttca atcctacgct taaaagctca
      841 gttaaagtga tattaaaacc atataaaaca atgccaagtc ttaaaagttt tttcgcacta
      901 aaatgcactc cggcttgaaa atgatgttgg tatttaaaaa accaaggaga aagcaacact
      961 cctatgataa tagcaaaagc agtcgctgct aaatgagtgg tatctttgat actttgaaca
     1021 ctagaaagat acatagcaaa aatcactata caagcagtaa aaagcaaacc cttaaaattt
     1081 gatcgcacta tagccacgct atgtgctaaa aaacttgttt tcatttattt tcctttttgt
     1141 aaa
//
LOCUS       DAPIWU010000162         1135 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.164, whole genome shotgun sequence.
ACCESSION   DAPIWU010000162 DAPIWU010000000
VERSION     DAPIWU010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.164"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            25..1062
                     /locus_tag="RJ285_001743"
     CDS             25..1062
                     /locus_tag="RJ285_001743"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HDV7384475.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDNTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSD
                     PKKIQEYFLKY"
BASE COUNT          397 a          141 c          229 g          368 t
ORIGIN      
        1 cattaaaaaa ttaatataca agagattaaa aaattattta tatgttgtct ttttatagga
       61 gtatgtatga aaaaagctaa atcaaggatt gctattttag gaacaggcgg aacgatagca
      121 ggcttcattg ataacactat tgctacaaca ggatatacgg ccggagccat tgatatagat
      181 gtattaatta aagcagttcc gcaaattaga gatttagcag atattagttg ggagcaaata
      241 gcaaatattg atagttcaaa tatgtgtgat gaaatttggt taaggcttgc taaaaaaatt
      301 gctaagcttt ttgctgaggg gatagacggt gtggtgataa ctcatggtac tgatactatg
      361 gaagaaactg cttatttttt aaatttaacc attaaaagtg ataagcccgt agttctagtt
      421 ggcgctatgc gtccatcaac tgctataagt gcggatggtc cgaaaaatct ttataatgca
      481 gtggcattag ttgccaataa agaagctaag aataagggtg ttatggtagc tataaatgat
      541 aaaattttaa gcgctagagg cgtagtaaaa actcatagtt taaatgttga tgctttctct
      601 tctcctgatt ttggggattt gggttatata gtagatggta aagtcttttt ctataataat
      661 gttactaaag ctcacacaaa aaacgctcct tttgatgtaa gcaaactcac aagtttgcca
      721 aaagtagata ttctttatag ctattcaaat gatggtagtg gtgtcgctgc aaaagcttta
      781 tttgaacatg gaactaaggg catagttgtt gcaggaagtg gagcaggaag tatacacaaa
      841 aatcaaaaag atgttttaaa agagctttta aaaaaagggc ttaaggttgt tgtaagttca
      901 agggttgtag caggttgtgt tgctgtgagt gattcagatg aaaaattagg ttttattagt
      961 gctgaagatt taaatcctca aaaagcaaga gttttgctta tattagcact tacaaaaaca
     1021 agtgatccta aaaaaattca agagtatttt ttaaaatatt aaaatttttt aaatatttct
     1081 aaacttaggg aacttatctt ccctaagtca agcctttcaa tcctattaat agtat
//
LOCUS       DAPIWU010000163         1114 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.165, whole genome shotgun sequence.
ACCESSION   DAPIWU010000163 DAPIWU010000000
VERSION     DAPIWU010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.165"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            8..1114
                     /locus_tag="RJ285_001744"
                     /pseudo
     CDS             8..1114
                     /locus_tag="RJ285_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
BASE COUNT          478 a          141 c          141 g          354 t
ORIGIN      
        1 gaaagccatg aattactatc aagaacttaa aaaatacctc aacaataatc tttttacaag
       61 ctattcttta gaaattgact ttcctaagat ttataatttc aacgcaaatc aaaaagcctt
      121 tagagatatt ttaactaaaa ttacaaaaat ttacgacaaa aacaaattta taaaacaaaa
      181 cgaacatcaa tttgaagatg aatttatatc aaaagtatta gaaattttag agtggtgctt
      241 tgtaagacaa gatgaaaaaa tcatacaagg aaaattggaa aaacctgatt ttctactttt
      301 tagcaatgaa aaattaaaaa caaaatacga aaatttagac aaagaaacaa aaaaatcaag
      361 caatgatttc acaatcattt tagagtcaaa agcttataat atagaaatag acaataaaaa
      421 aagtaaaaga caaccctcac tttcaaattc taagatatct aggcaatctt aagaaaaatt
      481 atggtttttt aaccaatggt agattttggc gtttttatga taattctata ctgaattcaa
      541 acaaagtttt ttacgaaatc aatctagaaa aaatcattga agatcaaaat attgaagctt
      601 ttgcgtattt ttatagtgta tttagcgctt ttaatttcac agaaaaagaa gatcatttag
      661 aaataactct acaaaacaat aaactttcaa aaatcaaaat agaagatgat ttaaaatcta
      721 tcatttacgg aaccaatgga aatgaatctt tatttgaatt cataggctct agaatttaca
      781 ataaaacaaa ggcggattta aaactaatct atgaaaattc tttatatttt atctttaggc
      841 ttttatttat tgcttatttt gaagataaat ttgaaattat actggaaaaa cataagtatt
      901 ttaaaagtaa aatcagtctt agaaccttac ttgaaaattt acaagaagat gaaagctcaa
      961 gtggtggctt tggagaactt gaaaatattt tcaacattta caacaaaggc aaaggcaatt
     1021 ttgacatgcc tgtttttaat ggcggtttgt ttgatgaaag caaaaccgct cttttaagca
     1081 cgccaaaaat ctttaacgat aaagatttaa aatt
//
LOCUS       DAPIWU010000164         1088 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.166, whole genome shotgun sequence.
ACCESSION   DAPIWU010000164 DAPIWU010000000
VERSION     DAPIWU010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.166"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..842
                     /locus_tag="RJ285_001745"
     CDS             <1..842
                     /locus_tag="RJ285_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002926582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7384476.1"
                     /translation="NKIQKYGKFYLEEREVAQGIVPNPDIITKRNISDEMVSKGIKVG
                     DGVFVIEKDFLNVCEYEKKYLKPLYEVEHFGKYYFNKNNSKQLIYTTKNNSKKENIPT
                     IIKHLQKFRSIMDNRRENLNKRLDFYHLHWARDERFFESGEKIVSVRKCIEPIFSYLN
                     NEAYVMLSLNVIKTQRINVKYLTGLLNSKLVAFWLKHKGKMQGNNYQIDKEPLLNIPI
                     VDTNSKNKKLADELINLVDEILKVKEQDKNANTQELENKINSLTYKLYNLTEEEIKNI
                     EGK"
     gene            842..>1088
                     /locus_tag="RJ285_001746"
     CDS             842..>1088
                     /locus_tag="RJ285_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384477.1"
                     /translation="MERNIYEIELEIPNSGIFIMGLENENLIISLDLAKFECKKKLNA
                     GELAKPLHPYIIYEVLEKNNKNNFNGVKIIDKRENENN"
BASE COUNT          496 a          107 c          170 g          315 t
ORIGIN      
        1 tcaataaaat tcaaaaatat gggaaatttt atcttgaaga aagggaagtc gcacaaggga
       61 tagtacctaa tccagacata attacaaaaa gaaatattag cgatgaaatg gtatctaaag
      121 ggattaaagt aggtgatggt gtttttgtga tagaaaagga ctttttaaat gtttgtgagt
      181 atgaaaagaa atatttaaaa cctttgtacg aggttgagca ttttggaaaa tattatttta
      241 acaaaaataa ctcaaaacaa ttaatatata ccacaaaaaa taatagcaaa aaagaaaata
      301 ttcctactat aatcaaacat cttcaaaaat ttagatctat tatggataat agaagagaaa
      361 atttaaataa aagattagat ttttatcatt tgcattgggc aagagatgag aggttttttg
      421 aaagtggaga aaaaatagta agtgtaagaa aatgtataga gccaatcttt tcatatttaa
      481 acaatgaagc ctatgtaatg ttaagtctaa atgttattaa aacacaaaga ataaatgtga
      541 aatatttaac agggctttta aattcaaagc ttgtcgcatt ttggctaaag cataaaggaa
      601 aaatgcaagg caataattat caaatcgaca aagagccttt gttaaatatt cccatagtgg
      661 atacaaattc taaaaataaa aaattagctg atgagcttat aaatttagtc gatgaaattt
      721 taaaagttaa agagcaagac aaaaacgcaa acacccaaga actagaaaac aaaatcaatt
      781 ctttgactta taaactctat aacttaaccg aagaagaaat aaaaaacata gaagggaaat
      841 aatggaaaga aatatatatg aaatcgaact agaaatacca aatagcggta tttttataat
      901 gggtttagaa aatgaaaatt taattatttc tttagattta gctaagtttg aatgtaagaa
      961 aaaattaaat gctggagaat tagctaaacc attgcaccca tatatcattt atgaagtttt
     1021 agaaaaaaat aataaaaaca attttaatgg tgtaaaaatt atagataaaa gagaaaatga
     1081 aaataata
//
LOCUS       DAPIWU010000165         1042 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.167, whole genome shotgun sequence.
ACCESSION   DAPIWU010000165 DAPIWU010000000
VERSION     DAPIWU010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.167"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..234)
                     /locus_tag="RJ285_001747"
     CDS             complement(<1..234)
                     /locus_tag="RJ285_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384478.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDF"
     gene            complement(218..>1042)
                     /locus_tag="RJ285_001748"
     CDS             complement(218..>1042)
                     /locus_tag="RJ285_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HDV7384479.1"
                     /translation="FEKICKEKNTKIFLLDHHQSGEECAQKYSWYLLDSKRCATKIVY
                     DFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGLIANAKEINRVMFKESQ
                     IDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDDTLSNLISYFVVEKLSE
                     LKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFIDVSSRKTLSFRANGKID
                     VSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLIKSKELKKENNESKQ"
BASE COUNT          356 a          177 c          104 g          405 t
ORIGIN      
        1 aaaatctttg tatttatttt ttagaaattc caccacttct aaaatttcat caaccccttc
       61 tttgttggaa ttttcgagta cattatctat attatcaata taagcttcta ttgcattttc
      121 taatttttct cttttaactc cagcgtataa aagcatagct tctaaaacta tgctaagctc
      181 atattgtaaa tcttctaatt cattttttaa ggttttatta ttgttttgat tcattgtttt
      241 cctttttaag ttctttgctt ttaattaaat caataatttg agccttaata taattataat
      301 ttgctccatc tttaaatgtc gcaaaaagtc caccactagc atttttatgt ccgccaccac
      361 ctactaaatt tttagccatt aaacttacat ctatttttcc atttgcacga aaacttaagg
      421 tttttctaga actaacatca ataaaaaagt cataatcagg attttttact aaaaaatcat
      481 ttccaataac agaagtattg cctatatttg aagttaagat gcctttatgg ccttcatatt
      541 ctatgctgaa attttctttt agctcactta gtttttcaac tacaaaataa gaaattaaat
      601 tagaaagagt atcatcattt tttctggcaa aataatcctt ttttataaaa tgagtagcat
      661 tatcgagtaa aatatttgca ttttcttttc ctataaattt ccaagcctta tcaagcaaga
      721 aaaacatata atcaatttga gattctttaa acattacacg atttatttct tttgcattgg
      781 caatcaagcc taaaaaaacc tttccaagtt caaaattttc atcctcgctt agccaaatat
      841 caacagcatt aaccacatca acaaattttg aaagttctaa aacaggagta cagattttag
      901 agaaaaaatc ataaacgatt ttagttgcac atcttttaga atcaagtaaa taccaagaat
      961 atttttgagc acattcttcg ccactttgat gatgatcaag aagaaaaatt ttagtatttt
     1021 tctctttgca aattttttca aa
//
LOCUS       DAPIWU010000166         1005 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.168, whole genome shotgun sequence.
ACCESSION   DAPIWU010000166 DAPIWU010000000
VERSION     DAPIWU010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.168"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            94..993
                     /locus_tag="RJ285_001749"
     CDS             94..993
                     /locus_tag="RJ285_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HDV7384480.1"
                     /translation="MIEKEEIGIAIENYDECISGSKTFVFNTKGGTIGSGDDCTFRIQ
                     DKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNL
                     EFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
                     DYKFIEEEKADDSFLKEIIQKNPNSLEYENVLKSLVKNLKDIKTKQQNSKLNNDYSSI
                     SIKDFESIINNIPLIKSTRLINILALSLIAKELYTPIFEEMEENIFIKYIEAAIQNNI
                     KEDKILFENLTIKALEKYIKDFE"
BASE COUNT          442 a          102 c          147 g          314 t
ORIGIN      
        1 tgaaattatt aacggtgcta gtgaattaaa taatatagtt tatattttaa ataatcttaa
       61 aatagtagaa aatattacag gggtaaataa acaatgatag aaaaagaaga gataggaatt
      121 gctattgaga attatgacga atgtattagt ggttctaaaa catttgtatt taacacaaag
      181 ggtggaacta taggaagcgg tgatgattgc acttttcgta ttcaagataa actagaacaa
      241 atcaaaaata cccatgccat agtatcttat gaagaaggat cttttacaat tgcggctttt
      301 gaagattctg acatttatta taataagtcc ttttctagaa tgccaagtgg ctatgaaata
      361 ataatcagca taggcgatat ttttaaaatc ggtaatttag aatttagatt tgtggatgca
      421 aaaagcattg aagcaagcat taaagaaaat aaaaaatact tagaagatat tgaaaaacgc
      481 aatcattttg atgaaattga aattaaacct agaggaaaaa caagtataaa ttttgacaaa
      541 aacaaagagt taaaagagat tttagaaaat aatgattata aatttatcga agaagaaaag
      601 gcagatgata gctttttaaa agaaataatt caaaaaaatc caaattcatt agaatatgaa
      661 aatgttttaa aaagtttggt aaaaaattta aaagatatta aaacaaaaca acaaaactct
      721 aaattaaata atgattattc ttctattagt atcaaagatt ttgaaagtat tattaataat
      781 atacccttaa tcaaatccac aagattgatc aatattttag cccttagcct aatcgcaaaa
      841 gaattatata ctccaatatt tgaagaaatg gaagaaaata tatttattaa atatattgaa
      901 gctgccatac aaaacaatat caaagaagat aagattcttt ttgaaaatct taccatcaaa
      961 gcattggaaa agtatattaa agattttgag tgatttttac tcttt
//
LOCUS       DAPIWU010000167         1002 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.169, whole genome shotgun sequence.
ACCESSION   DAPIWU010000167 DAPIWU010000000
VERSION     DAPIWU010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.169"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(39..986)
                     /gene="arsP"
                     /locus_tag="RJ285_001750"
                     /pseudo
     CDS             complement(39..986)
                     /gene="arsP"
                     /locus_tag="RJ285_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
BASE COUNT          427 a          131 c          125 g          319 t
ORIGIN      
        1 gccgaaataa tggctaaaaa tttttgcatt ttatttcctt aaattaaatt aataaaaatt
       61 ccaaaagata tagccacgcc taaaataatc ataacaaata aaaataaaaa tttcatttta
      121 aacatttgtt tgagtaaaac aagctcaggt aaagaacatc cagcaccagc gattaaaaaa
      181 ctcataatca ctccttgaga aattcccatt tgtaaaagtg ctaagcctat aggaataata
      241 gtttctactc ttaaataaag gaaaattcct aaaaaagccg ctaatgcaat gcttaaaatt
      301 tcattgccat ttaggtattt ttgtaaaatt tcttgaggaa taaaaccatg aataaaagca
      361 ccgataaaaa ctgccacaac gatataaggt aataattttt tataattttt caaactttct
      421 ttgaataatt ctttatagtt tatcgttata tttttagact tatcttgagt atttgcacag
      481 catgattttt gtttaaaaat aaaattgcta ggattgtgag cgctttgggt aaaaatactt
      541 gattttgtat ttttaggaat atgttttaaa aaactatctt ccttaaattt agaaaaaaca
      601 aaagaaataa taaatatcaa aaatatcaaa aaaaccacat aaatcaaact taactttaaa
      661 ccaaaagtta caaaaagcat ggaaaaaata ataggattaa taagaggcga agtaaaaaga
      721 taagctaaag ctatgctaag ttttactttc gcttctaaaa aagctcttaa aagcggtatg
      781 gtagaacagg aacaaaatgg cgttaaagca cctaaaaata tagctttaaa ataacttgaa
      841 attttgtcac cagcaagttg tttttaaaaa attccttcgt atttttgatt gataatagaa
      901 actaaaaaag aaatagctat aaaaagtaca gaaagctcag taaatagata taaaaactct
      961 ttgaaagtat ttaaaaaaga ctgcattttt tatcctttta aa
//
LOCUS       DAPIWU010000168          991 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.170, whole genome shotgun sequence.
ACCESSION   DAPIWU010000168 DAPIWU010000000
VERSION     DAPIWU010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.170"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            14..>991
                     /locus_tag="RJ285_001751"
     CDS             14..>991
                     /locus_tag="RJ285_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HDV7384481.1"
                     /translation="MFNILLEYNNFLNFKNQKHYLIDNALLTHQYIKYNKKNKKYWVL
                     KLQTENFTFYTTSFKDLNLSKNQFLSLRIITHNINFKDYLSKSFYAPSYDFEKLKEKE
                     YNPIISYFLNQHTNEKIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGLLF
                     SLIFFILAPIYSFFQKRYFPYRNLRLDLSILIFALLLAYACLIGFVPSFVRSLIMAFC
                     IFYLLCKNIKIINFVTLFCSILLCISLYPRLLFSIGFLFSILGVFYIFLYMHHFANKF
                     NNLINIILLNIWTFFAMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVL"
BASE COUNT          320 a          127 c          105 g          439 t
ORIGIN      
        1 tgttgttatt tttattttta atatcctttt agaatataat aattttttaa actttaaaaa
       61 ccaaaaacat taccttatag acaacgctct attaacgcac caatatataa aatataataa
      121 aaaaaataaa aaatactggg ttttaaagtt acaaactgaa aacttcactt tttatactac
      181 aagttttaag gatttaaatt taagcaagaa tcaattttta agccttagaa ttatcaccca
      241 taatattaac tttaaagact atctgagtaa aagtttttac gcaccttctt atgattttga
      301 aaaattaaaa gaaaaagaat acaatcccat tatatcttac ttcttaaatc aacatacaaa
      361 tgaaaagatt aaagaatttt atggtgcttt attttttgca ctgcccatat ctttagagct
      421 tagaaacgat gtaaattact acggtatagc acaccttata gcaattagcg gttatcacat
      481 aggcttactt tttagtttaa ttttctttat tttagctcca atttatagtt ttttccaaaa
      541 aagatatttt ccttatagaa atttacgttt agatttaagt attttaattt ttgcactact
      601 tttagcttat gcttgtttaa taggatttgt cccttctttt gtgcgctcct tgattatggc
      661 tttttgcatt ttttatctat tgtgtaaaaa tataaaaatc attaatttcg ttacgctttt
      721 ttgtagtatt ttattgtgca tttctcttta ccctagactt ttatttagta ttggattttt
      781 attttctatt ttaggtgttt tttatatttt tttatatatg catcattttg caaataaatt
      841 taataatctt ataaatatta ttttgcttaa tatttggact ttttttgcta tggttttacc
      901 tgtgctttat ttttttccac ttataagcta ccaacaaatt ttaggtatta ttttgagtgg
      961 aatttttgta atattttatc ctttagtatt a
//
LOCUS       DAPIWU010000169          912 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.171, whole genome shotgun sequence.
ACCESSION   DAPIWU010000169 DAPIWU010000000
VERSION     DAPIWU010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.171"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..66)
                     /locus_tag="RJ285_001752"
     CDS             complement(<1..66)
                     /locus_tag="RJ285_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HDV7384482.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKI"
     gene            174..878
                     /locus_tag="RJ285_001753"
     CDS             174..878
                     /locus_tag="RJ285_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384483.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAEEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFSIAS"
BASE COUNT          390 a          152 c          144 g          226 t
ORIGIN      
        1 aattttaagc caaggcactt gagcctcctc tttctctata taaatcaaat cattttcata
       61 aatcattaca ttcctttgaa attgtattta tgattatttt acaaaattta tcaaattttt
      121 aagtcaaaat gcgttaaaat tcctaaaaat ttaaaaaaca aaaaggagga taaatgcaaa
      181 ttagttcaag ttataactct tatgattact actctagcaa accttctttt gataaaacaa
      241 atcaatctga ttccactcaa aaagatgaaa aaaatcttag tgaaaataaa gatgataaag
      301 aaaaaaatgg cgaacaaacc caaatggtta atggcgtaga gctaagccaa aaagaagtag
      361 ctcaagttcg cgaactccaa agtatcgata gaaatgtaaa ggctcatgaa gctgcgcatc
      421 aagcagcggg cggcggctta gcaggtgctg caagttttac ttatacaaga ggccctgata
      481 atcaaatgta tgctacagcg ggtgaagttc ctatcagcat gcaaaaagga aacacaccag
      541 aagaaactat agccaatgca agacaaattg cagcagcagc tatggctcct gctgatccta
      601 gcccgcaaga ttataaagtt gcagcaaatg ctacaaaaat ggaatttgaa gcaagagctg
      661 aagcaatgaa gcttaaagcc gaagaagccg aagaaaaaga agaagaaaat aaagaaaaag
      721 atgacaaaaa ttcagaaaat agcctagaaa aaacagataa agattcaaaa aacaacgata
      781 aaaattcaaa ttttgataaa gactttaaaa attttgtcgc tagaacttat caacaaaact
      841 cacaaaataa cgacattaaa ttcagcatcg catcttaaaa ttcttaattt aaataaaaaa
      901 tttccttatg aa
//
LOCUS       DAPIWU010000170          903 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.172, whole genome shotgun sequence.
ACCESSION   DAPIWU010000170 DAPIWU010000000
VERSION     DAPIWU010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.172"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..627
                     /locus_tag="RJ285_001754"
     CDS             <1..627
                     /locus_tag="RJ285_001754"
                     /inference="COORDINATES: protein motif:HMM:NF019552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HDV7384484.1"
                     /translation="HDDDLNFTLFYDNEEWFIDGGLYQYSEKDEFRKYLRSHLSHNLT
                     YPKNFKAHRNLQKSLKTHINNLSSENIYKFEGYSYMFDGFENYRSIEYDKNKLIFTII
                     DRCKILNKNIAIENNITYVTNFVIPKNKEIVIDKLNKCVKIIGKNKILHLIYQDNIDI
                     HMEENYISRKINTKEKVNILKFIHNGIHLDTVFNLAYSNDFVNYNLGC"
BASE COUNT          372 a           73 c          113 g          345 t
ORIGIN      
        1 catgatgatg atttaaattt cactttattt tatgataatg aagaatggtt tattgatggt
       61 ggtttatatc aatattctga aaaagatgaa tttagaaaat atttgagatc tcatctttct
      121 cataatttaa catatcctaa aaactttaag gctcatagga atttgcaaaa atccttaaaa
      181 acacatataa ataacttatc tagtgaaaat atttataaat ttgaaggata ttcttatatg
      241 tttgatggtt ttgaaaatta tagaagtata gaatatgata aaaataagtt gatttttact
      301 attattgata gatgtaaaat attaaacaaa aatatagcga ttgaaaataa tattacttat
      361 gtaactaatt ttgttattcc aaaaaataaa gaaattgtaa tcgataaatt gaataaatgt
      421 gtaaaaatta ttggaaaaaa taaaatattg catttaatat atcaagataa tattgatata
      481 catatggaag aaaattatat atctagaaaa atcaatacaa aagaaaaagt aaatatttta
      541 aaatttattc ataatggtat acatttggat actgttttta atttagctta ttctaatgat
      601 tttgtgaatt ataatttagg ttgttaatca tgtttattaa ttatagaaat gaacgaattg
      661 agtttaattt gccatttgat tgggctaaaa atccatataa aattagctca tatccacatc
      721 atttaatgtc tttaagatgg ataaatgagg agaatttttc caaagagcaa ataaaaatca
      781 ttatactaga tttttatgat tttcattttg ttaaaaaggt acttcatcct tattatgtta
      841 aaatacaagc tgatcattgc acatgtataa gattatttaa attgtatcaa attaaagatt
      901 tgt
//
LOCUS       DAPIWU010000171          829 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.173, whole genome shotgun sequence.
ACCESSION   DAPIWU010000171 DAPIWU010000000
VERSION     DAPIWU010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.173"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(1..829)
                     /locus_tag="RJ285_001755"
                     /pseudo
     CDS             complement(1..829)
                     /locus_tag="RJ285_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="invasion protein"
BASE COUNT          295 a          107 c          135 g          292 t
ORIGIN      
        1 ttaaaattta tagcaagtaa attcatggta tcgaaggtct ttgattggcg gatttcttcc
       61 atatcaagat agcatacatt gtctttgtta aaatatttta ataaataaga gatgataaaa
      121 actccttgtt gtagttcgtt tatatcgatt ttaattttat gattttgatg agtaagatag
      181 tcaatataat aacgccaatc ataagttaga ttaaattcag ggggatagtt tcttaaaact
      241 ttactccaat ctcttcccca gctatgcttt aaaagtccca ttggatctcg aactccgcaa
      301 ataatcttag aattaaaatc taataaagat agatatttat caaaataagg tagattaatt
      361 tctgatatat taatagcata ttgagcaatt gtattatcat ttagacacat gtaattaata
      421 caatatctct ctttgctatc aggtggtaaa acccaggagg caaaacaagt tacatcgcaa
      481 cattgattaa ggtatctaaa aatgctgctg ctccaacgcc atgtggagaa atatagataa
      541 atttatagtg tttaggcagg ggtaaattta aatcccaagc taattctgcg caatgtcgac
      601 tagaatctat ttctataaaa ttaggattga ttaaaggtgg ataaggatgt tttgttgata
      661 aatatctatc cctaaattcg ttagaattga gccaagtgca aattgtttca atattttcca
      721 aaacaaaggt aaaaaaattt ttcattattc gaatttttta aagcttgtaa aagaatttga
      781 gctagggttg gagttaggtt attttttata tagagtaaaa gattttgca
//
LOCUS       DAPIWU010000172          778 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.174, whole genome shotgun sequence.
ACCESSION   DAPIWU010000172 DAPIWU010000000
VERSION     DAPIWU010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.174"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..213)
                     /locus_tag="RJ285_001756"
     CDS             complement(<1..213)
                     /locus_tag="RJ285_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7384485.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDA"
     gene            complement(374..>778)
                     /locus_tag="RJ285_001757"
     CDS             complement(374..>778)
                     /locus_tag="RJ285_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7384486.1"
                     /translation="SSTYVVSAGSGFSAGSGNSQFAALRISTVSAHDETAGVTTLKGA
                     MAVMDIAETAITNLDQIRADIGSVQNQITSTINNITVTQVNVKSAESQIRDVDFASES
                     ANYSKANILAQSGSYAMAQANSSQQNVLRLLQ"
BASE COUNT          240 a          146 c          132 g          260 t
ORIGIN      
        1 agcatcatta ccattgttta tagcttgacc taaagttgct gcttgtgaac gcaaagaatc
       61 tgctatcgcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactgag
      121 tctacttaaa gacttgtcaa gctctctagc attaacaact gaatttgcat gtgcgttcaa
      181 tgcaccgatg ttggtgttta ttctaaaacc cattttaaat cctttcaaaa tattgcatcg
      241 aaaagattaa agcaagaagt gttccaagtt ttgattcaaa ttgaaatttt atttagaaat
      301 aaaaaaagcc tagtattact actaggcttg gatttgtata aattacagta aacgctaaag
      361 aatgttttat atactactgt agtaatctta aaacattttg ctggcttgaa tttgcttgag
      421 ccatagcata agaaccactt tgagccaata tatttgcttt agagtaattt gcactctcgc
      481 ttgcaaaatc tacatctctg atttgtgatt ctgctgattt aacatttacc tgggttacag
      541 taatgttgtt tatagtcgat gtgatttgat tttgcacaga acctatatct gctctgattt
      601 gatcaagatt ggtaatagca gtttctgcta tatccatcac agccattgca cccttaagtg
      661 tagttacacc tgcagtttca tcatgagcac ttactgtact tattcttaaa gctgcaaatt
      721 gagaattacc tgaaccagca gagaaacctg aaccagcaga aacaacatag gtgctact
//
LOCUS       DAPIWU010000173          746 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.175, whole genome shotgun sequence.
ACCESSION   DAPIWU010000173 DAPIWU010000000
VERSION     DAPIWU010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 746)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.175"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..351
                     /locus_tag="RJ285_001758"
     CDS             <1..351
                     /locus_tag="RJ285_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDV7384487.1"
                     /translation="ERVLEIFANEIFSIGDFILTGGELPALVMCDAILRNVNGVLGNM
                     ESLKEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCKTK
                     FFRPDLFLEHERKK"
     gene            362..718
                     /gene="rplS"
                     /locus_tag="RJ285_001759"
     CDS             362..718
                     /gene="rplS"
                     /locus_tag="RJ285_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDV7384488.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT          263 a           83 c          152 g          248 t
ORIGIN      
        1 gaaagagtgc ttgaaatttt tgcgaatgaa atttttagta taggggattt tattttaaca
       61 ggaggagaat tacctgcgct tgtaatgtgt gatgcgattt taagaaatgt taacggggtt
      121 ttaggaaata tggaaagctt gaaagaagaa agctttgaaa ataatttact cgaagcgcct
      181 gctttttcaa aaccttttat ttttgagaaa aaaaataaaa aattttatac tccttcagag
      241 tttttaaagg gtaatcacgc tagaattgca agtttaaaaa ctactttggc gtcttgcaaa
      301 acgaaatttt ttcgtccaga tttattttta gagcatgaac gcaaaaaata agggattttt
      361 tatgaaaaat aaatatatag aacaatttga agcaaaacaa attgaaggta aaaatgttcc
      421 agattttcgt gctggtgata ctttaaagct tgcaattcgc attaaagaag gggataaaac
      481 aagaatccaa aattttgagg gtatttgtat tgctagaaga ggtaatggcg taagtgaaac
      541 ttttatcgtg cgtaaaattg gcgctaataa tgttggcgtt gagagaattt tccctattta
      601 tagtgaaagt ttagaaagta ttactgtttt gcgtcgtggt cgtgtacgcc gtgcaagatt
      661 attctactta agagatagac gtggtaaagc agcgcgtatt aaagagctta aaaaataatt
      721 tataattatt ttctattata agtcta
//
LOCUS       DAPIWU010000174          721 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.176, whole genome shotgun sequence.
ACCESSION   DAPIWU010000174 DAPIWU010000000
VERSION     DAPIWU010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.176"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..>721
                     /locus_tag="RJ285_001760"
     CDS             <1..>721
                     /locus_tag="RJ285_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HDV7384489.1"
                     /translation="YKEFHNGVNFSNCIFKNEVDFSYFVSGTPLPDNKYYNNAQNTLF
                     KDCIFENKVDFHNSKITNNIYFNNSHFKDYVDFHECEFEKTASFYGVRFEKAPNFSAC
                     YFKEPKAVNLINVDIDKLDFRSAEDYIQDNYQDGNYKNAIKNNEKIQKDEKELYRIEN
                     EHKLRYAKNLKDSFRVIKDVLINQNNTLEAQEWHKLELYAKEKENHIDLSVKDIEKNP
                     DISKNILIWFNCVLLNVYRNT"
BASE COUNT          301 a           68 c          109 g          243 t
ORIGIN      
        1 aatataaaga atttcacaat ggggttaatt tttcaaattg tatctttaaa aatgaagttg
       61 atttcagtta ttttgtatca ggtactccat tgcctgataa taaatactat aataatgcac
      121 aaaatacatt atttaaagat tgtatttttg agaataaggt tgatttccat aattctaaaa
      181 ttaccaataa tatttatttt aataattctc actttaaaga ttatgttgat tttcacgagt
      241 gtgaatttga aaaaactgct agtttttatg gagtgagatt tgaaaaagct ccaaatttca
      301 gtgcttgtta ttttaaagaa ccaaaagctg taaatttaat caatgtcgat atagataagc
      361 tagattttag atcagctgaa gactatatac aagataatta tcaagatgga aattataaaa
      421 acgcaattaa aaataatgaa aaaatacaaa aagatgaaaa agagctttat aggattgaaa
      481 atgagcataa attaagatat gctaaaaatt taaaagattc ttttagggtt ataaaagatg
      541 ttttgataaa tcaaaataat actttagaag ctcaagagtg gcacaagcta gagctttacg
      601 caaaagagaa agaaaatcat atagatttaa gcgtcaagga catagaaaaa aatcctgata
      661 tatctaaaaa tatattaata tggtttaatt gtgttttgtt gaatgtgtat agaaatacta
      721 g
//
LOCUS       DAPIWU010000175          719 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.177, whole genome shotgun sequence.
ACCESSION   DAPIWU010000175 DAPIWU010000000
VERSION     DAPIWU010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.177"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..284
                     /locus_tag="RJ285_001761"
     CDS             <1..284
                     /locus_tag="RJ285_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384490.1"
                     /translation="ELDINSQKEKIKILFIINEVPKFLKSIYKECEFKEYGLANYLEF
                     DEIWDFYENNIRYFTILTPMGANKIKLRLENTQNSEKELNIIEVNLDKK"
     gene            532..>719
                     /locus_tag="RJ285_001762"
     CDS             532..>719
                     /locus_tag="RJ285_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HDV7384491.1"
                     /translation="MIISFLDDDIDKPYVSGSLYNGANPSLVNLPFNDRQTSLSSKTI
                     GVNEEGYNELTLSNIKDK"
BASE COUNT          301 a           93 c           87 g          238 t
ORIGIN      
        1 aagaattgga tattaattct caaaaagaaa aaatcaaaat actttttatt attaatgaag
       61 tgccaaaatt tttaaaatca atctataaag aatgtgagtt taaagaatat ggattagcaa
      121 attatttgga atttgatgaa atttgggatt tttatgaaaa taatattaga tattttacta
      181 ttttaactcc catgggtgca aataaaataa aattgcgttt agaaaataca caaaacagcg
      241 aaaaagaact caatatcata gaagtaaatt tagataaaaa atagatttta ataacaaaaa
      301 taagcaattt ctttttctac tcaaatttag actatttgtg ttaaaataat aaatataaaa
      361 attaaaaaca tagtggattt ataccaaatt ataaacacca taaactcaac ccccaaaagg
      421 atcatcaatg tcccttaatt cttacatgag tcttaatata tcaaattcta cttcaaatcc
      481 cctacccttt aaaatcacta aagcccttat caaagaaagt taggagatga agtgattatt
      541 tcttttttag atgatgatat agataaacct tatgtaagtg gaagtttgta taatggggct
      601 aatccaagtt tagtaaatct tccttttaat gatcgccaaa cttctctttc ttctaaaacc
      661 ataggtgtta atgaagaagg ttataatgaa cttaccctct caaatataaa agataaaga
//
LOCUS       DAPIWU010000176          683 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.178, whole genome shotgun sequence.
ACCESSION   DAPIWU010000176 DAPIWU010000000
VERSION     DAPIWU010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.178"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            37..447
                     /gene="perR"
                     /locus_tag="RJ285_001763"
     CDS             37..447
                     /gene="perR"
                     /locus_tag="RJ285_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HDV7384492.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
     gene            493..>683
                     /locus_tag="RJ285_001764"
     CDS             493..>683
                     /locus_tag="RJ285_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384493.1"
                     /translation="MVYEIQKNFLLSDCTLLENLKKDNIPFRNSKFETFYTQITSNHS
                     VKFQSFCNEFYKITKFNNS"
BASE COUNT          276 a           77 c           91 g          239 t
ORIGIN      
        1 tattattttt acttaaaaaa gtaaggaata aataaaatgg aattactaca aatgcttaaa
       61 aaacatgagt taaaagctac tccgcaaaga ctatgtgttt taaaaatttt aaaaagacat
      121 gagcatccta atattgatga attatataca gaaattaaaa aagaataccc ttcaatctct
      181 ttagcgacgg tttataaaaa tcttaatact ttacaagaac aaggtttagt tgttgaaatc
      241 aatgttttaa atcaaaaaac ttgttacgat atctatgaag aagaacatat tcatgttgtt
      301 tgcgccaaat gtggtggtat agaggattta agttttaaag atgctaagct ttatgaatat
      361 caagagcatt tagaaaaaaa gataggcaat ctcgtcaatc atctgtctgt ttgtgcttat
      421 gttgatagtt gcaaaaagtg tcattaagca aaataaggtt aaaataaccc atatatttta
      481 agggttattt taatggttta tgaaattcaa aaaaactttt tactatctga ttgcactctt
      541 ttagagaatt taaaaaaaga taatatacct tttcgaaatt ctaaatttga aactttttat
      601 actcaaataa cttcaaatca tagtgttaaa tttcaaagtt tttgcaatga attttataaa
      661 attacaaaat ttaataattc aat
//
LOCUS       DAPIWU010000177          641 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.179, whole genome shotgun sequence.
ACCESSION   DAPIWU010000177 DAPIWU010000000
VERSION     DAPIWU010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.179"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            127..465
                     /locus_tag="RJ285_001765"
                     /pseudo
     CDS             127..465
                     /locus_tag="RJ285_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935934.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          252 a           87 c           99 g          203 t
ORIGIN      
        1 ataaaatata ttttagacca atatggaaaa actatgcacc aaatatttat ggtaatgagg
       61 gtaatatgga ttttagatta aagcttgacg gtgaaataga ttgcagaagc ttattaggag
      121 aattatatgg ataataaaca acaaatcaat aaactaaggg acatggcaga acttgcacag
      181 gcaagttatg gatattttca ttatgttgat aataaatttg atataaaaga tgaagataaa
      241 attgttacct ttgaaaatgt tttagatatt acctataaaa actctaaaat tattgatgaa
      301 agaggattta aaatcggcaa gctcgatggc gacttctccc cactccaagc taaacaattc
      361 ttttctcgct atgatttatt aatccatcaa ccaaatacag agtcaagctt ttctgctact
      421 ttgttttacg ataaacaaaa agatgaattt ataataggat ttaggggaac tgaagtttct
      481 tttaaagatt taaaagcgac atgggaaacc gctttagata caacccaaga cttagtctta
      541 tctctcaatg gcaatcttca atcttctttt cttttagaat ttttagaaca agtaaataaa
      601 ataatcaaaa ataaacacaa aagaattata tttgtaggac a
//
LOCUS       DAPIWU010000178          531 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.182, whole genome shotgun sequence.
ACCESSION   DAPIWU010000178 DAPIWU010000000
VERSION     DAPIWU010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.182"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            32..>531
                     /locus_tag="RJ285_001766"
     CDS             32..>531
                     /locus_tag="RJ285_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDV7384494.1"
                     /translation="MKKIILFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDINVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FPKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTL
                     IQKYPQ"
BASE COUNT          215 a           81 c           62 g          173 t
ORIGIN      
        1 atttaaaaaa tttatatcga aaggaaatat tttgaaaaaa attatattat ttatcttatc
       61 tttagggata ttttatactt tcacacaagc taaaaattta gagcaagaac aaaatactag
      121 tagcaattta gttagtgtca gtatagcacc tcaagcattt tttgttaaaa aaatagctgc
      181 aaatactcta gatatcaatg ttattttgcc cccaaatagc aatgagcata attttgaatt
      241 taaaccaagt actatgaaaa aacttgaaaa aagtgatatt tatttcacta taggcttaga
      301 atttgaaaaa gtttttacgg ataaatttaa acaaaatttt ccaaaacttc aagttgtaaa
      361 tatgcaaaaa aacatagctt tgattcaaac tcatgataca cacgaacact ctcatgagca
      421 tgaacaccac gaacatgagc attttgatcc tcatacttgg ctagatccta ttttagtcca
      481 aactatggct ttaaatattt atgacacctt aattcaaaaa tatccacaaa a
//
LOCUS       DAPIWU010000179          531 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.183, whole genome shotgun sequence.
ACCESSION   DAPIWU010000179 DAPIWU010000000
VERSION     DAPIWU010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.183"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            101..>531
                     /locus_tag="RJ285_001767"
     CDS             101..>531
                     /locus_tag="RJ285_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7384495.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLKISFQDKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKTHTISNLKTLNLDFESFYKNNN
                     AKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKS"
BASE COUNT          215 a           67 c           75 g          174 t
ORIGIN      
        1 ttaagaagaa gaggttttaa ttaatcattc aagccctttc tttgggcttg aattttaaaa
       61 atttatgcta tgattttgta tattttataa aggaaaatat atgaatttat gggataaaaa
      121 ggccaaaact tacgcaagat atcaaaacac tttaaacacc atacaaaagc aaacttttga
      181 atatttacaa aatttaaaga tttcctttca agataaaagt attatagata taggatgtgg
      241 aactggggtt tggactttac acttagctaa agaagctaaa gaaattttag ccctagatag
      301 tgcaaatact atgcttgaaa ttttacaaga agatgcaaaa actcatacca tatcaaattt
      361 aaaaaccctg aatttagact ttgaaagctt ttataaaaat aataacgcaa aatttgactt
      421 agccttttta agtatgtctc ctgctttaca aaatgaaaaa gattatacaa atttcttaaa
      481 tctagccaaa ataaaaattt atcttggttg ggctgattat agaaaaagtg a
//
LOCUS       DAPIWU010000180          470 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.185, whole genome shotgun sequence.
ACCESSION   DAPIWU010000180 DAPIWU010000000
VERSION     DAPIWU010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.185"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(27..>470)
                     /locus_tag="RJ285_001768"
     CDS             complement(27..>470)
                     /locus_tag="RJ285_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7384496.1"
                     /translation="IINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELRSLGAK
                     TVVLNSGVPTTLSALKQNISYEKYEATKVNGKKLYHKDFLNYAIKLFHMEEKKAIKEV
                     GAMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
BASE COUNT          157 a           88 c           49 g          176 t
ORIGIN      
        1 tttcattttt tcgaatttca aaaaaactaa aattttatat ttttcatact cgctaaacaa
       61 accccctccc ttaaaccctc atcaatgact agaagtttat gtttatcaaa caaagcataa
      121 aacagcaaac aacctgcact caaataattt tttctcatcg cgcctacttc ttttatagcc
      181 tttttttctt ccatatgaaa aagtttaata gcataattta aaaaatcctt atggtaaagt
      241 tttttaccat ttactttagt tgcttcatac ttttcatagc ttatattttg ttttaatgcg
      301 ctaagtgtgg taggaactcc ggaatttaaa accaccgttt tagcccctaa agaacgaagt
      361 tcctttttaa tcatagccac ctcatcaaaa gccctaaaag ctagatgctt taaataggga
      421 tttgcaatta aaaaatgaat tttaagtttt ttatctttaa tatttatgat
//
LOCUS       DAPIWU010000181          416 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.187, whole genome shotgun sequence.
ACCESSION   DAPIWU010000181 DAPIWU010000000
VERSION     DAPIWU010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.187"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>416)
                     /locus_tag="RJ285_001769"
     CDS             complement(<1..>416)
                     /locus_tag="RJ285_001769"
                     /inference="COORDINATES: protein motif:HMM:NF028199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384497.1"
                     /translation="NKLLMDEFYSKNTNHGLDQSLSLYKASFFLEVDNILDIRNVAIE
                     RINSELKFAFCDDGGHKENSPAYLYYGVSQVLRALDIGYKYEKENTKIYFPLDLLKKS
                     CLVLGYFVQFNEKMPLIGDTVEFKINNFLLNKISIH"
BASE COUNT          159 a           61 c           39 g          157 t
ORIGIN      
        1 ttatgtattg agattttatt tagtaaaaaa ttatttattt taaattcaac agtatcacca
       61 ataagaggca ttttttcgtt aaattgaaca aaatatccta aaaccaaaca agattttttc
      121 aacaaatcta atggaaaata tattttagta ttttcttttt cgtatttata accaatatct
      181 aaagctctta aaacttgaga aacgccataa tataaatagg ctggactatt ttccttatga
      241 ccaccatcgt cgcaaaaagc aaatttgagc tcactgttaa ttctttctat tgcaacattt
      301 cttatatcca atatattatc aacttctaaa aaaaaagatg ctttatataa agataaactt
      361 tgatctaatc catgatttgt atttttagaa taaaactcat ccattaaaag tttatt
//
LOCUS       DAPIWU010000182          414 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.188, whole genome shotgun sequence.
ACCESSION   DAPIWU010000182 DAPIWU010000000
VERSION     DAPIWU010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.188"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            39..242
                     /locus_tag="RJ285_001770"
     CDS             39..242
                     /locus_tag="RJ285_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384498.1"
                     /translation="MLLNTPCRGIVDTNFESKRISITSTLKFQEKKEKVEAKAEKEEA
                     NKDNSNSTNTNTNKKDKLLDISA"
BASE COUNT          197 a           58 c           53 g          106 t
ORIGIN      
        1 aaaattataa ttttaaatga gaaatcagga gcttgctaat gttacttaac acgccttgca
       61 ggggaatagt agatacaaat tttgaaagca aaagaattag cataacttca actttaaaat
      121 ttcaagaaaa aaaagaaaaa gtagaagcta aggctgagaa agaagaagca aataaagaca
      181 atagcaattc tacaaacaca aataccaata aaaaagataa acttttggat atatctgctt
      241 agtctaaaat atactataac tatatctcct taaagaatac gcaataaatg attttttgat
      301 tttattaagc ttttaaaaca tcgaaaaaag gaaaaattaa aaaacacaaa aacaatatcc
      361 caaagtccat agcttagaag aagaccttgc gatacttaaa aacaacccat atta
//
LOCUS       DAPIWU010000183          414 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.189, whole genome shotgun sequence.
ACCESSION   DAPIWU010000183 DAPIWU010000000
VERSION     DAPIWU010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.189"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..>414
                     /locus_tag="RJ285_001771"
     CDS             <1..>414
                     /locus_tag="RJ285_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HDV7384499.1"
                     /translation="LKDNINYENKKDIAIFRGAVYQNHRKEFFDSYFGRTFCDIGDTS
                     KQPSQWKKNFLNKKEQMKYKFIISLEGNDVASNLKWAMNSNSLVLAPKITCETWFMEG
                     TLKPNYHFALIDNENLSAVIEYFKSRPKDALEIIN"
BASE COUNT          172 a           47 c           63 g          132 t
ORIGIN      
        1 ttttaaaaga taacataaac tatgaaaata aaaaggatat agcaatattt agaggagcag
       61 tatatcaaaa tcatcgaaaa gaattttttg attcttattt tggtagaact ttttgcgata
      121 taggagatac ttcaaaacaa cctagccaat ggaaaaaaaa ctttttaaac aaaaaagaac
      181 aaatgaaata taaatttata atttctttag agggtaacga tgtagcaagc aacttaaaat
      241 gggctatgaa ttctaattct ttagttttag ctccaaaaat aacttgcgaa acttggttta
      301 tggaaggaac tttaaaacca aattatcact ttgctttgat tgataatgag aatttgtcag
      361 cagtaattga atattttaaa agtcgcccaa aagatgcatt ggaaattatt aata
//
LOCUS       DAPIWU010000184          408 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.191, whole genome shotgun sequence.
ACCESSION   DAPIWU010000184 DAPIWU010000000
VERSION     DAPIWU010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.191"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>408)
                     /locus_tag="RJ285_001772"
     CDS             complement(<1..>408)
                     /locus_tag="RJ285_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384500.1"
                     /translation="ANEIIPFEEYFSDDRGAGVAAFSDFFRFNLLYLRGGVWVDLDMV
                     CLNHYDYDKKEYIFSKEIDNDLSKARITTSLLKFPKQSEFGKLIIDEAKKIVDDNKII
                     PWGIIGPWFLAKWVKEYDLEKHALDYKDTCQIS"
BASE COUNT          141 a           79 c           44 g          144 t
ORIGIN      
        1 aagaaatttg acaagtatct ttatagtcta gagcatgttt ttctaaatca tattctttaa
       61 cccatttagc taaaaaccaa ggacctataa taccccaagg aattattttg ttatcatcaa
      121 caatcttttt tgcttcatct ataattaatt ttccaaattc actttgtttt ggaaatttaa
      181 ggagtgaagt tgtgattcta gctttgctta gatcattatc aatttcctta gaaaaaatat
      241 attctttttt atcataatca taatggttta aacacaccat atcaagatcc acccataccc
      301 cccccctgag ataaagtaga ttaaacctaa aaaaatctga aaaagcagct actccagctc
      361 ccctatcatc gctaaaatat tcttcaaaag gtatgatttc atttgcat
//
LOCUS       DAPIWU010000185          407 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.192, whole genome shotgun sequence.
ACCESSION   DAPIWU010000185 DAPIWU010000000
VERSION     DAPIWU010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.192"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            27..>407
                     /locus_tag="RJ285_001773"
     CDS             27..>407
                     /locus_tag="RJ285_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HDV7384501.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTDKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHK"
BASE COUNT          167 a           56 c           57 g          127 t
ORIGIN      
        1 taatattata aaaataagga tacaatatga aaaaaattct tctcttaggt gctctttttg
       61 ctgtaaatct ttgggctgtt aatgatatag aggtaaaaaa tgcctttgta aaacaaactc
      121 cacctcatgc gcaaaatagt gctatttttc ttactatttt taataatact gataaggata
      181 ttgctctaat aagtgccaaa agcgatatca gtgaagtcag tgaactgcat acacatatac
      241 ataaagatgg aaaaatgatg atgcaaaaaa ttcctgaaat tattataaaa gctcattcaa
      301 gcacagagct taaatctgga ggttaccata taatgctttt aaaactaaaa aaacctatta
      361 ttaaagacac gaaggtaaat ttagatttaa aatttaataa tcacaaa
//
LOCUS       DAPIWU010000186          363 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.denovo.194, whole genome shotgun sequence.
ACCESSION   DAPIWU010000186 DAPIWU010000000
VERSION     DAPIWU010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.denovo.194"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(5..80)
                     /locus_tag="RJ285_001774"
     tRNA            complement(5..80)
                     /locus_tag="RJ285_001774"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(45..47),aa:Arg,seq:tct)
     gene            complement(100..175)
                     /locus_tag="RJ285_001775"
     tRNA            complement(100..175)
                     /locus_tag="RJ285_001775"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(140..142),aa:Lys,seq:ttt)
     gene            complement(180..256)
                     /locus_tag="RJ285_001776"
     tRNA            complement(180..256)
                     /locus_tag="RJ285_001776"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(220..222),aa:Asp,seq:gtc)
BASE COUNT          103 a           90 c           89 g           81 t
ORIGIN      
        1 tgattggcga cccctagagg atttgaacct ctgtttccac acagagagag tgttgtcctg
       61 ggccactaga cgaaagggtc ataaccctaa caataaaaat ggtgtcccgt gttggattcg
      121 aaccaacggc cccctcctta aaagggagat gctctaccgg ctgagctaac gagacaatat
      181 ggcgcagcgg acggggctcg aacccgcgac ctccgccgtg acagggcggc attctaacca
      241 gctgaactac cgctgcatcc aaagtaaaga agtagagatt ataaaaccta tttatgattt
      301 tataaaatgg tggtcactat aagactcgaa cttatgacat ccaccttgta agggtggcgc
      361 tct
//
LOCUS       DAPIWU010000187         6059 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.guided.099, whole genome shotgun sequence.
ACCESSION   DAPIWU010000187 DAPIWU010000000
VERSION     DAPIWU010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6059
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.guided.099"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..238)
                     /locus_tag="RJ285_001777"
     CDS             complement(<1..238)
                     /locus_tag="RJ285_001777"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HDV7384502.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAE"
     gene            complement(235..1083)
                     /locus_tag="RJ285_001778"
     CDS             complement(235..1083)
                     /locus_tag="RJ285_001778"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HDV7384503.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(1094..1918)
                     /gene="panB"
                     /locus_tag="RJ285_001779"
     CDS             complement(1094..1918)
                     /gene="panB"
                     /locus_tag="RJ285_001779"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HDV7384504.1"
                     /translation="MRKSILSFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            2135..2896
                     /locus_tag="RJ285_001780"
     CDS             2135..2896
                     /locus_tag="RJ285_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-461"
                     /protein_id="HDV7384505.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFLRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKS"
     gene            complement(2994..3878)
                     /locus_tag="RJ285_001781"
     CDS             complement(2994..3878)
                     /locus_tag="RJ285_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HDV7384506.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(3875..4549)
                     /gene="modB"
                     /locus_tag="RJ285_001782"
     CDS             complement(3875..4549)
                     /gene="modB"
                     /locus_tag="RJ285_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDV7384507.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(4542..4943)
                     /locus_tag="RJ285_001783"
     CDS             complement(4542..4943)
                     /locus_tag="RJ285_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HDV7384508.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(4940..5689)
                     /gene="modA"
                     /locus_tag="RJ285_001784"
     CDS             complement(4940..5689)
                     /gene="modA"
                     /locus_tag="RJ285_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7384509.1"
                     /translation="MKKFIVFFGILFFTLHLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(5740..>6059)
                     /locus_tag="RJ285_001785"
     CDS             complement(5740..>6059)
                     /locus_tag="RJ285_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="malonyl-[acyl-carrier protein]
                     O-methyltransferase BioC"
                     /protein_id="HDV7384510.1"
                     /translation="LLLSTFAKQNLKEIKQSTGFGLNYFSLNELEQIFKVYFNEVKIT
                     QELVELSFDNALEVFRHLKLSGVNSLGFYPLNKCFLKDFEEKFQNKLTYHPVFILCKN
                     DIK"
BASE COUNT         2134 a          983 c          816 g         2126 t
ORIGIN      
        1 cttctgcaag acgagccgca gcaccattta agcatacaac tccttcttct tgcgtggcta
       61 tggtataggt ttcaaatcta gcgccattat tgacattgac tacttggact ttttcgtatt
      121 ctaaaattcc actcgcttgc aataattttt catctatact tatacttcct atataatcaa
      181 gcctagcttc tgttacgctt gcgcgatgta tttttgattt gagtaaagtg atattcattt
      241 taatccttgt actaaaaaat tatcaatgag tcttgttttt ccaacaaaag cagccaccgc
      301 tcctaaaaca ttatcagtga tattttcgat attttccatg gtgttaaaat cgactaattc
      361 tatataatcg attttgatta gtttttcttt ttctaaaata tctttcatag cttggatgat
      421 cttagaagta tttttttctc cctctcggac taatttttca gccaaaaaaa tgctttgaga
      481 tatagctagt gacgcttttc tttcttcttt gctaagatat acatttctag agcttttagc
      541 taagccatct tcttctctaa tgataggaca aatttgaatt tttaaatcaa aatttaaatc
      601 atcaaccata tgcctaacga ctacgcattg ctgcgcgtct ttttgcccca tatagactat
      661 atcagggttt aggatattaa aaaatttagt taaaaccgtg caaacgcctc taaaatgccc
      721 cggtctttta gccccgcaaa gtttatcagt gatcgtattc atatctacat aggtgctaaa
      781 attcttaaga tacatttgag ttgcatcggg gataaaaacc atatcaacgc cattatcttg
      841 acacatttta atgtcgcgtt ctaaatctct tggataacta gaaaaatctt cattaggccc
      901 aaattgcata ggatttacaa agatacttac tataacctta tcttgtgttt tggcatgttt
      961 gactaaactt aaatgtccat cgtgtaaaaa acccatggtt ggaacatagc ctatactaag
     1021 ttgatgtgat ttccaatctt ttacaatttg ttttgcttct ttgacagaag taatgacttg
     1081 catatttgta tccttagtat aatttatcta ataattcatc atctaaataa tcaaagctgt
     1141 gctcttggga aggaaaaata ccgcttttaa cttcatctct atatttttca actcctactt
     1201 gaggatcaat tttatcaaaa tgctttacaa attttgcttt aaaatcttta tttaaaccca
     1261 aaagatcgtg ataaactaaa acttgtccat cgcagtattt gcctgaacct atgccgattg
     1321 ttggaatttc taaaatagag cttatttttt gtgctagttt tacaggcaca cattctaaaa
     1381 ccaacataca agcacccgca tcttgcacag cttttgcatc atctataatt ttttgggccg
     1441 attgtaaatc tttaccttga accctatagc cacctagcat atttacagct tgtggggtta
     1501 gtcctaggtg agcaacgacg ggtattcctg attgggaaat caatttaatc ttacttgcga
     1561 tttctatacc cccttccact tttaccccat ttgcgtggct ttctttgata aatcttgagg
     1621 catttaagat agcgtcacga tctgaacttt gataagacat aaaaggcata tcagcaagta
     1681 cgaaagactt tttagctccg cgagaaacag ctttggtaaa aatcaacatt tcatccatag
     1741 taacacttaa agtatcttgc atgccaagca ctgtcatagc taatgaatct ccaaccaata
     1801 taatatctat atcgctattg tctaaaattc ttgcactatg ataatcatac gcacttacca
     1861 tggttatttt ttcatttttg gccttttttt ccaaaaaact aagaatactt tttctcattt
     1921 aaaatacctc gtttagctat aaaatagtaa gcaaaaaact agcatataaa ttttcataaa
     1981 tagtaaataa acgataaaac aaaatatatt taattaatgg attgttttaa tggttacaat
     2041 tttagaaaat ttcagttcat gttaaaggat atttaaagaa aataaagctt taaaaagtat
     2101 tttgtttaaa attatttaaa tagaaagata ttttatgaaa aaaataactt tatttttact
     2161 tttcttaaat ttagtgtttg ggcaagataa gatattaaat aattggttta aagagtataa
     2221 tacaagcggc acttttgttt tttatgatgg aaaaacttgg gcgagtaacg actttttaag
     2281 ggctatggag actttctctc ccgcttccac ttttaaaatt tttaatgctc taattgcact
     2341 tgatagtggt gtgataaaaa ctaaaaaaga aattttttat cactatagag gtgaaaaagt
     2401 atttttatct tcttgggcgc aagatatgaa tttaagttca gctataaaat attctaatgt
     2461 tcttgctttt aaagaagtgg caagaagaat tggtatcaaa actatgcaag aatatttaaa
     2521 caagcttcat tatggtaatg ctaaaatttc caagatcgat actttttggc ttgacaactc
     2581 actaaaaata agcgctaaag aacaagcaat tttgcttttt agactttcac aaaatagctt
     2641 acctttttct caagaagcaa tgaatagtgt taaggaaatg atttatttaa aaaatatgga
     2701 aaatttagag ctttttggaa aaacaggttt taatgatgag caaaaaattg cttggattgt
     2761 aggttttgtg tatttaaaag atgaaaataa atataaggct ttcgcgctaa atttagatat
     2821 tgataaattt gaagatttat ataaaagaga aaaaatttta gaaaaatatt tagatgaact
     2881 tgtaaaaaaa agttaaaaat gatggctagt gagtatttcg taaaatgcaa aaatacttaa
     2941 ttgtatgatt tgcgtacact taaagtactc attaaaaaat taaatttttg ctcttattta
     3001 tcaagttttc ctacgatgat agggttaaag gcttttatgg atagcaaaag cgtatcgccg
     3061 atttttacat cttgataagc ttttagaaat tcctcttcac taagagtgat tttaataata
     3121 tcttgattta aaagcaaggt taaaaccact aaaatatcac tttttttaat ttctagcaaa
     3181 gttgcactta agcgtaattt tgcgctgata tttgaatgag taaaaaattc atttttagga
     3241 aaatctttaa taatttttcc gtttttaagc tctaaaattc tatgacttaa cttataaatt
     3301 tcagctagat catgacttac caataaagta cttattttaa aatactctaa aatcttggtt
     3361 aattcatctt gtaaattggc acgcatttta aaatccaaag cactcaaagg ttcatctaaa
     3421 agcaagattt ttggttctct tgctaaagct cttgctaaag ctactctttg tgcctgcccc
     3481 ccacttaaat gtttaggata aattttagct aaattttcaa gcttcattaa ggctaaaagc
     3541 tcgctaacct ttgctttaga actagcggca taggcgatgt tttcttttat attcatattt
     3601 ggaaaaagcg cataatcttg aaaaacaaaa ccaatttttc ttttttgtaa agctaaacta
     3661 aaattttttg aagaatcaaa ccaaagttca ttatctactt ctatacgccc caatttaggc
     3721 tttataagtc ccgctatgat ttttaaaaga gtggtttttc ctgctccact ttcgccaaaa
     3781 agtgcagtaa tttttcctga ttctatatct tttttaaaat ttaaatccag tcttccttta
     3841 gcggtattca taggatgatt gatatcaatt cttatcattg aaaactcatt tttttattga
     3901 taaaataaag actaaaaagt actaaaaaag aaaaaataaa caatataaaa gcatattgat
     3961 gggctaagct atagtttaag atttcaagtt catcataaat agctatacta gccactaaag
     4021 tttcaccttg tttatgtcct cctatcatca tcacgactcc aaattcaccc acagtatggg
     4081 caaaactcat cgcacaagca ctaaaaattc ctgctttaga attaggtaaa atcactctaa
     4141 aaagagtata aattttactt ttacctaaac tataagaagc atcgagcaaa tttggattga
     4201 tcgatgaaaa ggcactttgc aaaggattta ccataaaagg caaagaaaaa atcaaagaag
     4261 caaaaacaag accttcaaaa ctaaaaacca aagaaagatt aaaatattct tttaaaactt
     4321 gccctaaaaa actattagcc gaaaaagtta caagcaaata aaatcccaaa acactaggag
     4381 gtaaaatcaa aggcaaggaa ataaagcttt gaaggattgt tttaaaagga aaacgcacaa
     4441 aacttaacaa ataagctaaa aaaacaccga taaaaaaaag gataaaagtc gtgataaaag
     4501 caagtttaaa agtaagataa agggtttgta aaaaagctgg atcaagcact atgactcctt
     4561 aatacaatat catttgcttt tacaaaacaa agccattctt gattttcaca aatttcaagt
     4621 tctaaagctt tttctttggt gataatacta gaaagttcat tacctttaaa atcaaaaaat
     4681 acctgatata aaagtttgcc ttttttaatt tttgtaattt tagctaaaaa agaattttca
     4741 acacttaaaa gagttttgct tgcgctaaaa caaagctcat gctctttaaa aagaagttct
     4801 acactcacac caatttttaa attttctaaa gattttaatt caagcattaa aacactaaaa
     4861 atcacttctt tagaaagtat tttaacaata actatatcct cttgatttaa aagctcacaa
     4921 atttgtcctt ttataaggtt catggtgtgc taaatccgta ttttttaaaa atttcttttg
     4981 cttttgaaga gccaataaat tcgttaaatt caaaggctaa ttttttatcc ttagcgtatt
     5041 ttgtgatgac ataactttgc tctaaagggc taaaatactt tgcatcaatt ataacagcct
     5101 tacccttagg atgattgata gaagaaacta aagaataagc cactatagct atatctgaat
     5161 ttttgctatc tacatgtaaa acaggcactg agatattttc gcctaaaacg attttatcct
     5221 taagaagctc atttaaaccc aaattttcaa gcacttcttt agctgctact ccataaggag
     5281 ctactttagg attggctatg cttagatgcg tgattttgtt tgccttttct tttaaatttt
     5341 caacgcctcc ttggagtaaa ttttcatcca agctatacaa agccaaaact cccaaaacat
     5401 aaacttttgg ttttattaaa gcatttttat catcataaat agccttagca tatttagtat
     5461 ccgctgaaaa aaagagatca aattctcttc cttgttttaa aagctcataa tattttccag
     5521 aagcaccaaa aaccaattct attttatctt ctggatgtgt tttcaaaaac tcatctttaa
     5581 cttcactcat cgcctttgaa gctgaagaag ctacaaaaat acttaaattt tgcgcattta
     5641 gatgtaaggt aaaaaacaaa atcccaaaaa atactataaa ctttttcatt tagctttcct
     5701 tgtgtaaaaa tttaattttt ggattataac acaaaaaaat cattttatat catttttgca
     5761 taaaataaat acaggatgat aagtgagttt gttttgaaat ttttcttcaa aatcttttaa
     5821 aaaacattta tttaaaggat aaaaacctaa agaatttacc ccgcttaatt ttaaatgtct
     5881 aaaaacttct aaagcattat caaagcttaa ttctacgagt tcttgagtga tttttacctc
     5941 attaaaatag actttaaaaa tttgttctaa ttcatttaag ctaaaataat ttaaaccaaa
     6001 ccccgtactt tgtttgattt cttttaaatt ttgttttgca aaagtagaaa gaagtaaaa
//
LOCUS       DAPIWU010000188         4724 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_0898
            SAMN06270794-rid18266313.guided.116, whole genome shotgun sequence.
ACCESSION   DAPIWU010000188 DAPIWU010000000
VERSION     DAPIWU010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270794
            Sequence Read Archive: SRR5209571
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768258.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768258.1
            Genome Coverage       :: 191x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 23:10:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,791
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 57 of 71
            Pseudo Genes (incomplete)         :: 13 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 16 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4724
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270794-rid18266313.guided.116"
                     /isolate="CI_0898"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Pincher Creek, Alberta"
                     /lat_lon="49.4863 N 113.9502 W"
                     /collection_date="2005-05-17"
                     /collected_by="NML@Lethbridge"
     gene            <1..357
                     /locus_tag="RJ285_001786"
     CDS             <1..357
                     /locus_tag="RJ285_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PcfJ domain-containing protein"
                     /protein_id="HDV7384511.1"
                     /translation="EHNVLTIELEKKQIPKNKKLKIKEDFINLKLPEEFKLIETHKEL
                     YLHGMEQKNCVYTRRREIEDGLSAIYSLNYEGGVYTLEIFKRKNKFAIKEIKAKYNEF
                     ANKEVINFVEKSLKAV"
     gene            376..555
                     /locus_tag="RJ285_001787"
     CDS             376..555
                     /locus_tag="RJ285_001787"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384512.1"
                     /translation="MNTNKITDLHIQISKEDLKILDLLLKANEYSNIVFYCENDEEHF
                     IFTEVKLGNYFCINR"
     gene            914..2833
                     /gene="tet(O)"
                     /locus_tag="RJ285_001788"
     CDS             914..2833
                     /gene="tet(O)"
                     /locus_tag="RJ285_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HDV7384513.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIVSKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMYVPTNGELYSSDTACSGDIVILPNDVLQLNSILGNEILLP
                     QRKFIENPLPMIQTTIAVKKSEQREILLGALTEISDCDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTYFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            2885..3058
                     /locus_tag="RJ285_001789"
     CDS             2885..3058
                     /locus_tag="RJ285_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HDV7384514.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            3256..3924
                     /locus_tag="RJ285_001790"
     CDS             3256..3924
                     /locus_tag="RJ285_001790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384515.1"
                     /translation="MHVPEKGKTFAGEVREETVAWSKDTYQLLKQAEQGKVKSYVQDI
                     ALAVLDCKETATSRETFIRLMNERGYGVDWQDSHKYITYTDLAREQAGEKACKIRDNK
                     LEKYYNMDFGKESMEHEFERNARTAEAEQSKRAASRVKPTEPDRAGKQSAQRSVGDVE
                     RELRGIDEAVKSRTSEGRAEQAERRRAEQEAHQRAEAERRAAEEQQRIASRRYIGRDW
                     EPER"
     gene            4219..4641
                     /locus_tag="RJ285_001791"
     CDS             4219..4641
                     /locus_tag="RJ285_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009247731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7384516.1"
                     /translation="MRTEYKHNPPIPYSLHDMRVKKIIIQDKTIVLEFEDGYEKLTEP
                     FEQVEGNITIEGVDFDCTCVMLQSKWGNYGKFNGEKLELERFIKRYKNYSFEIVDELY
                     GYNQVLYSGYLSILETEDLVQMDISIYFTGKIIYDTKE"
BASE COUNT         1657 a          724 c         1098 g         1245 t
ORIGIN      
        1 gaacataatg ttttaacgat agaattagaa aaaaaacaaa ttccaaaaaa taaaaaactt
       61 aaaattaaag aagattttat caatttaaaa cttccagaag aatttaaact aatagaaacg
      121 cataaagaac tttacttgca cggaatggag caaaaaaatt gcgtttatac aagaagaaga
      181 gaaattgaag acggcttaag tgccatttat agtttaaatt acgaaggagg agtttataca
      241 ttggaaattt tcaaaagaaa aaataaattt gcaattaagg aaatcaaagc aaaatataat
      301 gaatttgcaa ataaagaagt tataaatttt gttgaaaaaa gcctgaaagc tgtttaaaaa
      361 atacaaggag ttaaaatgaa tacaaacaaa attacagatt tacacataca aatttcaaag
      421 gaagacttga aaattttaga tttactactt aaagccaatg agtattctaa tattgttttt
      481 tattgcgaaa acgatgaaga acattttatt tttacagaag taaaacttgg aaattatttt
      541 tgcataaaca gatgattagt ggcaggggga aatcctgccg ctttttctgc tttagtttgt
      601 cagcttgaca aataaagggt taaggaatat aattagattc agtattatac aaggagttaa
      661 taaatatgcg gcaaggtatt cttaaataaa ctgtcaattt gatagtggga acaaaaagta
      721 gcagtcccgt ttcactttta atatggggct tagttttttg tacccagttt aagaatactt
      781 ttatcatgtg attttatatg cccgaaaaca tataagtgtt ttggggctat tggagttatt
      841 tacccagtga taggagtatt tatcactggg tatttttatg cccttttttg ggtgttgata
      901 ggaggaaaat cacatgaaaa taattaactt aggcattctg gctcacgttg acgcaggaaa
      961 gacaacatta acggaaagtt tattgtatac cagtggtgca attgcagaac tagggagcgt
     1021 agatgaaggc acaacaagga cagatacaat gaatttggag cgtcaaaggg gaatcactat
     1081 ccagacagca gtgacatctt ttcagtggga ggatgtaaaa gtcaacatta tagatacgcc
     1141 aggccatatg gattttttgg cggaagtata ccgttcttta tccgtattag acggagcagt
     1201 attattagtt tctgcaaagg atggcataca ggcacagacc cgtatactgt ttcatgcact
     1261 acagataatg aagattccga caattttttt catcaataaa attgaccaag aggggattga
     1321 tttgccaatg gtatatcggg aaatgaaagc aaagctttct tcggaaatta tagtgaagca
     1381 aaaggttggg cagcatcccc atataaatgt aacggacaat gacgatatgg aacagtggga
     1441 tgcggtaatt atgggaaacg atgaactatt agagaaatat atgtcaggga aaccgtttaa
     1501 aatgtcagaa ctggaacagg aagaaaacag gagattccaa aacggaacgt tatttcccgt
     1561 ttatcacgga agcgctaaaa acaatctggg gattcggcag cttatagaag taattgtcag
     1621 taaattttat tcatcaacgc ctgaaggtca atctgaacta tgcgggcagg tttttaagat
     1681 tgaatattca gagaaaaggc ggcgttttgt ttatgtgcgt atatatagcg gaacattgca
     1741 tttgagggat gttattagaa tatctgaaaa agagaaaata aaaatcacag agatgtatgt
     1801 tccgacaaac ggtgaattat attcatccga tacagcctgc tctggtgata ttgtaatttt
     1861 accaaatgat gttttgcagc taaacagtat tttggggaac gaaatactgt tgccgcagag
     1921 aaaatttatt gaaaatcctc tccctatgat ccaaacaacg attgcagtaa agaaatctga
     1981 acagcgggaa atattgcttg gggcacttac agaaatttca gattgcgacc ctcttttaaa
     2041 atattatgtg gatactacaa cgcatgagat tatactttct tttttgggga atgtgcagat
     2101 ggaagtcatt tgtgccatcc ttgaggaaaa atatcatgtg gaggcagaaa taaaagagcc
     2161 tactgttata tatatggaaa gaccgcttag aaaagcagaa tataccatcc acatagaagt
     2221 cccgccaaat cctttctggg cttctgtcgg gttgtccata gagccgctcc ctattggaag
     2281 cggagtgcag tatgaaagca gagtttcact tggatattta aatcaatcgt tccaaaatgc
     2341 ggttatggag ggggttcttt atggctgcga gcaggggctg tatggatgga aagtgacaga
     2401 ctgtaaaatc tgttttgaat atggattgta ttatagtcct gtaagtaccc ccgcagactt
     2461 tcggctgctt tcccctatcg tattggagca ggctttaaaa aaagcaggga cagaactatt
     2521 agagccatat ctccactttg aaatttatgc accgcaggaa tatctctcac gggcgtatca
     2581 tgatgctcca aggtattgtg cagatattgt aagtactcag ataaagaatg acgaggtcat
     2641 tctgaaagga gaaatccctg ctagatgtat tcaagaatac aggaacgatt taacttattt
     2701 cacaaatggg cagggagtct gcttgacaga gttaaaagga taccagccag ctattggtaa
     2761 atttatttgc caaccccgcc gcccgaatag ccgtatagat aaggttcggc atatgttcca
     2821 caagttagct taacagcttg caaaagtcat ataaaatgag atttgaaagg attagagact
     2881 aattatgatg aaatgcgaat ggatattgtg tcctgtttgt gggagcaaaa cccgtaataa
     2941 aattaggaag gacactgttt tggagaatta tcccctttat tgtccaaaat gcagacaaga
     3001 aagattgatt aaagttgaca acttgaagat aactgtcatc aaagagccag acgcttaaga
     3061 cgcagagccg atgaaattgt ggaacaattc acgaatcatc ggctcttttt gtttcgtatt
     3121 tgaaagaaca aactcaccaa ataaaaaaaa cgatattcgg gtgggttatt ttgttatacc
     3181 ctaaattacc ctctgagtaa gcacgacctt aaagacttaa aggaacggtg caacgagcag
     3241 agctgggaac agggcttgca tgtgccggag aaaggaaaga catttgctgg agaagtccgg
     3301 gaagaaacgg tggcatggag caaagacacc taccagcttt tgaaacaggc agagcaggga
     3361 aaggtcaaaa gctatgtgca ggatattgcc cttgcggtgc tggattgtaa ggaaacagcg
     3421 accagccggg aaacctttat ccggctgatg aatgaaagag ggtacggggt ggactggcag
     3481 gacagccaca agtacatcac atataccgac ttagccaggg aacaggcagg agaaaaggct
     3541 tgtaaaatca gggataacaa gctggaaaaa tactacaata tggattttgg aaaggagagt
     3601 atggagcatg agtttgagag aaatgcacga acagcagaag cagagcagtc caagagagca
     3661 gcttcaagag ttaaaccgac agagccggac agagctggaa aacagtctgc tcaaagaagc
     3721 gttggcgatg tcgagcgaga actgcgagga attgatgaag cagtcaaatc aagaacaagt
     3781 gagggcagag cagaacaggc agagagacgc agagcagaac aggaagctca tcagcgagct
     3841 gaagcagagc gtagagctgc tgaagaacag caacgaattg cttcaagacg ctatatcggg
     3901 cgagattggg agcctgaaag atgaggttaa ggaaaacacc gtccaagagg ttagaaaggc
     3961 gttacaggcg aatatagagg ctatacagag ggctacaaag cttcttgaga agcagtctga
     4021 tacacttacg agcgtgatga agcagaagat ccgggagctt gaggaaagta agaacagttt
     4081 ttttagatat gagggcttga agttgtacct gttttggggc ggtatggtct gcaatatttt
     4141 agtgtttctt atgctgttgt atggtatgat tagtaagtaa aaagaaatcg ataaattaga
     4201 atttgacggg gaggtctcat gaggacagaa tataaacaca atccgcccat tccatatagt
     4261 ctgcatgata tgcgggtcaa aaagattata attcaagata aaacaatagt ccttgaattc
     4321 gaggacggat atgaaaaact tacagaacct tttgaacagg tcgagggaaa catcacaatc
     4381 gaaggtgtgg attttgattg tacctgcgtt atgttgcaga gcaaatgggg aaactatgga
     4441 aaattcaacg gtgagaaatt agaactggaa cgctttataa agagatacaa aaactatagc
     4501 tttgaaattg tagatgaatt atacgggtat aatcaagtat tgtattctgg ttatttatct
     4561 atcttagaaa cagaagattt agttcaaatg gacatttcaa tttactttac gggcaaaatt
     4621 atttacgata caaaagagta acaaattcca gtttgtcggt acgaagaaaa aggtgcaaaa
     4681 atgtattgat aagattagcg gtcaaggcga gagggagtga ggtg
//
